CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009559	Salmonella enterica subsp. enterica serovar Paratyphi A strain CMCC 50503 chromosome, complete genome	3 crisprs	c2c9_V-U4,DEDDh,cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	0	5	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009559_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009559_1

2212109-2212209

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009559_1

>merge|NZ_CP009559|1|2212109-2212209|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_CP009559|1|1|2212109-2212209|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009559.1\|WP_000643280.1\|2220177_2220753_-\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP009559.1\|WP_000131177.1\|2202165_2204844_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP009559.1\|WP_001670767.1\|2207071_2209207_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP009559.1\|WP_000059465.1\|2206560_2206830_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP009559.1\|WP_000908562.1\|2217558_2218062_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP009559.1\|WP_011233186.1\|2219475_2220111_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP009559.1\|WP_001040208.1\|2205064_2205466_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP009559.1\|WP_000802069.1\|2209316_2210201_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP009559.1\|WP_000089675.1\|2205465_2206410_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP009559.1\|WP_000421309.1\|2215828_2216824_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP009559.1\|WP_000224390.1\|2212422_2213667_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP009559.1\|WP_000884721.1\|2217040_2217565_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP009559.1\|WP_077905015.1\|2214941_2215838_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP009559.1\|WP_000037599.1\|2218826_2219345_-\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|153228
NZ_CP009559.1\|WP_000207645.1\|2198187_2199531_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP009559.1\|WP_001031038.1\|2200638_2202141_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP009559.1\|WP_010723222.1\|2210306_2210387_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP009559.1\|WP_000928379.1\|2218048_2218366_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP009559.1\|WP_000105461.1\|2200158_2200611_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP009559.1\|WP_000380409.1\|2218403_2218847_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127

Protein	Function_ID	Function_description	E-value
NZ_CP009559.1\|WP_000643280.1\|2220177_2220753_-\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	8.64374e-120
NZ_CP009559.1\|WP_000131177.1\|2202165_2204844_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP009559.1\|WP_001670767.1\|2207071_2209207_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP009559.1\|WP_000059465.1\|2206560_2206830_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_CP009559.1\|WP_000908562.1\|2217558_2218062_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_CP009559.1\|WP_011233186.1\|2219475_2220111_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.72509e-69
NZ_CP009559.1\|WP_001040208.1\|2205064_2205466_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.271e-52
NZ_CP009559.1\|WP_000802069.1\|2209316_2210201_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP009559.1\|WP_000089675.1\|2205465_2206410_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP009559.1\|WP_000421309.1\|2215828_2216824_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_CP009559.1\|WP_000224390.1\|2212422_2213667_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP009559.1\|WP_000884721.1\|2217040_2217565_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.82299e-84
NZ_CP009559.1\|WP_077905015.1\|2214941_2215838_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP009559.1\|WP_000037599.1\|2218826_2219345_-\|protein/nucleic-acid-deglycase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	5.12939e-86
NZ_CP009559.1\|WP_000207645.1\|2198187_2199531_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP009559.1\|WP_001031038.1\|2200638_2202141_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP009559.1\|WP_010723222.1\|2210306_2210387_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_CP009559.1\|WP_000928379.1\|2218048_2218366_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_CP009559.1\|WP_000105461.1\|2200158_2200611_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NZ_CP009559.1\|WP_000380409.1\|2218403_2218847_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	3.78925e-99

>NZ_CP009559.1|WP_010723222.1|2210306_2210387_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_CP009559.1|WP_000802069.1|2209316_2210201_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_CP009559.1|WP_001670767.1|2207071_2209207_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_CP009559.1|WP_000059465.1|2206560_2206830_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP009559.1|WP_000089675.1|2205465_2206410_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQWLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_CP009559.1|WP_001040208.1|2205064_2205466_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIALILQREIKDPRVGMMTTVSGVEMSRDLAYAKVFVTFLNDQDEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_CP009559.1|WP_000131177.1|2202165_2204844_+|translation-initiation-factor-IF-2
MTDLTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMVTINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEFESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_CP009559.1|WP_001031038.1|2200638_2202141_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP009559.1|WP_000105461.1|2200158_2200611_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP009559.1|WP_000207645.1|2198187_2199531_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKAK
>NZ_CP009559.1|WP_000224390.1|2212422_2213667_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPTTLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPMIGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIALILVFGVGNAVIHILSSFNLLPVYQ
>NZ_CP009559.1|WP_077905015.1|2214941_2215838_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVALSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDMVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_CP009559.1|WP_000421309.1|2215828_2216824_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP009559.1|WP_000884721.1|2217040_2217565_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_CP009559.1|WP_000908562.1|2217558_2218062_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_CP009559.1|WP_000928379.1|2218048_2218366_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_CP009559.1|WP_000380409.1|2218403_2218847_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACASVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA
>NZ_CP009559.1|WP_000037599.1|2218826_2219345_-|protein/nucleic-acid-deglycase
MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKEAGKTVKGKKGEASVTIDKAIDDVRPDEFDALLLPGGHSPDYLRGDSRFVDFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP009559.1|WP_011233186.1|2219475_2220111_+|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIYADYTLVVDTALTGRRLGAQHMVVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAE
>NZ_CP009559.1|WP_000643280.1|2220177_2220753_-|divisome-associated-lipoprotein-YraP
MKAFSPLAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLELRVSSALSKDEQIKKETRINVTAYQGKVLLVGQSPNSELSARAKQIAMGVEGTTEVYNEIRQGQPIGLGTASNDTWITTKVRSQLLTSDQVKSSNVKVTTENGEVFLLGLVTEREGKAAADIASRVSGVKRVTTAFTYIK

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Crispr_ID: NZ_CP009559_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009559_2

2561698-2561909

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCGG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

3 spacers

cas3,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP009559_2

>merge|NZ_CP009559|2|2561698-2561909|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATTCTTCTCTTTCGTTGAAAAACAGGCCATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAGATTTCAAATCACCGGCGCAACTCGAACAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGCCAGCGGGGATAGCCGT

>NZ_CP009559|2|1|2561698-2561849|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGA	ATTCTTCTCTTTCGTTGAAAAACAGGCCATC
GTGTTCCCCGCGCCAGCGGGGATAAACCGG	AAGATTTCAAATCACCGGCGCAACTCGAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCGG

>NZ_CP009559|2|2|2561698-2561909|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCTTCTCTTTCGTTGAAAAACAGGCCATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGATTTCAAATCACCGGCGCAACTCGAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

>NZ_CP009559|2|1|2561698-2561909|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCTTCTCTTTCGTTGAAAAACAGGCCATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGATTTCAAATCACCGGCGCAACTCGAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009559.1\|WP_000210861.1\|2557575_2559213_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP009559.1\|WP_001044464.1\|2551787_2552561_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP009559.1\|WP_000192065.1\|2569430_2572130_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP009559.1\|WP_000666426.1\|2575732_2576458_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP009559.1\|WP_000036734.1\|2559295_2560594_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP009559.1\|WP_001290675.1\|2565487_2567200_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP009559.1\|WP_000108313.1\|2562890_2563253_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP009559.1\|WP_000080389.1\|2567275_2568010_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP009559.1\|WP_000210904.1\|2563688_2565488_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP009559.1\|WP_000832400.1\|2550776_2551247_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP009559.1\|WP_000210451.1\|2556547_2557348_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP009559.1\|WP_000842512.1\|2555352_2555940_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP009559.1\|WP_000935107.1\|2574039_2574642_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP009559.1\|WP_001670238.1\|2574664_2575723_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP009559.1\|WP_001079653.1\|2550243_2550780_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP009559.1\|WP_001199962.1\|2560729_2561401_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP009559.1\|WP_000178263.1\|2551261_2551768_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP009559.1\|WP_000981791.1\|2552573_2555273_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP009559.1\|WP_000281412.1\|2576457_2577162_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_CP009559.1\|WP_001145531.1\|2568097_2569051_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NZ_CP009559.1\|WP_000210861.1\|2557575_2559213_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP009559.1\|WP_001044464.1\|2551787_2552561_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP009559.1\|WP_000192065.1\|2569430_2572130_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.70349e-143
NZ_CP009559.1\|WP_000666426.1\|2575732_2576458_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.50859e-48
NZ_CP009559.1\|WP_000036734.1\|2559295_2560594_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP009559.1\|WP_001290675.1\|2565487_2567200_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP009559.1\|WP_000108313.1\|2562890_2563253_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP009559.1\|WP_000080389.1\|2567275_2568010_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.42567e-137
NZ_CP009559.1\|WP_000210904.1\|2563688_2565488_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP009559.1\|WP_000832400.1\|2550776_2551247_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.82246e-98
NZ_CP009559.1\|WP_000210451.1\|2556547_2557348_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP009559.1\|WP_000842512.1\|2555352_2555940_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP009559.1\|WP_000935107.1\|2574039_2574642_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
NZ_CP009559.1\|WP_001670238.1\|2574664_2575723_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP009559.1\|WP_001079653.1\|2550243_2550780_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.32282e-120
NZ_CP009559.1\|WP_001199962.1\|2560729_2561401_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	4.95322e-154
NZ_CP009559.1\|WP_000178263.1\|2551261_2551768_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	2.32072e-105
NZ_CP009559.1\|WP_000981791.1\|2552573_2555273_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP009559.1\|WP_000281412.1\|2576457_2577162_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	4.22526e-90
NZ_CP009559.1\|WP_001145531.1\|2568097_2569051_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NZ_CP009559.1|WP_001199962.1|2560729_2561401_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKIKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP009559.1|WP_000036734.1|2559295_2560594_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP009559.1|WP_000210861.1|2557575_2559213_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP009559.1|WP_000210451.1|2556547_2557348_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP009559.1|WP_000842512.1|2555352_2555940_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP009559.1|WP_000981791.1|2552573_2555273_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP009559.1|WP_001044464.1|2551787_2552561_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFNRQALIATVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAAGLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP009559.1|WP_000178263.1|2551261_2551768_-|fimbrial-protein
MTMLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDVSQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP009559.1|WP_000832400.1|2550776_2551247_-|fimbrial-protein
MKRVLILTLLITRFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTNVPGLGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP009559.1|WP_001079653.1|2550243_2550780_-|fimbrial-protein
MNRIFQTTGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVVVTFQGVEDSTLPGLLALESSSIANGFAIGIETADQHPLIINASQGTEFMLAEGNTIINLQAWLQKTSGENIMPREFNASAMVNFEYQ
>NZ_CP009559.1|WP_000108313.1|2562890_2563253_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP009559.1|WP_000210904.1|2563688_2565488_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKALKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIGLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLAGRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARCMAVDVEKALLEVIAEFGAMDIESADEYLSELRVERRYQRDVY
>NZ_CP009559.1|WP_001290675.1|2565487_2567200_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKRESNFLRGTIAEDLNDGLTGGFHGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWKAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNLVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYSGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPDILASLGELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP009559.1|WP_000080389.1|2567275_2568010_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPEAYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP009559.1|WP_001145531.1|2568097_2569051_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRIAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLTCINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP009559.1|WP_000192065.1|2569430_2572130_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDTGEASYYSKRFGLVG
>NZ_CP009559.1|WP_000935107.1|2574039_2574642_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NZ_CP009559.1|WP_001670238.1|2574664_2575723_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP009559.1|WP_000666426.1|2575732_2576458_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLRKGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP009559.1|WP_000281412.1|2576457_2577162_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR

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Crispr_ID: NZ_CP009559_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009559_3

2578460-2578915

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

7 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NZ_CP009559_3

>merge|NZ_CP009559|3|2578460-2578915|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCACGTCTACTGCGTCAGTTGTACCGGCTACGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTACACCAAATGGGGGCCAGCAAAGAAAATGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACAGCACGGTATTGCGTCACATCGTAATGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCACACGAACACTTTCTACGCGAGGGCGGCGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGTTTAGTTAAATCGTCGGCAAACGTAAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATTGCATCATCGCGCATAGTGTCAAATGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGAAAATATAATTGTTCGTGACAGAATGATTCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP009559|3|2|2578460-2578915|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGTCTACTGCGTCAGTTGTACCGGCTACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACACCAAATGGGGGCCAGCAAAGAAAATGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACAGCACGGTATTGCGTCACATCGTAATGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACGAACACTTTCTACGCGAGGGCGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTTTAGTTAAATCGTCGGCAAACGTAAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTGCATCATCGCGCATAGTGTCAAATGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAAAATATAATTGTTCGTGACAGAATGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP009559|3|3|2578460-2578915|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGTCTACTGCGTCAGTTGTACCGGCTACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACACCAAATGGGGGCCAGCAAAGAAAATGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACAGCACGGTATTGCGTCACATCGTAATGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACGAACACTTTCTACGCGAGGGCGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTTTAGTTAAATCGTCGGCAAACGTAAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTGCATCATCGCGCATAGTGTCAAATGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAAAATATAATTGTTCGTGACAGAATGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP009559|3|2|2578460-2578915|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGTCTACTGCGTCAGTTGTACCGGCTACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACACCAAATGGGGGCCAGCAAAGAAAATGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACAGCACGGTATTGCGTCACATCGTAATGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACGAACACTTTCTACGCGAGGGCGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTTTAGTTAAATCGTCGGCAAACGTAAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTGCATCATCGCGCATAGTGTCAAATGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAAAATATAATTGTTCGTGACAGAATGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009559.1\|WP_000062282.1\|2578081_2578375_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP009559.1\|WP_000741651.1\|2584070_2584781_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP009559.1\|WP_000192065.1\|2569430_2572130_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP009559.1\|WP_000118672.1\|2577161_2578052_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP009559.1\|WP_001221546.1\|2586286_2587048_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP009559.1\|WP_000281412.1\|2576457_2577162_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_CP009559.1\|WP_000134246.1\|2585256_2586306_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP009559.1\|WP_011233164.1\|2583226_2583550_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP009559.1\|WP_000080389.1\|2567275_2568010_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP009559.1\|WP_000666426.1\|2575732_2576458_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP009559.1\|WP_000372402.1\|2580226_2581135_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP009559.1\|WP_001173658.1\|2582570_2583176_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP009559.1\|WP_000935107.1\|2574039_2574642_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP009559.1\|WP_000253542.1\|2587041_2587668_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NZ_CP009559.1\|WP_001145531.1\|2568097_2569051_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP009559.1\|WP_001092272.1\|2581144_2582584_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP009559.1\|WP_000517480.1\|2583740_2584052_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP009559.1\|WP_001219244.1\|2584780_2585260_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP009559.1\|WP_001670238.1\|2574664_2575723_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP009559.1\|WP_001290675.1\|2565487_2567200_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
NZ_CP009559.1\|WP_000062282.1\|2578081_2578375_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
NZ_CP009559.1\|WP_000741651.1\|2584070_2584781_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.14969e-118
NZ_CP009559.1\|WP_000192065.1\|2569430_2572130_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.70349e-143
NZ_CP009559.1\|WP_000118672.1\|2577161_2578052_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.51774e-156
NZ_CP009559.1\|WP_001221546.1\|2586286_2587048_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.28081e-145
NZ_CP009559.1\|WP_000281412.1\|2576457_2577162_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	4.22526e-90
NZ_CP009559.1\|WP_000134246.1\|2585256_2586306_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP009559.1\|WP_011233164.1\|2583226_2583550_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	2.00925e-47
NZ_CP009559.1\|WP_000080389.1\|2567275_2568010_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.42567e-137
NZ_CP009559.1\|WP_000666426.1\|2575732_2576458_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.50859e-48
NZ_CP009559.1\|WP_000372402.1\|2580226_2581135_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP009559.1\|WP_001173658.1\|2582570_2583176_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.83357e-145
NZ_CP009559.1\|WP_000935107.1\|2574039_2574642_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
NZ_CP009559.1\|WP_000253542.1\|2587041_2587668_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.34083e-128
NZ_CP009559.1\|WP_001145531.1\|2568097_2569051_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP009559.1\|WP_001092272.1\|2581144_2582584_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP009559.1\|WP_000517480.1\|2583740_2584052_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP009559.1\|WP_001219244.1\|2584780_2585260_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP009559.1\|WP_001670238.1\|2574664_2575723_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP009559.1\|WP_001290675.1\|2565487_2567200_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>NZ_CP009559.1|WP_000062282.1|2578081_2578375_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_CP009559.1|WP_000118672.1|2577161_2578052_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKLLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVA
>NZ_CP009559.1|WP_000281412.1|2576457_2577162_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_CP009559.1|WP_000666426.1|2575732_2576458_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLRKGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP009559.1|WP_001670238.1|2574664_2575723_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP009559.1|WP_000935107.1|2574039_2574642_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NZ_CP009559.1|WP_000192065.1|2569430_2572130_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDTGEASYYSKRFGLVG
>NZ_CP009559.1|WP_001145531.1|2568097_2569051_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRIAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLTCINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP009559.1|WP_000080389.1|2567275_2568010_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPEAYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP009559.1|WP_001290675.1|2565487_2567200_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKRESNFLRGTIAEDLNDGLTGGFHGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWKAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNLVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYSGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPDILASLGELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP009559.1|WP_000372402.1|2580226_2581135_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLETESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP009559.1|WP_001092272.1|2581144_2582584_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKMLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP009559.1|WP_001173658.1|2582570_2583176_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVMLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP009559.1|WP_011233164.1|2583226_2583550_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLTLMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP009559.1|WP_000517480.1|2583740_2584052_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP009559.1|WP_000741651.1|2584070_2584781_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGAIITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP009559.1|WP_001219244.1|2584780_2585260_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP009559.1|WP_000134246.1|2585256_2586306_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP009559.1|WP_001221546.1|2586286_2587048_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALRKFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGLDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP009559.1|WP_000253542.1|2587041_2587668_+|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MVSGRVQALLEQLRAQGIRDELVLNALAAVPREKFIDEAFEHKAWENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009559_2	2.5\|2561849\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561849-2561880	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
NZ_CP009559_2	2.5\|2561849\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561849-2561880	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
NZ_CP009559_2	2.5\|2561849\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561849-2561880	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
NZ_CP009559_2	2.5\|2561849\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561849-2561880	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
NZ_CP009559_2	2.1\|2561728\|31\|NZ_CP009559\|PILER-CR	2561728-2561758	31	NZ_CP014208	Pantoea ananatis strain R100 plasmid, complete sequence	64395-64425	7	0.774
NZ_CP009559_2	2.3\|2561727\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561727-2561758	32	NZ_CP014208	Pantoea ananatis strain R100 plasmid, complete sequence	64395-64426	7	0.781
NZ_CP009559_2	2.5\|2561849\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561849-2561880	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
NZ_CP009559_2	2.5\|2561849\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561849-2561880	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
NZ_CP009559_2	2.1\|2561728\|31\|NZ_CP009559\|PILER-CR	2561728-2561758	31	NC_016817	Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence	2105-2135	8	0.742
NZ_CP009559_2	2.1\|2561728\|31\|NZ_CP009559\|PILER-CR	2561728-2561758	31	NZ_CP020944	Pantoea ananatis strain PNA 97-1R plasmid unamed1, complete sequence	2105-2135	8	0.742
NZ_CP009559_2	2.1\|2561728\|31\|NZ_CP009559\|PILER-CR	2561728-2561758	31	NC_017553	Pantoea ananatis PA13 plasmid PAGR_p, complete sequence	2205-2235	8	0.742
NZ_CP009559_2	2.1\|2561728\|31\|NZ_CP009559\|PILER-CR	2561728-2561758	31	NC_017533	Pantoea ananatis AJ13355 plasmid pEA320, complete sequence	108523-108553	8	0.742
NZ_CP009559_2	2.1\|2561728\|31\|NZ_CP009559\|PILER-CR	2561728-2561758	31	NZ_CP035036	Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence	264500-264530	8	0.742
NZ_CP009559_2	2.5\|2561849\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561849-2561880	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
NZ_CP009559_2	2.3\|2561727\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561727-2561758	32	NC_017533	Pantoea ananatis AJ13355 plasmid pEA320, complete sequence	108523-108554	9	0.719
NZ_CP009559_2	2.3\|2561727\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561727-2561758	32	NC_016817	Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence	2104-2135	9	0.719
NZ_CP009559_2	2.3\|2561727\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561727-2561758	32	NZ_CP020944	Pantoea ananatis strain PNA 97-1R plasmid unamed1, complete sequence	2104-2135	9	0.719
NZ_CP009559_2	2.3\|2561727\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561727-2561758	32	NC_017553	Pantoea ananatis PA13 plasmid PAGR_p, complete sequence	2204-2235	9	0.719
NZ_CP009559_2	2.3\|2561727\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561727-2561758	32	NZ_CP035036	Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence	264500-264531	9	0.719
NZ_CP009559_2	2.3\|2561727\|32\|NZ_CP009559\|CRISPRCasFinder,CRT	2561727-2561758	32	MH552514	Siphoviridae sp. isolate ctba45, complete genome	4692-4723	9	0.719
NZ_CP009559_3	3.6\|2578794\|32\|NZ_CP009559\|PILER-CR,CRISPRCasFinder,CRT	2578794-2578825	32	NZ_CP048637	Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence	43437-43468	9	0.719
NZ_CP009559_3	3.6\|2578794\|32\|NZ_CP009559\|PILER-CR,CRISPRCasFinder,CRT	2578794-2578825	32	NZ_CP048639	Rhizobium oryzihabitans strain M15 plasmid p7, complete sequence	54880-54911	9	0.719
NZ_CP009559_3	3.5\|2578733\|32\|NZ_CP009559\|PILER-CR,CRISPRCasFinder,CRT	2578733-2578764	32	NZ_CP019739	Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence	3689-3720	10	0.688
NZ_CP009559_3	3.5\|2578733\|32\|NZ_CP009559\|PILER-CR,CRISPRCasFinder,CRT	2578733-2578764	32	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	379454-379485	10	0.688

1. spacer 2.5|2561849|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

2. spacer 2.5|2561849|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

3. spacer 2.5|2561849|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

4. spacer 2.5|2561849|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

5. spacer 2.1|2561728|31|NZ_CP009559|PILER-CR matches to NZ_CP014208 (Pantoea ananatis strain R100 plasmid, complete sequence) position: , mismatch: 7, identity: 0.774

attcttctctttcgttgaaaaacaggccatc	CRISPR spacer
acccttttctttcgttgaaaaacgggatatg	Protospacer
*..***.****************.** .**

6. spacer 2.3|2561727|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NZ_CP014208 (Pantoea ananatis strain R100 plasmid, complete sequence) position: , mismatch: 7, identity: 0.781

aattcttctctttcgttgaaaaacaggccatc	CRISPR spacer
aacccttttctttcgttgaaaaacgggatatg	Protospacer
**..***.****************.** .**

7. spacer 2.5|2561849|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

8. spacer 2.5|2561849|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

9. spacer 2.1|2561728|31|NZ_CP009559|PILER-CR matches to NC_016817 (Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence) position: , mismatch: 8, identity: 0.742

attcttctctttcgttgaaaaacaggccatc	CRISPR spacer
ccccttttctttcgttgaaaaacgggatatg	Protospacer
 ..***.****************.** .**

10. spacer 2.1|2561728|31|NZ_CP009559|PILER-CR matches to NZ_CP020944 (Pantoea ananatis strain PNA 97-1R plasmid unamed1, complete sequence) position: , mismatch: 8, identity: 0.742

attcttctctttcgttgaaaaacaggccatc	CRISPR spacer
tcccttttctttcgttgaaaaacgggatatg	Protospacer
 ..***.****************.** .**

11. spacer 2.1|2561728|31|NZ_CP009559|PILER-CR matches to NC_017553 (Pantoea ananatis PA13 plasmid PAGR_p, complete sequence) position: , mismatch: 8, identity: 0.742

attcttctctttcgttgaaaaacaggccatc	CRISPR spacer
ccccttttctttcgttgaaaaacgggatatg	Protospacer
 ..***.****************.** .**

12. spacer 2.1|2561728|31|NZ_CP009559|PILER-CR matches to NC_017533 (Pantoea ananatis AJ13355 plasmid pEA320, complete sequence) position: , mismatch: 8, identity: 0.742

attcttctctttcgttgaaaaacaggccatc	CRISPR spacer
ccccttttctttcgttgaaaaacgggatatg	Protospacer
 ..***.****************.** .**

13. spacer 2.1|2561728|31|NZ_CP009559|PILER-CR matches to NZ_CP035036 (Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

attcttctctttcgttgaaaaacaggccatc	CRISPR spacer
ccccttttctttcgttgaaaaacgggatatg	Protospacer
 ..***.****************.** .**

14. spacer 2.5|2561849|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

15. spacer 2.3|2561727|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NC_017533 (Pantoea ananatis AJ13355 plasmid pEA320, complete sequence) position: , mismatch: 9, identity: 0.719

aattcttctctttcgttgaaaaacaggccatc	CRISPR spacer
tccccttttctttcgttgaaaaacgggatatg	Protospacer
  ..***.****************.** .**

16. spacer 2.3|2561727|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NC_016817 (Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence) position: , mismatch: 9, identity: 0.719

aattcttctctttcgttgaaaaacaggccatc	CRISPR spacer
tccccttttctttcgttgaaaaacgggatatg	Protospacer
  ..***.****************.** .**

17. spacer 2.3|2561727|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NZ_CP020944 (Pantoea ananatis strain PNA 97-1R plasmid unamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aattcttctctttcgttgaaaaacaggccatc	CRISPR spacer
ttcccttttctttcgttgaaaaacgggatatg	Protospacer
  ..***.****************.** .**

18. spacer 2.3|2561727|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NC_017553 (Pantoea ananatis PA13 plasmid PAGR_p, complete sequence) position: , mismatch: 9, identity: 0.719

aattcttctctttcgttgaaaaacaggccatc	CRISPR spacer
tccccttttctttcgttgaaaaacgggatatg	Protospacer
  ..***.****************.** .**

19. spacer 2.3|2561727|32|NZ_CP009559|CRISPRCasFinder,CRT matches to NZ_CP035036 (Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

aattcttctctttcgttgaaaaacaggccatc	CRISPR spacer
tccccttttctttcgttgaaaaacgggatatg	Protospacer
  ..***.****************.** .**

20. spacer 2.3|2561727|32|NZ_CP009559|CRISPRCasFinder,CRT matches to MH552514 (Siphoviridae sp. isolate ctba45, complete genome) position: , mismatch: 9, identity: 0.719

aattcttctctttcgttgaaaaacaggccatc	CRISPR spacer
aattcttctctttttttgaaaaagatattctg	Protospacer
*************. ******** * ... *

21. spacer 3.6|2578794|32|NZ_CP009559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048637 (Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence) position: , mismatch: 9, identity: 0.719

cgattgcatcatcgcgcatagtgtcaaatgtc	CRISPR spacer
cgattgcatcctcgcgcatcgtggatcagcgc	Protospacer
********** ******** ***    *   *

22. spacer 3.6|2578794|32|NZ_CP009559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048639 (Rhizobium oryzihabitans strain M15 plasmid p7, complete sequence) position: , mismatch: 9, identity: 0.719

cgattgcatcatcgcgcatagtgtcaaatgtc	CRISPR spacer
cgattgcatcctcgcgcatcgtggatcagcgc	Protospacer
********** ******** ***    *   *

23. spacer 3.5|2578733|32|NZ_CP009559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019739 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence) position: , mismatch: 10, identity: 0.688

ctgtttagttaaatcgtcggcaaacgtaaacg	CRISPR spacer
tagtttagttagatagtcggcaaacaatccct	Protospacer
. *********.** **********.    *

24. spacer 3.5|2578733|32|NZ_CP009559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 10, identity: 0.688

ctgtttagttaaatcgtcggcaaacgtaaacg	CRISPR spacer
gcaaatgcgtaaattatcggcaaacgtaaacg	Protospacer
 ..  *.  *****..****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

256 : 7912

Enterobacteria_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126347.1\|256_1570_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565907.1\|1596_2676_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.1
WP_000648782.1\|2680_3454_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018223.1\|3469_4444_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973711.1\|4449_5001_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
WP_000857533.1\|5001_5880_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.0e-108	65.2
WP_001023655.1\|5927_6827_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.7e-31	36.3
WP_000697846.1\|6826_7912_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9

DBSCAN-SWA_2

93160 : 102331

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195335.1\|93160_95194_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703141.1\|95434_95893_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	2.4e-52	71.9
WP_001265354.1\|96064_96595_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|96651_97119_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|97165_97885_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272855.1\|97881_99567_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.7e-279	88.9
WP_001240418.1\|99789_100521_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|100580_100688_+	protein YohO	NA	NA	NA	NA
WP_000824856.1\|100668_101400_-	ABC transporter permease	NA	NA	NA	NA
WP_000569167.1\|101383_102331_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_3

331388 : 337666

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000377775.1\|331388_332330_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	2.7e-146	87.5
WP_001682026.1\|333572_333962_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	6.9e-56	91.5
WP_000703599.1\|333930_334185_+	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
WP_187704795.1\|334170_334413_-	hypothetical protein	NA	NA	NA	NA
WP_000400612.1\|334448_336371_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	1.9e-300	77.5
WP_106417236.1\|337360_337504_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	9.0e-14	87.8
WP_106417237.1\|337519_337666_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.1e-14	73.9

DBSCAN-SWA_4

994201 : 1004875

Enterobacteria_phage(60.0%)

integrase

attL 980656:980672|attR 1006164:1006180

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
980656:980672	attL	NA	NA	NA	NA
WP_000783718.1\|994201_996535_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.1
WP_000743148.1\|996549_996870_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216601.1\|996866_997094_-	hypothetical protein	NA	NA	NA	NA
WP_000980371.1\|997090_997642_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	2.0e-24	60.9
WP_000556591.1\|997638_997905_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.7e-29	70.5
WP_000198637.1\|998442_999180_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.4e-80	64.9
WP_000984211.1\|999176_999422_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_000210078.1\|999438_1000005_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.7e-56	62.7
WP_000667328.1\|1000224_1000788_-	type II restriction endonuclease PvuII	A0A1B0UXL9	Roseobacter_phage	7.2e-30	42.9
WP_010376679.1\|1000784_1001021_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000970946.1\|1001076_1002072_+	site-specific DNA-methyltransferase	S0A236	Cellulophaga_phage	3.5e-19	24.2
WP_020839656.1\|1002125_1003385_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.7e-74	41.2
WP_000152556.1\|1003855_1004875_+	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	7.9e-43	30.4
1006164:1006180	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2742270 : 2869123

128

Salmonella_phage(51.85%)

terminase,lysis,portal,head,tRNA,integrase,holin,capsid,tail,plate

attL 2741123:2741171|attR 2806933:2806981

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2741123:2741171	attL	NA	NA	NA	NA
WP_012532529.1\|2742270_2743284_-\|integrase	tyrosine-type recombinase/integrase	F1BUN9	Cronobacter_phage	2.5e-174	85.1
WP_000687097.1\|2743283_2743856_-	phage repressor protein CI	F1BUN8	Cronobacter_phage	1.7e-58	53.8
WP_023211710.1\|2744238_2744742_+	phage regulatory CII family protein	F1BUN6	Cronobacter_phage	4.5e-60	72.5
WP_000643374.1\|2744751_2744979_+	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_000022786.1\|2745393_2745795_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
WP_000057334.1\|2745862_2746093_+	DUF2732 family protein	NA	NA	NA	NA
WP_011233149.1\|2746083_2746896_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	8.8e-122	84.3
WP_016504913.1\|2746936_2747080_+	hypothetical protein	NA	NA	NA	NA
WP_001137729.1\|2747206_2748958_+	replication endonuclease	F1BUM9	Cronobacter_phage	2.2e-255	75.0
WP_000960960.1\|2749070_2749289_+	hypothetical protein	E5G6M0	Salmonella_phage	2.8e-06	49.1
WP_001552031.1\|2749262_2749586_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_000038210.1\|2749582_2750644_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.7e-162	76.8
WP_001151947.1\|2750640_2752416_-	hypothetical protein	F1BUM5	Cronobacter_phage	7.0e-289	82.6
WP_000018798.1\|2752576_2753377_+\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	3.2e-76	54.8
WP_000550496.1\|2753438_2754461_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
WP_001218536.1\|2754464_2755166_+\|terminase	terminase	F1BUM0	Cronobacter_phage	3.2e-88	67.2
WP_001680743.1\|2755262_2755715_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.6e-64	82.7
WP_000084220.1\|2755711_2756218_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
WP_000560074.1\|2756214_2756922_+	hypothetical protein	F1BUL6	Cronobacter_phage	6.3e-100	75.2
WP_000220202.1\|2756918_2758046_+	DUF2586 family protein	F1BUL5	Cronobacter_phage	5.6e-175	83.5
WP_000166742.1\|2758042_2758498_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	2.1e-56	71.5
WP_001154425.1\|2758507_2758801_+\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_039755423.1\|2758797_2759139_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	3.8e-50	90.1
WP_000376372.1\|2759138_2759471_+	hypothetical protein	F1BUL2	Cronobacter_phage	2.6e-35	70.0
WP_000411339.1\|2759617_2759875_+\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_000811085.1\|2760062_2762033_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	5.6e-271	70.1
WP_001002797.1\|2762029_2762359_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000136924.1\|2762355_2763540_+\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	2.8e-177	77.6
WP_001001826.1\|2763532_2764120_+	hypothetical protein	F1BUK5	Cronobacter_phage	2.4e-89	82.1
WP_000084304.1\|2764129_2766157_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	1.2e-154	47.9
WP_000421117.1\|2766174_2766702_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.1e-51	52.6
WP_000267952.1\|2766691_2767417_+	hypothetical protein	F1BUK1	Cronobacter_phage	2.3e-68	56.8
WP_000200793.1\|2767388_2767934_+	hypothetical protein	F1BUJ9	Cronobacter_phage	1.9e-59	72.5
WP_000977532.1\|2767933_2769637_+	hypothetical protein	F1BUJ7	Cronobacter_phage	9.2e-222	80.9
WP_000136561.1\|2770316_2771435_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_001177838.1\|2773059_2773308_-	hypothetical protein	NA	NA	NA	NA
WP_000027757.1\|2773551_2774577_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
WP_000052560.1\|2774580_2775213_-	helix-turn-helix domain-containing protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
WP_000102106.1\|2775329_2775572_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
WP_000460852.1\|2775604_2776114_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
WP_000956167.1\|2776121_2776322_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
WP_000963479.1\|2776285_2776627_+	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
WP_001244240.1\|2776694_2776928_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
WP_000785510.1\|2776927_2777155_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
WP_001090717.1\|2777151_2777736_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
WP_000104130.1\|2777732_2778593_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
WP_000301196.1\|2778583_2780986_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.5
WP_001154438.1\|2781153_2781342_+	hypothetical protein	A0A1S6L006	Salmonella_phage	7.9e-26	96.8
WP_001217561.1\|2781353_2781587_+	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_000835188.1\|2781682_2781901_+	hypothetical protein	NA	NA	NA	NA
WP_039755430.1\|2781910_2782975_+	hypothetical protein	NA	NA	NA	NA
WP_000789324.1\|2782971_2784036_+	hypothetical protein	NA	NA	NA	NA
WP_000080839.1\|2784055_2784751_+	hypothetical protein	NA	NA	NA	NA
WP_011233140.1\|2784799_2785843_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.2e-174	86.0
WP_001098454.1\|2785842_2787609_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.3
WP_000216272.1\|2787751_2788585_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
WP_000730751.1\|2788601_2789666_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
WP_000059175.1\|2789669_2790320_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.4e-114	99.5
WP_000673540.1\|2790413_2790878_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
WP_000868184.1\|2790877_2791081_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171565.1\|2791084_2791300_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_001069889.1\|2791280_2791790_+	lysozyme	A0A1S6KZY9	Salmonella_phage	1.2e-92	97.6
WP_000731034.1\|2791794_2792172_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
WP_024131238.1\|2792168_2792597_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	3.3e-67	97.9
WP_001039961.1\|2792692_2793124_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
WP_000343944.1\|2793116_2793563_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
WP_000993747.1\|2793631_2794210_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.1e-107	99.0
WP_000177408.1\|2794206_2794566_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
WP_000268328.1\|2794552_2795461_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	3.5e-159	99.7
WP_001086800.1\|2795453_2796059_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-117	99.0
WP_001274654.1\|2796055_2797675_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	3.2e-155	91.2
WP_000006337.1\|2797681_2798089_+\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
WP_000161709.1\|2798286_2799009_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000388790.1\|2799222_2799441_+	Hin recombinase	A0A1S6L009	Salmonella_phage	1.4e-29	90.3
WP_000046101.1\|2799543_2800716_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
WP_001207653.1\|2800725_2801241_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_001280965.1\|2801295_2801598_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
WP_000763315.1\|2801612_2801732_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_001282813.1\|2801724_2804505_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	3.5e-125	41.1
WP_000980405.1\|2804504_2804990_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
WP_001011749.1\|2804986_2806087_+	phage late control D family protein	E5G6Q3	Salmonella_phage	3.0e-189	91.8
WP_001775272.1\|2806154_2806373_+	ogr/Delta-like zinc finger family protein	E5G6Q4	Salmonella_phage	4.9e-27	75.0
WP_001039750.1\|2806459_2806837_-	hypothetical protein	NA	NA	NA	NA
WP_000342601.1\|2807366_2808530_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
2806933:2806981	attR	NA	NA	NA	NA
WP_000196157.1\|2808537_2810718_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_000533854.1\|2810714_2812124_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_001237661.1\|2812188_2823663_-	biofilm-associated protein BapA	NA	NA	NA	NA
WP_001518569.1\|2824281_2824764_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242604.1\|2824912_2825389_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001112990.1\|2825378_2825669_+	RnfH family protein	NA	NA	NA	NA
WP_001203433.1\|2825834_2826173_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880965.1\|2826321_2827983_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059155.1\|2828068_2828947_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|2829069_2829660_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_000271804.1\|2829700_2830306_-	hypothetical protein	NA	NA	NA	NA
WP_127908301.1\|2830435_2831722_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|2831741_2832533_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460060.1\|2832698_2834060_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|2834311_2834560_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|2834578_2835127_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469802.1\|2835171_2835939_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065257.1\|2835979_2836327_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_001030993.1\|2836483_2837704_-	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
WP_001212373.1\|2837696_2838215_-	YfiR family protein	NA	NA	NA	NA
WP_001168062.1\|2838654_2839725_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_000225183.1\|2839734_2840856_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000210975.1\|2840913_2841822_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000200087.1\|2841782_2842943_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_010989056.1\|2843042_2843090_-	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_000178449.1\|2843193_2843532_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197660.1\|2843803_2844541_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079130.1\|2844672_2845653_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000992634.1\|2845649_2846381_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235092.1\|2846510_2849084_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
WP_000154860.1\|2855087_2855891_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	5.1e-37	34.6
WP_000648518.1\|2855912_2856827_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001127560.1\|2856931_2858107_+	MFS transporter	NA	NA	NA	NA
WP_001230970.1\|2858238_2859039_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000207237.1\|2859116_2859887_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_039755476.1\|2859942_2861310_-	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	9.0e-10	32.5
WP_001052769.1\|2861381_2862137_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000801242.1\|2862171_2862894_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917872.1\|2862890_2863358_-	ribonuclease HI	J9Q745	Salmonella_phage	4.7e-51	58.9
WP_001670675.1\|2863421_2864153_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.4e-39	39.9
WP_000367632.1\|2864683_2865727_-	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_000145239.1\|2865737_2866733_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000371505.1\|2866729_2868613_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000108009.1\|2868628_2869123_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_6

2945903 : 2990612

Salmonella_phage(51.52%)

protease,terminase,portal,holin,integrase,lysis,coat

attL 2948515:2948528|attR 2959810:2959823

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001043666.1\|2945903_2946956_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.3e-112	58.5
WP_001285277.1\|2947238_2948342_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.0e-61	39.8
WP_000893229.1\|2948353_2949604_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.0e-97	47.5
2948515:2948528	attL	NA	NA	NA	NA
WP_000051901.1\|2949809_2950973_-\|integrase	site-specific integrase	A0A220NQU7	Salmonella_phage	4.1e-229	99.7
WP_157804913.1\|2951202_2951343_-	hypothetical protein	A0A0M4QWX3	Salmonella_phage	7.2e-16	95.7
WP_000002128.1\|2951411_2951696_-	ASCH domain-containing protein	A0A1R3Y5R3	Salmonella_virus	4.1e-50	100.0
WP_000208071.1\|2951688_2952774_-	DUF550 domain-containing protein	A0A1R3Y5Q8	Salmonella_virus	2.0e-153	76.7
WP_000582227.1\|2952784_2953540_-	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	5.5e-150	99.2
WP_001017879.1\|2953539_2954040_-	ead/Ea22-like family protein	A0A1R3Y5T1	Salmonella_virus	1.0e-64	62.6
WP_000665851.1\|2954036_2954696_-	hypothetical protein	A0A1R3Y5S0	Salmonella_virus	2.2e-62	61.6
WP_001214769.1\|2954692_2954863_-	DUF2737 family protein	I6S642	Salmonella_phage	5.7e-23	94.6
WP_001111312.1\|2954873_2955167_-	DUF2856 family protein	A0A1R3Y5T7	Salmonella_virus	3.2e-50	100.0
WP_001046981.1\|2955497_2956205_-	recombinase	A0A1R3Y600	Salmonella_virus	4.1e-139	100.0
WP_000902088.1\|2956201_2956345_-	hypothetical protein	A0A1R3Y5R4	Salmonella_virus	2.7e-18	97.9
WP_000156730.1\|2956334_2956523_-	DUF5444 family protein	A0A1R3Y5S5	Salmonella_virus	1.6e-31	100.0
WP_001200114.1\|2956503_2956656_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	B8K1E2	Salmonella_phage	9.2e-25	98.0
WP_000542409.1\|2956970_2957264_-	hypothetical protein	B8K1E3	Salmonella_phage	4.1e-45	95.7
WP_000213983.1\|2957300_2957495_-	hypothetical protein	A0A075B8G0	Enterobacteria_phage	2.5e-30	100.0
WP_001066166.1\|2957708_2958296_+	superinfection exclusion B family protein	A0A0M4R594	Salmonella_phage	1.4e-84	98.5
WP_000216028.1\|2958308_2958611_-	hypothetical protein	B8K1E6	Salmonella_phage	8.2e-49	97.0
WP_000786965.1\|2958974_2959184_+	fumarate hydratase FumD	I6R0R9	Salmonella_phage	1.9e-28	92.8
WP_000680395.1\|2959222_2959468_-	hypothetical protein	NA	NA	NA	NA
WP_000712403.1\|2959825_2960515_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
2959810:2959823	attR	NA	NA	NA	NA
WP_000182204.1\|2960625_2960841_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.3e-32	100.0
WP_001103491.1\|2960951_2961233_+	hypothetical protein	Q76H54	Enterobacteria_phage	1.6e-43	98.9
WP_001125982.1\|2961267_2961414_+	DUF2740 family protein	A0A0M4S617	Salmonella_phage	1.9e-19	100.0
WP_000065656.1\|2961406_2962306_+	hypothetical protein	E7C9R4	Salmonella_phage	2.5e-154	98.7
WP_000131495.1\|2962295_2963732_+	AAA family ATPase	A0A220NQX0	Salmonella_phage	3.0e-274	99.2
WP_000248682.1\|2963807_2964014_+	hypothetical protein	I6RSI5	Salmonella_phage	1.1e-31	100.0
WP_000975822.1\|2964025_2964181_+	hypothetical protein	A0A2H4FWM4	Salmonella_phage	2.4e-20	100.0
WP_000344579.1\|2964192_2964513_+	hypothetical protein	I6R992	Salmonella_phage	1.1e-22	59.4
WP_000049340.1\|2964515_2964812_+	hypothetical protein	E7C9R7	Salmonella_phage	6.8e-48	99.0
WP_000811302.1\|2964768_2965215_+	recombination protein NinB	I6R0N7	Salmonella_phage	7.8e-80	98.6
WP_000679702.1\|2965211_2965385_+	hypothetical protein	C6ZR56	Salmonella_phage	5.2e-32	100.0
WP_000113770.1\|2965351_2965528_+	NinE family protein	Q76H73	Enterobacteria_phage	1.0e-27	100.0
WP_011233124.1\|2965530_2965872_+	DUF2591 family protein	Q76H72	Enterobacteria_phage	5.1e-63	99.1
WP_000950962.1\|2965864_2966041_+	protein ninF	A0A220NRM2	Escherichia_phage	1.9e-26	100.0
WP_001286918.1\|2966033_2966246_+	hypothetical protein	K7PK10	Enterobacteria_phage	4.7e-35	98.6
WP_000002244.1\|2966238_2966529_+	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	1.0e-51	100.0
WP_001046347.1\|2966525_2966888_+	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	7.8e-62	98.3
WP_000994515.1\|2966884_2967073_+	protein ninH	K7PH29	Enterobacteria_phage	1.9e-27	100.0
WP_001235452.1\|2967069_2967693_+	antitermination protein	K7PM87	Enterobacteria_phage	8.3e-96	87.0
WP_000738703.1\|2968127_2968454_+\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
WP_001167374.1\|2968437_2968875_+	lysozyme	Q5G8R3	Enterobacteria_phage	6.3e-74	97.9
WP_011233123.1\|2968892_2969342_+\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	3.0e-63	87.8
WP_001028469.1\|2969554_2970076_+	KilA-N domain-containing protein	H6WRZ8	Salmonella_phage	1.9e-101	100.0
WP_000808100.1\|2970399_2970642_+	DUF2560 family protein	A0A192Y6S9	Salmonella_phage	1.0e-33	100.0
WP_012532521.1\|2970644_2971049_+	hypothetical protein	A0A192Y6U9	Salmonella_phage	1.5e-66	99.3
WP_000729925.1\|2971052_2971541_+	DNA-packaging protein	O80290	Bacteriophage	2.9e-88	100.0
WP_000417866.1\|2971518_2973018_+\|terminase	terminase large subunit	A0A2H4FUR5	Salmonella_phage	4.8e-307	100.0
WP_000774658.1\|2973017_2975195_+\|portal	portal protein p19	I6R968	Salmonella_phage	0.0e+00	98.6
WP_000433852.1\|2975208_2976120_+	scaffold protein	A0A192Y6T4	Salmonella_phage	4.9e-161	100.0
WP_001196936.1\|2976119_2977412_+\|coat	coat protein	A0A075B8L2	Enterobacteria_phage	2.5e-243	99.8
WP_000538674.1\|2977452_2978013_+	hypothetical protein	E7C9T9	Salmonella_phage	1.3e-103	100.0
WP_001166094.1\|2977996_2978497_+	packaged DNA stabilization gp4 family protein	E7C9U0	Salmonella_phage	1.2e-89	98.8
WP_001122416.1\|2978456_2979875_+	packaged DNA stabilization protein gp10	A0A220NQZ5	Salmonella_phage	2.4e-276	99.8
WP_000774919.1\|2979878_2980517_+	hypothetical protein	A8CGD2	Salmonella_phage	6.3e-91	100.0
WP_000627703.1\|2980516_2980972_+	DUF2824 family protein	E7C9U3	Salmonella_phage	1.8e-87	100.0
WP_000964851.1\|2980974_2981664_+	hypothetical protein	I1TEJ4	Salmonella_phage	2.9e-81	100.0
WP_000190212.1\|2981673_2983044_+	phage DNA ejection protein	A0A1R3Y5Q4	Salmonella_virus	1.6e-248	99.3
WP_000868979.1\|2983043_2984975_+	hypothetical protein	I1TEJ6	Salmonella_phage	0.0e+00	99.1
WP_071533035.1\|2985113_2985407_+	hypothetical protein	Q76H12	Enterobacteria_phage	3.2e-50	100.0
WP_000532177.1\|2985427_2985676_-	Arc family DNA-binding protein	Q76H48	Enterobacteria_phage	1.8e-38	100.0
WP_000129927.1\|2985811_2987815_+	endorhamnosidase	Q76H47	Enterobacteria_phage	0.0e+00	99.9
WP_000671498.1\|2987873_2989331_-	glucosyltransferase domain-containing protein	E7C9N7	Salmonella_phage	1.4e-239	99.2
WP_000703606.1\|2989320_2990253_-	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	1.2e-175	99.7
WP_000915523.1\|2990249_2990612_-	GtrA family protein	I1TED9	Salmonella_phage	3.9e-61	100.0

DBSCAN-SWA_7

3546975 : 3556505

Dickeya_phage(16.67%)

protease,integrase

attL 3548226:3548240|attR 3561702:3561716

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201759.1\|3546975_3548094_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8
WP_000125879.1\|3548090_3550037_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
3548226:3548240	attL	NA	NA	NA	NA
WP_000447499.1\|3550166_3550388_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|3550711_3551032_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934064.1\|3551062_3553339_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000274276.1\|3553837_3554368_-	hypothetical protein	NA	NA	NA	NA
WP_001117984.1\|3555768_3555966_-	hypothetical protein	NA	NA	NA	NA
WP_011233091.1\|3556127_3556505_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	2.6e-20	41.0
3561702:3561716	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3806668 : 3814861

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000444503.1\|3806668_3807919_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_000915986.1\|3808377_3809502_+	type III secretion system effector SopF	NA	NA	NA	NA
WP_011233074.1\|3810448_3810862_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6
WP_011233073.1\|3810878_3811607_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.1e-62	52.9
WP_000158843.1\|3811798_3812341_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001277616.1\|3812488_3812866_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_011233072.1\|3812938_3813748_-	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	4.2e-63	50.4
WP_000497451.1\|3814621_3814861_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

DBSCAN-SWA_9

4518021 : 4525248

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157323.1\|4518021_4519452_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377044.1\|4519525_4520221_-	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.5
WP_001080667.1\|4521261_4522440_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	2.3e-107	56.7
WP_024131163.1\|4522700_4522889_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|4522899_4523112_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457650.1\|4523557_4524826_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.3e-225	91.7
WP_000394197.1\|4524828_4525248_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009559

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection