CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	2 crisprs	cas14j,DEDDh	0	2	2	0
NZ_CP009416	Jeotgalibacillus malaysiensis strain malaysiensis chromosome, complete genome	3 crisprs	csa3,WYL,DinG,cas3,DEDDh,RT	1	2	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009417_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009417_1

336481-336589

Orphan

Consensus_repeat	Method
AAATCTCCGTACTGAAACGTCATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009417_1

>merge|NZ_CP009417|1|336481-336589|CRISPRCasFinder
AAATCTCCGTACTGAAACGTCATTTTGCCCTTTTTTGCACTGGAACTCCGTACTGAAATGTAAAACTCTTTATTTTTGCTCCGAAACTCCGTACTGAAACGTCATTTTT

>NZ_CP009417|1|1|336481-336589|CRISPRCasFinder
AAATCTCCGTACTGAAACGTCATTTT	GCCCTTTTTTGCACTGGAACTCCGTACTGAAATGTAAAACTCTTTATTTTTGCTCC
GAAACTCCGTACTGAAACGTCATTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009417.1\|WP_040109395.1\|330341_330848_-\|prepilin-peptidase	unknown	unknown	unknown
NZ_CP009417.1\|WP_156129668.1\|339839_341492_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223531
NZ_CP009417.1\|WP_040109422.1\|344162_345122_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP009417.1\|WP_040109400.1\|331542_332313_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109407.1\|334805_336251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_052268942.1\|333679_334630_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP009417.1\|WP_082029218.1\|327588_328275_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|180266
NZ_CP009417.1\|WP_040109412.1\|336835_337927_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109391.1\|328617_329502_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP009417.1\|WP_040109404.1\|332779_333664_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP009417.1\|WP_040109415.1\|338335_339727_-\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP009417.1\|WP_040109424.1\|346033_347338_+\|replication-relaxation-family-protein	unknown	unknown	gnl\|CDD\|379384
NZ_CP009417.1\|WP_052268944.1\|347597_348167_-\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP009417.1\|WP_162182149.1\|330938_331583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109402.1\|332427_332652_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109426.1\|347394_347574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109393.1\|329567_330323_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109419.1\|342200_343997_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP009417.1\|WP_040109423.1\|345399_345675_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109417.1\|341400_342186_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472

Protein	Function_ID	Function_description	E-value
NZ_CP009417.1\|WP_156129668.1\|339839_341492_-\|AAA-family-ATPase	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	4.33733e-11
NZ_CP009417.1\|WP_040109422.1\|344162_345122_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.48098e-09
NZ_CP009417.1\|WP_040109417.1\|341400_342186_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	8.10923e-13
NZ_CP009417.1\|WP_052268942.1\|333679_334630_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.34863e-12
NZ_CP009417.1\|WP_040109391.1\|328617_329502_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.49774e-14
NZ_CP009417.1\|WP_040109419.1\|342200_343997_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	3.36388e-06
NZ_CP009417.1\|WP_052268944.1\|347597_348167_-\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.19728e-56
NZ_CP009417.1\|WP_082029218.1\|327588_328275_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|180266	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK.	6.70648e-32
NZ_CP009417.1\|WP_040109404.1\|332779_333664_-\|hypothetical-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	2.7854e-06
NZ_CP009417.1\|WP_040109415.1\|338335_339727_-\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	4.81823e-52
NZ_CP009417.1\|WP_040109424.1\|346033_347338_+\|replication-relaxation-family-protein	gnl\|CDD\|379384	pfam13814, Replic_Relax, Replication-relaxation. This family includes proteins which are essential for plasmid replication and plasmid DNA relaxation.	5.72947e-18

>NZ_CP009417.1|WP_040109407.1|334805_336251_+|hypothetical-protein
MTAKKAERDENNEKLVISIREVLEEKQLLEPLRRYSDAPVESLIGFLYESHYLNKDEQAVYKQIKKDSFFRTKRRWVKTAIKNLEMSKAPNKELRAKQAFLKKYIRQFGINQFQKEFEVKSVEEYMENTKEELENWADSEVMPIHSYPYFEEKTARQHKTAIQTDLLIVIGEFLISNTSFFKPTVYQSPNIAINTSFFGVSKRGKIELDKTPMRAEYDELATSKEYYPAIRKNKKGAGNVNILVSSDFVNDLNKKVPDLDAKDFELFLDVLNYRDASFQASRRIQFPLSELVQQIYGSDGSKNYEMTIERLLKLANYRVTESTAEGEYFVKGLFSSVKIQNDTKDKNGGKIVTAFVSEDVYDDYLRQQVVNIYSDKVKELKGHYAYHLVFVLQKERLQAHQAQEENPVKRKWLDFGYSIRFNRRSKKENLEEFEEAVRLIKEQQFLIQDYYRSGEYYFFTFFPLSPLELENDSDRTKTYLN
>NZ_CP009417.1|WP_052268942.1|333679_334630_-|type-II-secretion-system-F-family-protein
MMIWFVGLFVLIMLGLIVMTVMSKDEEKDENILEMRKRQSQTSLRELALKKKLEALLEERVEVSKKYKIETKMLQAGFNATYGEYRIVTIMLAILLPLFSLFFMKSIYQLPVLGVVGFFIPGQVIDFFRNRRQIVIEKQVGSFIKLVVERYSSHGDFAKALKDTTDDFKGHEPMYTELRKLRSELDYGRPVNEGMRDLHRRIGNPYLLLLTEFYEISASLGTKDSRNELMKEVHKQYREGEKLKSTLRKEIAGPKREAFIMLGAIPAMIGYQFIFSPEYVDFMLNTQMGQIGLSGVAIVMLGCFWFINKKIGAPLD
>NZ_CP009417.1|WP_040109404.1|332779_333664_-|hypothetical-protein
MITVLFVVIGAVLFFFFSRSFFGLLFSMDNYKNHQKRMRQLQFTEDGKRVNDDTKEAIDKITSPVIKHILPRFRMKDRETLEKELRMAGWDVYYTPEQFMAMNVITKLLGLIVGFMVYQIAPLFGVVAFVALFFGFNVFFKNTLKERRKKVFQAFPDFIRVIQGYLSAGIPLAKAIEEAFPYMSPEWKRIMKSFLVNTNMRSLHEAIERINDDVDIFEIQEFFSLVKLNLEQGIDVKESFSGQREKVMDMQYEVMLEKIGHRQLMATVIQGPLLLTMIVAFGLPTLNAMMNFGG
>NZ_CP009417.1|WP_040109402.1|332427_332652_-|hypothetical-protein
MKNMMERAKFVCGGEEGASNVELIIWFSVVFILALALYAFGDDIQGFLSDSGDSVNGLSDQVNDGKLDVDKGRF
>NZ_CP009417.1|WP_040109400.1|331542_332313_-|hypothetical-protein
MYWYKRVKELMKDKKGSSVIEFVMGLLLFVTFVAFVVDLLLVGGKRFNVGQEATDISRTLAKQGGVMSVTPEGYPGGDTAYLTSTEMLQKIEKRMKRSGLGEYGDGVWFVTLTEFDNEGNEIRSGRLTPNTNFKVDYMNSMDVKISASYRWRLMRFILADNAPDSPVTAERHSVSEFKYNFNDWKGERYDSDPLDEYEEPDYGDYEPGTDLDEGTGEDSGDTGGEGDADQEEDIIDDGQGDGNSGEIDFPIEEPIE
>NZ_CP009417.1|WP_162182149.1|330938_331583_-|hypothetical-protein
MGKSTSRLKSRLNNEKGSYSIIAVMLIFIILIAVAAYTDMITKRWTINEVQAVMDLSGGNTLKKHVNLNELYQEKIGDGRFTSDKNKEQIKSELEAAVDEDYLRKIEDAYKEELFNQIKVNDTISSVQVTNLDVDFGYTNEGLGEKATPRPQFVIDSVVQLEVKTSNQFDTGANYTSQVFSSFNSSNFEVTVIDKPKDGKQTLAVRSVTRLVYR
>NZ_CP009417.1|WP_040109395.1|330341_330848_-|prepilin-peptidase
MDFIKEFASPLLNEPIVLFIFISFLLYAGVRDFQTKLIRDKLNIFFLSTAIVLMVLTGLSDAFAFETIRLEFGWSNVAGLIMGFLFLFIPAFIKNQPMGGDIKISAVVGFWLGYEAMLGVLLIATLANLLYWVGAFYVYKNFGSKTLMPFAPFIAIGALVFYGTAYFL
>NZ_CP009417.1|WP_040109393.1|329567_330323_-|hypothetical-protein
MKEIIMTDFDKLHFMKIVHFLNDGVIGLDIFILENYQATQLNPGVLSPEDEGKLISGVYDRPATKEEVLMAEEILEKRAEYALNKTIQYVNAFGESTLLTMLEVGGRYFAYINDKHLRFNRLAEIVLTPENLPPDIGEVPKDFLPAVIQNLPEEMLPQKNKGMTIQVGEGVFLRLRRHSMTMFATVIIMDIENDVVKSLSAPLGFALSFKNGAWEALPEDPELTGKMHEEMQKAFDHVNLELSMLNNQPNV
>NZ_CP009417.1|WP_040109391.1|328617_329502_+|TlpA-family-protein-disulfide-reductase
MKQNKRTKQTKKWAVAGLLGAVMITGVACSNEPKEQAPGADEPVQIAKTDEKKEVEKEEVQLKEVSVEVDYSKSAQEILTAYSEEGMSRFKLSYPDTYSMEYALKTIGREMPKFEGKDLNGKTITSDDYKNKSYIVNISKSTCEVCQELAPVIQTLEKGEDKIPVINLYPIDKSEDVKAHREKTKWSKDSIAIVGDKNKSIENLAIKELAVATVPTLLFVDKSGKISYINIGLTDDVLLSDMKEKAFGEEKLYDFVRKEMVKVDKDGNVVKQEPLIDESKDDKKVTKPVEPKKE
>NZ_CP009417.1|WP_082029218.1|327588_328275_-|sigma-70-family-RNA-polymerase-sigma-factor
MLLEQEDGDITEDILIFIDDEPKEDYVPEKLEQWEKEIYAVENEKLIHHVANKFRNTRLPYDELFSVCMMGFTKALNAYDKKRGVKLSTFAVNCMQNEVKFFLRKEKKHRDNTVSMGMVLSQDKNGNNFELEDILSEHANEEVLSIEDKYEIAEDKDIIMEAIEQLTEQEQYIMNSRYGLNGLQVKTQKTIAEEIDMSQANVSKIQKNCIDKIKKYVEATYSDERIHL
>NZ_CP009417.1|WP_040109412.1|336835_337927_+|hypothetical-protein
MSETGTIMNRHIILSNKLLVALSGISTWTSRDGEYTYEKHNYHISKPYLEQKWTKSAIRQFLAYVSLANPEGHIYFASEEELSKLIHCSVRTIQENNKSFEKHGIIQFQRIWGEFLDIHICDYTKEVRDLDVTDSGEVSSRTGYTSVWHEVMGELFKIENINELRLALRCLLLHEKEVHVQQLDEAILSYDEIKGFLPKYIGYKKAIKQLTDNLSNIFHISCLESKEMVKELFHRQTKKRPSLMKKLAKPFALSFEIMKSDDSRLIRDKERGETMIHWFEFKKTARNYLAVDKAGINQKDLNTLSDTYGSSVVKEGLERILRVFEQNEYGHRLHILYDEFKSEPYQFVKKRIHSLYLSKSALM
>NZ_CP009417.1|WP_040109415.1|338335_339727_-|CpaF-family-protein
MSIEKNFKSFKKDMQKMKGIRETGTIYTFEDALEEVRHFITEKKKQLTDDDTGSDKKNREEVVKDKAALRLVLEESRAEIRDVVYGRNIRVREYENDPELFIDMAAEEFVGYSVLAKAFYDPKVSDIFCMGWNKIYIEKDGENEKYPYHFRSPKHYQEFIERVLRDGGAGVGKVVDNGENKIVDAEFYGDRIQATSKMVSPKDFSITFRKHKESHITLNQIVEQGVLSPEISEFLGQAILGELNLIYAGITGSGKTTTIRALLDHYVTLSNKRMLVCEDTQELFPQNDHTLELVSHKNSNPQLAVELYDIILTALRLKPKYIVVGEVRGKEAQAAVEAAETGHSTIFTMHGGKPINIINRLVTKYLSAMPALGIDVVERIIGSAIDYIAIQDDIPGIGRRVSIISEVTFDDETGRVSLKPIFEFDFETEEYKMVNKMHPEKAKLMLRRGVKRDDIKHFVEGWS
>NZ_CP009417.1|WP_156129668.1|339839_341492_-|AAA-family-ATPase
MIHKTTILRDTSMVTSRKSSLVKEWQNQTNKRVPKGLSFFFVLAKARFCNEKRWGLCIIQVTILERTIQRGNFFMRNDVLLATGFKKMDETVTKFQGYQFIGQVNYRRELIASVKNLNPDIVLVSDMLSGTEDLTDILSRIKMEKPSIRILYMTVAPNANDVPRVMALGSLVLAGIYPFLIEKSVTPTQIQYAMENPVRREDVEFLLKYHKKASEKNNSLFELEEELEQDDVEEDGYKNVFNISSIKPGTGKSFISVNLSTIVAKYGKKKDGKAPRVALVEADLQNLSLGTLLSIEDDKYNLKTAMEKIATIVNDKGDLSDDMEKVESVNRFVLECFRPYHKVKNLFVLTGSKLTMEEIENIQPFQYIYLVELIANEFDIVFIDTNSSLAHVTTYPLLRLATKTYYVLNLDFNNVRNNTRYKTTLENLEILHKVEYILNEDYVPEYMKMYGVEEPEELVFTAEHVRDSDFNLAGTLPMIPKSVFLNRLYSAEPIVLDETGAPYTLLPRLEFARIANQIWEIDNLEWLEKEYEKQKEEFSDGKKRKGFFSR
>NZ_CP009417.1|WP_040109417.1|341400_342186_-|Flp-pilus-assembly-protein-CpaB
MKGKKIAMMLLQASGVILFAGGFYVYTQNQIEPVKVYQFSRDIAPNTKISASDLIEVEIPKKAVNPTFELSPKEIVGKYNSTKVFKNEYVVKPNVVNKENIDPFESIDLTKLRKVSIPVSYTEGIGGNVKRGDRIDLVYVGQESKDGKSYSYSKTFMSDVLVYAATTSEGFEYRDRTQNVKGDQAVQEGEELETPQDTGELAQLILAVTLDQAEEITARLNTGEVRIVGRFNDSQNYDSPGYIHGDFSKVFSGEGMAESNK
>NZ_CP009417.1|WP_040109419.1|342200_343997_-|hypothetical-protein
MSYNKPKEKILLAIGVRSLEEYFKKELGEEFHFVGTSTYREGVLKNIEQNAPDIVILREQLQGNERISEIIYDIRMKFPHVRIVFVTGSRNPGDQLLAMLVNMQIFDILAEEKVPAKKIIDLVRNPNQYHHVAHFQPKPIIDEKSKEVVFQAPDTREVVKHVERTIFVERETPQTTPAVEEKEKRSRKSRGLFGTKKENEESEPEKTVEEPIQEDEPVKKGLFGRKQKPVKDVPETPVVDKKALKKQQEEERRREMEHQQQLEKIRAREEAARLEAEELQRQEMLRRQDEDSETQKLKLKAIELQREVELLQKNQEAERFINRELPHHSKQKILTFVGSEHGVGNTQVALNTAIQLSTNGYKTIYIELKERPSTVDYLYQLHRNVNNGLEAALFSLDTNDYSGVDKSITRMKEVIERTNGGDLMLEAYKLFPKNLDFLFFSPSYTESSNEISAGNPQALKELCMHLLFEGGYHYIVLDADVEKSNPYTEIALRFGTHVFYTLTQDVCHIGNSVRQVTELSKSINLVDKLYYVVNKYEDTELDKRAISDWLKTDVRLFVPNAHREFINANYQGVPALLGSRHKELKKSFMEIAQAIEKL
>NZ_CP009417.1|WP_040109422.1|344162_345122_-|helix-turn-helix-transcriptional-regulator
MSNENKWASVTEELEQKDIMRANKLIQMLEAEGAVNNIPKIEKEFDKIQQEWKHRIITSEFVTKLYRSLEALKFAKAHNDGIKTSRGELFQELIDKKGWEPVQAIWSKMEELEEKYKGKIPETEIKKLEKEYKKSMEYIMTEIGVGYQSVIEREFEKRIRIYQKRLERSVKFDFSTWLHSARKQKGYTLKDLADKAGISVSYIHRFEKNQRRAPSVPIVVKLATALDYDPTMVLNMIGQGADSLGLPSKSDPVELLDLLNVSSLKVGGKTIGTVEKNLLVSIVEQVVQEEWEDEDVWTEGKDLFVKIVKLQKKLNSKKK
>NZ_CP009417.1|WP_040109423.1|345399_345675_+|hypothetical-protein
MEKKKMTRGTKKLVEDAISQLEPSKKNNTNAICEKMVEMLVDRFDGANLDYQLKRMDLETTGRIIEKIDEYFQKHPNLLFEETDSQELATT
>NZ_CP009417.1|WP_040109424.1|346033_347338_+|replication-relaxation-family-protein
MRKELRDAINELERVDIKLLHKLYLFRCLTIRQAYRVLYKEEYDSFLDFENERLNKLIELGVIEKVAFHIDNFALFLTTNGVDIVREAVQLPTQIFNPDTKTVKRGYYRAGELRMSPRLINHQVHLNQFILEFSNIAEDYGYTFNYFDEKHVSQYFTIRPDGLIQIYDTDFFIEMDMGTESQKQLTEKWNHYRDFFRSQEYNEKEKKIVVLFITQTNKNLDARKDIVRYTASQAIIDVFGEGFDMHIGSREELLKLVFEELIPDMVQQNDTKAKVLRLLHQYHGFSIAQGERLRGMLHDTTYEYYIRRLNDDGGIRALFGRVQEFVLDDYTTQPLSVLHKITYHKRNSNSYRLKMQREIPYIVVASDEQTLYKDLLVTDIKNLENIFFTTVERLERRDFHSALFQIDMQGNLYHFKNDGLSERVYESNVREDLI
>NZ_CP009417.1|WP_040109426.1|347394_347574_-|hypothetical-protein
MREKEKTIHQLKREVLVAYLTKKTPGLSKQAKKHWDEKYEASREALEKAIAQESADKIS
>NZ_CP009417.1|WP_052268944.1|347597_348167_-|thymidine-kinase
MNMTRNIKEGLVVECGSMFSGKSDAIRRKGKRYEYAGIKAVFIKPDLDNRYDEFSVTTHNGDKVPAISTDIHGSLLSISDVMSSDVVLIDEIQFFKEQVIEDIEQLVQQGKRVYVAGLDLDFKGNPFYITQQLMSIADEVNKHKAVCMSCGEDAYISHKKVQNDKLVELGHSDLYEALCRSCYSKKNQR

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP009417_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009417_2

336655-336756

Orphan

Consensus_repeat	Method
AAATCTCCGTACTGAAACGTCATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009417_2

>merge|NZ_CP009417|2|336655-336756|CRISPRCasFinder
AAAACTCCGTACTGAAATGCAATGTTTTTTGCCCCTGAAAATTCAGTCATATCAAGGGGTACAGCGTTTTTGCTCAAAATCTCCGTACCGAAATGTCATTTT

>NZ_CP009417|2|2|336655-336756|CRISPRCasFinder
AAAACTCCGTACTGAAATGCAATGTT	TTTTGCCCCTGAAAATTCAGTCATATCAAGGGGTACAGCGTTTTTGCTCA
AAATCTCCGTACCGAAATGTCATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009417.1\|WP_040109395.1\|330341_330848_-\|prepilin-peptidase	unknown	unknown	unknown
NZ_CP009417.1\|WP_156129668.1\|339839_341492_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223531
NZ_CP009417.1\|WP_040109422.1\|344162_345122_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP009417.1\|WP_040109400.1\|331542_332313_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109407.1\|334805_336251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_052268942.1\|333679_334630_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP009417.1\|WP_082029218.1\|327588_328275_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|180266
NZ_CP009417.1\|WP_040109412.1\|336835_337927_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109391.1\|328617_329502_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP009417.1\|WP_040109404.1\|332779_333664_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP009417.1\|WP_040109415.1\|338335_339727_-\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP009417.1\|WP_040109424.1\|346033_347338_+\|replication-relaxation-family-protein	unknown	unknown	gnl\|CDD\|379384
NZ_CP009417.1\|WP_052268944.1\|347597_348167_-\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP009417.1\|WP_162182149.1\|330938_331583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109402.1\|332427_332652_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109426.1\|347394_347574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109393.1\|329567_330323_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109419.1\|342200_343997_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP009417.1\|WP_040109423.1\|345399_345675_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009417.1\|WP_040109417.1\|341400_342186_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472

Protein	Function_ID	Function_description	E-value
NZ_CP009417.1\|WP_156129668.1\|339839_341492_-\|AAA-family-ATPase	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	4.33733e-11
NZ_CP009417.1\|WP_040109422.1\|344162_345122_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.48098e-09
NZ_CP009417.1\|WP_040109417.1\|341400_342186_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	8.10923e-13
NZ_CP009417.1\|WP_052268942.1\|333679_334630_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.34863e-12
NZ_CP009417.1\|WP_040109391.1\|328617_329502_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.49774e-14
NZ_CP009417.1\|WP_040109419.1\|342200_343997_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	3.36388e-06
NZ_CP009417.1\|WP_052268944.1\|347597_348167_-\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.19728e-56
NZ_CP009417.1\|WP_082029218.1\|327588_328275_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|180266	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK.	6.70648e-32
NZ_CP009417.1\|WP_040109404.1\|332779_333664_-\|hypothetical-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	2.7854e-06
NZ_CP009417.1\|WP_040109415.1\|338335_339727_-\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	4.81823e-52
NZ_CP009417.1\|WP_040109424.1\|346033_347338_+\|replication-relaxation-family-protein	gnl\|CDD\|379384	pfam13814, Replic_Relax, Replication-relaxation. This family includes proteins which are essential for plasmid replication and plasmid DNA relaxation.	5.72947e-18

>NZ_CP009417.1|WP_040109407.1|334805_336251_+|hypothetical-protein
MTAKKAERDENNEKLVISIREVLEEKQLLEPLRRYSDAPVESLIGFLYESHYLNKDEQAVYKQIKKDSFFRTKRRWVKTAIKNLEMSKAPNKELRAKQAFLKKYIRQFGINQFQKEFEVKSVEEYMENTKEELENWADSEVMPIHSYPYFEEKTARQHKTAIQTDLLIVIGEFLISNTSFFKPTVYQSPNIAINTSFFGVSKRGKIELDKTPMRAEYDELATSKEYYPAIRKNKKGAGNVNILVSSDFVNDLNKKVPDLDAKDFELFLDVLNYRDASFQASRRIQFPLSELVQQIYGSDGSKNYEMTIERLLKLANYRVTESTAEGEYFVKGLFSSVKIQNDTKDKNGGKIVTAFVSEDVYDDYLRQQVVNIYSDKVKELKGHYAYHLVFVLQKERLQAHQAQEENPVKRKWLDFGYSIRFNRRSKKENLEEFEEAVRLIKEQQFLIQDYYRSGEYYFFTFFPLSPLELENDSDRTKTYLN
>NZ_CP009417.1|WP_052268942.1|333679_334630_-|type-II-secretion-system-F-family-protein
MMIWFVGLFVLIMLGLIVMTVMSKDEEKDENILEMRKRQSQTSLRELALKKKLEALLEERVEVSKKYKIETKMLQAGFNATYGEYRIVTIMLAILLPLFSLFFMKSIYQLPVLGVVGFFIPGQVIDFFRNRRQIVIEKQVGSFIKLVVERYSSHGDFAKALKDTTDDFKGHEPMYTELRKLRSELDYGRPVNEGMRDLHRRIGNPYLLLLTEFYEISASLGTKDSRNELMKEVHKQYREGEKLKSTLRKEIAGPKREAFIMLGAIPAMIGYQFIFSPEYVDFMLNTQMGQIGLSGVAIVMLGCFWFINKKIGAPLD
>NZ_CP009417.1|WP_040109404.1|332779_333664_-|hypothetical-protein
MITVLFVVIGAVLFFFFSRSFFGLLFSMDNYKNHQKRMRQLQFTEDGKRVNDDTKEAIDKITSPVIKHILPRFRMKDRETLEKELRMAGWDVYYTPEQFMAMNVITKLLGLIVGFMVYQIAPLFGVVAFVALFFGFNVFFKNTLKERRKKVFQAFPDFIRVIQGYLSAGIPLAKAIEEAFPYMSPEWKRIMKSFLVNTNMRSLHEAIERINDDVDIFEIQEFFSLVKLNLEQGIDVKESFSGQREKVMDMQYEVMLEKIGHRQLMATVIQGPLLLTMIVAFGLPTLNAMMNFGG
>NZ_CP009417.1|WP_040109402.1|332427_332652_-|hypothetical-protein
MKNMMERAKFVCGGEEGASNVELIIWFSVVFILALALYAFGDDIQGFLSDSGDSVNGLSDQVNDGKLDVDKGRF
>NZ_CP009417.1|WP_040109400.1|331542_332313_-|hypothetical-protein
MYWYKRVKELMKDKKGSSVIEFVMGLLLFVTFVAFVVDLLLVGGKRFNVGQEATDISRTLAKQGGVMSVTPEGYPGGDTAYLTSTEMLQKIEKRMKRSGLGEYGDGVWFVTLTEFDNEGNEIRSGRLTPNTNFKVDYMNSMDVKISASYRWRLMRFILADNAPDSPVTAERHSVSEFKYNFNDWKGERYDSDPLDEYEEPDYGDYEPGTDLDEGTGEDSGDTGGEGDADQEEDIIDDGQGDGNSGEIDFPIEEPIE
>NZ_CP009417.1|WP_162182149.1|330938_331583_-|hypothetical-protein
MGKSTSRLKSRLNNEKGSYSIIAVMLIFIILIAVAAYTDMITKRWTINEVQAVMDLSGGNTLKKHVNLNELYQEKIGDGRFTSDKNKEQIKSELEAAVDEDYLRKIEDAYKEELFNQIKVNDTISSVQVTNLDVDFGYTNEGLGEKATPRPQFVIDSVVQLEVKTSNQFDTGANYTSQVFSSFNSSNFEVTVIDKPKDGKQTLAVRSVTRLVYR
>NZ_CP009417.1|WP_040109395.1|330341_330848_-|prepilin-peptidase
MDFIKEFASPLLNEPIVLFIFISFLLYAGVRDFQTKLIRDKLNIFFLSTAIVLMVLTGLSDAFAFETIRLEFGWSNVAGLIMGFLFLFIPAFIKNQPMGGDIKISAVVGFWLGYEAMLGVLLIATLANLLYWVGAFYVYKNFGSKTLMPFAPFIAIGALVFYGTAYFL
>NZ_CP009417.1|WP_040109393.1|329567_330323_-|hypothetical-protein
MKEIIMTDFDKLHFMKIVHFLNDGVIGLDIFILENYQATQLNPGVLSPEDEGKLISGVYDRPATKEEVLMAEEILEKRAEYALNKTIQYVNAFGESTLLTMLEVGGRYFAYINDKHLRFNRLAEIVLTPENLPPDIGEVPKDFLPAVIQNLPEEMLPQKNKGMTIQVGEGVFLRLRRHSMTMFATVIIMDIENDVVKSLSAPLGFALSFKNGAWEALPEDPELTGKMHEEMQKAFDHVNLELSMLNNQPNV
>NZ_CP009417.1|WP_040109391.1|328617_329502_+|TlpA-family-protein-disulfide-reductase
MKQNKRTKQTKKWAVAGLLGAVMITGVACSNEPKEQAPGADEPVQIAKTDEKKEVEKEEVQLKEVSVEVDYSKSAQEILTAYSEEGMSRFKLSYPDTYSMEYALKTIGREMPKFEGKDLNGKTITSDDYKNKSYIVNISKSTCEVCQELAPVIQTLEKGEDKIPVINLYPIDKSEDVKAHREKTKWSKDSIAIVGDKNKSIENLAIKELAVATVPTLLFVDKSGKISYINIGLTDDVLLSDMKEKAFGEEKLYDFVRKEMVKVDKDGNVVKQEPLIDESKDDKKVTKPVEPKKE
>NZ_CP009417.1|WP_082029218.1|327588_328275_-|sigma-70-family-RNA-polymerase-sigma-factor
MLLEQEDGDITEDILIFIDDEPKEDYVPEKLEQWEKEIYAVENEKLIHHVANKFRNTRLPYDELFSVCMMGFTKALNAYDKKRGVKLSTFAVNCMQNEVKFFLRKEKKHRDNTVSMGMVLSQDKNGNNFELEDILSEHANEEVLSIEDKYEIAEDKDIIMEAIEQLTEQEQYIMNSRYGLNGLQVKTQKTIAEEIDMSQANVSKIQKNCIDKIKKYVEATYSDERIHL
>NZ_CP009417.1|WP_040109412.1|336835_337927_+|hypothetical-protein
MSETGTIMNRHIILSNKLLVALSGISTWTSRDGEYTYEKHNYHISKPYLEQKWTKSAIRQFLAYVSLANPEGHIYFASEEELSKLIHCSVRTIQENNKSFEKHGIIQFQRIWGEFLDIHICDYTKEVRDLDVTDSGEVSSRTGYTSVWHEVMGELFKIENINELRLALRCLLLHEKEVHVQQLDEAILSYDEIKGFLPKYIGYKKAIKQLTDNLSNIFHISCLESKEMVKELFHRQTKKRPSLMKKLAKPFALSFEIMKSDDSRLIRDKERGETMIHWFEFKKTARNYLAVDKAGINQKDLNTLSDTYGSSVVKEGLERILRVFEQNEYGHRLHILYDEFKSEPYQFVKKRIHSLYLSKSALM
>NZ_CP009417.1|WP_040109415.1|338335_339727_-|CpaF-family-protein
MSIEKNFKSFKKDMQKMKGIRETGTIYTFEDALEEVRHFITEKKKQLTDDDTGSDKKNREEVVKDKAALRLVLEESRAEIRDVVYGRNIRVREYENDPELFIDMAAEEFVGYSVLAKAFYDPKVSDIFCMGWNKIYIEKDGENEKYPYHFRSPKHYQEFIERVLRDGGAGVGKVVDNGENKIVDAEFYGDRIQATSKMVSPKDFSITFRKHKESHITLNQIVEQGVLSPEISEFLGQAILGELNLIYAGITGSGKTTTIRALLDHYVTLSNKRMLVCEDTQELFPQNDHTLELVSHKNSNPQLAVELYDIILTALRLKPKYIVVGEVRGKEAQAAVEAAETGHSTIFTMHGGKPINIINRLVTKYLSAMPALGIDVVERIIGSAIDYIAIQDDIPGIGRRVSIISEVTFDDETGRVSLKPIFEFDFETEEYKMVNKMHPEKAKLMLRRGVKRDDIKHFVEGWS
>NZ_CP009417.1|WP_156129668.1|339839_341492_-|AAA-family-ATPase
MIHKTTILRDTSMVTSRKSSLVKEWQNQTNKRVPKGLSFFFVLAKARFCNEKRWGLCIIQVTILERTIQRGNFFMRNDVLLATGFKKMDETVTKFQGYQFIGQVNYRRELIASVKNLNPDIVLVSDMLSGTEDLTDILSRIKMEKPSIRILYMTVAPNANDVPRVMALGSLVLAGIYPFLIEKSVTPTQIQYAMENPVRREDVEFLLKYHKKASEKNNSLFELEEELEQDDVEEDGYKNVFNISSIKPGTGKSFISVNLSTIVAKYGKKKDGKAPRVALVEADLQNLSLGTLLSIEDDKYNLKTAMEKIATIVNDKGDLSDDMEKVESVNRFVLECFRPYHKVKNLFVLTGSKLTMEEIENIQPFQYIYLVELIANEFDIVFIDTNSSLAHVTTYPLLRLATKTYYVLNLDFNNVRNNTRYKTTLENLEILHKVEYILNEDYVPEYMKMYGVEEPEELVFTAEHVRDSDFNLAGTLPMIPKSVFLNRLYSAEPIVLDETGAPYTLLPRLEFARIANQIWEIDNLEWLEKEYEKQKEEFSDGKKRKGFFSR
>NZ_CP009417.1|WP_040109417.1|341400_342186_-|Flp-pilus-assembly-protein-CpaB
MKGKKIAMMLLQASGVILFAGGFYVYTQNQIEPVKVYQFSRDIAPNTKISASDLIEVEIPKKAVNPTFELSPKEIVGKYNSTKVFKNEYVVKPNVVNKENIDPFESIDLTKLRKVSIPVSYTEGIGGNVKRGDRIDLVYVGQESKDGKSYSYSKTFMSDVLVYAATTSEGFEYRDRTQNVKGDQAVQEGEELETPQDTGELAQLILAVTLDQAEEITARLNTGEVRIVGRFNDSQNYDSPGYIHGDFSKVFSGEGMAESNK
>NZ_CP009417.1|WP_040109419.1|342200_343997_-|hypothetical-protein
MSYNKPKEKILLAIGVRSLEEYFKKELGEEFHFVGTSTYREGVLKNIEQNAPDIVILREQLQGNERISEIIYDIRMKFPHVRIVFVTGSRNPGDQLLAMLVNMQIFDILAEEKVPAKKIIDLVRNPNQYHHVAHFQPKPIIDEKSKEVVFQAPDTREVVKHVERTIFVERETPQTTPAVEEKEKRSRKSRGLFGTKKENEESEPEKTVEEPIQEDEPVKKGLFGRKQKPVKDVPETPVVDKKALKKQQEEERRREMEHQQQLEKIRAREEAARLEAEELQRQEMLRRQDEDSETQKLKLKAIELQREVELLQKNQEAERFINRELPHHSKQKILTFVGSEHGVGNTQVALNTAIQLSTNGYKTIYIELKERPSTVDYLYQLHRNVNNGLEAALFSLDTNDYSGVDKSITRMKEVIERTNGGDLMLEAYKLFPKNLDFLFFSPSYTESSNEISAGNPQALKELCMHLLFEGGYHYIVLDADVEKSNPYTEIALRFGTHVFYTLTQDVCHIGNSVRQVTELSKSINLVDKLYYVVNKYEDTELDKRAISDWLKTDVRLFVPNAHREFINANYQGVPALLGSRHKELKKSFMEIAQAIEKL
>NZ_CP009417.1|WP_040109422.1|344162_345122_-|helix-turn-helix-transcriptional-regulator
MSNENKWASVTEELEQKDIMRANKLIQMLEAEGAVNNIPKIEKEFDKIQQEWKHRIITSEFVTKLYRSLEALKFAKAHNDGIKTSRGELFQELIDKKGWEPVQAIWSKMEELEEKYKGKIPETEIKKLEKEYKKSMEYIMTEIGVGYQSVIEREFEKRIRIYQKRLERSVKFDFSTWLHSARKQKGYTLKDLADKAGISVSYIHRFEKNQRRAPSVPIVVKLATALDYDPTMVLNMIGQGADSLGLPSKSDPVELLDLLNVSSLKVGGKTIGTVEKNLLVSIVEQVVQEEWEDEDVWTEGKDLFVKIVKLQKKLNSKKK
>NZ_CP009417.1|WP_040109423.1|345399_345675_+|hypothetical-protein
MEKKKMTRGTKKLVEDAISQLEPSKKNNTNAICEKMVEMLVDRFDGANLDYQLKRMDLETTGRIIEKIDEYFQKHPNLLFEETDSQELATT
>NZ_CP009417.1|WP_040109424.1|346033_347338_+|replication-relaxation-family-protein
MRKELRDAINELERVDIKLLHKLYLFRCLTIRQAYRVLYKEEYDSFLDFENERLNKLIELGVIEKVAFHIDNFALFLTTNGVDIVREAVQLPTQIFNPDTKTVKRGYYRAGELRMSPRLINHQVHLNQFILEFSNIAEDYGYTFNYFDEKHVSQYFTIRPDGLIQIYDTDFFIEMDMGTESQKQLTEKWNHYRDFFRSQEYNEKEKKIVVLFITQTNKNLDARKDIVRYTASQAIIDVFGEGFDMHIGSREELLKLVFEELIPDMVQQNDTKAKVLRLLHQYHGFSIAQGERLRGMLHDTTYEYYIRRLNDDGGIRALFGRVQEFVLDDYTTQPLSVLHKITYHKRNSNSYRLKMQREIPYIVVASDEQTLYKDLLVTDIKNLENIFFTTVERLERRDFHSALFQIDMQGNLYHFKNDGLSERVYESNVREDLI
>NZ_CP009417.1|WP_040109426.1|347394_347574_-|hypothetical-protein
MREKEKTIHQLKREVLVAYLTKKTPGLSKQAKKHWDEKYEASREALEKAIAQESADKIS
>NZ_CP009417.1|WP_052268944.1|347597_348167_-|thymidine-kinase
MNMTRNIKEGLVVECGSMFSGKSDAIRRKGKRYEYAGIKAVFIKPDLDNRYDEFSVTTHNGDKVPAISTDIHGSLLSISDVMSSDVVLIDEIQFFKEQVIEDIEQLVQQGKRVYVAGLDLDFKGNPFYITQQLMSIADEVNKHKAVCMSCGEDAYISHKKVQNDKLVELGHSDLYEALCRSCYSKKNQR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009417_1	1.1\|336507\|56\|NZ_CP009417\|CRISPRCasFinder	336507-336562	56	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	336507-336562	0	1.0
NZ_CP009417_2	2.1\|336681\|50\|NZ_CP009417\|CRISPRCasFinder	336681-336730	50	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	336681-336730	0	1.0

1. spacer 1.1|336507|56|NZ_CP009417|CRISPRCasFinder matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcccttttttgcactggaactccgtactgaaatgtaaaactctttatttttgctcc	CRISPR spacer
gcccttttttgcactggaactccgtactgaaatgtaaaactctttatttttgctcc	Protospacer
********************************************************

2. spacer 2.1|336681|50|NZ_CP009417|CRISPRCasFinder matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgcccctgaaaattcagtcatatcaaggggtacagcgtttttgctca	CRISPR spacer
ttttgcccctgaaaattcagtcatatcaaggggtacagcgtttttgctca	Protospacer
**************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

72271 : 85752

Bacillus_phage(40.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040108891.1\|72271_73378_-	hypothetical protein	A0A2R2ZGT9	Clostridioides_phage	1.5e-79	45.8
WP_052268881.1\|73496_74621_-	hypothetical protein	A0A219UQT8	Bacillus_phage	2.7e-52	33.9
WP_040108892.1\|74794_75430_-	hypothetical protein	NA	NA	NA	NA
WP_052268882.1\|75490_76600_-	hypothetical protein	A0A2R2ZGT9	Clostridioides_phage	1.4e-66	40.5
WP_052268883.1\|76724_77846_-	hypothetical protein	A0A2R2ZGT9	Clostridioides_phage	7.5e-63	38.4
WP_040108894.1\|77992_78433_-	hypothetical protein	NA	NA	NA	NA
WP_040108895.1\|78438_79161_-	ribonuclease H family protein	A0A2H4JH24	uncultured_Caudovirales_phage	5.6e-27	32.4
WP_052268884.1\|79183_79570_-	HNH endonuclease	G3MBM3	Bacillus_virus	1.0e-35	62.0
WP_040108898.1\|79616_80048_-	hypothetical protein	NA	NA	NA	NA
WP_040108900.1\|80183_80642_-	class I SAM-dependent methyltransferase	M4HNP8	Bacillus_phage	3.6e-56	67.8
WP_040108901.1\|80756_80963_-	hypothetical protein	NA	NA	NA	NA
WP_040108903.1\|81100_81754_-	hypothetical protein	A0A0H4TG47	Staphylococcus_phage	2.6e-07	24.2
WP_040108905.1\|81790_82999_-	RNA-splicing ligase RtcB	X2JMN6	Bacillus_phage	5.1e-142	61.4
WP_040108906.1\|83115_83571_-	hypothetical protein	NA	NA	NA	NA
WP_040108907.1\|83682_84219_-	hypothetical protein	NA	NA	NA	NA
WP_156129643.1\|84271_84415_-	hypothetical protein	NA	NA	NA	NA
WP_040108910.1\|84448_85171_-	hypothetical protein	NA	NA	NA	NA
WP_082029185.1\|85227_85752_-	NADAR family protein	A0A172JI41	Bacillus_phage	2.0e-34	53.4

DBSCAN-SWA_2

449472 : 456341

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052268964.1\|449472_450117_+	dihydrofolate reductase	A0A0Y0DBA9	Bacillus_phage	3.2e-18	32.9
WP_040109554.1\|450085_450727_+	hypothetical protein	NA	NA	NA	NA
WP_162182150.1\|450975_451392_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A060ABA3	Staphylococcus_phage	4.5e-13	34.2
WP_040109897.1\|451418_452561_+	hypothetical protein	U5PY35	Bacillus_phage	8.3e-134	60.7
WP_162182152.1\|452975_453965_+	ribonucleoside-diphosphate reductase subunit alpha	A0A1P8CX40	Bacillus_phage	2.6e-91	53.4
WP_040109555.1\|454028_455084_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4JMU8	Bacillus_phage	2.8e-83	49.3
WP_040109558.1\|455141_455399_+	hypothetical protein	NA	NA	NA	NA
WP_040109560.1\|455582_456341_+	nucleotidyltransferase domain-containing protein	A0A0K2FLN0	Brevibacillus_phage	3.4e-43	39.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009416

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009416_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009416_1

145321-145415

Orphan

Consensus_repeat	Method
TCCCGGAGGTGACCCGGAAATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009416_1

>merge|NZ_CP009416|1|145321-145415|CRISPRCasFinder
TCCCGGAGGTGACCCGGAAATTTGGGAATGTGACCCGAAAATCGCCAATCTGAAAAAACGTGATCCGAAAAATCCAGGAGGTGACCCGGAAATTT

>NZ_CP009416|1|1|145321-145415|CRISPRCasFinder
TCCCGGAGGTGACCCGGAAATTT	GGGAATGTGACCCGAAAATCGCCAATCTGAAAAAACGTGATCCGAAAAA
TCCAGGAGGTGACCCGGAAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009416.1\|WP_039806264.1\|140419_140668_+\|50S-ribosomal-protein-L7ae-like-protein	unknown	unknown	gnl\|CDD\|184174
NZ_CP009416.1\|WP_039806280.1\|147309_147933_+\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NZ_CP009416.1\|WP_039806289.1\|149785_150448_+\|30S-ribosomal-protein-S3	unknown	unknown	gnl\|CDD\|234722
NZ_CP009416.1\|WP_039806269.1\|141758_143837_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP009416.1\|WP_039806260.1\|132695_136256_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_CP009416.1\|WP_039806270.1\|143969_145160_+\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP009416.1\|WP_039806276.1\|146297_146606_+\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NZ_CP009416.1\|WP_039806285.1\|149142_149421_+\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NZ_CP009416.1\|WP_039806262.1\|136316_139916_+\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NZ_CP009416.1\|WP_039806278.1\|146649_147279_+\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NZ_CP009416.1\|WP_039806290.1\|150450_150885_+\|50S-ribosomal-protein-L16	unknown	unknown	gnl\|CDD\|236411
NZ_CP009416.1\|WP_039806267.1\|141236_141707_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP009416.1\|WP_039806275.1\|145579_146044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009416.1\|WP_039806283.1\|148251_149082_+\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NZ_CP009416.1\|WP_039806265.1\|140769_141189_+\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP009416.1\|WP_039806287.1\|149440_149782_+\|50S-ribosomal-protein-L22	unknown	unknown	gnl\|CDD\|234793
NZ_CP009416.1\|WP_039806257.1\|131434_131797_+\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NZ_CP009416.1\|WP_039806255.1\|130866_131367_+\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NZ_CP009416.1\|WP_039806258.1\|131870_132473_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP009416.1\|WP_039806282.1\|147932_148217_+\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|376308

Protein	Function_ID	Function_description	E-value
NZ_CP009416.1\|WP_039806264.1\|140419_140668_+\|50S-ribosomal-protein-L7ae-like-protein	gnl\|CDD\|184174	PRK13602, PRK13602, 50S ribosomal protein L7ae-like protein.	1.14452e-30
NZ_CP009416.1\|WP_039806287.1\|149440_149782_+\|50S-ribosomal-protein-L22	gnl\|CDD\|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	7.20632e-67
NZ_CP009416.1\|WP_039806289.1\|149785_150448_+\|30S-ribosomal-protein-S3	gnl\|CDD\|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	3.56377e-147
NZ_CP009416.1\|WP_039806269.1\|141758_143837_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP009416.1\|WP_039806260.1\|132695_136256_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP009416.1\|WP_039806270.1\|143969_145160_+\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NZ_CP009416.1\|WP_039806276.1\|146297_146606_+\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	3.3367e-71
NZ_CP009416.1\|WP_039806285.1\|149142_149421_+\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	6.68853e-64
NZ_CP009416.1\|WP_039806262.1\|136316_139916_+\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NZ_CP009416.1\|WP_039806278.1\|146649_147279_+\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	2.11775e-126
NZ_CP009416.1\|WP_039806290.1\|150450_150885_+\|50S-ribosomal-protein-L16	gnl\|CDD\|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	1.00008e-100
NZ_CP009416.1\|WP_039806267.1\|141236_141707_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	1.37237e-111
NZ_CP009416.1\|WP_039806280.1\|147309_147933_+\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	2.87536e-124
NZ_CP009416.1\|WP_039806283.1\|148251_149082_+\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NZ_CP009416.1\|WP_039806265.1\|140769_141189_+\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	2.46063e-86
NZ_CP009416.1\|WP_039806257.1\|131434_131797_+\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	4.77535e-48
NZ_CP009416.1\|WP_039806255.1\|130866_131367_+\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	3.92226e-71
NZ_CP009416.1\|WP_039806258.1\|131870_132473_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	4.74575e-78
NZ_CP009416.1\|WP_039806282.1\|147932_148217_+\|50S-ribosomal-protein-L23	gnl\|CDD\|376308	pfam00276, Ribosomal_L23, Ribosomal protein L23.	4.74792e-40

>NZ_CP009416.1|WP_039806270.1|143969_145160_+|elongation-factor-Tu
MAKEKFDRSKTHANIGTIGHVDHGKTTLTAAITTVLHKKYGRGSAMAYDQIDGAPEERERGITISTAHVEYETDTRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLSRQVGVPYLVVFMNKCDMVDDEELLELVEMEIRDLLSEYDFPGDDIPVIKGSALKALEGEAEWEEKIFELMEAVDSYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEIIGLSEEPKKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSRDDINRGQVLAKPGTITPHTNFKAEVYVLSKEEGGRHTPFFTNYRPQFYFRTTDVTGVCNLPEGVEMVMPGDNIEMTVELISPIAIEEGTKFSIREGGRTVGAGVVASIQK
>NZ_CP009416.1|WP_039806269.1|141758_143837_+|elongation-factor-G
MPREFSLKDTRNIGIMAHIDAGKTTATERILYYTGRIHKIGETHEGASQMDWMEQEQERGITITSAATTASWKGHRVNIIDTPGHVDFTVEVERSLRVLDGAVGVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGADFLYSVGTLHDRLQANAHPIQLPIGAEDEFEGIIDLVENVAYFYEDDLGTRTEKRDIPEEYKEQAEEYRGKLIEAVADLDEDLMMKYLEGEEMTVDEIKAAIRKGTCDVEFYPVICGSAFKNKGVQLLLDAVLDYLPSPLDVKPITGHVPESEEEVVRPASDEEPFSALAFKVMTDPYVGKLTFFRVYSGVLQSGSYVQNATKGKRERVGRILQMHANSREEIAEVYAGDIAAAVGLKDTTTGDTLCDEKSLVILESMEFPEPVISVAIEPKSKADQDKMSQALQKLQEEDPTFHAHTDQETGQTIIAGMGELHLDILVDRMKREFKVEANVGAPQVSYRETFRGSAQVEGKFVRQSGGRGQFGHVKIEFSPNEEGAGFEFENAIVGGSVPREYIPAVQQGLEDSLDNGVLAGYPLIDIKAKLYDGSYHDVDSSEMAFKIAASMALKNAVSKCNPVLLEPLMRVEVMIPEEYMGDIMGDVTARRGRVEGMSARGNTQIVKAFVPLAEMFGYATSLRSNTQGRGTFSMFFDHYEEVPKSVSEEIIKKNKGE
>NZ_CP009416.1|WP_039806267.1|141236_141707_+|30S-ribosomal-protein-S7
MPRKGAVAKRDVLPDPIHNSKLVTRLVNKIMIDGKKGTAQRILYSAFDIVQERSGKDALEVFDQALKNIMPVLEVRARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNTGASVKKREDMHKMAEANKAFAHYRW
>NZ_CP009416.1|WP_039806265.1|140769_141189_+|30S-ribosomal-protein-S12
MPTINQLVRKPRQSKSSKSDSPALNKGYNSFKKKATNLSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNQIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVDGRRQGRSLYGTKRPKPQK
>NZ_CP009416.1|WP_039806264.1|140419_140668_+|50S-ribosomal-protein-L7ae-like-protein
MSYEKVSQAKHIVVGSKQVVKALKAGSVREVIVADDVDSHVVDRVLLTAEEMNVNVTHVDSMKKLGKACGIEVGAAAVAITM
>NZ_CP009416.1|WP_039806262.1|136316_139916_+|DNA-directed-RNA-polymerase-subunit-beta'
MIDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWECHCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDMSPRALEEVIYFASYVVTEAGDTALEKKQLLSEKEYRAYREKYSGKFQAAMGAEAIRKLLQDIDLDKEAEMLKEELKTAQGQRRTRAIKRLEVVESFRNSGNLPDWMVLDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKEMALELFKPFVMKELVERGLAHNIKSAKRKIERVHDEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERKDAVGEGSVFRDADEVLLAYQNGYVHLHTRIAIHAGAVNKPTFTEEQNKKLLLTTVGKVIFNEILPEEFHYINEPTMENLEVNTPDKYFVDPTTNVKEHFKSADLVTPFKKGFLGSIIAEVFKRFHLTDTSKMLDSMKNLGFKHSTRAGITIGIADIVVLPEKQEILDDAQLKVDKVQKQFRRGLITEEERYERVISIWSAAKDVIQDKLMLTLDSLNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLRVSSLKDGTEVIEALEERLEGRYSNQTVKHPETGEVFVRRNELITEDIARQIVEAGVEEVSIRSAFTCNTRHGVCEKCYGKNLATGEKVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQATISEIDGVVTEITEGKDRQQDITVKGEVETKTYSAPYTARLKVAVDDVIERGQVLTEGSIDPKELIKIRDVAAVQEYLLKEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVIESGETELLPGSLLDVHQFMEANEQVLLEGKQPATGRPLILGITKASLETESFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQAEIENEDIPEEEAVSVE
>NZ_CP009416.1|WP_039806260.1|132695_136256_+|DNA-directed-RNA-polymerase-subunit-beta
MTGQLVQYGRHRQRRSYARISEVLDLPNLIEIQTASYDWFLEEGLREMFRDISPIEDFTGNLSLEFIDYSLGEPKYSVDESKERDVTYSAPLRVKVRLLNKETGEVKDQDVFMGDFPLMTETGTFIINGAERVIVSQLVRSPSVYFHDKMDKNGKRGFGATVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYIRNTLEKDNTESVEKALLEIYERLRPGEPPTVENAKSLLESRFFDPKRYDLANVGRYKMNKKLHIKNRLFGQVLAETLADPETGEILAEKGTTLDRRNLDKLIPNLESGVGFITYNQVGGVVEEDLTLQTIKIQVPNSEEGQEINVISNAYVDDSVKNITIADIVSSISYFFNLLHGVGLTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVDPETGRVTERIDYLTADEEDNYVVAQANARLGDDGSFLDEEVVSRFRGENTVFKRDRIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVSAKDSGAAVINKYEGIVERVQANQVWVRRLVDVDGNETEGDLDKYKLQKFIRSNQGTCYNQRPIVAVGDRVEKGEILADGPSMEAGELALGRNVLVGFMTWDGFNYEDAVIMSERLVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRVGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIILDVKIFNREDGDELPPGVNQLVRVYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLEMHMGMAARAMGIHIATPVFDGANEEDVWETIEEAGMSRDGKTVLYDGRTGDPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDSVPEPGVPESFKVLIKELQSLGMDVKMLSANDEEIEMRDLDDDDDIHQADALNIAPETEAPASETVGTKE
>NZ_CP009416.1|WP_039806258.1|131870_132473_+|class-I-SAM-dependent-methyltransferase
MSDHYYSKNPGVESKPNFWSFTLRGHKLKFKTDQGVFSKNEVDFGSRVLIEAFEEPDISGPVLDVGCGYGPIGLTLAKEMPERQIQMVDVNERALELAKENAEQNQIRNISIYESDCLDQVEEQSFAAILTNPPIRAGKQTVHRIFEQSAEKLPQGGTLWVVIQKKQGAPSAKAKLEALFSTVEVADKQKGYFIFKAKKD
>NZ_CP009416.1|WP_039806257.1|131434_131797_+|50S-ribosomal-protein-L7/L12
MTKEQMIEAIKEMTVLELNDLVKAIEEEFGVSAAAPVAVAGGGAGEAAAEKTEFDVVLTEAGAQKIKVIKVVREITGLGLKEAKEMVDNTPKAVKEGASKEEAEEIKAKLEEVGAGVEVK
>NZ_CP009416.1|WP_039806255.1|130866_131367_+|50S-ribosomal-protein-L10
MSSVIEQKKQLVTEIQEKLQSSASSVIVDYRGLSVAEVTELRKQLREAGVEFKVYKNSMTRRAAEAAGLEGLDESLTGPNAIAFSAEDVVAPAKILNNFAKDHEALELKAGVIEGSVASLEQVKALAELPSREGLLSMLLSVLTAPMRGFAVATQAVADQKEEQGA
>NZ_CP009416.1|WP_039806275.1|145579_146044_+|hypothetical-protein
MQPIHLWLSVYDRQTKKPKRNIQPILPIIINAYQASLNNAPINQKTITSLTEKSHLHEQYISQLKQWERGGYFTIEERRFGQMVSRIFHLDQKASAAFQSLKEYQDRIDLHIQTNEDLHYQTFSALLNTREQRGQTNHPWAEAASQLISNMKNQ
>NZ_CP009416.1|WP_039806276.1|146297_146606_+|30S-ribosomal-protein-S10
MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILRAVHKYKDAREQFEMRTHKRLVDIVNPTPQTVDALMRLDLPSGVDIEIKL
>NZ_CP009416.1|WP_039806278.1|146649_147279_+|50S-ribosomal-protein-L3
MTKGILGRKIGMTQVFAENGDLIPVTVIEATPNVVLQKKAVDTDGYESIQIGFEDKREKLANKPSKGHAAKAETAPKRFVREIRGVELGEYEVGQEVKVDIFAEGDVVDVTGVSKGKGFQGAIKRHNQSRGPMTHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEKITVQNLSIVKVDAERNLLLVKGNVPGPNKTLITVKSAIKAK
>NZ_CP009416.1|WP_039806280.1|147309_147933_+|50S-ribosomal-protein-L4
MPKVSVFKQDGSQAGDIELNESIFGIEPNNAVMFETVLMQRAAQRQGTHKVKNRSEVAGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVAEENILVLEALSFESPKTKEFASVLSSLSLDKKVLVVTEGLDENVALSGRNIPGVTVISATGVNVLDVLGHDKVVMTKGAVQKVEEVLA
>NZ_CP009416.1|WP_039806282.1|147932_148217_+|50S-ribosomal-protein-L23
MDARDIIKRPVITERSSDLMGEKKYTFEVDTRANKTQVKDAVQEIFGVDVEKVNIMNYKGKFKRMGRYTGYTNKRRKAIVTLTEDSKEIEFFEV
>NZ_CP009416.1|WP_039806283.1|148251_149082_+|50S-ribosomal-protein-L2
MAIKKYKPTSNGRRGMTASDFAEITTSKPEKSLLAPIKRKGGRNNQGKLTVRHQGGGHKRQYRVIDFARTKDGIPGRVATIEYDPNRSANIALINYVDGEKRYILAPKGLVVGMEVMSGPEADIKTGNALPLVNIPVGTVIHNIELKPGKGGQLVRSAGTSAQVLGKEGKYVLVRLNSGETRMILATCRATVGQVGNEQHELINIGKAGRSRWLGKRPTVRGSVMNPNDHPHGGGEGKAPIGRKSPMSPWGKPTLGYKTRKKTNKSDKFIVRRRKK
>NZ_CP009416.1|WP_039806285.1|149142_149421_+|30S-ribosomal-protein-S19
MGRSLKKGPFVDDHLMSKVEKLNETDKKQVVKTWSRRSTIFPNFIGHTIAVYDGRKHVPVYVTEDMVGHKLGEFAPSRTYKGHASDDKKTRR
>NZ_CP009416.1|WP_039806287.1|149440_149782_+|50S-ribosomal-protein-L22
MQAKAVANTVRIAPRKVRLVADLIRGKQVGEAVAILNHTPRAASPVIEKVLKSAVANAEHNYDMDINNLVISEAYVNEGPTLKRFRPRAQGRASAINKRTSHITIVVSEKKEG
>NZ_CP009416.1|WP_039806289.1|149785_150448_+|30S-ribosomal-protein-S3
MGQKVNPIGLRIGVIRDWESKWFAGKDYADLLHEDLKVRDYIEGRLKEASVSKVEIERAANRINITIHTAKPGMVIGKGGTEVEALRKDLNKITGKRVHINIVEIKRADLDAKLVGENIARQLENRVSFRRAQKQSIQRTMRAGAKGIKTQVSGRLGGADIARAEHYSEGTVPLHTLRADIDYAHVEADTTYGKLGVKVWIYRGEVLPTKNNKKSEEGGN
>NZ_CP009416.1|WP_039806290.1|150450_150885_+|50S-ribosomal-protein-L16
MLLPKRVKYRRVHRGKMRGQAKGGTEVSFGEYGLQALEASWITNRQIESARIAMTRYMKRGGKVWIKIFPHKPYTKKPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLASHKLPVKTKFVKREEIGGESNES

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Crispr_ID: NZ_CP009416_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009416_2

2513925-2514003

Orphan

Consensus_repeat	Method
AAAAACGAATCACTCAACTCCGTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009416_2

>merge|NZ_CP009416|2|2513925-2514003|CRISPRCasFinder
AAAAACGAATCACTCAACTCCGTCCCGGCATGCACCATTTTTAGAATCATTACAAAAACGAATCACTTAACTCCGTCCC

>NZ_CP009416|2|2|2513925-2514003|CRISPRCasFinder
AAAAACGAATCACTCAACTCCGTCCC	GGCATGCACCATTTTTAGAATCATTAC
AAAAACGAATCACTTAACTCCGTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009416.1\|WP_039810900.1\|2521713_2521953_-\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NZ_CP009416.1\|WP_052268712.1\|2522622_2522961_-\|YolD-like-family-protein	unknown	unknown	gnl\|CDD\|370161
NZ_CP009416.1\|WP_156129573.1\|2522258_2522432_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009416.1\|WP_039810890.1\|2518117_2519302_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP009416.1\|WP_039810865.1\|2501333_2503700_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226581
NZ_CP009416.1\|WP_039810889.1\|2517334_2518096_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP009416.1\|WP_173425114.1\|2513385_2513775_-\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|377847
NZ_CP009416.1\|WP_039810883.1\|2511191_2511425_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
NZ_CP009416.1\|WP_039810884.1\|2511591_2512545_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|130256
NZ_CP009416.1\|WP_039810902.1\|2523093_2524146_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|376559
NZ_CP009416.1\|WP_039810887.1\|2514058_2515354_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP009416.1\|WP_039810891.1\|2519443_2520454_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP009416.1\|WP_039810868.1\|2503723_2503939_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NZ_CP009416.1\|WP_039810885.1\|2512537_2513329_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130314
NZ_CP009416.1\|WP_039810880.1\|2509668_2510421_-\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561
NZ_CP009416.1\|WP_039810874.1\|2506688_2507153_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NZ_CP009416.1\|WP_039810893.1\|2520510_2521536_-\|central-glycolytic-genes-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP009416.1\|WP_039810877.1\|2507326_2509645_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP009416.1\|WP_052268711.1\|2504480_2505770_-\|50S-ribosome-binding-GTPase	unknown	unknown	gnl\|CDD\|226124
NZ_CP009416.1\|WP_039810888.1\|2515809_2517342_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463

Protein	Function_ID	Function_description	E-value
NZ_CP009416.1\|WP_039810900.1\|2521713_2521953_-\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	6.70846e-15
NZ_CP009416.1\|WP_052268712.1\|2522622_2522961_-\|YolD-like-family-protein	gnl\|CDD\|370161	pfam08863, YolD, YolD-like protein. Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.	4.03632e-15
NZ_CP009416.1\|WP_039810890.1\|2518117_2519302_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP009416.1\|WP_039810865.1\|2501333_2503700_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP009416.1\|WP_039810889.1\|2517334_2518096_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	7.02095e-148
NZ_CP009416.1\|WP_173425114.1\|2513385_2513775_-\|cell-wall-hydrolase	gnl\|CDD\|377847	pfam07486, Hydrolase_2, Cell Wall Hydrolase. These enzymes have been implicated in cell wall hydrolysis, most extensively in Bacillus subtilis. For instance Bacillus subtilis steB is expressed during sporulation as an inactive form and then deposited on the cell outer cortex. During germination the the enzyme is activated and hydrolyzes the cortex. A similar role is carried out by the partially redundant Bacillus subtilis CwlJ. It is not clear whether these enzymes are amidases or peptidases.	2.69445e-24
NZ_CP009416.1\|WP_039810883.1\|2511191_2511425_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	2.19838e-12
NZ_CP009416.1\|WP_039810884.1\|2511591_2512545_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	1.22367e-113
NZ_CP009416.1\|WP_039810902.1\|2523093_2524146_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|376559	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.	3.16515e-08
NZ_CP009416.1\|WP_039810887.1\|2514058_2515354_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP009416.1\|WP_039810891.1\|2519443_2520454_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP009416.1\|WP_039810868.1\|2503723_2503939_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.16032e-16
NZ_CP009416.1\|WP_039810885.1\|2512537_2513329_+\|ABC-transporter-permease	gnl\|CDD\|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	2.64511e-20
NZ_CP009416.1\|WP_039810880.1\|2509668_2510421_-\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	8.35158e-135
NZ_CP009416.1\|WP_039810874.1\|2506688_2507153_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	8.85155e-93
NZ_CP009416.1\|WP_039810893.1\|2520510_2521536_-\|central-glycolytic-genes-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	9.04849e-80
NZ_CP009416.1\|WP_039810877.1\|2507326_2509645_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP009416.1\|WP_052268711.1\|2504480_2505770_-\|50S-ribosome-binding-GTPase	gnl\|CDD\|226124	COG3596, COG3596, Predicted GTPase [General function prediction only].	3.39161e-10
NZ_CP009416.1\|WP_039810888.1\|2515809_2517342_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0

>NZ_CP009416.1|WP_173425114.1|2513385_2513775_-|cell-wall-hydrolase
MIRAETEGEGKLGMLMVGNVVVNRAVADCLDFRDVRTINDVIFQIQGNNYSFEAVQKGNLFYSLARDLERDLARQVVKNWRQHPSKYALWYFNPYAPCPPTWYDQLFSGQFKEHCFYEPQANTCESVYR
>NZ_CP009416.1|WP_039810885.1|2512537_2513329_+|ABC-transporter-permease
MNKQQGNFFSDTLVMTKRSIVTILRNPLIFIPNLAISMFFLFVYEAGLSGIANLPAFEGANYLAFILPVSIVSAAIGGAGGAGQALVKDLDNGFFSRLLLTPSSRLAIVLGPIIAGMLQLVIQAGLIICVGFILGLEVAGGALGVVVVLLLTLGWGLAFAGYSVGVALRAKNAQSAQAGTFIFFPLIFLSTTFVPYELIDAAWLKVAASINPVTYLFEAMRTVLIDGFTDTWPIVLGFLVIAGLCAITITFSAVSAKKAVSTD
>NZ_CP009416.1|WP_039810884.1|2511591_2512545_+|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein
MNGIIHVEHIEKTFKGDVKAVRDVSFDVAEGEFFAFLGPNGAGKSTTVQLLTTLLKPTAGKLEVAGYDVSKDPEKVRLSIGVALQETGIDPDLKGRELLEFQARLFGFSKKEAKKRAEELLELVGLTEDADRLSGKYSGGMRRRLDLAMTLVHQPKILFLDEPTTGLDPANRKAIWREIKRLNKEEGTTIFLTTQYLEEADQLADRISIINKGQIVATGTPAELKRTLGLDAIVLQFEEEEEAKSAYEAVSSDEYQTERVKNDVTILAENGTSILADVIRKLDERNLHPAQLNVKPPSLDDVFIQVTKDQKEGGLNE
>NZ_CP009416.1|WP_039810883.1|2511191_2511425_-|preprotein-translocase-subunit-SecG
METLLTVLLVIVCISLIVVVLLQSGKSAGLSGAISGGAEQLFGKQKARGIDLVLNRITIVLSVLFFVLTISVAFVLQ
>NZ_CP009416.1|WP_039810880.1|2509668_2510421_-|carboxylesterase
MKLNLPKPFTFEGGKRAVLLLHGFTGNSSDVRMLGRFLEKNGYTSHAPHYKGHGVPPEELVETGPEDWWKDVEAGYEHLKNQGYEEIAVAGLSLGGVFSLKLGYTAPVKGIVTMCAPMYIKSEEVMYKGVLEYAREFKKYEKKDEDQIEAEMKEFEKTPMQTLKALQELIGDVRNSVDMIYTPTFVVQGRHDHMINTDSANIIFEGIETDQKKLKWYEESGHVITLDKEKEQLHEDVLEFLDSLDWSVEK
>NZ_CP009416.1|WP_039810877.1|2507326_2509645_-|ribonuclease-R
MEESVMVMKERLLTFMREEAYKPLTVQELEESFGIHDSADFKDLVKSLVILEEKGEIVRTRSNRYGLPEKMNLVRGTLSGHAKGFAFLIPDEQGRNDIFIPPNESAHAMHGDKVMVRVSRESRGDREEGTVVRILERGTKQVVGTYTESKNFGFVMPDDKKMTSDIFVPKNASKGAVEGHKVIVEITAYPDGRNSAEGEVIQILGHKNDPGVDILSIIHKHGITIEFPDEVIQQANDVPDEIDPADLKDRRDLRDETTVTIDGADAKDLDDAISLTKLDNGNYKLGVHIADVSHYVTEGSPIDEEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEIDQNGGVIKHDIFQSVIRTNEKMTYSDVNKILVDEDEALIEKYEPLVPMFREMEKLAAILRGKRFGRGAIDFDFKEAKVLVDEEGNPTEIGIRERSVGEKLIEEFMLAANETVAEHFHWMNLPFIYRIHEDPKAEKLERFFEFITNFGITVKGTGNEIHPRALQEIIDDIQGTPEEMVISTMMLRSMQQAKYDENSLGHFGLATDFYTHFTSPIRRYPDLIVHRLIRTYLINRKVDEKTQKRWSEQLPEIAAHTSGRERRAVDAERETDELKKAEYMMDKIGEEFDGVISSVTNFGIFVELSNTIEGLVHVSYMTDDYYRFDERHMAMIGERTGNVYRIGDEIAIRVVNVNKDERAIDFEIVGMKGTPRVRRETARVVDSRGRGKDSNRDRKKKRKRDDGGKGDKKKFYKGAPKNKKNKKKKRK
>NZ_CP009416.1|WP_039810874.1|2506688_2507153_-|SsrA-binding-protein-SmpB
MPKGEGKLVAQNKKARHDYFIEETFEAGIVLQGTEIKSIRRGRVNLKDSFARISNGEVFLNNAHISPYEEGNRYNHDPLRERKLLLHKQQINKLIGLTKQQGYSIVPLKLYIKDGYAKVLIGLGKGKKKYDKRETLKKKDAKREVARALKERQR
>NZ_CP009416.1|WP_052268711.1|2504480_2505770_-|50S-ribosome-binding-GTPase
MAVEKVKNDIFEEAYKVLEDGVEQLNKDFNEKFIKPNIVLSGKTGVGKSTLINAVFGRPLADAGEGKPVSQALIEYSIPEVSVNLFDTKGIELDPVERKVSRESIVNKIKERASSSDVKDHMHVMWYCISNESKRIEDVEIEWVKEFSEYMHVIIVLTQTIENSETFQKEIEKELPEIQICRVLSEERQLIGDLKIPAHGLDKLVSETVKLLPDATKRAFTAAQKIKVEEKIESAKNLLQDRMGKYKNLAHLLEGLPIGVDIAGKAAIYLYIAHDIMKVMGIPVAKNYYKFAKYGKPLLQSIIIPFVVAEGGKGLGKTFAKEGGGEIGKKLTDIVIKLFGKNVFKGGSTIISPIVGFIFGTFNRKITEKIANAFIDVCAEFLRNEINYENLSEEEILEILSVQMNKKMIDIQDEIEQIVEDDEQSNDRQ
>NZ_CP009416.1|WP_039810868.1|2503723_2503939_-|helix-turn-helix-transcriptional-regulator
MTISYDKLWKLLIDKKMNKTDLKEQAGITYNIIARLGKCQPVNLESLYKICRCLECDIGDIMEFEIDEAVS
>NZ_CP009416.1|WP_039810865.1|2501333_2503700_-|DEAD/DEAH-box-helicase-family-protein
MGKSHLSEEDIKARYITPAVTNAGWDIKKQVRFEYAFTAGRIILRGNATARGKKKRADYVLFYKSNFPLAIIEAKDNNHSVGAGLQQAIEYAESLDVSYVYASNGDAFVEQNLITGEVRELMLDEFPSPEELYQRYLTDKNINRDEEKVMLEPYYYVPNYKTPRYYQMVAVNRTVDAVAKGQDRVLLVSATGTGKTYMTFQMIYRLWKSGLKKRILFLADRNVLVDQTISGDFKPFSGRMTKVKNKNLDSSYEIYLALYQQLTGEDGEETFRQFQPNFFDLIVIDECHRGSAKEESAWRKVLDYFSSATHIGCTATPVETKEASSFTYFGEPIYEYSLKQGINDGFLAPYKVVRIGLDKDLEGYRPEAGKVDKFGHQIEDREYNVKDFDRSIVIDDRTRVVASKITEFLKKTDRFSKTIVFCVDIEHAERMRQALINENRDLYAENNKYIMRITGDNDEGKAQLEHFIDEESPYPVIAVTSKLMTTGVDAKMCKLIVLENNINSMTEFKQIIGRGTRLLEEYGKTYFTIMDFRSSSRLFADPAFDGKPEVVIDIDGDDPVDEPDAGGGDEGHGDGSDGVKEPGSDYVSGGNDDFGDDEDDKPRKYYIGDVTVKVLSERVQYVDKDGKLITESLIDYTKKNILDQYAALDEFLKTWTAAEKKQAIIDELQDSGVLLDAVREELGKTELDDFDLICHLAYDKPPLTKKERAENVKKRHYLHKYSDVAQQVIEALLDKYANDGIREIEDTKVLQLKEFAQIGSPMKIVKAFGGKAAYVQAVRELENEIYYA
>NZ_CP009416.1|WP_039810887.1|2514058_2515354_-|phosphopyruvate-hydratase
MSFIVDVYAREVIDSRGNPTVEVEVFTESGAFGRALVPSGASTGEYEAVELRDGDKDRYLGKGVLKAVENVNNVIAPELIDAYSVLDQVSIDQAMIELDGTENKGKLGANAILGVSMAVAHAAADYLDVPLYQYLGGFNAKQLPVPMMNILNGGEHADNNVDIQEFMVMPVGAETFREGLRMGAEIFHSLKSVLKDKGLNTAVGDEGGFAPNLGSNEEALSTIIEAIEKAGYKPGEQVLLAMDVAASEIFNKEDGKYHLSGEGVVKSSEEMVNWYAEMADKYPIVSIEDGLDENDWDGFKLLTEKIGDKVQLVGDDLFVTNTEKLSRGIEQGIGNSILIKVNQIGTLTETFDAIEMAKRAGYTAVISHRSGETEDATIADIAVATNAGQIKTGAPSRTDRVAKYNQLLRIEDQLGATAQYLGVKTFYNLNK
>NZ_CP009416.1|WP_039810888.1|2515809_2517342_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MRNAPVALIILDGFALRDETKGNAVAKANKPNFDRYWETFPHNTLTASGEAVGLPGGQMGNSEVGHLNIGAGRTVYQNLTRINISIRDKEFYSIPEFLRAVDNAKRHNKALHIMGLLSDGGVHSHYEHLFALLELAKDNGLTKVYVHGFLDGRDVAPSSGLQYIADAEARMKEIGVGEFATISGRYYAMDRDNRWERVEKAYRVMVDGTGPSFSSAEEGIQASYDEEVYDEFVIPFVIEKNGAPVGRIESQDSVVFFNFRPDRAIQMSTALTNPDFKGFDLGQNKPENLQFVSFTHYSDKVRADVAFKAEDLKNTIGEVLSAEGLTQLRIAETEKYPHVTFFMSGGREEEFPGEERILIDSPKVATYDLKPEMSAYEVTDALLNAINEDRFDAILLNFANPDMVGHSGMLEPTVKAIEAVDECLGKIVDLIHEKGGHAIITADHGNSDEVITSDDKPMTAHTTNPVPVIVTKEGVELRSGGILGDLAPTMLDLLKVEKPEEMTGESLIKK
>NZ_CP009416.1|WP_039810889.1|2517334_2518096_-|triose-phosphate-isomerase
MRKPIIAGNWKMNKTASEAKAFTEEVASKVPSNEKVDAVICSPALFLANLVDLTKNSDAAVGAQNMHFEENGAFTGETSPVALQDLGVQYVILGHSERRDMFNETDESVNKKTHAAFKYSLTPIVCVGESLEQRENNETKDFVGGQVKAALEGLSEEQVKQTVIAYEPIWAIGTGKSSTAEDANEVCAHIRSVVASTVSEAAAEAVRIQYGGSVKPANIEEYMAQSDIDGALVGGASLEADSFLALVEAGANA
>NZ_CP009416.1|WP_039810890.1|2518117_2519302_-|phosphoglycerate-kinase
MNKKSMKDVDLKGKRVFCRVDFNVPMKDGEVTDDTRVRAALPTIKYLTEAGAKVILASHLGRPKGEVVEELRLAPVAAHLSSLIGKDVKTVEEAYGEKAEEAVASLEEGDILVLENVRFYPGEEKNDAELAKQFASLADVYVNDAFGAAHRAHASTAGIAEHIPAVSGLLMEKELDVLGKALSNPERPFTAIIGGAKVKDKIGVIDHLLDKVDNLIIGGGLAYTFVKAQGHEIGKSLLEEDKIDLAKEFMKKAEDKGVKFYMPVDIVVADDFSNDANIKEVPVDEIPSDWEGLDIGPKTRELYRDVILQSKLVIWNGPMGVFELDSFANGTKAVGQALADAQDTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKDLPGVVALNDK
>NZ_CP009416.1|WP_039810891.1|2519443_2520454_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVKIGINGFGRIGRNVYRAALNNPEVEVVAVNDLTDANMLAHLLQYDSVHGKLDQKVEVDGDDNLLVDGHKVKVLAERDPANLPWGELGVEIVIESTGIFTKGEAAAKHLEGGAKKVIISAPANGEDLTVVMGVNEDKYDPASHNVISNASCTTNCLAPFAKVLNDKFGIKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKAVSLVLPELEGKLNGMAMRVPTPNVSLVDLVAEFEQNVTADEINAALKEAAEGDLKGILAYSDEPLVSTDYNGNTNSSIVDGLSTMVLEDNMVKVLSWYDNETGYSNRCVDLAAYMAKKGL
>NZ_CP009416.1|WP_039810893.1|2520510_2521536_-|central-glycolytic-genes-regulator
MANVIDIQKRLVPDLLEEIQLKYQVLRSVRFLQPVGRRSLAQSLGMTERVLRKEVEQLKAQDLIHIHSSGMSLTKGGMEILIPLERMINEISGITLMEQSLKEMLKVKEVMIVPGDSDDSPWVKEELGRAAIQSMKPYVGTDTVIAVTGGTTMSAVAGMLTPDFATPETLFVPARGGIGEDVQNQANTICSTMALKSGARHRVLYVPDQVSREVYESITKEPAIKEVMSLITSADIVLHGIGDAHTMAKRRNTSEDHFKTIAEGQAVGEAFGYYFDVEGNIVHKVKTIGLQLKDLSNVPNVFAVAGGHSKAQAIRAYFKGAPQTSSTLITDEGAAKELLKG
>NZ_CP009416.1|WP_039810900.1|2521713_2521953_-|glutaredoxin-family-protein
MIVHYYTRKNCGLCDEGKLMLTLAQEDFGFEIEERDIDTSDEWTEKYGLMIPVIEVEGEIIQAGNIDFVTISKRFQKMS
>NZ_CP009416.1|WP_156129573.1|2522258_2522432_+|hypothetical-protein
MNHEIKEEYLATLNNLELKEARRLIHFLAGYAMVVGGEENVMEMILKEVSEIKEKGY
>NZ_CP009416.1|WP_052268712.1|2522622_2522961_-|YolD-like-family-protein
MDDQNKDRGTIKWTSLMLPEHVEKLRDFFEYEYDQEKQPIMDENMMELIFLTIQESMEFGQQVELKVFKGHKKETVTGQVKMIEYQQRYIVIEEKEHESIIKFDEVVGVNHA
>NZ_CP009416.1|WP_039810902.1|2523093_2524146_-|N-acetylmuramoyl-L-alanine-amidase
MGKKLIVLGHGYDRNGNFDPGATGNGTSEHEWLNGVFLASLRKYADGHDIDFYTQNMFANRDANTVTGYDDIIELHLDAASAAAKGGHVIIYHKYSPDAMDHRLGNMIANHFGLRGGKMFHGRDNLYNLNTFAKRRLSYRLLELGFITNKENMDYFKKHYDVIARDLISAVVNQRIETDEGKGSSVEEKTPVPSTEQYTGIVEYMNRNNMDSSFANRAKLAAQYGIVGYKGTAEQNNALLRKLQTGAAVKPVKSIEQMAQEIIDNKHGNGHENRRRSLGISAAEYAKVRAEVNRRASGAPAAPRKTISQMADDIINNPKVPNGHAARQKWLGVDSATYEKVRARVNQLLR

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Crispr_ID: NZ_CP009416_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009416_3

3169685-3169763

Orphan

Consensus_repeat	Method
TTTGTTTAATTATATTAAACTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009416_3

>merge|NZ_CP009416|3|3169685-3169763|CRISPRCasFinder
TTTGTTTAATTATATTAAACTTTTCTGTTGATTACAAAGAAAAGGCATGTTATGATTTGTTTAATTAAATTAAACTTTT

>NZ_CP009416|3|3|3169685-3169763|CRISPRCasFinder
TTTGTTTAATTATATTAAACTTTT	CTGTTGATTACAAAGAAAAGGCATGTTATGA
TTTGTTTAATTAAATTAAACTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009416.1\|WP_052268859.1\|3155875_3158716_+\|type-I-pullulanase	unknown	unknown	gnl\|CDD\|273975
NZ_CP009416.1\|WP_039812259.1\|3164079_3165450_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364
NZ_CP009416.1\|WP_039812277.1\|3175591_3175891_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009416.1\|WP_082029124.1\|3174231_3175518_-\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
NZ_CP009416.1\|WP_039813968.1\|3166733_3167933_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009416.1\|WP_039812290.1\|3181178_3182987_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP009416.1\|WP_039812283.1\|3179101_3180094_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP009416.1\|WP_039812270.1\|3171129_3172338_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP009416.1\|WP_039812279.1\|3176201_3178364_-\|malate-synthase-G	unknown	unknown	gnl\|CDD\|235097
NZ_CP009416.1\|WP_052268779.1\|3169779_3171075_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP009416.1\|WP_039812281.1\|3178533_3179088_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|376871
NZ_CP009416.1\|WP_039812251.1\|3158900_3159842_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_CP009416.1\|WP_039812256.1\|3162289_3163747_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|236518
NZ_CP009416.1\|WP_039812272.1\|3172422_3174066_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP009416.1\|WP_039812265.1\|3167952_3168183_-\|excisionase-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP009416.1\|WP_039812246.1\|3155433_3155637_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009416.1\|WP_039812254.1\|3160062_3161781_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP009416.1\|WP_039812267.1\|3168396_3169662_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP009416.1\|WP_162182143.1\|3165898_3166690_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP009416.1\|WP_039812287.1\|3180113_3181160_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|379721

Protein	Function_ID	Function_description	E-value
NZ_CP009416.1\|WP_052268859.1\|3155875_3158716_+\|type-I-pullulanase	gnl\|CDD\|273975	TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.	0
NZ_CP009416.1\|WP_039812259.1\|3164079_3165450_-\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
NZ_CP009416.1\|WP_039812281.1\|3178533_3179088_+\|biotin-transporter-BioY	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	2.53191e-35
NZ_CP009416.1\|WP_082029124.1\|3174231_3175518_-\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
NZ_CP009416.1\|WP_039812267.1\|3168396_3169662_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.39646e-10
NZ_CP009416.1\|WP_039812290.1\|3181178_3182987_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.98118e-161
NZ_CP009416.1\|WP_039812283.1\|3179101_3180094_-\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.26377e-31
NZ_CP009416.1\|WP_039812270.1\|3171129_3172338_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	7.87567e-52
NZ_CP009416.1\|WP_052268779.1\|3169779_3171075_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.7636e-62
NZ_CP009416.1\|WP_039812251.1\|3158900_3159842_+\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NZ_CP009416.1\|WP_039812256.1\|3162289_3163747_+\|alpha-amylase	gnl\|CDD\|236518	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed.	0
NZ_CP009416.1\|WP_039812272.1\|3172422_3174066_-\|PAS-domain-S-box-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.07538e-64
NZ_CP009416.1\|WP_039812265.1\|3167952_3168183_-\|excisionase-family-DNA-binding-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	1.07304e-09
NZ_CP009416.1\|WP_039812254.1\|3160062_3161781_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP009416.1\|WP_039812279.1\|3176201_3178364_-\|malate-synthase-G	gnl\|CDD\|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NZ_CP009416.1\|WP_162182143.1\|3165898_3166690_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	6.93749e-34
NZ_CP009416.1\|WP_039812287.1\|3180113_3181160_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|379721	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase. This family is likely to be an uncharacterized group of nucleotidyltransferases.	1.92029e-30

>NZ_CP009416.1|WP_039812267.1|3168396_3169662_-|helix-turn-helix-transcriptional-regulator
MSSLGDRIRKLRKEKKMTLVDVAGDAMSKGMLSLIENGRSNPSMESLQHIASQLGVNVQVLLAEESSEEMKQKLVEIEEMLQEVYQSKTLKEYNRLQREIRKILKQILDQELPKTYETGRFYEIAGRIDLNDEKIESGLNHISQAIECYEHLSLNHSVYKAQMRIVLNKFIQHEYKEALEQLLIYKEAYYKKELLADPLVQIESDHLEAVLLFAVGRYEEAAGILDSIISFSKRKNIYYLMDDVYRLVSFYSLLKGDEEKRRYALKKSRQFAEFTERYDGITSTMFMEIHYKNIYLKQHEEALQMLNDIRQNEEFAEMEESGYIYLERGSGNYGLGNIDQAYEELKQFEFPSFAHHPFDISMLATADAYMALCLIEKGDPETALVHAEKAKARVADLPETPYHHFIQETWEKTKANLNNKS
>NZ_CP009416.1|WP_039812265.1|3167952_3168183_-|excisionase-family-DNA-binding-protein
MYLTTKELAAYLDMSEQFIIQLIYENKIKAVHDGQQYLINKEQFNQHLKQVEKVKELIEEWKNEPIPESYDVKDED
>NZ_CP009416.1|WP_039813968.1|3166733_3167933_-|hypothetical-protein
MISFTRRLKEKLEMADLDQIWPGFRLTAYALYNREYVYLFNHPICQGEDEPLVFEWDKRFVGNTLILFEDVPTAIVNVEKPGSFEGNYAILMHELFHGYQTLMDEKRFPDELLGVQYPLLEENISLRLEERTVLRAAVDTTSKNEMLSHLKHFVLLREQRRELLGESLHYENLIETVEGPAWYAEMKAYASLQTGADAEGVYKEKLLQHEEAELHLRKSCYSSGLALCLLLDELYPEWKHRYFHEECTLYECIKEKAGLCDGTGSQCEYSMQGEASRIYRMVQESRLKTIQTFSDYDGYQLTIEGPMRAVFFDPMNMVNVDHQLLHQYFVTMQIQEQEYLINQPALTHYSESILHADRLQLNLTEKPLVNEKTVNIPGIGDFRGSMIEDGKKLRLMLAN
>NZ_CP009416.1|WP_162182143.1|3165898_3166690_+|NAD(P)-dependent-oxidoreductase
MGKVLLTGASGGLGTVLAHALKDDFELVLTNRSTSDELPEELPFIEADLNDYEAIEEIFKEHDIETVLHFGGLPVENEFEEILDANIRGTYHIYEAARTHGVKRIVYASSIHAVGFLPADGAPYNTTTETRPDTFYGLSKVYNEDLGKLYHDKFGMEVVNLRICGCVEKPDSREHLMIWLSYADLTQLVQKSITADINEVVTIYGISNNKQSFFTVDPDNPLGYAPVDDANEYLDELPDSFGHPDDYKYVGGHEFVKKDAAED
>NZ_CP009416.1|WP_039812259.1|3164079_3165450_-|aspartate-kinase
MKVVKFGGSSVASATQYKKVASILAADPERKAVIVSAPGKRHEGDTKTTDLLIRLAESVGERDFDESAFQAVLKRYQDIIDELELDSSLMTEVEGHLHEVISMYRQSKDRLLDGLKASGEDLNAKVMAAYLTSLGRKATYISPKRAGMIVTDEPGNAQILPESYPEIAKLRGVEGVLVIPGFFGYSYEGNIVTFPRGGSDITGSIIAAGLDATEYENFTDVDSIYCVSPKMVDQPRELKELTYREMRELAYSGFSVFHDEALQPVVHKKIPVCVKNTNRPEAKGTRIVASRELDGHPVIGIASDEGFCSINMTKYLMNRELGFGRKLLAILEDEGVSYEHTPSGIDNMSVILRSHQLYNGQEARVLNRIREELQVEDLYVERDLAMIMVVGEGMNQTIGIASKATQALAQAGANIKMINQGSSEVSMMFGVNVADVEKAVRSLYHIYFPAEVGQKA
>NZ_CP009416.1|WP_039812256.1|3162289_3163747_+|alpha-amylase
MERNHTMLQFFEWHVAADGDHWKRLKDAAPELKASGIDAVWIPPVTKGESPDDNGYGVYDLYDLGEFDQKGDVRTKYGTKDELHEAIQACHENDIQVYVDVVMNHKAGADEKETFQVIEVDAENRLEEISEPFEIEGWTKFTFPGRDGKYSDFQWNFDHFNGTDYDAREERTGFFKIVGEGKDWNDQVDDEFGNYDYLMFANIDYNHPEVRDEMINWGKWMSDTLDADGYRLDAIKHISHEFINEFIRQIKEHRDGNFYMVGEYWNEDIEACGNFLEATDYQLDLFDVQLHYKLHRISEEGRDADLSTLFEGTLVEEFPMNAVTFVDNHDSQPGESLESWVQDWFKQSAYALVLLRADGYPCVFYGDYFGIDGEDPIEDKREAIDPLIYARYHRAYGEQDDYFDHPATIGWVRRGVEEIEGSGCAVVVTVGDEGEKRMFVGEHRAGEEWTDYTNSIDEPVVIDDEGYGTFPVQAGSVSVWALPAE
>NZ_CP009416.1|WP_039812254.1|3160062_3161781_-|ABC-transporter-ATP-binding-protein
MLKRFFSYYKPHKKLFIADFSCAVVVGILELGFPLAVSWFIDSLLPEGNWQAITLVSFLLLFLYLSSTSLQYVVNYWGHKLGINIETDMRQELFEHVQRQSFSFFDNTKTGHIMSRITNDLFDIGEMAHHGPEDLFIAVMTFIGAFWIMLTINVKLALIAIIVVPFLIWLITYANIKMNTAWKMMYSNIAEVNARVEDSVSGARVVQSFTNEQHEIKRFTTDNRHYRQSKVGAYKVMAFSLSGMYIMTRLIVLVVLVFGAYLSLNNELSYGELVAFVLYINVLFKPIDKISALLEMYPKGMAGFKRFTDLLDQAPVITNRPHAKEVEHLEGEIEFDRVSFSYDDQKGVLSDISLKLNRGETVAFVGPSGAGKTTICSLIPRFYDVKEGAIKIDGIDVRDMTKESLRSQIGIVQQDVFLFTGTLRENIAYGKLDATEDEIMDAAKKANLQSVVDGLPLGYNTQIGERGLKLSGGQKQRIAIARMFLKNPSILILDEATSALDTETEAMIQGAIEELAKGRTTLVIAHRLATIRKADRVVVVTEEGIAEDGTHAELLEKDGIFANLHRVQYEQV
>NZ_CP009416.1|WP_039812251.1|3158900_3159842_+|L-lactate-dehydrogenase
MVKGNRVALIGTGFVGSSYAFGLLNQGVADELIMIDLNEEKAKGDVLDLNHGKVFAQQSLNISFGTYEDCKDVDIVVICAGANQKPGETRLQLVEKNLKIFHSIVTQVVDSGFDGIFLVATNPVDVLTYAVWKYSGFPKERVIGSGTILDTARFRYLLGEYFQVAPQNVHGYIIGEHGDSELPVYSSVDVGGVAVLDMIKKHPEYTQEDLDDIFVNVRDAAYQIINSKGATYYGIAMGLVRITRAILHNENSILTVSALMEGEYGEEDVYIGVPAVINRSGLREVIELNLSDKEKEQFAHSADVLREILKPHF
>NZ_CP009416.1|WP_052268859.1|3155875_3158716_+|type-I-pullulanase
MQPFASNTAQAESNTYSTLIVHYEEAPESTQDWNLWVWPEGGEGQVHEFTGEDEFGKIATVDLEGSHNRIGFIVRTDAWEKDGDDRWAETEAGVAEVWIKSGDDTIYTSPPDGEYREFPEFNKVDVTLHYYRFDGNYEGWNLWAWPGDGDGQEIQFTGEDDFGLTADFTVSSDELFNKVGFIVKKTEGENAWADQENGDRFITKINEDGTAEIWIVQSDKGVYYDTKYIDSTPRIVSATIDEVNEITLTTNLPIDTAADDPGITLNGLTIADIRPFDGTDPVTNKVTIETVEDIDLTQTYTIETDFFGDATVQVGKVVRSESFDDMYFYDGDDLGNTYTEEQTDFRLWAPTASEARLVLYDTWDAAEGKEIVMDAAEKGTWTASVEGDLHNQLYTYKVKIGDEWREAVDPYVRSTSVNGDKGAVLDLDRTNPEDWETFSKGENPEDATIYELHVRDLSIQPESGIENKGKYLGVTEKGTTGPEGYATGLDHILNLGVSHVQFLPIYDYRTVDETNLDTPQFNWGYDPKNYNTPEGSYSTDPYDPEVRVTELKEMIQTLHDEDLGVIMDVVYNHMYAVNESNFHQLVPGYYFRYNEDGSLANGTGVGNDTASERKMMQKFIVDSVSYWAEEYEMDGFRFDLMGIHDTDTMNEVREALDEIDPSIIVLGEGWDLNTPLDAELKANQKNAEDMDRVAHFNDTLRDGAKGSVWEDTDPGFINGKQGMEEIMRQSVAGGIDYDDSFATYRDPDQVVQYVEAHDNLTLWDKLEKTNPDATLEEMKSMHKLGSSIVLTSQGISFIHAGQEFMRTKGGDHNSYQSPDSVNQLDWERRAAFNDEVEYMAGLIDLRQNYDAFRLTNAEAINERLTFAASPANTIAYTLQEKKNRHLFVVHNANKEAVSVSLPGKGPWKVLVNSDEAGTEVLSVEKGKSVEVDGLSSMVLLKNGKMK
>NZ_CP009416.1|WP_039812246.1|3155433_3155637_-|hypothetical-protein
MKVIGYFLFGLMIATTIFLIAGPIVGGVIAFALLFTIQLAKPFEEKPAKDRVAEAYEKYLEERETGS
>NZ_CP009416.1|WP_052268779.1|3169779_3171075_+|MFS-transporter
MTDQQRLQKATRNLFFFTGGEFIGTIGAHIFMFGISFFVLTLTGSASSFALTFLCSMVPRIILSPIAGHIVDRLPRKKVVVTAHALMTMTMLLVFFYTLSYGLSMPVIYITAFLLAVFATFAGIGLTASIASFVDGPRIQRAVSLTQSSTSLATILGPVIGGIMYGFLSIEMFFLVHATAYAIALLCEINIDFSLYKEELPEDTQQNEPMITSLKAGIAFVKGHRVLLPIMLVALWVNFFFMAAVVGLPYIIIEVLGATSSQFGLVEAMIGAGTLALSVFLSIRKEFQKPIRTMRFGMISIGFLFALLALPLMISMGSPTFIIYYMAVNFLFGAAMIIINTPILVLMQKTTPEHYRGRVFGLLEMVASGISPIGLVLFGFLYDIVSPALIILITAVLLIGVTVIGLRPSKVDDEAAAEEVVEEKSVKVAEA
>NZ_CP009416.1|WP_039812270.1|3171129_3172338_-|FAD-binding-oxidoreductase
MTELHNGKLYWPETAERDVSFPALKEEQHVDVLIVGGGMAGALCAEELSHTQLKIAVVDKGGVGEGSSSANTGLLQYSNDKMLHEFIEEIGEEKAVTFYKMCLDAVEELQKVAGTLPGKVDFIRRPSLYYASDESDIEKLKNEYEALSEHGFEVEYFDADKIEELYGFRKPAALMTHGDAEVNPFRLIRSLFESAQTRGVQIYEHTPLENLQTVDGQHVLETADGKITAERVIYCTGYEAKSFADRFGGELNRTYAIATNPVEDLESWIYRALIWETKRPYFYMRTTEDGRIIAGGLDEDKMDADVSDEKLRDRGERLINRIKEHFPELELHADYVWSAAFGESEDGLPFIGKDPKHEGIYYCLGFGGNGTVYSKLGAKLLREMLFEEHDPDEAAIVDPGRD
>NZ_CP009416.1|WP_039812272.1|3172422_3174066_-|PAS-domain-S-box-protein
MKQRYENNIHPFITMMDRISDIVLILEVIPGPEFIYEFINEQGKDILGLNETILGRSFEDIYDPEHAAFIKEKYLEILHTKSHTHFELLGEDSWIGETTLNPILNEDGDVTHVLSITRDMTERKTLEDDLAKTSAELGLVWDHASDAIFFMNEDGSIYRVNRAFEEMLGYKEEEIKGVMIPPFFTAHHQEKHEAFLSSLFGGKAYENMERQRKRKDGSIIEVLASYRPVKLNNRSYAIVMYKDITHLKEVEKQAREREERFKSLFDANPDIIWAIDKKGRVENVNGAVTDILGYTKEEMLQLGRKHLMNYTDEQRIRYEDVVKRTLKGESVEYMTDMFHKKGNKVELKIKTLPIRVNGETIGIYEVGQDMTQRNRAERALKKMAFTDSLTGLPNRRHITEKIDEIIADAKENHREFAILYIDMDHFKEINDSFGHDAGDDLLKLFANRIRNEMNEDQLVARLGGDEFLVLLPNITDEADAVNKAGEVLSALSKPYRISGQQLDVTSSMGISIYPRHGKNKRELMKQADEALYSAKDNGKNMLRLYGK
>NZ_CP009416.1|WP_082029124.1|3174231_3175518_-|isocitrate-lyase
MTNTNNQQVEELQQNWQGERWEGVQRPYTPEDVIKLRGSVVIEQTLARMGAERLWKLMHEEDYINALGALTGNQAMQQVKAGLKAIYLSGWQVAADANLSGHMYPDQSLYPANSVPQVVKRINQTLQRADQIQQAEGTGDTYWFAPIVADMEAGFGGNLNVFELTKAMIEAGAGGVHLEDQLSSEKKCGHLGGKVLLPTQTAVKNLISARLAADVMGVPTVIIARTDANAANLITSDVDPYDHQFITGERTPEGFFRTNDGLDQAIARGLAYAPYADLIWCETSEPNLDEARRFAEAIHEKFPGKLLAYNCSPSFNWKKKLDDETIETFQQELGKMGYKFQFVTLAGFHSLNYGMFELARGYKARGMGAYSELQQAEFDAEENGYTATRHQREVGTGYFDEVSMVISGGTSSTTALSGSTEAEQFQKA
>NZ_CP009416.1|WP_039812277.1|3175591_3175891_-|hypothetical-protein
MQTQMTGTSNQELIEKWVTQQLMNGKTNREMDGTLFVYGNEAHRLHHHPTGEIEIVPEQISDVVVFRKREEPIELNHCRACGMEYDTFKDAIECCSDVD
>NZ_CP009416.1|WP_039812279.1|3176201_3178364_-|malate-synthase-G
MNKNGLQINPELYEFIEREALPGTGIKSEDFWNGFSEIIHAFALENNRLLHKREELQQKIDGWHQSHSWQNQREDYEQFLKEIGYLEDEVEDFQITTQNVDNEIAIQAGPQLVVPVNNARYAINAANARWGSLYDALYGTDVISEDNGAEKGSSYNPERGRLVIERAKQFLDQAVPLEKGSHADATKYVIEHGKLAVETANGKTGLAHPDAFKGHQGSADHPTAVLLQHNDLHIDIRINHKHPIGQTDPAGVKDVCIESALTTIMDCEDSVTAVDAEDKVVVYRNWLGLMKGTLSERFVKGGETIHRTLSDDRYYTSSDGGDLKLRGRSLLLIRNVGHLMTNSMILDRDGNEVPEGIADAVITSLIALHDINGSRRNSEQGSVYIVKPKMHGSAEVAFSNRLFNAVEDLLGLERHTIKIGVMDEERRTTLNLKNCIHAVKDRIVFINTGFLDRTGDEIHTSMQAGAVIRKGEMKQSDWLNAYEKSNVDNGLLCGLPGKAQIGKGMWAMPDRMKEMMEQKTAHLEAGGNTAWVPSPTAATLHALHYHQLKVKNIQESLRSQITDRKEALLTIPIASKQWTAEEIEQELENNAQGLLGYVVRWVEHGIGCSKVPDIHNVGLMEDRATLRISSQHMSNWLQHGIVTEQQILQVLEKMAKVVDQQNASDPVYQPMSANFEESVAFQAAKELIFEGTKQPSGYTEPILHKRRLEYKEKMMALKES
>NZ_CP009416.1|WP_039812281.1|3178533_3179088_+|biotin-transporter-BioY
MSSDRLRMYLFSSMLAAVTAIFAQIEIPLPLVPISGQTLAVGIAATILGSRYGAFSMVIYMMLGVIGLPVFAGFAGGAHIVAGPTGGYIVGFIAAAFFTGLFLEKTAFTYKMAIIANLIGMLVTLTFGTIWLKILLDLSWPAALAAGVTPFLAVGVIKALLAAWIGIAVRERLKSSQMSFGKAA
>NZ_CP009416.1|WP_039812283.1|3179101_3180094_-|metallophosphoesterase
MKKAVKIFLLCTPLFILLFALYVYWDNQRFIVTEQEIEMEGNLTDDIRILQISDLHEEVFGENQSDLAGRINELEYDILLFTGDMMNSIENGDTAPFFDLIRGIENKDRAYFVTGNTDPYPYEVTESSIEKAAYIQEMESLGVKYLESIEEININNQTLVLTDHELSVLNPDEPYTYVEGKPKIPYENAPAYKEYKQQQLNQVSQMLSETDQTVISVTHYPVADPQFEHIEKESGRYVFRDYDLILAGHYHGGQIRLPFIGALFVPEPWYQNAVLPPQDRVKGLWESHGIKQYVSTGLGSSNAVSFLNFRMFNPPEINLITLKSAASQTN
>NZ_CP009416.1|WP_039812287.1|3180113_3181160_-|nucleotidyltransferase-family-protein
MDVRQVLRLLYTEDHLQWQQYSRLTEFAESEGILPQVYTLLQRSEKYNELPGFAQDALKQSYKKNMFLLKWLSIESQKVVKRISDEEIKVIPLKGGFFAERYFGDACARATSDLDLLILPQDIEKTSALLQAAGFLKNEEEIDGHFHTSFYRPVKGSAIPFSVEVHWGFMRGDTTGIDMENIWENAVASILPYMYQLSDEDTFYFTCLHGWRHNMDSPKYFIDLIQVLQEAKEPINFQQLLERAKRERTYKRITFVLNHLVNETPFFFEIGFLESFSIKQKLYPHDTYRAFIQYQFFSYDHPKHTLNELKRWLIPNQTDLNMELEYKAASYLKGIRELYQKRLTGVLK
>NZ_CP009416.1|WP_039812290.1|3181178_3182987_-|ABC-transporter-ATP-binding-protein
MNWLTVERKEEIRQYLSVKNFKKIFRLLAPYVWRYKMSYLAMIVMLLIGIGVTLAFAWFMGNVIDAAINGNFERLRFLLIIGLLLVIYQIVSNFVWTYVETTSMNNIKKDLNQDLYAHILTLSSSDLNKDHSGKWMSHFTNDIHSVNAVVGSGLLNLIRFPIMITAALIYLMSISWKLSLISLSVAPLAIVAGAVFGLLLKRNGTIIHETISELTKKLNDTFHGMTVIKSFTLENLFHNQYRKQTEDLYRLELKEAKIQGTFYAGGQAVASLTFLASLLMGAFFVSQGSITAGMLLTFVNLVNLLVSPLTGFAGQWAGYQRSMTALERVVKVFDQTKTAEELPFRKDVIQISQGIDVKNIHFSYQEYSPLFQDLSFKLPAGQVTAFVGPSGAGKSTLFQLIMRFYEVNDGSIELDGKPINEMDVAVLRSAISYVPQDTFLFSGSVEENLKIAAPNATFEKMVQAARDANIHEFIMSLPEGYQTELGERGVRLSGGQRQRIAIARALLKDAPILLLDEATSALDSETEMLVKSALQRLMKGRTTIIIAHRLSTIQHADQILVFKEGQLVQAGTHAELKREGLYKELIQADQFTQRSIQRQDVI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009416_2	2.1\|2513951\|27\|NZ_CP009416\|CRISPRCasFinder	2513951-2513977	27	NZ_CP009416.1	2962696-2962722	1	0.963

1. spacer 2.1|2513951|27|NZ_CP009416|CRISPRCasFinder matches to position: 2962696-2962722, mismatch: 1, identity: 0.963

ggcatgcaccatttttagaatcattac	CRISPR spacer
ggcatgcaccatttttagaatcactac	Protospacer
***********************.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009416_2	2.1\|2513951\|27\|NZ_CP009416\|CRISPRCasFinder	2513951-2513977	27	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	139687-139713	4	0.852
NZ_CP009416_2	2.1\|2513951\|27\|NZ_CP009416\|CRISPRCasFinder	2513951-2513977	27	NZ_CP028515	Carboxydocella thermautotrophica strain 041T plasmid pCCELLA01, complete sequence	3263-3289	5	0.815
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_CP004876	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence	166508-166538	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NC_017203	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence	198781-198811	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NC_020384	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence	203007-203037	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_CP010578	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence	173409-173439	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_CP010579	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence	3880-3910	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_CP020005	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence	396745-396775	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	681782-681812	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_CP013056	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence	1320-1350	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_CP004861	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence	163947-163977	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_AP014866	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence	276978-277008	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_CP014853	Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence	278707-278737	8	0.742
NZ_CP009416_3	3.1\|3169709\|31\|NZ_CP009416\|CRISPRCasFinder	3169709-3169739	31	NZ_CP050185	Bacillus thuringiensis strain HER1410 plasmid pLUSID2, complete sequence	21921-21951	9	0.71

1. spacer 2.1|2513951|27|NZ_CP009416|CRISPRCasFinder matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 4, identity: 0.852

ggcatgcaccatttttagaatcattac	CRISPR spacer
cccattcaccatttttaaaatcattac	Protospacer
  *** ***********.*********

2. spacer 2.1|2513951|27|NZ_CP009416|CRISPRCasFinder matches to NZ_CP028515 (Carboxydocella thermautotrophica strain 041T plasmid pCCELLA01, complete sequence) position: , mismatch: 5, identity: 0.815

ggcatgcaccatttttagaatcattac	CRISPR spacer
actatgccccaattttagaatcattac	Protospacer
. .**** *** ***************

3. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

4. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

5. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

6. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

7. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_CP010579 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

8. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

9. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

10. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_CP013056 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

11. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

12. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_AP014866 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

13. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
gcacttattaaaaagaaaagccatgttataa	Protospacer
 ...* **** ********* ********.*

14. spacer 3.1|3169709|31|NZ_CP009416|CRISPRCasFinder matches to NZ_CP050185 (Bacillus thuringiensis strain HER1410 plasmid pLUSID2, complete sequence) position: , mismatch: 9, identity: 0.71

ctgttgattacaaagaaaaggcatgttatga	CRISPR spacer
atgttaatcacaaagaaaaggcattagctcc	Protospacer
 ****.**.***************    *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

91078 : 99656

Pandoravirus(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039806201.1\|91078_92002_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	2.0e-106	62.7
WP_039806203.1\|92283_93144_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_082029152.1\|93524_94859_+	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	8.2e-40	33.6
WP_039806206.1\|94855_95446_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.1e-68	60.1
WP_039806208.1\|95442_96285_+	aminodeoxychorismate lyase	NA	NA	NA	NA
WP_039806210.1\|96295_97108_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.3e-28	32.8
WP_039806212.1\|97109_97472_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_052268511.1\|97472_97994_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4VNV0	Pandoravirus	7.9e-15	39.7
WP_039806214.1\|98168_99656_+\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	5.4e-93	41.3

DBSCAN-SWA_2

1001110 : 1009709

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039807827.1\|1001110_1002406_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.5e-19	27.9
WP_039807829.1\|1002597_1003314_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	7.0e-46	41.0
WP_039807830.1\|1003310_1003565_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_039807833.1\|1003561_1004245_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_039807835.1\|1004228_1006442_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.8e-164	41.4
WP_039813286.1\|1006426_1007848_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.1e-50	34.7
WP_039807837.1\|1008091_1009126_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3ENV5	Synechococcus_phage	8.2e-64	46.5
WP_039807839.1\|1009118_1009709_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.1e-28	38.4

DBSCAN-SWA_3

1959084 : 1969653

Brevibacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082029054.1\|1959084_1960827_-	vitamin B12-dependent ribonucleotide reductase	A0A0K2CP92	Brevibacillus_phage	8.8e-119	42.9
WP_039809637.1\|1961066_1961960_-	DUF559 domain-containing protein	A0A172Q0C1	Acinetobacter_phage	5.2e-06	30.4
WP_082029055.1\|1962079_1962892_-	ribonucleotide reductase	A0A0K2CP92	Brevibacillus_phage	6.4e-56	50.4
WP_039809640.1\|1963276_1963657_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_039809643.1\|1963707_1965183_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	M4QFZ1	Prochlorococcus_phage	2.2e-86	40.1
WP_039809646.1\|1965175_1966519_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	E3SN07	Prochlorococcus_phage	1.1e-63	40.9
WP_039809648.1\|1966539_1967637_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_039809652.1\|1968018_1969653_+	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	2.4e-41	28.8

DBSCAN-SWA_4

2004854 : 2078017

Bacillus_phage(16.67%)

terminase,capsid,integrase,tail,tRNA,portal,protease,holin,head

attL 2028276:2028293|attR 2082614:2082631

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039809747.1\|2004854_2005553_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_156129556.1\|2005715_2006222_-	cytochrome c	NA	NA	NA	NA
WP_039809749.1\|2006380_2007523_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_039809751.1\|2007608_2008139_-	hypothetical protein	NA	NA	NA	NA
WP_039809752.1\|2008232_2009363_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.4e-37	38.5
WP_039809754.1\|2009385_2011191_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.3e-51	33.3
WP_039809756.1\|2011257_2011707_-	DUF188 domain-containing protein	NA	NA	NA	NA
WP_039809758.1\|2012105_2012915_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_173425086.1\|2012928_2013564_-	HTH domain-containing protein	NA	NA	NA	NA
WP_173425112.1\|2013942_2015310_+\|tRNA	glycine--tRNA ligase	A0A1V0SIF1	Klosneuvirus	1.4e-50	29.2
WP_039809766.1\|2015348_2016119_-	DNA repair protein RecO	NA	NA	NA	NA
WP_039809768.1\|2016143_2017049_-	GTPase Era	NA	NA	NA	NA
WP_039809770.1\|2017041_2017440_-	cytidine deaminase	NA	NA	NA	NA
WP_039809773.1\|2017572_2017938_-	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_039809776.1\|2017940_2018417_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_039809779.1\|2018413_2020561_-	HD family phosphohydrolase	NA	NA	NA	NA
WP_039809784.1\|2020761_2021727_-	PhoH family protein	A0A0S0MVD6	Pseudomonas_phage	8.5e-47	45.8
WP_039809787.1\|2021723_2022473_-	sporulation protein YqfD	NA	NA	NA	NA
WP_052268673.1\|2022465_2022750_-	hypothetical protein	NA	NA	NA	NA
WP_039809791.1\|2022804_2023236_-	hypothetical protein	NA	NA	NA	NA
WP_039809794.1\|2023253_2024252_-	flotillin-like protein FloA	NA	NA	NA	NA
WP_082029166.1\|2024270_2025560_-	nodulation protein NfeD	Q9T1F7	Lactobacillus_phage	2.2e-05	38.3
WP_039813576.1\|2025772_2026219_-	GatB/YqeY domain-containing protein	G3MAQ0	Bacillus_virus	5.5e-17	40.5
WP_039809800.1\|2026239_2026413_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_039809803.1\|2026665_2027337_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_039809806.1\|2027502_2028840_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
2028276:2028293	attL	NA	NA	NA	NA
WP_039809809.1\|2028844_2029597_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_039809812.1\|2029603_2030548_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_039809814.1\|2030609_2031728_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	8.1e-25	27.4
WP_039809819.1\|2031843_2033670_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.0e-141	49.2
WP_039809822.1\|2033695_2034256_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_039809824.1\|2034369_2035410_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_039809827.1\|2035502_2036636_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_039809831.1\|2036948_2037128_+	hypothetical protein	NA	NA	NA	NA
WP_039809833.1\|2037319_2037622_-	hypothetical protein	NA	NA	NA	NA
WP_052268674.1\|2037676_2038015_-	YolD-like family protein	O64030	Bacillus_phage	2.4e-12	36.4
WP_039809835.1\|2038015_2038237_-	hypothetical protein	NA	NA	NA	NA
WP_039809837.1\|2038338_2038788_-	hypothetical protein	NA	NA	NA	NA
WP_039809838.1\|2038807_2039692_-	hypothetical protein	NA	NA	NA	NA
WP_052268675.1\|2039812_2040778_-	M15 family metallopeptidase	U5PWQ2	Bacillus_phage	1.2e-53	53.5
WP_039809839.1\|2040774_2041206_-\|holin	phage holin family protein	S6AVT9	Thermus_phage	1.8e-33	52.2
WP_039809841.1\|2041340_2042510_-	hypothetical protein	NA	NA	NA	NA
WP_039809843.1\|2042604_2042820_-	hypothetical protein	NA	NA	NA	NA
WP_156129557.1\|2042875_2043013_-	hypothetical protein	NA	NA	NA	NA
WP_052268676.1\|2043024_2047362_-\|tail	phage tail protein	A0A0N9BA91	Vibrio_phage	3.3e-74	48.1
WP_039809845.1\|2047358_2048780_-\|tail	phage tail family protein	A0A0S2GLF9	Bacillus_phage	5.6e-55	31.5
WP_052268677.1\|2048779_2052133_-\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	1.1e-82	38.7
WP_039809847.1\|2052149_2052335_-	hypothetical protein	NA	NA	NA	NA
WP_039809849.1\|2052331_2052682_-	hypothetical protein	NA	NA	NA	NA
WP_052268678.1\|2052702_2053281_-	hypothetical protein	E2ELJ1	Clostridium_phage	1.0e-15	31.1
WP_039809852.1\|2053293_2053629_-	hypothetical protein	NA	NA	NA	NA
WP_039809855.1\|2053625_2054024_-	hypothetical protein	NA	NA	NA	NA
WP_039809858.1\|2054024_2054357_-\|head	phage head closure protein	NA	NA	NA	NA
WP_039809861.1\|2054353_2054662_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBP7	Clostridium_phage	1.2e-10	41.1
WP_039809864.1\|2054698_2055043_-	hypothetical protein	NA	NA	NA	NA
WP_039813589.1\|2055071_2056277_-\|capsid	phage major capsid protein	W8CYN2	Bacillus_phage	1.7e-132	63.8
WP_052268844.1\|2056394_2057144_-\|protease	Clp protease ClpP	A0A2H4JC29	uncultured_Caudovirales_phage	5.2e-76	57.3
WP_156129621.1\|2057157_2058396_-\|portal	phage portal protein	A0A2H4J371	uncultured_Caudovirales_phage	7.6e-157	66.6
WP_039809871.1\|2058649_2060350_-\|terminase	terminase large subunit	A0A0S2GLF0	Bacillus_phage	5.6e-187	56.6
WP_039809874.1\|2060349_2060865_-\|terminase	phage terminase small subunit P27 family	Q2I8G1	Bacillus_phage	3.3e-50	61.4
WP_039809875.1\|2060976_2061339_-	HNH endonuclease	A0A1U7Q1S7	Geobacillus_virus	2.3e-21	40.8
WP_039809878.1\|2061331_2061607_-	hypothetical protein	NA	NA	NA	NA
WP_039809879.1\|2061691_2061985_-	hypothetical protein	NA	NA	NA	NA
WP_039809881.1\|2062013_2062772_-	hypothetical protein	NA	NA	NA	NA
WP_039809883.1\|2062942_2063434_-	hypothetical protein	NA	NA	NA	NA
WP_052268679.1\|2063536_2064052_-	hypothetical protein	S5MUU9	Brevibacillus_phage	7.5e-18	36.3
WP_039809885.1\|2064064_2064259_-	hypothetical protein	NA	NA	NA	NA
WP_039809887.1\|2064354_2064543_-	DUF3954 domain-containing protein	NA	NA	NA	NA
WP_156129558.1\|2064532_2064706_-	hypothetical protein	NA	NA	NA	NA
WP_039809889.1\|2064699_2065005_-	hypothetical protein	NA	NA	NA	NA
WP_039809891.1\|2065116_2065398_-	hypothetical protein	NA	NA	NA	NA
WP_039809893.1\|2065412_2066123_-	hypothetical protein	NA	NA	NA	NA
WP_173425087.1\|2066125_2066299_-	hypothetical protein	A0A2H4J246	uncultured_Caudovirales_phage	8.9e-16	78.4
WP_156129559.1\|2066486_2066663_-	hypothetical protein	NA	NA	NA	NA
WP_039809895.1\|2066694_2066949_-	hypothetical protein	NA	NA	NA	NA
WP_039809897.1\|2066945_2067158_-	hypothetical protein	NA	NA	NA	NA
WP_156129560.1\|2067154_2067328_-	hypothetical protein	NA	NA	NA	NA
WP_039809900.1\|2067397_2068219_-	DNA adenine methylase	Q8W5X3	Listeria_phage	1.8e-69	49.4
WP_052268680.1\|2068200_2068719_-	Holliday junction resolvase RecU	NA	NA	NA	NA
WP_039809903.1\|2068666_2068966_-	hypothetical protein	NA	NA	NA	NA
WP_039809906.1\|2068943_2069213_-	hypothetical protein	NA	NA	NA	NA
WP_156129561.1\|2069235_2070099_-	ATP-binding protein	A8ATL1	Listeria_phage	2.8e-33	36.1
WP_052268681.1\|2070040_2070865_-	phage replisome organizer N-terminal domain-containing protein	V5US04	Oenococcus_phage	1.6e-49	41.4
WP_039809911.1\|2070883_2071597_-	phage antirepressor KilAC domain-containing protein	U6E9A9	Streptococcus_phage	1.3e-76	58.9
WP_039809915.1\|2071709_2071898_-	hypothetical protein	NA	NA	NA	NA
WP_156129562.1\|2072230_2072440_-	hypothetical protein	NA	NA	NA	NA
WP_156129563.1\|2072420_2072615_-	DUF3797 domain-containing protein	A0A1J1J8Z9	Escherichia_phage	1.0e-07	39.6
WP_039809920.1\|2072616_2072874_-	IDEAL domain-containing protein	NA	NA	NA	NA
WP_039809923.1\|2072896_2073121_-	hypothetical protein	NA	NA	NA	NA
WP_039809927.1\|2073134_2073461_-	DUF771 domain-containing protein	Q38331	Lactococcus_phage	6.9e-09	32.3
WP_039813603.1\|2073529_2073754_-	helix-turn-helix domain-containing protein	A0A2I7SCU5	Paenibacillus_phage	1.3e-14	60.3
WP_039809930.1\|2073755_2073989_-	helix-turn-helix domain-containing protein	A0A2H4JEA4	uncultured_Caudovirales_phage	2.0e-10	46.4
WP_039809933.1\|2074130_2074457_+	helix-turn-helix transcriptional regulator	A0A141E0Q5	Streptococcus_phage	4.9e-15	53.3
WP_052268683.1\|2074484_2074943_+	ImmA/IrrE family metallo-endopeptidase	A0A1W6JQ23	Staphylococcus_phage	3.0e-18	36.9
WP_039809936.1\|2074939_2076118_+\|integrase	site-specific integrase	A0A2I7SCV1	Paenibacillus_phage	3.3e-109	51.0
WP_039809940.1\|2076187_2078017_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	2.3e-21	24.6
2082614:2082631	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2470129 : 2543570

Paenibacillus_phage(17.24%)

terminase,capsid,tail,portal,protease,holin,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082029083.1\|2470129_2470279_+\|coat	spore coat protein	NA	NA	NA	NA
WP_082029084.1\|2470272_2470422_+	hypothetical protein	NA	NA	NA	NA
WP_052268851.1\|2470476_2470719_-	DUF2573 family protein	NA	NA	NA	NA
WP_039810800.1\|2471007_2471829_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.4e-12	27.5
WP_039810803.1\|2472285_2472603_+	thioredoxin family protein	A0A1X9I9P5	Staphylococcus_phage	2.0e-05	32.6
WP_039810805.1\|2472621_2473374_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_039810808.1\|2473710_2476788_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_039810811.1\|2476912_2477953_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_039810814.1\|2477983_2478685_-	DsbA family oxidoreductase	NA	NA	NA	NA
WP_039810817.1\|2478987_2480685_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_039810820.1\|2480916_2481318_+	YjbQ family protein	NA	NA	NA	NA
WP_052268708.1\|2481330_2482227_+	EamA family transporter	NA	NA	NA	NA
WP_039810823.1\|2482258_2482624_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_039810825.1\|2482990_2484649_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_039810828.1\|2484738_2485017_-	hypothetical protein	NA	NA	NA	NA
WP_039810830.1\|2485022_2486777_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_039810833.1\|2486788_2487151_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_039810835.1\|2487233_2487563_-	winged helix-turn-helix transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	4.1e-09	42.0
WP_039810837.1\|2488051_2489068_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_039810840.1\|2489060_2490455_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_039810842.1\|2494230_2495142_-	hypothetical protein	NA	NA	NA	NA
WP_052268709.1\|2495157_2496423_-	FRG domain-containing protein	NA	NA	NA	NA
WP_039810845.1\|2496804_2497461_-	hypothetical protein	NA	NA	NA	NA
WP_052268710.1\|2497587_2498343_-	hypothetical protein	NA	NA	NA	NA
WP_039810854.1\|2498371_2499829_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_039810861.1\|2499830_2501300_-	SAM-dependent DNA methyltransferase	A0A2H4UVW8	Bodo_saltans_virus	2.2e-17	26.4
WP_039810865.1\|2501333_2503700_-	DEAD/DEAH box helicase family protein	A0A0S0N4Y4	Pseudomonas_phage	4.5e-09	23.1
WP_039810868.1\|2503723_2503939_-	helix-turn-helix transcriptional regulator	A0A2K5B261	Erysipelothrix_phage	5.7e-12	51.5
WP_052268711.1\|2504480_2505770_-	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_039810874.1\|2506688_2507153_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.6e-51	69.4
WP_039810877.1\|2507326_2509645_-	ribonuclease R	Q0GXV6	Lactococcus_phage	8.8e-90	39.3
WP_039810880.1\|2509668_2510421_-	carboxylesterase	NA	NA	NA	NA
WP_039810883.1\|2511191_2511425_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_039810884.1\|2511591_2512545_+	daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.1e-21	29.5
WP_039810885.1\|2512537_2513329_+	ABC transporter permease	NA	NA	NA	NA
WP_173425114.1\|2513385_2513775_-	cell wall hydrolase	NA	NA	NA	NA
WP_039810887.1\|2514058_2515354_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.4e-169	69.5
WP_039810888.1\|2515809_2517342_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_039810889.1\|2517334_2518096_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_039810890.1\|2518117_2519302_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_039810891.1\|2519443_2520454_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_039810893.1\|2520510_2521536_-	central glycolytic genes regulator	NA	NA	NA	NA
WP_039810900.1\|2521713_2521953_-	glutaredoxin family protein	NA	NA	NA	NA
WP_156129573.1\|2522258_2522432_+	hypothetical protein	NA	NA	NA	NA
WP_052268712.1\|2522622_2522961_-	YolD-like family protein	A0A1P8CWP2	Bacillus_phage	1.7e-10	32.7
WP_039810902.1\|2523093_2524146_-	N-acetylmuramoyl-L-alanine amidase	A0A1D6Z273	Staphylococcus_phage	1.8e-18	32.2
WP_039810903.1\|2524148_2524364_-\|holin	phage holin	A0A0H3UYV6	Geobacillus_virus	1.8e-10	49.2
WP_039810905.1\|2524376_2524796_-	hypothetical protein	NA	NA	NA	NA
WP_156129574.1\|2524747_2525176_-	hypothetical protein	NA	NA	NA	NA
WP_039810908.1\|2525462_2526254_-	SEC-C domain-containing protein	NA	NA	NA	NA
WP_052268713.1\|2526486_2528247_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_039810909.1\|2528246_2528447_-	hypothetical protein	NA	NA	NA	NA
WP_052268714.1\|2528451_2530302_-\|tail	phage tail protein	A0A0U4JID8	Exiguobacterium_phage	4.4e-84	37.4
WP_052268715.1\|2530314_2531133_-\|tail	phage tail family protein	A6M962	Geobacillus_virus	8.8e-37	39.2
WP_052268716.1\|2531129_2533919_-\|tail	phage tail tape measure protein	A0A2H4PA19	Gordonia_phage	1.4e-36	38.3
WP_039810910.1\|2534427_2534775_-	hypothetical protein	A6XMK4	Bacillus_virus	5.2e-31	56.5
WP_082029086.1\|2534800_2535430_-\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	1.8e-66	69.2
WP_039810911.1\|2535432_2535750_-	hypothetical protein	A0A0U4JNN6	Exiguobacterium_phage	2.4e-27	61.5
WP_039810912.1\|2535746_2536103_-	HK97 gp10 family phage protein	Q0H235	Geobacillus_phage	1.4e-23	45.8
WP_039810913.1\|2536095_2536398_-	hypothetical protein	NA	NA	NA	NA
WP_039810914.1\|2536399_2536687_-	DNA-packaging protein	R9TMB7	Paenibacillus_phage	2.0e-20	52.6
WP_039810915.1\|2536689_2536959_-	hypothetical protein	A6XMJ7	Bacillus_virus	3.3e-09	42.2
WP_039810916.1\|2536976_2538212_-\|capsid	phage major capsid protein	R9TQG7	Paenibacillus_phage	2.1e-151	65.9
WP_052268717.1\|2538208_2538919_-\|protease	Clp protease ClpP	R9TLM7	Paenibacillus_phage	1.6e-55	51.7
WP_156129625.1\|2538950_2540096_-\|portal	phage portal protein	A0A290G4I4	Caldibacillus_phage	4.7e-113	53.5
WP_039810918.1\|2540156_2541851_-\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	1.4e-249	71.6
WP_039810921.1\|2541847_2542216_-	hypothetical protein	R9TQ46	Paenibacillus_phage	1.5e-31	66.0
WP_082029087.1\|2542343_2542646_-	HNH endonuclease	R9TNN2	Paenibacillus_phage	7.2e-29	63.4
WP_039810924.1\|2542808_2543228_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_039810927.1\|2543264_2543570_-	hypothetical protein	A0A2R3UAY3	Myoviridae_environmental_samples	1.4e-27	55.3

DBSCAN-SWA_6

2547017 : 2562449

Bacillus_phage(15.38%)

integrase

attL 2548332:2548348|attR 2562011:2562027

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039810951.1\|2547017_2547599_-	dUTP diphosphatase	A0A2P1JTZ1	Anoxybacillus_phage	6.0e-40	49.5
WP_162182136.1\|2547576_2547783_-	hypothetical protein	NA	NA	NA	NA
WP_052268719.1\|2547987_2548503_-	Holliday junction resolvase RecU	A0A2H4J3A4	uncultured_Caudovirales_phage	2.7e-23	37.3
2548332:2548348	attL	NA	NA	NA	NA
WP_039810956.1\|2548480_2548750_-	hypothetical protein	NA	NA	NA	NA
WP_039810958.1\|2548727_2548997_-	hypothetical protein	NA	NA	NA	NA
WP_052268720.1\|2549019_2549739_-	ATP-binding protein	A8ATL1	Listeria_phage	3.4e-32	35.3
WP_052268721.1\|2549821_2550646_-	phage replisome organizer N-terminal domain-containing protein	V5US04	Oenococcus_phage	5.9e-49	38.8
WP_039810961.1\|2550720_2551077_-	hypothetical protein	NA	NA	NA	NA
WP_039810962.1\|2551107_2551791_-	Rha family transcriptional regulator	A0A288WFT2	Bacillus_phage	1.2e-34	35.4
WP_156129578.1\|2552082_2552253_-	hypothetical protein	NA	NA	NA	NA
WP_039810965.1\|2552249_2552603_-	hypothetical protein	NA	NA	NA	NA
WP_173425093.1\|2552614_2552770_-	hypothetical protein	NA	NA	NA	NA
WP_039810968.1\|2552774_2553095_-	DUF771 domain-containing protein	Q4ZC28	Staphylococcus_virus	5.7e-08	29.3
WP_039810971.1\|2553167_2553380_-	hypothetical protein	NA	NA	NA	NA
WP_052268722.1\|2553543_2554149_+	hypothetical protein	NA	NA	NA	NA
WP_039813787.1\|2554153_2554609_+	hypothetical protein	A0A0A7RVV2	Clostridium_phage	4.5e-14	33.8
WP_039810973.1\|2554692_2555808_+\|integrase	tyrosine-type recombinase/integrase	Q5YAA6	Bacillus_phage	3.1e-93	48.0
WP_039810974.1\|2556250_2556853_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	8.7e-58	58.9
WP_039810977.1\|2557107_2557365_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_039810980.1\|2557382_2558330_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	4.3e-51	38.8
WP_039810983.1\|2558359_2559331_-	YvcK family protein	A1IMD5	Streptococcus_phage	9.4e-62	40.9
WP_039810985.1\|2559327_2560212_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	5.4e-08	29.8
WP_039810988.1\|2560226_2560685_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_039810991.1\|2561498_2562449_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	8.8e-89	54.7
2562011:2562027	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2988215 : 2996565

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039811836.1\|2988215_2989772_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.0e-54	30.0
WP_039811838.1\|2990027_2990837_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	5.1e-37	36.6
WP_039811840.1\|2991306_2991654_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039811842.1\|2991672_2992968_+	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	4.1e-153	67.1
WP_039811843.1\|2993365_2993785_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	1.4e-43	62.7
WP_039811846.1\|2993883_2994168_+	hypothetical protein	NA	NA	NA	NA
WP_039811849.1\|2994321_2995185_-	permease	NA	NA	NA	NA
WP_039811852.1\|2995268_2995589_-	winged helix-turn-helix transcriptional regulator	A0A218MNF3	uncultured_virus	5.0e-12	46.8
WP_039811856.1\|2995758_2996565_+	alpha/beta hydrolase	A0A222ZQ08	Mycobacterium_phage	2.8e-11	25.9

DBSCAN-SWA_8

3189606 : 3199981

Catovirus(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052268782.1\|3189606_3191574_-	asparagine synthetase B	F2Y2L7	Organic_Lake_phycodnavirus	1.2e-10	24.9
WP_052268783.1\|3191724_3193086_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	5.7e-73	37.5
WP_039812309.1\|3193098_3194055_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	3.1e-81	48.9
WP_039812312.1\|3194066_3195131_-	glycosyltransferase	A0A1V0SAH6	Catovirus	5.2e-05	32.2
WP_052268784.1\|3195144_3196203_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.8e-10	29.4
WP_039812317.1\|3196205_3197159_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.0e-12	31.3
WP_039812320.1\|3197155_3198220_-	hypothetical protein	NA	NA	NA	NA
WP_039813991.1\|3198220_3199981_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.2e-24	26.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009417

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009416

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection