CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP010315	Escherichia coli strain 789 chromosome, complete genome	6 crisprs	DinG,cas3,c2c9_V-U4,DEDDh,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	13	8
NZ_CP010316	Escherichia coli strain 789 plasmid pAPEC-O78-ColV	0 crisprs	DEDDh	0	1
NZ_CP010317	Escherichia coli strain 789 plasmid pAPEC-O78-2	0 crisprs	cas14j,csa3	0	1
NZ_CP010318	Escherichia coli strain 789 plasmid pAPEC-O78-3	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010315_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010315_1

67173-67288

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010315_1

>merge|NZ_CP010315|1|67173-67288|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>NZ_CP010315|1|1|67173-67288|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010315.1\|WP_000525176.1\|60244_60904_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP010315.1\|WP_000235700.1\|73383_74994_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP010315.1\|WP_000241271.1\|54375_55365_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP010315.1\|WP_001295536.1\|74969_75953_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP010315.1\|WP_000637846.1\|78093_79272_+\|sugar-efflux-transporter-SetA	unknown	unknown	gnl\|CDD\|129977
NZ_CP010315.1\|WP_000746150.1\|56703_59058_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP010315.1\|WP_000151734.1\|67307_68810_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP010315.1\|WP_000610901.1\|53177_53555_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP010315.1\|WP_000035637.1\|63986_66338_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP010315.1\|WP_000800453.1\|55364_56651_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP010315.1\|WP_001117011.1\|60915_63822_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP010315.1\|WP_000888642.1\|66412_67108_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP010315.1\|WP_001065381.1\|53557_54379_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP010315.1\|WP_001200579.1\|59312_60128_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP010315.1\|WP_001148402.1\|71823_72588_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP010315.1\|WP_001300811.1\|70859_71738_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP010315.1\|WP_000951786.1\|68820_70521_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP010315.1\|WP_001248770.1\|77860_77992_+\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
NZ_CP010315.1\|WP_001297366.1\|76116_77772_-\|DNA-binding-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP010315.1\|WP_000916291.1\|72701_73400_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716

Protein	Function_ID	Function_description	E-value
NZ_CP010315.1\|WP_000525176.1\|60244_60904_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159
NZ_CP010315.1\|WP_000235700.1\|73383_74994_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP010315.1\|WP_000241271.1\|54375_55365_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP010315.1\|WP_001295536.1\|74969_75953_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP010315.1\|WP_000637846.1\|78093_79272_+\|sugar-efflux-transporter-SetA	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP010315.1\|WP_000746150.1\|56703_59058_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP010315.1\|WP_000151734.1\|67307_68810_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP010315.1\|WP_000610901.1\|53177_53555_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP010315.1\|WP_000035637.1\|63986_66338_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP010315.1\|WP_000800453.1\|55364_56651_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP010315.1\|WP_001117011.1\|60915_63822_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP010315.1\|WP_000888642.1\|66412_67108_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.31794e-177
NZ_CP010315.1\|WP_001065381.1\|53557_54379_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.76119e-148
NZ_CP010315.1\|WP_001200579.1\|59312_60128_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.49529e-169
NZ_CP010315.1\|WP_001148402.1\|71823_72588_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.3759e-49
NZ_CP010315.1\|WP_001300811.1\|70859_71738_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP010315.1\|WP_000951786.1\|68820_70521_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP010315.1\|WP_001248770.1\|77860_77992_+\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
NZ_CP010315.1\|WP_001297366.1\|76116_77772_-\|DNA-binding-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP010315.1\|WP_000916291.1\|72701_73400_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.49788e-164

>NZ_CP010315.1|WP_000888642.1|66412_67108_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRLVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIATGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP010315.1|WP_000035637.1|63986_66338_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDIRNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYIRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP010315.1|WP_001117011.1|60915_63822_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP010315.1|WP_000525176.1|60244_60904_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP010315.1|WP_001200579.1|59312_60128_+|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP010315.1|WP_000746150.1|56703_59058_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNSL
>NZ_CP010315.1|WP_000800453.1|55364_56651_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP010315.1|WP_000241271.1|54375_55365_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRTYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPLLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP010315.1|WP_001065381.1|53557_54379_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>NZ_CP010315.1|WP_000610901.1|53177_53555_-|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP010315.1|WP_000151734.1|67307_68810_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP010315.1|WP_000951786.1|68820_70521_-|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDTTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>NZ_CP010315.1|WP_001300811.1|70859_71738_+|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP010315.1|WP_001148402.1|71823_72588_+|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGG
>NZ_CP010315.1|WP_000916291.1|72701_73400_-|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTNELLSGKASASALLGITG
>NZ_CP010315.1|WP_000235700.1|73383_74994_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP010315.1|WP_001295536.1|74969_75953_-|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP010315.1|WP_001297366.1|76116_77772_-|DNA-binding-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>NZ_CP010315.1|WP_001248770.1|77860_77992_+|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>NZ_CP010315.1|WP_000637846.1|78093_79272_+|sugar-efflux-transporter-SetA
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV

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Crispr_ID: NZ_CP010315_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010315_2

277021-277174

Orphan

Consensus_repeat	Method
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010315_2

>merge|NZ_CP010315|2|277021-277174|CRISPRCasFinder
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCGGTTATGCGCAGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAACCTGTGCTGGATCGGTAGGCCGGATAAGGCG

>NZ_CP010315|2|2|277021-277174|CRISPRCasFinder
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	TTTACGCCGCATCCGGCGGTTATGCGCAGATGCCTGATGCGACGCTGA
CGCGTCTTATCATGCCTACAAACCTGTGCTGGATCGGTAGGCCGGATAAGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010315.1\|WP_000009291.1\|275559_276318_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP010315.1\|WP_000532698.1\|269805_270279_+\|C-lysozyme-inhibitor	unknown	unknown	gnl\|CDD\|182187
NZ_CP010315.1\|WP_000006256.1\|276493_276991_+\|REP-associated-tyrosine-transposase-RayT	unknown	unknown	gnl\|CDD\|224854
NZ_CP010315.1\|WP_001293003.1\|282282_283740_-\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP010315.1\|WP_001226155.1\|279848_280904_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP010315.1\|WP_001059874.1\|280900_281353_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP010315.1\|WP_001291992.1\|284000_284459_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP010315.1\|WP_000207589.1\|278992_279778_+\|putative-lateral-flagellar-export/assembly-protein-LafU	unknown	unknown	gnl\|CDD\|235860
NZ_CP010315.1\|WP_001323598.1\|277308_279048_-\|flagellar-type-III-secretion-system-protein-FlhA	unknown	unknown	gnl\|CDD\|224217
NZ_CP010315.1\|WP_001118055.1\|268881_269652_-\|2-oxoglutaramate-amidase	unknown	unknown	gnl\|CDD\|182461
NZ_CP010315.1\|WP_000509090.1\|262728_266982_+\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|225750
NZ_CP010315.1\|WP_000749881.1\|286292_287348_-\|phosphoporin-PhoE	unknown	unknown	gnl\|CDD\|182275
NZ_CP010315.1\|WP_001295202.1\|281659_281926_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181972
NZ_CP010315.1\|WP_001225679.1\|274527_275268_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP010315.1\|WP_000978828.1\|266993_267443_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010315.1\|WP_000189539.1\|284550_285795_+\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP010315.1\|WP_000284050.1\|273005_273584_+\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP010315.1\|WP_000333380.1\|273789_274557_+\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP010315.1\|WP_000174677.1\|285852_286254_+\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP010315.1\|WP_000973093.1\|270321_272766_-\|acyl-CoA-dehydrogenase-FadE	unknown	unknown	gnl\|CDD\|236528

Protein	Function_ID	Function_description	E-value
NZ_CP010315.1\|WP_000009291.1\|275559_276318_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	3.3314e-41
NZ_CP010315.1\|WP_000532698.1\|269805_270279_+\|C-lysozyme-inhibitor	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	9.39999e-93
NZ_CP010315.1\|WP_000006256.1\|276493_276991_+\|REP-associated-tyrosine-transposase-RayT	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.32036e-43
NZ_CP010315.1\|WP_001293003.1\|282282_283740_-\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP010315.1\|WP_001226155.1\|279848_280904_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP010315.1\|WP_001059874.1\|280900_281353_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	4.77997e-103
NZ_CP010315.1\|WP_001291992.1\|284000_284459_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	5.05624e-113
NZ_CP010315.1\|WP_000207589.1\|278992_279778_+\|putative-lateral-flagellar-export/assembly-protein-LafU	gnl\|CDD\|235860	PRK06778, PRK06778, hypothetical protein; Validated.	5.17999e-173
NZ_CP010315.1\|WP_001323598.1\|277308_279048_-\|flagellar-type-III-secretion-system-protein-FlhA	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP010315.1\|WP_001118055.1\|268881_269652_-\|2-oxoglutaramate-amidase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
NZ_CP010315.1\|WP_000509090.1\|262728_266982_+\|RHS-repeat-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	9.21736e-135
NZ_CP010315.1\|WP_000749881.1\|286292_287348_-\|phosphoporin-PhoE	gnl\|CDD\|182275	PRK10159, PRK10159, phosphoporin PhoE.	0
NZ_CP010315.1\|WP_001295202.1\|281659_281926_+\|hypothetical-protein	gnl\|CDD\|181972	PRK09588, PRK09588, hypothetical protein; Reviewed.	1.93527e-42
NZ_CP010315.1\|WP_001225679.1\|274527_275268_-\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.07529e-116
NZ_CP010315.1\|WP_000189539.1\|284550_285795_+\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP010315.1\|WP_000284050.1\|273005_273584_+\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	1.61173e-142
NZ_CP010315.1\|WP_000333380.1\|273789_274557_+\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	8.29603e-146
NZ_CP010315.1\|WP_000174677.1\|285852_286254_+\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.11584e-87
NZ_CP010315.1\|WP_000973093.1\|270321_272766_-\|acyl-CoA-dehydrogenase-FadE	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0

>NZ_CP010315.1|WP_000006256.1|276493_276991_+|REP-associated-tyrosine-transposase-RayT
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAGERIIL
>NZ_CP010315.1|WP_000009291.1|275559_276318_+|C40-family-peptidase
MSFMSSFLLGRFLHPGVFSLCVLLPLFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILEAKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGENIRVSRLAEPFWQDHFLGARRILTEETIL
>NZ_CP010315.1|WP_001225679.1|274527_275268_-|murein-L,D-transpeptidase
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>NZ_CP010315.1|WP_000333380.1|273789_274557_+|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>NZ_CP010315.1|WP_000284050.1|273005_273584_+|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>NZ_CP010315.1|WP_000973093.1|270321_272766_-|acyl-CoA-dehydrogenase-FadE
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLCSINVDDFDPEELATKPVKLPEKVRKVEAA
>NZ_CP010315.1|WP_000532698.1|269805_270279_+|C-lysozyme-inhibitor
MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>NZ_CP010315.1|WP_001118055.1|268881_269652_-|2-oxoglutaramate-amidase
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQNDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAIYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMVALREYREKFPAWQDADEFRLR
>NZ_CP010315.1|WP_000978828.1|266993_267443_+|hypothetical-protein
MMKYLMVLLSLFSGSVLGMGRVNELCGIDSVKTIEIINLPSYVTTLVPLSKEGLNEIYRYKVVVNEISDLYAGKIIDLLQMKYFRKEKYNNIRWGVSIISKGNNKCEIYFDAFGECGSVNGINVCFEKNEMIGWIKKEIPLLSQKIGGL
>NZ_CP010315.1|WP_000509090.1|262728_266982_+|RHS-repeat-protein
MGGKPAARQGDMTRKGLDIVQGSAGVLIGAPTGVACSVCPGGITYANPVNPLLGAKVLPGETDLALPGPLPFILSRAYSSYRTRTPAPVGVFGPGWKAPFDIRLQIRDEGLILNDSGGRSIHFEPLFPGEISYSRSESLWLARGGVAAQHSSQPLSALWQVLPEDVRLSPHVYLATNSLQGPWWILSWPERVPGADEVLPPEPPAYRVLTGVVDGFGRTLAFHRAAEGDVAGAVTGVTDGAGRRFHLVLTTQAQRAEVFRKQRATSLSSPAGPRSASSSLVFPDTLPAGTGYGTDNGIRLEAVWLTHDPAYPDEQPTAPLARYTYTAGGELRAVYDRSGTQVRGFTYDAEHAGRMVAHHYAGRPESCYRYDDTGRVTEQVNPEGLDYRFEYGESRVIITDSLNRREVLYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVTGPDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLTAETSRSGETTRYSYDDPASELPTGIQDATGSTKQMAWSRYGQLLAFTDCSGYTTRYEYDRYGQQIAVHREEGISTYSSYNPRGQLVSQKDAQGREIRYEYSAAGDLTATISPDGKRSTIEYDKRGRPVSVTEGGLTRSMGYDAAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYHYDLTGKLTQSEDEGLITLWHYDASDRITHRTVNGDPAEQWQYDEHGWLTTLSHTCEGHRVSVHYGYDDKGRLTGERQTVENPETGEMLWEHETGHAYSEQGLATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETARSFGGAGSTAGYEQATAYTLTGQLQSRHLNLPQLDCDYTWNDNGQLVRISGPQECREYRYSGTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDSQHRLVFYTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPGSFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAEYIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGEESAQHLQQSLRLPGQQYDEESGLYYNRNRYYDPLQGRYITQDPIGLRGEWNLYKYPLNPVRFIDSLGLKFHVNGDPSDFNQAVEYLKQDSQMKETIDFLSSSEETINIEYIEGTNVRFNSNNMAIYWNSRASLFCSTELNSKSQSPALGLGHEFAHAQYYLLDKENFMALLSRTDKKYENKEEARVITIIESRAAKTLGECTRGAHSGLPFYRVDGPLQTMKITGTPE
>NZ_CP010315.1|WP_001323598.1|277308_279048_-|flagellar-type-III-secretion-system-protein-FlhA
MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRISDNGDITHDVRHQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>NZ_CP010315.1|WP_000207589.1|278992_279778_+|putative-lateral-flagellar-export/assembly-protein-LafU
MTTIKLIVNSVSKSERESIIAALHGQSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRMR
>NZ_CP010315.1|WP_001226155.1|279848_280904_+|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVILLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
>NZ_CP010315.1|WP_001059874.1|280900_281353_+|GNAT-family-N-acetyltransferase
MNNIQIRNYQPGDFQQLCAIFIRAVMMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFISRIERHIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQIVKQQHVECRGAWFTNFYMRYKPQH
>NZ_CP010315.1|WP_001295202.1|281659_281926_+|hypothetical-protein
MEWYMGKYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPARRRGNGAGNRNGPLL
>NZ_CP010315.1|WP_001293003.1|282282_283740_-|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVNTYQDILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIKSVGHYWTLLTELLKEIPAK
>NZ_CP010315.1|WP_001291992.1|284000_284459_+|xanthine-phosphoribosyltransferase
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDNYVVDIPQDTWIEQPWDMGVVFVPPISGR
>NZ_CP010315.1|WP_000189539.1|284550_285795_+|esterase-FrsA
MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDDALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITGWIEKRLC
>NZ_CP010315.1|WP_000174677.1|285852_286254_+|sigma-factor-binding-protein-Crl
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDEPVKLTA
>NZ_CP010315.1|WP_000749881.1|286292_287348_-|phosphoporin-PhoE
MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF

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Crispr_ID: NZ_CP010315_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010315_3

3148036-3148674

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP010315_3

>merge|NZ_CP010315|3|3148036-3148674|CRT,PILER-CR,CRISPRCasFinder
GGGTGTTCTACCGCAGGGGCGGGGAATTCTAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTTACTGCTTGGTATGCGGAATCACACCCTGAACGGTTTATCCCCGCTGGCGCGGGGAACACTGAAGCATCAAACATTTGGTGGACCAAACGGACGGTTTATCCCCGCTGGCGCGGGGAACACTGTACGCGGCGAGTTTTAGCGACAGGTCATCCCGGTTTATCCCCGCTGGCGCGGGGAACACGGATCTGCCAGCGCCTCTGCGGGGCGGTAAACCGGTTTATCCCCGCTGGCGCGGGGAACACTACGCCAGCCACCTGCTTCGCCAGCCGTTCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTTTGCTCCCATGTTTTGCCGGTAATCCGCATGGTTTATCCCCGCTGGCGCGGGGAACACATCAGCAGCCAATTCCGCCAATGTGGCGTTAGCGGTTTATCCCCGCTGGCGCGGGGAACACAAAGCACGGAATTTTTACAGCGCGTTAGATCCCGGTTTATCCCCGCTGGCGCGGGGAACACAGTGCGGGCGGTTCAGAGGAATTGTTCGTAGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010315|3|1|3148036-3148674|CRT
GGGTGTTCTACCGCAGGGGCGGGGAATTC	TAAGTGATATCCATCATCGCATCCAGTGCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTACTGCTTGGTATGCGGAATCACACCCTGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAAGCATCAAACATTTGGTGGACCAAACGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACGCGGCGAGTTTTAGCGACAGGTCATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGCCAGCCACCTGCTTCGCCAGCCGTTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTGCTCCCATGTTTTGCCGGTAATCCGCA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAGCAGCCAATTCCGCCAATGTGGCGTTAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAGCACGGAATTTTTACAGCGCGTTAGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGCGGGCGGTTCAGAGGAATTGTTCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010315|3|1|3148097-3148674|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTACTGCTTGGTATGCGGAATCACACCCTGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAAGCATCAAACATTTGGTGGACCAAACGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACGCGGCGAGTTTTAGCGACAGGTCATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGCCAGCCACCTGCTTCGCCAGCCGTTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTGCTCCCATGTTTTGCCGGTAATCCGCA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAGCAGCCAATTCCGCCAATGTGGCGTTAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAGCACGGAATTTTTACAGCGCGTTAGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGCGGGCGGTTCAGAGGAATTGTTCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010315|3|3|3148097-3148674|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTACTGCTTGGTATGCGGAATCACACCCTGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAAGCATCAAACATTTGGTGGACCAAACGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACGCGGCGAGTTTTAGCGACAGGTCATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGCCAGCCACCTGCTTCGCCAGCCGTTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTGCTCCCATGTTTTGCCGGTAATCCGCA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAGCAGCCAATTCCGCCAATGTGGCGTTAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAGCACGGAATTTTTACAGCGCGTTAGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGCGGGCGGTTCAGAGGAATTGTTCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010315.1\|WP_000029328.1\|3152436_3152973_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP010315.1\|WP_001090387.1\|3144388_3145816_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP010315.1\|WP_077790350.1\|3154629_3157329_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP010315.1\|WP_000956458.1\|3157522_3157675_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP010315.1\|WP_000206443.1\|3151369_3152425_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP010315.1\|WP_000246138.1\|3142176_3142887_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP010315.1\|WP_001246104.1\|3143410_3143734_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP010315.1\|WP_000039842.1\|3157939_3158674_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP010315.1\|WP_001173673.1\|3143783_3144389_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP010315.1\|WP_000281446.1\|3149980_3150631_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP010315.1\|WP_000517476.1\|3142905_3143217_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP010315.1\|WP_000372108.1\|3145817_3146726_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP010315.1\|WP_001295182.1\|3139909_3140671_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP010315.1\|WP_000144861.1\|3149060_3149984_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP010315.1\|WP_001084084.1\|3152969_3154532_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP010315.1\|WP_000085051.1\|3150612_3151359_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP010315.1\|WP_000063176.1\|3148770_3149064_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP010315.1\|WP_000568943.1\|3140651_3141701_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP010315.1\|WP_000490426.1\|3146977_3148015_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP010315.1\|WP_001219242.1\|3141697_3142177_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
NZ_CP010315.1\|WP_000029328.1\|3152436_3152973_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	6.46033e-29
NZ_CP010315.1\|WP_001090387.1\|3144388_3145816_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP010315.1\|WP_077790350.1\|3154629_3157329_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.77024e-176
NZ_CP010315.1\|WP_000956458.1\|3157522_3157675_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP010315.1\|WP_000206443.1\|3151369_3152425_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.21697e-155
NZ_CP010315.1\|WP_000246138.1\|3142176_3142887_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP010315.1\|WP_001246104.1\|3143410_3143734_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP010315.1\|WP_000039842.1\|3157939_3158674_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.33579e-136
NZ_CP010315.1\|WP_001173673.1\|3143783_3144389_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP010315.1\|WP_000281446.1\|3149980_3150631_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.0289e-91
NZ_CP010315.1\|WP_000517476.1\|3142905_3143217_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP010315.1\|WP_000372108.1\|3145817_3146726_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP010315.1\|WP_001295182.1\|3139909_3140671_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP010315.1\|WP_000144861.1\|3149060_3149984_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.67486e-158
NZ_CP010315.1\|WP_001084084.1\|3152969_3154532_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP010315.1\|WP_000085051.1\|3150612_3151359_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.83917e-49
NZ_CP010315.1\|WP_000063176.1\|3148770_3149064_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP010315.1\|WP_000568943.1\|3140651_3141701_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP010315.1\|WP_000490426.1\|3146977_3148015_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP010315.1\|WP_001219242.1\|3141697_3142177_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104

>NZ_CP010315.1|WP_000490426.1|3146977_3148015_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP010315.1|WP_000372108.1|3145817_3146726_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP010315.1|WP_001090387.1|3144388_3145816_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFINRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP010315.1|WP_001173673.1|3143783_3144389_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP010315.1|WP_001246104.1|3143410_3143734_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP010315.1|WP_000517476.1|3142905_3143217_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP010315.1|WP_000246138.1|3142176_3142887_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP010315.1|WP_001219242.1|3141697_3142177_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP010315.1|WP_000568943.1|3140651_3141701_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP010315.1|WP_001295182.1|3139909_3140671_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP010315.1|WP_000063176.1|3148770_3149064_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP010315.1|WP_000144861.1|3149060_3149984_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP010315.1|WP_000281446.1|3149980_3150631_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELRTGQQLCFNLRANPTICKSGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP010315.1|WP_000085051.1|3150612_3151359_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP010315.1|WP_000206443.1|3151369_3152425_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWAMAEKGTEQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP010315.1|WP_000029328.1|3152436_3152973_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGGFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP010315.1|WP_001084084.1|3152969_3154532_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEVEKLREALLSLEHAFQFGPDSPSFMQDFEALTGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKMWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRFVRQIEEGQDADELLSKWNKEIWLFARQDFDERVFTNPYEPVNLERIMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP010315.1|WP_077790350.1|3154629_3157329_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKNRRGEKEGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLAIKALFPRIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAQAMDIKHYWQKALVQAQNALTVFPPKAETAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQEAPLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDGSQRAGKVLICTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRARAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_CP010315.1|WP_000956458.1|3157522_3157675_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP010315.1|WP_000039842.1|3157939_3158674_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMLEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP010315_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010315_4

3174373-3174889

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP010315_4

>merge|NZ_CP010315|4|3174373-3174889|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCATATACAGCAAACCTTCAGAATGCATTCCGGGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCCGTCTGCCTCCAGCCCAGCCCTGGATATTTCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGTTCACTCACGCAACGTCTGAGCGCGTTGACGGTTTATCCCCGCTGGCGCGGGGAACTCAGGGCCGCCGCTACCCCAGAAGTGCCACTCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGTATCGTCTCGTTATTGCGCCGCCCCAACTCGGTTTATCCCCGCTGGCGCGGGGAACTCAGTATGCGTTCAATCACTGTCAGGCCTACTTCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGTTGCCCGATGGACACTCCCAGACCATCAGCCGGTTTATCCCCGCTGGCGCGGGGAACTCACTAAACTTAATGATGGCCGTTACAGCGTGGACGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP010315|4|4|3174373-3174889|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGTCTGCCTCCAGCCCAGCCCTGGATATTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGTTCACTCACGCAACGTCTGAGCGCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGGGCCGCCGCTACCCCAGAAGTGCCACTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGTATCGTCTCGTTATTGCGCCGCCCCAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTATGCGTTCAATCACTGTCAGGCCTACTTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTTGCCCGATGGACACTCCCAGACCATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACTAAACTTAATGATGGCCGTTACAGCGTGGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP010315|4|2|3174373-3174889|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGTCTGCCTCCAGCCCAGCCCTGGATATTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGTTCACTCACGCAACGTCTGAGCGCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGGGCCGCCGCTACCCCAGAAGTGCCACTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGTATCGTCTCGTTATTGCGCCGCCCCAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTATGCGTTCAATCACTGTCAGGCCTACTTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTTGCCCGATGGACACTCCCAGACCATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACTAAACTTAATGATGGCCGTTACAGCGTGGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP010315|4|2|3174374-3174889|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACTCA	TATACAGCAAACCTTCAGAATGCATTCCGGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CCGTCTGCCTCCAGCCCAGCCCTGGATATTTC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	GGTTCACTCACGCAACGTCTGAGCGCGTTGAC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GGGCCGCCGCTACCCCAGAAGTGCCACTCCCC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CGTATCGTCTCGTTATTGCGCCGCCCCAACTC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GTATGCGTTCAATCACTGTCAGGCCTACTTCC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GTTGCCCGATGGACACTCCCAGACCATCAGCC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	CTAAACTTAATGATGGCCGTTACAGCGTGGAC
GGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010315.1\|WP_001324445.1\|3166136_3166916_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP010315.1\|WP_000254738.1\|3181237_3181573_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP010315.1\|WP_001164578.1\|3170952_3172230_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP010315.1\|WP_001130266.1\|3164556_3165132_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP010315.1\|WP_001295150.1\|3163017_3164289_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP010315.1\|WP_044502314.1\|3172256_3173735_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP010315.1\|WP_000210878.1\|3178510_3180148_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP010315.1\|WP_000109532.1\|3164279_3164540_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP010315.1\|WP_001071648.1\|3180375_3181167_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP010315.1\|WP_000226815.1\|3181898_3184133_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP010315.1\|WP_044502315.1\|3184180_3185482_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP010315.1\|WP_000021330.1\|3169848_3170634_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP010315.1\|WP_000581937.1\|3181572_3181821_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP010315.1\|WP_001288227.1\|3176038_3176179_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010315.1\|WP_044502313.1\|3168324_3169779_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP010315.1\|WP_000147666.1\|3166893_3168303_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP010315.1\|WP_001268446.1\|3176192_3177065_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP010315.1\|WP_001199979.1\|3175228_3175900_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP010315.1\|WP_001384738.1\|3165279_3166140_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP010315.1\|WP_000036723.1\|3177124_3178423_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
NZ_CP010315.1\|WP_001324445.1\|3166136_3166916_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.46503e-62
NZ_CP010315.1\|WP_000254738.1\|3181237_3181573_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP010315.1\|WP_001164578.1\|3170952_3172230_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.84544e-29
NZ_CP010315.1\|WP_001130266.1\|3164556_3165132_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP010315.1\|WP_001295150.1\|3163017_3164289_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
NZ_CP010315.1\|WP_044502314.1\|3172256_3173735_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	8.22099e-108
NZ_CP010315.1\|WP_000210878.1\|3178510_3180148_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP010315.1\|WP_000109532.1\|3164279_3164540_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.6328e-41
NZ_CP010315.1\|WP_001071648.1\|3180375_3181167_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP010315.1\|WP_000226815.1\|3181898_3184133_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP010315.1\|WP_044502315.1\|3184180_3185482_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP010315.1\|WP_000021330.1\|3169848_3170634_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14687e-138
NZ_CP010315.1\|WP_001268446.1\|3176192_3177065_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.56011e-100
NZ_CP010315.1\|WP_044502313.1\|3168324_3169779_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.19062e-82
NZ_CP010315.1\|WP_000147666.1\|3166893_3168303_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP010315.1\|WP_000581937.1\|3181572_3181821_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP010315.1\|WP_001199979.1\|3175228_3175900_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.23739e-155
NZ_CP010315.1\|WP_001384738.1\|3165279_3166140_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.38228e-89
NZ_CP010315.1\|WP_000036723.1\|3177124_3178423_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>NZ_CP010315.1|WP_044502314.1|3172256_3173735_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYITSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNYFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP010315.1|WP_001164578.1|3170952_3172230_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP010315.1|WP_000021330.1|3169848_3170634_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAASCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP010315.1|WP_044502313.1|3168324_3169779_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAEATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP010315.1|WP_000147666.1|3166893_3168303_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP010315.1|WP_001324445.1|3166136_3166916_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWRDYLRQRMQP
>NZ_CP010315.1|WP_001384738.1|3165279_3166140_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLIIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPKVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP010315.1|WP_001130266.1|3164556_3165132_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP010315.1|WP_000109532.1|3164279_3164540_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP010315.1|WP_001295150.1|3163017_3164289_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>NZ_CP010315.1|WP_001199979.1|3175228_3175900_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP010315.1|WP_001288227.1|3176038_3176179_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP010315.1|WP_001268446.1|3176192_3177065_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIKVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>NZ_CP010315.1|WP_000036723.1|3177124_3178423_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP010315.1|WP_000210878.1|3178510_3180148_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP010315.1|WP_001071648.1|3180375_3181167_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP010315.1|WP_000254738.1|3181237_3181573_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP010315.1|WP_000581937.1|3181572_3181821_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP010315.1|WP_000226815.1|3181898_3184133_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP010315.1|WP_044502315.1|3184180_3185482_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGHGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Crispr_ID: NZ_CP010315_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010315_5

3612125-3612264

Orphan

Consensus_repeat	Method
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010315_5

>merge|NZ_CP010315|5|3612125-3612264|CRISPRCasFinder
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAAACGTAGGTCAGATAAGGTGTTTACGCCGCATCCGACTGCTGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAA

>NZ_CP010315|5|5|3612125-3612264|CRISPRCasFinder
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	ACGTAGGTCAGATAAGGTGTTTACGCCGCATCCGACTGCTGT
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010315.1\|WP_000449030.1\|3614689_3615133_-\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP010315.1\|WP_001136488.1\|3603940_3606457_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP010315.1\|WP_001295551.1\|3613428_3614064_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP010315.1\|WP_000130392.1\|3618790_3619798_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP010315.1\|WP_000646033.1\|3611535_3612111_+\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP010315.1\|WP_044502341.1\|3612315_3613356_-\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_CP010315.1\|WP_000809262.1\|3607601_3608462_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NZ_CP010315.1\|WP_001158034.1\|3610935_3611526_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NZ_CP010315.1\|WP_001295552.1\|3615969_3616494_-\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP010315.1\|WP_001323952.1\|3601395_3602151_+\|galactosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|182064
NZ_CP010315.1\|WP_000816988.1\|3606467_3607559_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP010315.1\|WP_000908554.1\|3615472_3615976_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP010315.1\|WP_000189314.1\|3615183_3615486_+\|DNA-damage-response-exodeoxyribonuclease-YhbQ	unknown	unknown	gnl\|CDD\|178979
NZ_CP010315.1\|WP_000249160.1\|3608526_3610563_+\|penicillin-binding-protein-activator-LpoA	unknown	unknown	gnl\|CDD\|225649
NZ_CP010315.1\|WP_000044770.1\|3603215_3603911_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP010315.1\|WP_001301318.1\|3617706_3618585_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP010315.1\|WP_000037608.1\|3614191_3614710_+\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|153228
NZ_CP010315.1\|WP_001045434.1\|3602551_3603136_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP010315.1\|WP_000246837.1\|3610520_3610916_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|129354
NZ_CP010315.1\|WP_000421305.1\|3616702_3617698_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896

Protein	Function_ID	Function_description	E-value
NZ_CP010315.1\|WP_000449030.1\|3614689_3615133_-\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	2.19601e-100
NZ_CP010315.1\|WP_001136488.1\|3603940_3606457_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP010315.1\|WP_001295551.1\|3613428_3614064_-\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89133e-65
NZ_CP010315.1\|WP_000130392.1\|3618790_3619798_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP010315.1\|WP_000646033.1\|3611535_3612111_+\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.97056e-117
NZ_CP010315.1\|WP_044502341.1\|3612315_3613356_-\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	3.21941e-61
NZ_CP010315.1\|WP_000809262.1\|3607601_3608462_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NZ_CP010315.1\|WP_001158034.1\|3610935_3611526_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	5.61903e-143
NZ_CP010315.1\|WP_001295552.1\|3615969_3616494_-\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	6.78212e-85
NZ_CP010315.1\|WP_001323952.1\|3601395_3602151_+\|galactosamine-6-phosphate-isomerase	gnl\|CDD\|182064	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional.	1.51027e-147
NZ_CP010315.1\|WP_000816988.1\|3606467_3607559_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	3.34626e-21
NZ_CP010315.1\|WP_000908554.1\|3615472_3615976_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.31299e-64
NZ_CP010315.1\|WP_000189314.1\|3615183_3615486_+\|DNA-damage-response-exodeoxyribonuclease-YhbQ	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	3.58629e-45
NZ_CP010315.1\|WP_000249160.1\|3608526_3610563_+\|penicillin-binding-protein-activator-LpoA	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	6.33924e-141
NZ_CP010315.1\|WP_000044770.1\|3603215_3603911_+\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	9.16141e-79
NZ_CP010315.1\|WP_001301318.1\|3617706_3618585_+\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP010315.1\|WP_000037608.1\|3614191_3614710_+\|protein/nucleic-acid-deglycase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	6.06977e-86
NZ_CP010315.1\|WP_001045434.1\|3602551_3603136_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.76746e-31
NZ_CP010315.1\|WP_000246837.1\|3610520_3610916_+\|YraN-family-protein	gnl\|CDD\|129354	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved].	3.92681e-63
NZ_CP010315.1\|WP_000421305.1\|3616702_3617698_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87234e-118

>NZ_CP010315.1|WP_000646033.1|3611535_3612111_+|divisome-associated-lipoprotein-YraP
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
>NZ_CP010315.1|WP_001158034.1|3610935_3611526_+|DnaA-initiator-associating-protein-DiaA
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
>NZ_CP010315.1|WP_000246837.1|3610520_3610916_+|YraN-family-protein
MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEVEWIKDAFNDHS
>NZ_CP010315.1|WP_000249160.1|3608526_3610563_+|penicillin-binding-protein-activator-LpoA
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS
>NZ_CP010315.1|WP_000809262.1|3607601_3608462_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG
>NZ_CP010315.1|WP_000816988.1|3606467_3607559_+|fimbrial-protein
MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQAGYYKLNDSLDIKTTLKANDIPGLVTDQTVSVNTRFTQIKSNTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNAPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVIVR
>NZ_CP010315.1|WP_001136488.1|3603940_3606457_+|fimbrial-biogenesis-outer-membrane-usher-protein
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYSGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSVNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>NZ_CP010315.1|WP_000044770.1|3603215_3603911_+|molecular-chaperone
MSKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDNVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
>NZ_CP010315.1|WP_001045434.1|3602551_3603136_+|type-1-fimbrial-protein
MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRSVGDRSPKIPFTIPLVNCPVTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAGTAATGVGIRIDDAESGNLMPLNAMGNDNTVYQIPADSAGIVNVDLIAYYVSTVEASEITPGEADAVVNVTLDYR
>NZ_CP010315.1|WP_001323952.1|3601395_3602151_+|galactosamine-6-phosphate-isomerase
MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHSNFICLINT
>NZ_CP010315.1|WP_044502341.1|3612315_3613356_-|permease
MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFCGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVLMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGTVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF
>NZ_CP010315.1|WP_001295551.1|3613428_3614064_-|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
>NZ_CP010315.1|WP_000037608.1|3614191_3614710_+|protein/nucleic-acid-deglycase
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP010315.1|WP_000449030.1|3614689_3615133_-|YhbP-family-protein
METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYNRRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA
>NZ_CP010315.1|WP_000189314.1|3615183_3615486_+|DNA-damage-response-exodeoxyribonuclease-YhbQ
MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD
>NZ_CP010315.1|WP_000908554.1|3615472_3615976_-|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEYHEHFNRF
>NZ_CP010315.1|WP_001295552.1|3615969_3616494_-|SCP2-domain-containing-protein
MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKTAPETKQTSVGEPC
>NZ_CP010315.1|WP_000421305.1|3616702_3617698_+|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ
>NZ_CP010315.1|WP_001301318.1|3617706_3618585_+|U32-family-peptidase
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
>NZ_CP010315.1|WP_000130392.1|3618790_3619798_+|LLM-class-flavin-dependent-oxidoreductase
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPNVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG

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Crispr_ID: NZ_CP010315_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010315_6

4817184-4817333

Orphan

Consensus_repeat	Method
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010315_6

>merge|NZ_CP010315|6|4817184-4817333|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>NZ_CP010315|6|6|4817184-4817333|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTG
CGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010315.1\|WP_000583470.1\|4807815_4808268_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP010315.1\|WP_000256670.1\|4807077_4807671_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP010315.1\|WP_001197411.1\|4826305_4827337_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_CP010315.1\|WP_000786393.1\|4816572_4817016_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP010315.1\|WP_000002953.1\|4811309_4811726_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP010315.1\|WP_000397144.1\|4817369_4818881_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP010315.1\|WP_001059398.1\|4811771_4812275_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP010315.1\|WP_044502395.1\|4808390_4809974_+\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP010315.1\|WP_001295681.1\|4820247_4821330_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP010315.1\|WP_001128347.1\|4824135_4825455_-\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP010315.1\|WP_001318460.1\|4828120_4829140_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP010315.1\|WP_044502396.1\|4821490_4822993_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP010315.1\|WP_000998695.1\|4825517_4826282_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NZ_CP010315.1\|WP_000584114.1\|4819147_4820248_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP010315.1\|WP_000012908.1\|4810134_4811148_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP010315.1\|WP_000416392.1\|4813717_4816573_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP010315.1\|WP_000079660.1\|4812467_4813664_+\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP010315.1\|WP_000500725.1\|4806293_4807007_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP010315.1\|WP_001309159.1\|4823070_4824069_-\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_CP010315.1\|WP_000896738.1\|4827553_4828117_+\|gluconokinase	unknown	unknown	gnl\|CDD\|182097

Protein	Function_ID	Function_description	E-value
NZ_CP010315.1\|WP_000583470.1\|4807815_4808268_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.50239e-70
NZ_CP010315.1\|WP_000256670.1\|4807077_4807671_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.0374e-10
NZ_CP010315.1\|WP_001197411.1\|4826305_4827337_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP010315.1\|WP_000786393.1\|4816572_4817016_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	3.51045e-66
NZ_CP010315.1\|WP_000002953.1\|4811309_4811726_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP010315.1\|WP_000397144.1\|4817369_4818881_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP010315.1\|WP_001059398.1\|4811771_4812275_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.01499e-18
NZ_CP010315.1\|WP_044502396.1\|4821490_4822993_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP010315.1\|WP_001295681.1\|4820247_4821330_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP010315.1\|WP_001318460.1\|4828120_4829140_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.21683e-169
NZ_CP010315.1\|WP_001128347.1\|4824135_4825455_-\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP010315.1\|WP_000998695.1\|4825517_4826282_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NZ_CP010315.1\|WP_000584114.1\|4819147_4820248_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP010315.1\|WP_000012908.1\|4810134_4811148_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP010315.1\|WP_000416392.1\|4813717_4816573_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP010315.1\|WP_000079660.1\|4812467_4813664_+\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	1.11898e-150
NZ_CP010315.1\|WP_000500725.1\|4806293_4807007_-\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	2.9267e-149
NZ_CP010315.1\|WP_001309159.1\|4823070_4824069_-\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
NZ_CP010315.1\|WP_000896738.1\|4827553_4828117_+\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126

>NZ_CP010315.1|WP_000786393.1|4816572_4817016_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTIDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP010315.1|WP_000416392.1|4813717_4816573_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP010315.1|WP_000079660.1|4812467_4813664_+|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSLKGFWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
>NZ_CP010315.1|WP_001059398.1|4811771_4812275_-|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>NZ_CP010315.1|WP_000002953.1|4811309_4811726_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP010315.1|WP_000012908.1|4810134_4811148_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSKLNN
>NZ_CP010315.1|WP_044502395.1|4808390_4809974_+|DNA-binding-protein
MSKISGWNFSQNITSADNCKQKNEDLDTWYVGMNDFARIAGGQNSRSNILSPRAFLEFLAKIFTLGYVDFSKRSNEAGRNMMAHIKSSSYIKNNDGSEIMKFVMNNPEGERADLSKVEIEITLASAFNNGIREGHTVIIFTQPDGSTNRYEGKSFERKDESSLHLITNKILACYQREANKEIARLLNIPQELNNSQDLNNSQVSCKDSVDSTITDLLEKPLNNALLAIRKEHLLLMPYVCNESISYLLGEKGILKEIDDLNAVNNYLLNNKKATDNEINDIKVNLSHILIDSLDDAKVNLTPVIDSILEIFLKFPYINDVRILDWCFNKRMQYFGDSEKIKYACSVINHIDFSRDQSKDFSCDQSKIKIAETLFFNLDKEHYKNSRKLQELIWDKLVAYVNDFNLSNQEKSRLILRLFDDVKLLFNEVPVSILVNDIFLKDFFMKQPDFAKWYFYQLIKKYEGEQLYLNELGYVYGNEEKTNEIVKKHPGYVIKIFEEKMGNELKIRTRMMKILRNGKINIYEYMNI
>NZ_CP010315.1|WP_000583470.1|4807815_4808268_+|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP010315.1|WP_000256670.1|4807077_4807671_+|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPLARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTLLKE
>NZ_CP010315.1|WP_000500725.1|4806293_4807007_-|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGEALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NZ_CP010315.1|WP_000397144.1|4817369_4818881_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP010315.1|WP_000584114.1|4819147_4820248_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP010315.1|WP_001295681.1|4820247_4821330_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP010315.1|WP_044502396.1|4821490_4822993_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLEGRRR
>NZ_CP010315.1|WP_001309159.1|4823070_4824069_-|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_CP010315.1|WP_001128347.1|4824135_4825455_-|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIVFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_CP010315.1|WP_000998695.1|4825517_4826282_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NZ_CP010315.1|WP_001197411.1|4826305_4827337_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_CP010315.1|WP_000896738.1|4827553_4828117_+|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_CP010315.1|WP_001318460.1|4828120_4829140_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010315_2	2.1\|277074\|48\|NZ_CP010315\|CRISPRCasFinder	277074-277121	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4089-4136	3	0.938
NZ_CP010315_2	2.1\|277074\|48\|NZ_CP010315\|CRISPRCasFinder	277074-277121	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4088-4135	3	0.938
NZ_CP010315_2	2.1\|277074\|48\|NZ_CP010315\|CRISPRCasFinder	277074-277121	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4088-4135	3	0.938
NZ_CP010315_2	2.1\|277074\|48\|NZ_CP010315\|CRISPRCasFinder	277074-277121	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4088-4135	3	0.938
NZ_CP010315_3	3.1\|3148065\|32\|NZ_CP010315\|CRT	3148065-3148096	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	3	0.906
NZ_CP010315_3	3.1\|3148065\|32\|NZ_CP010315\|CRT	3148065-3148096	32	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	112768-112799	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
NZ_CP010315_4	4.2\|3174463\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174463-3174494	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
NZ_CP010315_4	4.10\|3174464\|32\|NZ_CP010315\|PILER-CR	3174464-3174495	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
NZ_CP010315_5	5.1\|3612174\|42\|NZ_CP010315\|CRISPRCasFinder	3612174-3612215	42	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30214-30255	7	0.833
NZ_CP010315_3	3.1\|3148065\|32\|NZ_CP010315\|CRT	3148065-3148096	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1428097-1428128	8	0.75
NZ_CP010315_3	3.3\|3148187\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148187-3148218	32	MK448454	Streptococcus satellite phage Javan361, complete genome	9192-9223	8	0.75
NZ_CP010315_3	3.5\|3148309\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148309-3148340	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	532343-532374	8	0.75
NZ_CP010315_3	3.6\|3148370\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148370-3148401	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	148991-149022	8	0.75
NZ_CP010315_3	3.6\|3148370\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148370-3148401	32	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	530640-530671	8	0.75
NZ_CP010315_3	3.8\|3148492\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148492-3148523	32	NZ_CP044456	Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence	83495-83526	8	0.75
NZ_CP010315_3	3.8\|3148492\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148492-3148523	32	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	301179-301210	8	0.75
NZ_CP010315_4	4.3\|3174524\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174524-3174555	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
NZ_CP010315_4	4.11\|3174525\|32\|NZ_CP010315\|PILER-CR	3174525-3174556	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
NZ_CP010315_5	5.1\|3612174\|42\|NZ_CP010315\|CRISPRCasFinder	3612174-3612215	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24899-24940	8	0.81
NZ_CP010315_3	3.1\|3148065\|32\|NZ_CP010315\|CRT	3148065-3148096	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141309	9	0.719
NZ_CP010315_3	3.5\|3148309\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148309-3148340	32	NZ_CP040723	Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence	35740-35771	9	0.719
NZ_CP010315_3	3.6\|3148370\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148370-3148401	32	NZ_CP036297	Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence	14953-14984	9	0.719
NZ_CP010315_3	3.6\|3148370\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148370-3148401	32	NZ_CP036288	Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence	14983-15014	9	0.719
NZ_CP010315_3	3.6\|3148370\|32\|NZ_CP010315\|CRT,PILER-CR,CRISPRCasFinder	3148370-3148401	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	3454-3485	9	0.719
NZ_CP010315_5	5.1\|3612174\|42\|NZ_CP010315\|CRISPRCasFinder	3612174-3612215	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24786-24827	9	0.786
NZ_CP010315_4	4.8\|3174829\|32\|NZ_CP010315\|CRISPRCasFinder,CRT	3174829-3174860	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	51062-51093	10	0.688
NZ_CP010315_4	4.16\|3174830\|32\|NZ_CP010315\|PILER-CR	3174830-3174861	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	51062-51093	10	0.688

1. spacer 2.1|277074|48|NZ_CP010315|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

2. spacer 2.1|277074|48|NZ_CP010315|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

3. spacer 2.1|277074|48|NZ_CP010315|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

4. spacer 2.1|277074|48|NZ_CP010315|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

5. spacer 3.1|3148065|32|NZ_CP010315|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*********************.*

6. spacer 3.1|3148065|32|NZ_CP010315|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

taagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

7. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

8. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

9. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

10. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

11. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

12. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

13. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

14. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

15. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

16. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

17. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

18. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

19. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

20. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

21. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

22. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

23. spacer 4.2|3174463|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

24. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

25. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

26. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

27. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

28. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

29. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

30. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

31. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

32. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

33. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

34. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

35. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

36. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

37. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

38. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

39. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

40. spacer 4.10|3174464|32|NZ_CP010315|PILER-CR matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

41. spacer 5.1|3612174|42|NZ_CP010315|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
gcgtaggccagataaggcgtttacgccgcatccggcatttgt	Protospacer
.******.*********.****************.*  .***

42. spacer 3.1|3148065|32|NZ_CP010315|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

taagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

43. spacer 3.3|3148187|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to MK448454 (Streptococcus satellite phage Javan361, complete genome) position: , mismatch: 8, identity: 0.75

tgaagcatcaaacatttggtggaccaaacgga	CRISPR spacer
tgaagaatcaaaaatttggtggattgataaga	Protospacer
***** ****** **********...*  .**

44. spacer 3.5|3148309|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

ggatctgccagcgcctctgcggggcggtaaac	CRISPR spacer
ggatcggccagcgcatctgcgggaggatgatg	Protospacer
***** ******** ********. *.*.*

45. spacer 3.6|3148370|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
ttccgcagccgcctccttcgccagccgtaccc	Protospacer
* *  *****.*** ************* *

46. spacer 3.6|3148370|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
ctggcccatcacctgcttcgccacctgttcgg	Protospacer
.  *** ..************** *.******

47. spacer 3.8|3148492|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044456 (Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcagccaattccgccaatgtggcgttag	CRISPR spacer
atagtaagccaattcagccaatgtcgcgtcaa	Protospacer
** .  ********* ******** ****.*.

48. spacer 3.8|3148492|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcagccaattccgccaatgtggcgttag	CRISPR spacer
atagtaagccaattcagccaatgtcgcgtcaa	Protospacer
** .  ********* ******** ****.*.

49. spacer 4.3|3174524|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** *******

50. spacer 4.11|3174525|32|NZ_CP010315|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** *******

51. spacer 5.1|3612174|42|NZ_CP010315|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaat	Protospacer
 .*******.*******.******************  * .*

52. spacer 3.1|3148065|32|NZ_CP010315|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
.  .* ..***********  ***********

53. spacer 3.5|3148309|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ggatctgccagcgcctctgcggggcggtaaac	CRISPR spacer
gtcgctgccagcgcctcggcgaggcggtctcg	Protospacer
*   ************* ***.******

54. spacer 3.6|3148370|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 9, identity: 0.719

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
cacgcaagccacctgcatcgccagctgccgct	Protospacer
.**** ********** ********.*..

55. spacer 3.6|3148370|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 9, identity: 0.719

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
cacgcaagccacctgcatcgccagctgccgct	Protospacer
.**** ********** ********.*..

56. spacer 3.6|3148370|32|NZ_CP010315|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
ctcggcagccacctgctgcgccagctgcgcaa	Protospacer
. ** ************ *******.*. *..

57. spacer 5.1|3612174|42|NZ_CP010315|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaac	Protospacer
 .*******.*******.******************  * ..

58. spacer 4.8|3174829|32|NZ_CP010315|CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

actaaacttaatgatggccgttacagcgtgga	CRISPR spacer
gagtaacttaatgatgggcgtcacagcagcgg	Protospacer
.   ************* ***.*****.  *.

59. spacer 4.16|3174830|32|NZ_CP010315|PILER-CR matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

actaaacttaatgatggccgttacagcgtgga	CRISPR spacer
gagtaacttaatgatgggcgtcacagcagcgg	Protospacer
.   ************* ***.*****.  *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

557162 : 624089

Enterobacteria_phage(41.51%)

tail,protease,terminase,integrase,lysis,head,holin,transposase,capsid,portal,tRNA

attL 567313:567359|attR 615563:615609

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|557162_558548_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143558.1\|558583_559105_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|559212_559425_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729160.1\|559426_560293_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|560763_561306_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988366.1\|561525_562218_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_000691050.1\|564869_565877_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001323731.1\|565887_566403_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805432.1\|566405_567038_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
567313:567359	attL	NA	NA	NA	NA
WP_001298992.1\|567372_568536_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.0e-200	86.6
WP_000433949.1\|568391_568763_-	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.8e-46	81.0
WP_021514910.1\|568762_569068_-	hypothetical protein	U5P0J0	Shigella_phage	1.8e-48	94.1
WP_001242707.1\|569067_569430_-	phage protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
WP_021514911.1\|569420_569957_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	1.1e-99	97.8
WP_000081287.1\|570084_570909_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000135680.1\|570974_571337_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_021514790.1\|572269_573355_-	ParA family protein	H2BD62	Pseudomonas_phage	3.4e-60	38.7
WP_001410974.1\|573589_574294_-	helix-turn-helix domain-containing protein	G8C7U1	Escherichia_phage	1.3e-68	58.7
WP_000098316.1\|574400_574664_+	hypothetical protein	H6WRX5	Salmonella_phage	1.1e-09	51.7
WP_042033432.1\|574692_575277_+	hypothetical protein	A0A1C9II13	Salmonella_phage	1.9e-57	60.9
WP_001188051.1\|575452_575632_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.7e-15	70.4
WP_044502128.1\|575621_576599_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.3e-139	91.0
WP_000054974.1\|576595_577084_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	4.7e-86	97.5
WP_000210176.1\|577083_577410_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.3e-52	97.2
WP_000767127.1\|577406_577796_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_021562535.1\|577815_578658_+	KilA-N domain-containing protein	S5MC03	Escherichia_phage	1.2e-137	90.7
WP_021562536.1\|578665_579655_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	6.8e-193	98.5
WP_001047122.1\|579668_580421_+	antitermination protein	Q8SBE4	Shigella_phage	8.4e-135	97.6
WP_000966854.1\|580575_581106_+	hypothetical protein	NA	NA	NA	NA
WP_001317671.1\|581287_581482_+	hypothetical protein	Q8SBE3	Shigella_phage	5.7e-27	95.3
WP_000799651.1\|581631_582693_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.7e-203	97.7
WP_000502162.1\|583572_583764_+	hypothetical protein	NA	NA	NA	NA
WP_000284486.1\|583786_584002_+\|holin	holin	M1FN85	Enterobacteria_phage	1.0e-32	95.8
WP_021562537.1\|584006_584351_+	YdfR family protein	K7PGU6	Enterobacteria_phage	5.9e-35	89.3
WP_000370549.1\|584316_584589_-	hypothetical protein	NA	NA	NA	NA
WP_000992107.1\|584694_585228_+	lysozyme	K7PLY1	Enterobacteria_phage	1.1e-99	95.5
WP_001228695.1\|585444_585627_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738425.1\|585717_586011_-	increased serum survival lipoprotein Iss	C6ZCX3	Enterobacteria_phage	1.6e-44	91.8
WP_000830178.1\|586491_586818_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000881608.1\|587024_587207_+	hypothetical protein	NA	NA	NA	NA
WP_033549128.1\|587771_588317_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	8.1e-95	99.4
WP_044502129.1\|588291_590217_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
WP_000198149.1\|590213_590420_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_044502130.1\|590416_592018_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	8.5e-310	98.9
WP_000123225.1\|591998_593318_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	6.2e-234	98.9
WP_001338090.1\|593327_593660_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.5e-55	99.1
WP_044502131.1\|593714_594740_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	8.4e-186	96.5
WP_077790342.1\|594781_595177_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	3.3e-58	96.2
WP_000752994.1\|595188_595542_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_032298608.1\|595553_596132_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	98.4
WP_000683105.1\|596128_596524_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_044502411.1\|596531_597272_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.5e-131	98.8
WP_044502133.1\|597287_597674_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.5e-58	90.6
WP_071925348.1\|597691_598126_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	9.3e-62	95.8
WP_044502134.1\|598118_600698_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	93.4
WP_000847347.1\|600694_601024_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.6e-58	99.1
WP_001152505.1\|601023_601722_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.1e-128	96.1
WP_044502135.1\|601726_602470_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.9e-148	97.2
WP_071781836.1\|602406_603039_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.6e-94	97.6
WP_044502136.1\|603099_606582_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.3
WP_032202908.1\|606648_607248_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	2.2e-109	98.5
WP_071925364.1\|607312_610663_+	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	1.8e-11	35.5
WP_042033242.1\|610662_611247_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	93.8
WP_000239881.1\|611301_611970_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_042033240.1\|612026_612332_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_001226376.1\|612515_614000_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201822.1\|614186_615140_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177453.1\|615652_616414_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
615563:615609	attR	NA	NA	NA	NA
WP_001224569.1\|616596_617487_-	DUF4434 family protein	NA	NA	NA	NA
WP_000662366.1\|617487_620460_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_000420922.1\|622952_624089_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1486566 : 1604053

111

Escherichia_phage(46.3%)

tail,protease,terminase,integrase,lysis,transposase,tRNA

attL 1480950:1480966|attR 1521328:1521344

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1480950:1480966	attL	NA	NA	NA	NA
WP_000628065.1\|1486566_1487799_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387395.1\|1488053_1489037_+	zinc transporter ZntB	NA	NA	NA	NA
WP_000123745.1\|1489514_1490888_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001157405.1\|1491016_1491952_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
WP_071925352.1\|1492003_1493239_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	3.5e-239	98.3
WP_000079604.1\|1493240_1493456_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_000276809.1\|1493534_1493744_-	double-strand break reduction protein RcbA	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
WP_001317028.1\|1493736_1493931_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_000166319.1\|1493987_1494797_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_044502199.1\|1494789_1497390_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	3.9e-248	63.5
WP_000632297.1\|1497491_1497767_-	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
WP_077790356.1\|1497841_1498012_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	1.8e-16	69.6
WP_000560223.1\|1498011_1498233_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
WP_001324055.1\|1498674_1499163_+	superinfection exclusion protein B	NA	NA	NA	NA
WP_001169151.1\|1499159_1499315_-	YdaF family protein	M4QQ57	Salicola_phage	6.1e-08	55.3
WP_000948459.1\|1499768_1500245_-	DNA-binding transcriptional repressor RacR	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
WP_000712069.1\|1500368_1500665_+	toxin YdaS	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
WP_000693797.1\|1500687_1501110_+	phage protein	A0A0U2RXZ9	Escherichia_phage	1.5e-69	95.0
WP_000899746.1\|1501122_1501980_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	8.3e-70	84.5
WP_000788970.1\|1501986_1502733_+	ATP-binding protein	V5UQI5	Shigella_phage	3.8e-111	78.9
WP_044502201.1\|1502755_1503517_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-117	87.4
WP_040091718.1\|1503532_1503937_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.1e-63	93.3
WP_040091717.1\|1504036_1506487_-	hypothetical protein	NA	NA	NA	NA
WP_000940342.1\|1507165_1507765_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	5.5e-105	91.5
WP_000247764.1\|1507764_1508055_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.1e-45	86.5
WP_000640161.1\|1508051_1508594_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.9e-76	75.7
WP_000506936.1\|1509638_1510067_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_001348108.1\|1510238_1510613_+	hypothetical protein	NA	NA	NA	NA
WP_044502202.1\|1510864_1511080_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	2.2e-32	94.4
WP_000193293.1\|1511084_1511429_+	YdfR family protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
WP_000370551.1\|1511394_1511667_-	hypothetical protein	NA	NA	NA	NA
WP_000992105.1\|1511772_1512306_+	lysozyme	K7PLY1	Enterobacteria_phage	4.8e-100	96.0
WP_001228696.1\|1512522_1512708_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.8e-15	98.2
WP_024165216.1\|1512904_1514362_+	potassium transporter TrkG	NA	NA	NA	NA
WP_001291093.1\|1514499_1515291_+	ParB N-terminal domain-containing protein	R4TG31	Halovirus	2.8e-48	40.2
WP_001204035.1\|1515283_1516216_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.1e-83	54.9
WP_000126788.1\|1516193_1516403_+	hypothetical protein	NA	NA	NA	NA
WP_000089450.1\|1516406_1517501_+	hypothetical protein	A0A0U2RXW9	Escherichia_phage	1.0e-112	80.5
WP_044502203.1\|1517481_1518783_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.4e-148	59.3
WP_000763702.1\|1518785_1520192_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	1.0e-186	69.2
WP_001363932.1\|1520175_1521288_+	hypothetical protein	I6PD76	Cronobacter_phage	7.1e-114	54.5
WP_000770042.1\|1521392_1522157_+	hypothetical protein	G8C7P6	Escherichia_phage	6.9e-84	64.2
1521328:1521344	attR	NA	NA	NA	NA
WP_000918487.1\|1522255_1523395_+	hypothetical protein	G8C7P7	Escherichia_phage	7.4e-159	75.0
WP_000634214.1\|1523617_1524013_+	hypothetical protein	NA	NA	NA	NA
WP_000524260.1\|1524012_1524396_+	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
WP_097410841.1\|1524396_1524846_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_000094292.1\|1524872_1525835_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	4.5e-56	39.2
WP_012565075.1\|1525985_1526345_+	hypothetical protein	NA	NA	NA	NA
WP_001755909.1\|1526452_1526653_+	hypothetical protein	NA	NA	NA	NA
WP_044502204.1\|1526816_1529303_+\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	3.3e-87	35.2
WP_044502205.1\|1529309_1530050_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	7.2e-54	48.2
WP_001152425.1\|1530379_1531078_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.9e-128	95.3
WP_001312811.1\|1531083_1531827_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.1e-150	98.0
WP_000741572.1\|1531724_1532372_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.0e-108	94.9
WP_044502206.1\|1532432_1535912_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.5
WP_001233121.1\|1535979_1536579_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	7.2e-105	93.0
WP_044502207.1\|1536643_1540057_+	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	2.4e-11	37.3
WP_040091700.1\|1540056_1540641_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	5.6e-102	94.3
WP_134236106.1\|1540695_1541364_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_040091698.1\|1541420_1541726_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.8e-12	82.6
WP_044502208.1\|1541908_1543393_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_040091696.1\|1543577_1544531_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001295593.1\|1545544_1545979_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_000837924.1\|1546119_1547253_-	porin OmpN	Q1MVN1	Enterobacteria_phage	8.3e-118	58.8
WP_000628148.1\|1547619_1551144_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_001295715.1\|1551417_1551684_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001298828.1\|1551680_1552103_-	heat shock protein HslJ	NA	NA	NA	NA
WP_000762229.1\|1552213_1553203_-	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
WP_000900996.1\|1553410_1556050_+	YdbH family protein	NA	NA	NA	NA
WP_000698141.1\|1556046_1556232_+	YnbE family lipoprotein	NA	NA	NA	NA
WP_001325798.1\|1556236_1556566_+	YdbL family protein	NA	NA	NA	NA
WP_001067491.1\|1556737_1557643_-	transcriptional regulator FeaR	NA	NA	NA	NA
WP_000138615.1\|1557878_1559378_+	phenylacetaldehyde dehydrogenase	NA	NA	NA	NA
WP_001186463.1\|1561956_1564002_-	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
WP_000191073.1\|1564286_1565216_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
WP_000073393.1\|1565227_1565515_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
WP_001072837.1\|1565523_1566270_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA
WP_001189194.1\|1566284_1566782_+	phenylacetate degradation protein PaaD	NA	NA	NA	NA
WP_000206368.1\|1566789_1567860_+	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	NA	NA	NA
WP_044502209.1\|1567856_1568624_+	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA
WP_000969777.1\|1568623_1569412_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
WP_000973371.1\|1569413_1570841_+	3-hydroxyacyl-CoA dehydrogenase PaaC	NA	NA	NA	NA
WP_000018413.1\|1570830_1571253_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA
WP_001206190.1\|1571252_1572458_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_044502210.1\|1572484_1573798_+	phenylacetate--CoA ligase	NA	NA	NA	NA
WP_000041178.1\|1573898_1574849_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA
WP_001123454.1\|1574830_1575421_+	phenylacetic acid degradation protein PaaY	NA	NA	NA	NA
WP_000097794.1\|1575651_1576512_+	pyridoxine 4-dehydrogenase	NA	NA	NA	NA
WP_000177525.1\|1576810_1577416_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_000890910.1\|1577415_1578312_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_044502211.1\|1578327_1580085_+	bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000627379.1\|1580074_1581391_+	phosphatase PAP2/dual specificity phosphatase family protein	NA	NA	NA	NA
WP_000048948.1\|1581441_1582047_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_044502212.1\|1582247_1586150_+	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	2.2e-53	29.5
WP_001027942.1\|1586421_1587222_+	YdcF family protein	NA	NA	NA	NA
WP_000115944.1\|1587418_1588858_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000048667.1\|1588899_1589901_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_001307188.1\|1590089_1590620_+	cytochrome b561	A0A0U2QLA7	Escherichia_phage	3.1e-19	44.9
WP_000731833.1\|1590864_1591038_+	periplasmic protein	A0A0R6PKG1	Moraxella_phage	4.4e-07	67.4
WP_001320773.1\|1591109_1591259_-	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_001098532.1\|1591657_1593298_+	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_000414560.1\|1593335_1594259_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_044502213.1\|1594475_1595819_+	VOC family protein	NA	NA	NA	NA
WP_000375956.1\|1596043_1597699_+	glucan biosynthesis protein OpgD	NA	NA	NA	NA
WP_001296778.1\|1597838_1598063_+	YdcH family protein	NA	NA	NA	NA
WP_000140891.1\|1598125_1598662_+	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_001234034.1\|1598656_1599637_-	LbetaH domain-containing protein	NA	NA	NA	NA
WP_001190278.1\|1599760_1600753_+	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_000586732.1\|1600749_1601343_+	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_001261020.1\|1601644_1602313_+	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_000826466.1\|1602844_1604053_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	1.6e-207	93.0

DBSCAN-SWA_3

1767855 : 1817474

Enterobacteria_phage(35.0%)

tail,terminase,integrase,lysis

attL 1789740:1789755|attR 1822169:1822184

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000527758.1\|1767855_1769316_-	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	4.3e-42	29.8
WP_044502223.1\|1769404_1770688_-	MHS family MFS transporter	NA	NA	NA	NA
WP_120795384.1\|1771290_1771404_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|1771472_1771706_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000086527.1\|1772022_1772613_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_001698950.1\|1772710_1773286_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	94.8
WP_071925355.1\|1773285_1776648_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	1.4e-11	36.4
WP_032292241.1\|1776712_1777312_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	2.9e-106	95.0
WP_044502227.1\|1777379_1780859_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.4
WP_044502228.1\|1781486_1782230_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_044502229.1\|1782234_1782933_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.9e-125	94.0
WP_000847347.1\|1782932_1783262_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.6e-58	99.1
WP_071925356.1\|1783258_1784623_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	3.9e-207	93.9
WP_001549229.1\|1784619_1786545_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
WP_000453603.1\|1786519_1787065_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	8.1e-95	98.9
WP_001368374.1\|1787452_1787686_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
WP_000373090.1\|1787743_1788154_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
WP_001019606.1\|1788305_1788479_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001309517.1\|1788650_1788806_-	hypothetical protein	NA	NA	NA	NA
WP_120795388.1\|1788884_1788950_-	Qin prophage; protein YnfR	NA	NA	NA	NA
WP_071524604.1\|1788952_1789141_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|1789151_1789364_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_044502230.1\|1789726_1790224_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.1e-05	28.8
1789740:1789755	attL	NA	NA	NA	NA
WP_044502231.1\|1790220_1790754_-	lysozyme	K7PLY1	Enterobacteria_phage	1.9e-96	92.7
WP_000189916.1\|1790750_1791062_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_000839590.1\|1791066_1791282_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000066484.1\|1792035_1792251_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000087756.1\|1792551_1792764_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_120795389.1\|1792818_1792908_+	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_001047135.1\|1793185_1793938_-	antitermination protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
WP_001265198.1\|1793951_1795001_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
WP_012304870.1\|1795002_1795281_-	hypothetical protein	NA	NA	NA	NA
WP_000980994.1\|1795347_1795599_-	hypothetical protein	NA	NA	NA	NA
WP_000813254.1\|1795815_1795971_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000323025.1\|1796042_1796330_-	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000534858.1\|1796329_1796569_-	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_001326990.1\|1796593_1796899_+	hypothetical protein	NA	NA	NA	NA
WP_001301033.1\|1797101_1797434_+	protein FlxA	NA	NA	NA	NA
WP_000955178.1\|1799362_1799545_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	6.3e-12	74.5
WP_072096395.1\|1799519_1799738_-	hypothetical protein	NA	NA	NA	NA
WP_001310834.1\|1800851_1801208_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-38	69.6
WP_001151262.1\|1801204_1801627_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	92.0
WP_000054512.1\|1801667_1802633_-	hypothetical protein	U5P0A0	Shigella_phage	2.2e-55	60.2
WP_000705358.1\|1802613_1803135_-	hypothetical protein	NA	NA	NA	NA
WP_000920568.1\|1803118_1803349_-	dicB transcriptional regulator DicC	NA	NA	NA	NA
WP_000448564.1\|1803432_1803840_+	DNA-binding transcriptional dual regulator DicA	K7PM82	Enterobacteria_phage	4.4e-13	54.7
WP_000379575.1\|1804006_1804162_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_001171942.1\|1804321_1804540_+	hypothetical protein	NA	NA	NA	NA
WP_001329848.1\|1804543_1804708_-	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|1805107_1805296_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083297.1\|1805292_1805484_+\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_000048342.1\|1805576_1808048_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
WP_001296941.1\|1808135_1808372_+	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_044502232.1\|1808406_1809687_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	2.1e-154	61.8
WP_001360138.1\|1809706_1809817_-	hypothetical protein	NA	NA	NA	NA
WP_000836079.1\|1809874_1810894_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	9.7e-17	25.9
WP_001295394.1\|1810905_1812120_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000598292.1\|1812325_1812652_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000705211.1\|1812786_1813128_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138581.1\|1813162_1813723_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001321287.1\|1813725_1814436_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001307224.1\|1814543_1814849_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_000041558.1\|1815047_1817474_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.0
1822169:1822184	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2172365 : 2263408

103

Escherichia_phage(41.3%)

tail,integrase,terminase,head,holin,capsid,portal,protease

attL 2239067:2239082|attR 2289281:2289296

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001774913.1\|2172365_2173583_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_000413227.1\|2173663_2174404_+	hypothetical protein	NA	NA	NA	NA
WP_001160187.1\|2175099_2175648_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_001283421.1\|2175704_2177537_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_000611335.1\|2177533_2178190_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_000590344.1\|2178485_2178662_+	hypothetical protein	NA	NA	NA	NA
WP_000106474.1\|2178648_2178873_+	DUF2594 family protein	NA	NA	NA	NA
WP_001154273.1\|2178940_2179663_-	transcriptional regulator SdiA	NA	NA	NA	NA
WP_001272994.1\|2179892_2180645_-	L-cystine ABC transporter ATP-binding protein YecC	G3M9Y6	Bacillus_virus	3.8e-26	34.9
WP_001158220.1\|2180641_2181310_-	cystine ABC transporter permease	NA	NA	NA	NA
WP_001128215.1\|2181324_2182311_-	D-cysteine desulfhydrase	NA	NA	NA	NA
WP_001295643.1\|2182415_2183216_-	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001384571.1\|2183303_2183855_-	flagella biosynthesis regulatory protein FliZ	NA	NA	NA	NA
WP_001087473.1\|2183900_2184620_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_000079737.1\|2184939_2186781_-	flagellin FliC	NA	NA	NA	NA
WP_000146780.1\|2187046_2188453_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_000270663.1\|2188477_2188888_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_001015023.1\|2188887_2189253_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_001245719.1\|2189330_2190818_+	alpha-amylase	NA	NA	NA	NA
WP_001295642.1\|2190851_2191265_-	lipoprotein	NA	NA	NA	NA
WP_000118901.1\|2191451_2192657_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_000789493.1\|2192653_2192887_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_044502250.1\|2192995_2193664_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.6e-81	60.4
WP_001274299.1\|2194056_2194371_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_000994436.1\|2194585_2196244_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_000067950.1\|2196236_2197232_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_001282692.1\|2197224_2197911_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_000213294.1\|2197910_2199284_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_000620089.1\|2199741_2200869_+	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_000133106.1\|2200973_2201438_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_001295641.1\|2201442_2202447_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_001282098.1\|2202443_2202857_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_001302429.1\|2202859_2203225_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001253447.1\|2203224_2203962_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_044502251.1\|2203971_2204241_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_000104001.1\|2205324_2205948_+	transcriptional regulator RcsA	NA	NA	NA	NA
WP_071524607.1\|2205991_2206234_-	protein DsrB	NA	NA	NA	NA
WP_000844800.1\|2206342_2206570_+	peroxide/acid resistance protein YodD	NA	NA	NA	NA
WP_000949112.1\|2206867_2207683_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_001351766.1\|2207679_2209374_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.3e-18	35.6
WP_000009307.1\|2209611_2209794_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_000922682.1\|2209872_2210790_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_001212225.1\|2210962_2211883_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_000228683.1\|2211871_2212342_-	VSPR family DNA mismatch endonuclease	E5E3X5	Burkholderia_phage	1.8e-34	49.0
WP_001157256.1\|2212322_2213741_-	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	4.0e-101	54.8
WP_000826783.1\|2215054_2216413_-	two-component system sensor histidine kinase HprS	Q8QKV7	Ectocarpus_siliculosus_virus	5.1e-05	19.4
WP_001339045.1\|2216412_2217084_-	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	5.4e-32	35.2
WP_000920132.1\|2217216_2217630_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_000740111.1\|2217738_2218743_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_001240090.1\|2218743_2219379_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_001007754.1\|2219635_2220286_+	metal-binding protein ZinT	NA	NA	NA	NA
WP_044502252.1\|2221876_2222458_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.5e-99	91.7
WP_071925357.1\|2222457_2225871_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	1.4e-11	36.4
WP_032241503.1\|2225935_2226535_-	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	1.3e-109	98.0
WP_044502255.1\|2226602_2230082_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.2
WP_000090949.1\|2230142_2230745_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.6e-86	84.7
WP_032241748.1\|2230681_2231425_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.7e-148	97.2
WP_001152459.1\|2231429_2232128_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.7e-129	96.1
WP_001330090.1\|2232127_2232484_-\|tail	tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
WP_024257906.1\|2232461_2235689_-\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.0
WP_071590020.1\|2235735_2235996_-	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	1.6e-40	97.7
WP_001312914.1\|2236037_2236424_-\|tail	tail assembly protein	A0A1B5FP91	Escherichia_phage	6.8e-64	100.0
WP_000097533.1\|2236423_2237128_-	hypothetical protein	A0A1B5FP82	Escherichia_phage	1.5e-117	96.2
WP_001209399.1\|2237187_2237532_-	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	4.2e-57	100.0
WP_001312916.1\|2237528_2237978_-	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	7.9e-64	80.5
WP_001147820.1\|2237974_2238313_-\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	1.6e-56	99.1
WP_000983037.1\|2238321_2238627_-\|head,tail	phage gp6-like head-tail connector protein	A0A1B5FP86	Escherichia_phage	9.2e-40	100.0
WP_000601355.1\|2238638_2238827_-	hypothetical protein	A0A1B5FP98	Escherichia_phage	7.2e-27	100.0
WP_000257522.1\|2238877_2240083_-\|capsid	phage major capsid protein	A0A1B5FPI9	Escherichia_phage	1.0e-222	99.3
2239067:2239082	attL	NA	NA	NA	NA
WP_001193631.1\|2240097_2240748_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_000466255.1\|2240725_2241967_-\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
WP_000478564.1\|2241966_2242149_-	hypothetical protein	A0A1B5FP99	Escherichia_phage	2.5e-24	95.0
WP_001140903.1\|2242160_2243918_-\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.7
WP_001312917.1\|2243917_2244400_-\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	4.3e-84	97.5
WP_001111090.1\|2244547_2244898_-	HNH endonuclease	A0A1B5FP94	Escherichia_phage	4.3e-65	98.3
WP_000351660.1\|2245036_2245576_+	hypothetical protein	NA	NA	NA	NA
WP_001100260.1\|2245581_2245848_-	hypothetical protein	NA	NA	NA	NA
WP_001228685.1\|2246065_2246251_-	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	6.4e-20	80.3
WP_000992100.1\|2246467_2247001_-	lysozyme	Q08J98	Stx2-converting_phage	3.6e-100	94.4
WP_000193289.1\|2247064_2247415_-	YdfR family protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
WP_000839572.1\|2247419_2247635_-\|holin	holin	M1FN85	Enterobacteria_phage	5.3e-34	98.6
WP_001064896.1\|2248447_2249137_-	antiterminator	I6PDF8	Cronobacter_phage	2.8e-60	51.1
WP_044502258.1\|2249133_2249493_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	4.1e-39	67.5
WP_044502259.1\|2249505_2250555_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.4e-108	54.6
WP_001360223.1\|2250556_2250835_-	hypothetical protein	I6PCV7	Cronobacter_phage	6.3e-11	49.2
WP_000975572.1\|2250901_2251165_-	hypothetical protein	NA	NA	NA	NA
WP_040073344.1\|2251382_2251595_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	9.9e-25	95.4
WP_122998651.1\|2251639_2251771_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	3.0e-08	69.4
WP_039005580.1\|2252442_2253033_-	RloB domain-containing protein	NA	NA	NA	NA
WP_039005582.1\|2253060_2254374_-	ATP-binding protein	NA	NA	NA	NA
WP_157915105.1\|2255091_2255634_-	replication protein	A0A0U2JGJ0	Escherichia_phage	3.7e-84	98.0
WP_044502261.1\|2255545_2256583_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	3.3e-89	87.8
WP_000705377.1\|2256554_2257106_-	hypothetical protein	NA	NA	NA	NA
WP_000476986.1\|2257089_2257317_-	transcriptional regulator	NA	NA	NA	NA
WP_001003379.1\|2257394_2257802_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-24	45.4
WP_001092153.1\|2258130_2258331_-	hypothetical protein	NA	NA	NA	NA
WP_044502263.1\|2258423_2258642_+	hypothetical protein	NA	NA	NA	NA
WP_001296188.1\|2258645_2258810_-	hypothetical protein	NA	NA	NA	NA
WP_000854558.1\|2259209_2259398_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001070255.1\|2259394_2259586_+	DUF1482 family protein	NA	NA	NA	NA
WP_044502264.1\|2259679_2262121_+	exonuclease	V5UQJ3	Shigella_phage	1.0e-112	46.2
WP_000096344.1\|2262179_2262383_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000533619.1\|2262382_2263408_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-102	57.9
2289281:2289296	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2427099 : 2487943

Escherichia_phage(39.53%)

tail,terminase,integrase,lysis,head,plate,holin,capsid,portal,tRNA

attL 2456662:2456676|attR 2489639:2489653

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044502274.1\|2427099_2428503_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	7.0e-34	29.8
WP_000137873.1\|2428499_2429222_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.9e-30	33.2
WP_000929408.1\|2429412_2429745_+	YegP family protein	NA	NA	NA	NA
WP_001307279.1\|2429953_2430250_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_001220181.1\|2430251_2430548_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000476011.1\|2430650_2432012_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.1e-217	100.0
WP_000468308.1\|2432285_2432504_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_000882975.1\|2432585_2433749_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	3.7e-206	99.7
WP_001471798.1\|2433748_2434228_-\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	1.1e-84	99.4
WP_044502275.1\|2434242_2436690_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	99.0
WP_000785970.1\|2436682_2436802_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031307.1\|2436834_2437110_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.2e-40	98.9
WP_001251408.1\|2437166_2437685_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001403133.1\|2437697_2438888_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.4e-224	99.5
WP_044502276.1\|2439486_2440479_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_044502277.1\|2440872_2441400_-\|tail	tail fiber assembly protein	Q858V3	Yersinia_virus	1.5e-90	94.9
WP_000104724.1\|2441403_2443626_-	hypothetical protein	Q858V4	Yersinia_virus	8.8e-156	40.8
WP_001285314.1\|2443636_2444167_-\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	1.0e-102	100.0
WP_001534994.1\|2444159_2445068_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	3.7e-161	99.3
WP_000127160.1\|2445072_2445420_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.1e-57	99.1
WP_001093722.1\|2445416_2446052_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	3.4e-113	99.1
WP_021547832.1\|2446135_2446921_+	hypothetical protein	NA	NA	NA	NA
WP_001297845.1\|2446992_2447445_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	5.3e-76	98.7
WP_000917158.1\|2447437_2447905_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	1.5e-81	98.7
WP_001300730.1\|2447867_2448041_-	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_044502278.1\|2448012_2448438_-\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	1.0e-65	95.7
WP_044502279.1\|2448425_2448851_-	hypothetical protein	U5N096	Enterobacteria_phage	6.6e-60	98.6
WP_001144101.1\|2448865_2449363_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000123124.1\|2449362_2449644_-\|holin	holin	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_044502280.1\|2449647_2449851_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	1.2e-30	98.5
WP_000988633.1\|2449850_2450360_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000203442.1\|2450459_2451197_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	1.3e-127	98.0
WP_001248575.1\|2451200_2452274_-\|capsid	phage major capsid protein, P2 family	Q94MH9	Enterobacteria_phage	1.1e-201	99.7
WP_001085978.1\|2452332_2453187_-\|capsid	GPO family capsid scaffolding protein	Q94MH0	Enterobacteria_phage	6.2e-134	98.6
WP_044502281.1\|2453360_2455133_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.7
WP_044502282.1\|2455132_2456167_+\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	1.2e-200	99.4
WP_044502283.1\|2456532_2458005_-	ATP-binding protein	NA	NA	NA	NA
2456662:2456676	attL	NA	NA	NA	NA
WP_028985816.1\|2458096_2460349_-	replication endonuclease	S4TTC1	Salmonella_phage	0.0e+00	92.3
WP_000027674.1\|2460338_2460614_-	DUF5405 family protein	S4TP00	Salmonella_phage	1.9e-44	97.8
WP_001113271.1\|2460610_2460835_-	TraR/DksA family transcriptional regulator	A0A0F7LDI3	Escherichia_phage	8.5e-35	97.3
WP_001512913.1\|2460834_2461137_-	DUF5405 family protein	A0A0F7LCL4	Escherichia_phage	1.2e-44	95.0
WP_000557703.1\|2461136_2461361_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_000217671.1\|2461424_2461925_-	hypothetical protein	S4TTB7	Salmonella_phage	1.7e-91	99.4
WP_000043869.1\|2462102_2462378_-	hypothetical protein	Q1JS62	Enterobacteria_phage	1.3e-48	100.0
WP_001306384.1\|2462492_2462792_+	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	2.5e-50	100.0
WP_001512914.1\|2462907_2463921_+\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	3.7e-194	99.4
WP_000716757.1\|2464186_2464504_-	hypothetical protein	NA	NA	NA	NA
WP_000807362.1\|2464909_2465809_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
WP_000178552.1\|2465890_2466670_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000844208.1\|2466769_2467810_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000490679.1\|2467857_2469213_-	galactitol permease IIC component	NA	NA	NA	NA
WP_000823272.1\|2469216_2469501_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182914.1\|2469531_2469984_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000853886.1\|2469993_2471256_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_000289788.1\|2471284_2472139_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_044502284.1\|2472448_2473501_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000858498.1\|2473757_2475035_+	MFS transporter	NA	NA	NA	NA
WP_000846217.1\|2475031_2476036_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	7.5e-14	29.4
WP_021535094.1\|2476032_2476998_+	kinase	NA	NA	NA	NA
WP_000434038.1\|2476971_2477718_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000822274.1\|2478656_2479457_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001195605.1\|2479453_2480242_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000141032.1\|2480588_2480828_+	hypothetical protein	NA	NA	NA	NA
WP_000617145.1\|2480993_2481239_-	hypothetical protein	NA	NA	NA	NA
WP_000594465.1\|2481250_2481970_-	hypothetical protein	NA	NA	NA	NA
WP_000870791.1\|2482116_2482299_-	hypothetical protein	NA	NA	NA	NA
WP_001273871.1\|2484063_2484615_+	recombinase family protein	Q2A092	Sodalis_phage	2.0e-29	43.9
WP_001316486.1\|2484781_2485246_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000737406.1\|2485356_2485704_+	hypothetical protein	NA	NA	NA	NA
WP_000240373.1\|2485781_2486507_-	HNH endonuclease	NA	NA	NA	NA
WP_001257775.1\|2486635_2487943_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2489639:2489653	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2510637 : 2520078

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292774.1\|2510637_2511774_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_001317947.1\|2511770_2513771_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001295429.1\|2513895_2514357_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_000950409.1\|2514396_2514867_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
WP_000598641.1\|2514913_2515633_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2515629_2517315_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|2517536_2518268_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001216963.1\|2518327_2518435_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|2518415_2519147_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569358.1\|2519151_2520078_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8

DBSCAN-SWA_7

3127488 : 3140671

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|3127488_3130050_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141340.1\|3130155_3130812_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
WP_001272549.1\|3130862_3131660_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.9e-70	56.3
WP_000847985.1\|3131825_3132734_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590392.1\|3132730_3133993_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|3133989_3134628_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_001136918.1\|3134632_3135409_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_000104456.1\|3135497_3136862_+	GntP family transporter	NA	NA	NA	NA
WP_000081524.1\|3136955_3137948_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.0e-31	37.6
WP_001272592.1\|3138010_3139150_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
WP_000254708.1\|3139289_3139916_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
WP_001295182.1\|3139909_3140671_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0

DBSCAN-SWA_8

4790887 : 4858710

Vibrio_phage(20.0%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162171.1\|4790887_4792240_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_001232240.1\|4792422_4792809_+	cytochrome b562	NA	NA	NA	NA
WP_001106222.1\|4792853_4793318_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	1.1e-52	59.7
WP_000187778.1\|4793475_4795614_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	1.5e-266	64.5
WP_001339491.1\|4796007_4797663_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_001299664.1\|4797712_4799134_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_001181324.1\|4799252_4800200_-	HTH-type transcriptional regulator TreR	C6ZCU4	Enterobacteria_phage	7.9e-13	21.8
WP_001387276.1\|4800384_4800438_+	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_000471889.1\|4800578_4803275_+	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	9.0e-46	27.4
WP_000047538.1\|4803480_4803867_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000148581.1\|4803939_4804401_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000013046.1\|4804413_4805349_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.9e-52	40.2
WP_001296693.1\|4805352_4805487_-	pyr operon leader peptide	NA	NA	NA	NA
WP_000230277.1\|4805767_4806163_-	RidA family protein	NA	NA	NA	NA
WP_000500725.1\|4806293_4807007_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000256670.1\|4807077_4807671_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000583470.1\|4807815_4808268_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_044502395.1\|4808390_4809974_+	DNA-binding protein	NA	NA	NA	NA
WP_000012908.1\|4810134_4811148_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000002953.1\|4811309_4811726_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_001059398.1\|4811771_4812275_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000079660.1\|4812467_4813664_+	DUF898 domain-containing protein	NA	NA	NA	NA
WP_000416392.1\|4813717_4816573_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.8e-140	36.7
WP_000786393.1\|4816572_4817016_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000397144.1\|4817369_4818881_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
WP_000584114.1\|4819147_4820248_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_001295681.1\|4820247_4821330_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_044502396.1\|4821490_4822993_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	4.6e-84	44.2
WP_001309159.1\|4823070_4824069_-	DNA-binding transcriptional regulator IdnR	NA	NA	NA	NA
WP_001128347.1\|4824135_4825455_-	gnt-II system L-idonate transporter	NA	NA	NA	NA
WP_000998695.1\|4825517_4826282_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_001197411.1\|4826305_4827337_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA
WP_000896738.1\|4827553_4828117_+	gluconokinase	NA	NA	NA	NA
WP_001318460.1\|4828120_4829140_-	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.4e-44	30.7
WP_000483767.1\|4833697_4835044_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_000179691.1\|4835652_4836870_+	MFS transporter	NA	NA	NA	NA
WP_000611568.1\|4836881_4838000_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000594405.1\|4838042_4838168_+	hypothetical protein	NA	NA	NA	NA
WP_000254999.1\|4838220_4838478_-	hypothetical protein	NA	NA	NA	NA
WP_085948656.1\|4838791_4839958_+\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	99.3
WP_000625671.1\|4839893_4840307_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_001293436.1\|4840369_4842367_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
WP_000336726.1\|4842520_4843339_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_000088391.1\|4843374_4843677_-\|transposase	transposase	NA	NA	NA	NA
WP_000177057.1\|4844610_4844868_+	hypothetical protein	NA	NA	NA	NA
WP_000175457.1\|4845424_4846192_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
WP_000684856.1\|4846192_4847149_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
WP_000125187.1\|4847145_4848144_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_044502397.1\|4848140_4849043_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_000188262.1\|4849087_4851412_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_001068910.1\|4851498_4852452_-	fec operon regulator FecR	NA	NA	NA	NA
WP_001283626.1\|4852448_4852970_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_000555341.1\|4854719_4854977_+	hypothetical protein	NA	NA	NA	NA
WP_000823250.1\|4855727_4857086_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_000998019.1\|4857324_4858710_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-259	89.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010316

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17222 : 71497

Macacine_betaherpesvirus(25.0%)

integrase,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085974881.1\|17222_18495_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.1e-174	97.7
WP_000450494.1\|19719_20913_+	hypothetical protein	NA	NA	NA	NA
WP_000974762.1\|23173_24115_+	hypothetical protein	NA	NA	NA	NA
WP_001312828.1\|24911_26282_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_000733252.1\|26285_28226_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	3.0e-35	39.0
WP_000928804.1\|28222_29410_-	efflux RND transporter periplasmic adaptor subunit	A0A140XAI1	Dickeya_phage	1.0e-09	55.7
WP_085949156.1\|30863_32077_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	6.0e-167	98.6
WP_001312823.1\|32259_32418_+\|transposase	transposase	NA	NA	NA	NA
WP_000280980.1\|33690_34644_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_000771475.1\|35076_36186_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_000175738.1\|36248_37157_+	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_001332052.1\|37530_37719_+	hypothetical protein	NA	NA	NA	NA
WP_001066953.1\|37839_38580_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_000361611.1\|38864_39842_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	4.6e-101	63.9
WP_000949004.1\|42823_43738_+	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_000983710.1\|43737_44565_+	iron/manganese ABC transporter ATP-binding protein SitB	A0A1M7XV31	Cedratvirus	3.6e-14	27.0
WP_000992806.1\|44561_45419_+	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_000968139.1\|45415_46273_+	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_001318207.1\|47515_47896_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.9e-26	55.0
WP_000095526.1\|48275_49469_-	MFS transporter	NA	NA	NA	NA
WP_000602863.1\|49604_51329_+	aerobactin synthase IucA	NA	NA	NA	NA
WP_000011907.1\|51329_52277_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001015721.1\|52276_54019_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_000750130.1\|54015_55293_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_000973517.1\|55374_57576_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_000163251.1\|58808_59471_-	hypothetical protein	NA	NA	NA	NA
WP_000190053.1\|59910_60390_-	hypothetical protein	NA	NA	NA	NA
WP_000238252.1\|60507_60957_+	hypothetical protein	A0A222YWI5	Escherichia_phage	5.0e-42	67.1
WP_000715081.1\|61584_63087_+	hypothetical protein	NA	NA	NA	NA
WP_000925960.1\|63312_63504_+	hypothetical protein	NA	NA	NA	NA
WP_001238646.1\|66108_67275_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.6e-228	99.7
WP_000817028.1\|67274_68246_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	8.8e-169	96.6
WP_000343071.1\|69464_70040_+	hypothetical protein	NA	NA	NA	NA
WP_000092896.1\|70052_70265_+	hypothetical protein	NA	NA	NA	NA
WP_000082155.1\|70525_71497_-\|transposase	IS110-like element ISEc32 family transposase	Q75QL1	Wolbachia_phage	8.3e-26	32.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP010317

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

76317 : 87607

Salmonella_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011117598.1\|76317_76743_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.8e-50	70.0
WP_044502556.1\|76755_78045_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	3.3e-171	72.8
WP_001138014.1\|79000_81967_-\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001161490.1\|81970_82531_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001323888.1\|82519_82687_+	hypothetical protein	A0A1B0V7I9	Salmonella_phage	2.3e-24	98.2
WP_001323889.1\|82840_84418_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	1.2e-95	99.4
WP_106121298.1\|85530_86758_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.0e-174	97.7
WP_011117596.1\|86843_87206_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_011117595.1\|87253_87607_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	9.7e-25	48.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010315

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010316

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP010317

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection