CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP010270	Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence	0 crisprs	DinG	0	0
NZ_CP010269	Paenibacillus polymyxa strain Sb3-1 plasmid pSb31s, complete sequence	0 crisprs	NA	0	0
NZ_CP010268	Paenibacillus polymyxa strain Sb3-1 chromosome, complete genome	2 crisprs	DinG,csa3,DEDDh,WYL,cas3	1	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010268_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010268_1

1949263-1949354

Orphan

Consensus_repeat	Method
CCTGGTGGTGCGCCTGGTCCAGCAGGTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010268_1

>merge|NZ_CP010268|1|1949263-1949354|CRISPRCasFinder
CCTGGTGGTGCGCCTGGTCCAGCAGGTGTGCCGGGCCCACCAGGACCTCCCGGACCTGTGGGGCCTGGCGGTGCGCCTGGTCCAGCAGGTGT

>NZ_CP010268|1|1|1949263-1949354|CRISPRCasFinder
CCTGGTGGTGCGCCTGGTCCAGCAGGTGT	GCCGGGCCCACCAGGACCTCCCGGACCTGTGGGG
CCTGGCGGTGCGCCTGGTCCAGCAGGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010268.1\|WP_040102185.1\|1951099_1953529_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_CP010268.1\|WP_040102188.1\|1958803_1960768_-\|PTS-system-trehalose-specific-EIIBC-component	unknown	unknown	gnl\|CDD\|273916
NZ_CP010268.1\|WP_040102184.1\|1944666_1948557_+\|DUF5011-domain-containing-protein	unknown	unknown	gnl\|CDD\|366285
NZ_CP010268.1\|WP_040102183.1\|1942330_1944031_-\|spore-germination-protein	unknown	unknown	gnl\|CDD\|377020
NZ_CP010268.1\|WP_016819418.1\|1938736_1939228_-\|phenolic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|368644
NZ_CP010268.1\|WP_013369294.1\|1962878_1963460_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|182377
NZ_CP010268.1\|WP_040102181.1\|1940011_1941217_-\|Ger(x)C-family-spore-germination-protein	unknown	unknown	gnl\|CDD\|274338
NZ_CP010268.1\|WP_040102187.1\|1957977_1958727_-\|trehalose-operon-repressor	unknown	unknown	gnl\|CDD\|274116
NZ_CP010268.1\|WP_013369299.1\|1955560_1956664_+\|GerAB/ArcD/ProY-family-transporter	unknown	unknown	gnl\|CDD\|281794
NZ_CP010268.1\|WP_013369303.1\|1950727_1951057_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239606
NZ_CP010268.1\|WP_040102182.1\|1941213_1942308_-\|GerAB/ArcD/ProY-family-transporter	unknown	unknown	gnl\|CDD\|281794
NZ_CP010268.1\|WP_040102180.1\|1939388_1939937_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378427
NZ_CP010268.1\|WP_040102177.1\|1935372_1936053_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP010268.1\|WP_025675705.1\|1956656_1957856_+\|Ger(x)C-family-spore-germination-protein	unknown	unknown	gnl\|CDD\|274338
NZ_CP010268.1\|WP_040102186.1\|1953846_1955535_+\|spore-germination-protein	unknown	unknown	gnl\|CDD\|377020
NZ_CP010268.1\|WP_040102178.1\|1936267_1937611_+\|glycoside-hydrolase-family-30-protein	unknown	unknown	gnl\|CDD\|307945
NZ_CP010268.1\|WP_025677980.1\|1937774_1938170_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|334619
NZ_CP010268.1\|WP_040102189.1\|1960873_1962601_-\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|274115
NZ_CP010268.1\|WP_013369306.1\|1944276_1944618_+\|microcystin-dependent-protein	unknown	unknown	gnl\|CDD\|227020
NZ_CP010268.1\|WP_040102190.1\|1963572_1964127_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339

Protein	Function_ID	Function_description	E-value
NZ_CP010268.1\|WP_040102185.1\|1951099_1953529_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NZ_CP010268.1\|WP_040102188.1\|1958803_1960768_-\|PTS-system-trehalose-specific-EIIBC-component	gnl\|CDD\|273916	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component. This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.	0
NZ_CP010268.1\|WP_040102184.1\|1944666_1948557_+\|DUF5011-domain-containing-protein	gnl\|CDD\|366285	pfam00754, F5_F8_type_C, F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.	8.9689e-14
NZ_CP010268.1\|WP_040102183.1\|1942330_1944031_-\|spore-germination-protein	gnl\|CDD\|377020	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein.	0
NZ_CP010268.1\|WP_016819418.1\|1938736_1939228_-\|phenolic-acid-decarboxylase	gnl\|CDD\|368644	pfam05870, PA_decarbox, Phenolic acid decarboxylase (PAD). This family consists of several bacterial phenolic acid decarboxylase proteins. Phenolic acids, also called substituted cinnamic acids, are important lignin-related aromatic acids and natural constituents of plant cell walls. These acids (particularly ferulic, p-coumaric, and caffeic acids) bind the complex lignin polymer to the hemicellulose and cellulose in plants. The Phenolic acid decarboxylase (PAD) gene (pad) is transcriptionally regulated by p-coumaric, ferulic, or caffeic acid; these three acids are the three substrates of PAD.	4.7793e-101
NZ_CP010268.1\|WP_013369294.1\|1962878_1963460_-\|LysE-family-transporter	gnl\|CDD\|182377	PRK10323, PRK10323, cysteine/O-acetylserine transporter.	1.9354e-40
NZ_CP010268.1\|WP_040102181.1\|1940011_1941217_-\|Ger(x)C-family-spore-germination-protein	gnl\|CDD\|274338	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Sporulation and germination].	2.66933e-80
NZ_CP010268.1\|WP_040102187.1\|1957977_1958727_-\|trehalose-operon-repressor	gnl\|CDD\|274116	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions].	9.85447e-105
NZ_CP010268.1\|WP_013369299.1\|1955560_1956664_+\|GerAB/ArcD/ProY-family-transporter	gnl\|CDD\|281794	pfam03845, Spore_permease, Spore germination protein.	3.15531e-78
NZ_CP010268.1\|WP_013369303.1\|1950727_1951057_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	9.03703e-36
NZ_CP010268.1\|WP_040102182.1\|1941213_1942308_-\|GerAB/ArcD/ProY-family-transporter	gnl\|CDD\|281794	pfam03845, Spore_permease, Spore germination protein.	2.00849e-76
NZ_CP010268.1\|WP_040102180.1\|1939388_1939937_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|378427	pfam10400, Vir_act_alpha_C, Virulence activator alpha C-term. This structure is homo-dimeric, and the domain here is the C-terminal half of the structure, often associated with PadR upstream, (pfam03551), which is a transcriptional regulator.	8.74166e-19
NZ_CP010268.1\|WP_040102177.1\|1935372_1936053_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.62565e-85
NZ_CP010268.1\|WP_025675705.1\|1956656_1957856_+\|Ger(x)C-family-spore-germination-protein	gnl\|CDD\|274338	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Sporulation and germination].	5.39097e-83
NZ_CP010268.1\|WP_040102186.1\|1953846_1955535_+\|spore-germination-protein	gnl\|CDD\|377020	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein.	0
NZ_CP010268.1\|WP_040102178.1\|1936267_1937611_+\|glycoside-hydrolase-family-30-protein	gnl\|CDD\|307945	pfam02055, Glyco_hydro_30, Glycosyl hydrolase family 30 TIM-barrel domain.	5.69785e-49
NZ_CP010268.1\|WP_025677980.1\|1937774_1938170_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|334619	pfam01638, HxlR, HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.	2.73782e-43
NZ_CP010268.1\|WP_040102189.1\|1960873_1962601_-\|alpha,alpha-phosphotrehalase	gnl\|CDD\|274115	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.	0
NZ_CP010268.1\|WP_013369306.1\|1944276_1944618_+\|microcystin-dependent-protein	gnl\|CDD\|227020	COG4675, MdpB, Microcystin-dependent protein [Function unknown].	3.63109e-28
NZ_CP010268.1\|WP_040102190.1\|1963572_1964127_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.18726e-21

>NZ_CP010268.1|WP_040102184.1|1944666_1948557_+|DUF5011-domain-containing-protein
MLEGNSFTRNKLKPYRVLVPLMPLISGAFLFIGTNEAHAAGWENVVFNKPTTSSGYTQPYDPSRAVDGSVDPTSRWYQASNGEKWIQVDLRDWYIVDRYVVTGMGVHYGWNDQRDPYSFRLQTSSNGFNWATVDTVQNNGSSNFQKSIPPVTARYLRLYIDQGNARNNQWASIMEFAAYGERLPVPQAPGHFTGIKNGNTVELSWDAVPYATSYKVVRDGITLYTGSLTQFIDTSALPPGEAVYTVQAVNAKGESTPSEVKVNILTDAERVAQAKAALALSLAPGDTVESVSQKLTLPLTGLNDTTVSWSSDTPDVITNEGTVIRPRYDLGDQKVKLTATITKGTASDTQTFEVTVSKMTAQDTLNQAADALSLGDLSAVQENVSLPLSGYGGVQIAWSSSKPLVIAADGTLTRPSYSSGDTDVTLTATLQLAGLTKTKDFTAHVLRLPMSDTEAVNAAYRALELPLTTVTGDVYLAKDALNGVQVSWSSNQPQFLDHTGHVTFPTYVQGDQNITLEAVVSRGGVELRKTFSLLVPALPVSADEAVNLAAKTLNLDYPQGIKDSIALPRTGAFATQIDWSSDRPDILSDSGQVNRPKYTDGDMNVQLIAMISKGTASVQRSFTITVLKALPNTPYVRLNGSNPIVLETGDSFTDPGASVLDSVYGNILIPDLSGIGNVDTNVPGVYVLNYTYSDNGSWTAEPAERRINVLPRAVAAAAGDEDIASVIVTGALPNARLELYNAQQELIAEGIASSEGKYTFTPVPEGASYYVLQNVNGMKSAPSGLVSPQGLTAQRVADSIISIPAPTTSDTMLILPAVPDGFRVTISSSSQPDIVRTDGTIFQRDTPSVVTIILDVLKASDGSHALTQAIKVIVPAKVTVGTGKSNKDKNEDQDLSAGVQQIVFSEQGKAVSLFVPSPAFLDEQIQQALREGKAYADIRLEQEKQMSRVLLTHSVLNKWEQIGASVISRYGTLMLSSDTLTSMAASGQQDVTISFQQADQQFRDWAEQQSNLKLIGAAVEIKANVTGTSSIVLPLDSESSSELQNVEPQFSILVMYENGEREILKGTAVINSQGILSGVSLNTPRLGTFAVAVSTDASQVDQTDVQNDPIHSSDSQEPAQVWPDLQDHWAAKSLQSLAAKGWMQGYKDGNMRPERAVSRAEFVAILIRALGTTGDESLSTSFTDMKGHWAGSAVDAAHRQGWIQGLTAQTFGPNESLTREQAMVILSHAMQNQTSVSSPTGLQSYKDDQQIASWASTAFEKAIGSGWISGYPDGTLKPKSAISRGEMAELLVRIFK
>NZ_CP010268.1|WP_013369306.1|1944276_1944618_+|microcystin-dependent-protein
MKNHFLKKTAVLSLLAVILLGGTAISPKQAQASPEPYIGEITMYPYTYAPKGWIKCEGQLLDISQNSVLFSLLGTNFGGDGVRTFALPDLRGASPLPNVNYYIATEGPYPSRP
>NZ_CP010268.1|WP_040102183.1|1942330_1944031_-|spore-germination-protein
MWKVIGTHVPKWNVWVEALFLFIIPLIIFLTVRQLKALDGRESRRKERLKLLEEEDRSEQADHNPSISEAEKAKGTFTEDYEANVAKIRQAVTDMADVNERAIFLDNLNAEGTLFFVDGLTDKVGMDQNILKPLMDWGSSGQEREELPRGKELRDMIVHQVMLVSETEYTLEVQFSLQKVLFGSVILMIQGIPGAFVLGTPKGSTRGVEDPISESVLRGPRVGFTETLSDNTAMLRRHGESTELAMSSFKVGKRVEKQLMVVYFRDIADPELVDEVKRRVQTIDMDEVLESGYVEQLIEDNFLSPFLQIQNTERPDRVMAALLEGRVAILLDGTPFALLMPVTYGMMLQSPEDYYERWLPGSLIRFLRFMATFISLFAPALYISFISFHPGLIPTKLVISIISARQGVPFSTLIEALIMETSIEILREAGLRLPKPIGPAMGIVGGLIIGQAAVDAGIVSPILVIVVAVTAISSFSAPVYSAGISMRVLRFGAMFTASIFGLYGVIMFFLMLSIHMVKLHSFGVPFLSLTTPRSFKDWKDYFIRAPLQFMKNRPILLKHKDPKRQG
>NZ_CP010268.1|WP_040102182.1|1941213_1942308_-|GerAB/ArcD/ProY-family-transporter
MARGKKADKITTLQTTAIVVCFMLAAGLLTLPRVATEAAKTPDAWISVILAGVATFLFGWVIVKLSSRFPESTFYQYVQQITGKFIGKGIGMLIVIYFVCIAAFEIRSVEEVTSFFLLEGTPAWAISAPFMWLSLYLCMGGVGSLGKICQLIFPVSAAIFLLICLLSLNIFELNNLRPVLSEGVMPVLRTLKTTILTLTGTESLLIILCRMEKPEKATKAIGLAIGIAVVFYTATLILCIGAFSMEGVLSRTWPFLDLARSFEVEYLLLERFESLLLTIWIMQIFATFSIAFYCASLGVSQILNSSYSKMLFILLPLIYLLSQIPKNLNELFSFGTVIGNVAFALFALLPLPLLLISYWRGARS
>NZ_CP010268.1|WP_040102181.1|1940011_1941217_-|Ger(x)C-family-spore-germination-protein
MNRVRVQSGLLGLMALLMCCTLSGCWSSSPVEDLNLETGIALDIAEESSQEKQINQEGGDYPKKELITGTFQFVIPEESGGSNSSSPQAKKFFNITETGDSVFEMIREISLRTNRPPIGQHLKTVIISSSLLRKIPLYELLDFFLGDNDIRPSVQLLISTEKAGHALQEKIPGQIPAYILKDIFQNRKRNARLIKPMAFVKVIGPMKGERSFILPNVITAENEIKLAGAGIIKGKTQTYGGYLNESEVEGLMWIKGDLKGGVLKSSDPKTGKNIAYEIKAVKSKIKAIVQGDDIFFQVKMTSEGRISEVHIKHENLRNNNVLGQEESLFQEKVNSLAEQTVAKMKKLKVDVGGFGEALRIQHPKVWRKVKKDWDTTFSTIPVRFSTDIHIEDYGSSITTAD
>NZ_CP010268.1|WP_040102180.1|1939388_1939937_+|PadR-family-transcriptional-regulator
MKRTLKYAILGLVHKEEMSGYDITSQFKQEIGQFWSAKHSQIYPELKRLTEEGLIEYRTSITGAKLEKKLYCITPKGTQELTEWLLSPKELPETEKDEFMLMLYFSAAIPKEESKHLFEDQIAKREEKLEYLYESKKSLQRLDENLQVPGSSQFGHYLVLSRAINREESYITWLKETLSLFK
>NZ_CP010268.1|WP_016819418.1|1938736_1939228_-|phenolic-acid-decarboxylase
MDKFIGSHMIYTYENGWEYEIYIKNEDTIDYRIHSGMVGGRWVRDQKVNLVKLVENVYKVSWTEPTGTDVSLNFMPEEKRMHGIIFFPKWVHEHPEITVRYQNDFIPLMEESREKYETYPKYVVPEFADITFIENAGVNNEQLISQAPYAGMTDDIRAGKLQA
>NZ_CP010268.1|WP_025677980.1|1937774_1938170_+|winged-helix-turn-helix-transcriptional-regulator
MNITTVKDRIDLKLINCDKELTLAVIGGKWKLIILWHLGMEGTKRFGELKKLIPHITQKMLTNQLRELEEDKLILRKVYPVVPPHVEYSLTEHGESLIPVLRAMYDWGSNYRENVIWKEEKEEVIQDVTPV
>NZ_CP010268.1|WP_040102178.1|1936267_1937611_+|glycoside-hydrolase-family-30-protein
MSNPTIQWFSTSKANAWQSQAHHLTETQESANLTLTGEAYQLVEGFGGCFNELSYVALNHLESEEREQVLHALFHPEGEHKFTICRLPIGASDYALEWYSHNETDGDMEMKHFSIERDQQYLIPFIREALQLNPDLKLFASPWSPPTWMKSPKAYNYGTLRWEKDILKAYALYFVKFVQAYRKAGITIHQVHVQNEVIADQKFPSCVWTGEQLREFIRDYLGPAFEEHGLDTEIWLGTINAPDPWEELMKKTSTGFDEYAHTVLSDPEAYKYIKGVGYQWAGKNAIQRTVASYPELRYMQTENECGNGENSWDYAKYVYNLYQHYFTNGVNAYIYWNMVLEPKGKSTWGWEQNSMITVDPANRKPILNPEYYVMKHFSHFVLPGARRIGIRGSWAGNAVAFQNTNGQKVLVIANPFKKSRVLNLSVGETTHRLELEPESFNTIVIPA
>NZ_CP010268.1|WP_040102177.1|1935372_1936053_-|response-regulator-transcription-factor
MNKRVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALLWFDSVQPELIILDIMMPELDGWEVCRQVRSRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEGHVQPESHILRFGSAMLNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVVSRDAILNRVWGIDFEGDTRVVDTHIKKLRSKLGRESRHIRTVFGTGYRFEEEE
>NZ_CP010268.1|WP_013369303.1|1950727_1951057_-|nitrite-reductase-small-subunit-NirD
MIKNAEWLVVGHSKDFPIRIGRTIHVKGAEIAVFRTSENKLYAVENSNPHPKGGPLTEAIVSGHYIYDPLYDWKIDLQTGLVQEPDHGQIKTFAVCEEGEVVKISLETV
>NZ_CP010268.1|WP_040102185.1|1951099_1953529_-|NAD(P)/FAD-dependent-oxidoreductase
MINSKKKLVVIGNGMAGINTVEQILKLTDKYEITVLGSEPHPNYNRIMLSYVLEGSKTIDDIILNDLQWYADQGITLYTGKMVKSIDGEHKKIHTEDGLEIDYDVALVATGSQSFILPIPGKELPGVIGFRDIADCSAMLEAAKTYKKAAVIGGGLLGLEAAKGLVNLGMDVTVVHLMEDLMERQLDREASAMLKAELERQGIKFAMQMQTAEVYGQDRVQGLRFSDGSELEADLVVMAVGIKPNIQVAKESGMETNRGIVVDDFMRTSMPDVYAVGECVEHRGICYGLVAPLFEQGSVIAKHLAGVDTEGYAGSVVSTKLKISGVDVFSAGEFITQPEHTAIVAKDEWKRTYKKVLLRDNKIVGTVLFGDVSESASLQKYVRQQTEMTDEIYGQIMGTGCGNHGAKTSSVETMADDEIVCGCNGVTKKAIVEAINENGLTTVDEIKACTGATRSCGGCKPVVEQILQYVLGDSFKTSAKQGICGCTTLSRDEIVEAIKTKGLTTTREVMNVLGWHNDEGCSKCRPALNYYLGMINPDTYENEGDSRFVNERLHANIQKDGTFTVVPRMYGGVTTPEDLKKIADVSLKYNVKVVKVTGGQRLDLIGVRKEDLPKVWEELDMPSGYAYAKSLRTVKTCVGSQFCRFGTQDSMGMGEVLERKFERLDFPAKFKLAVNGCPRNCAESCTKDIGIVGNDGGWEIFIGGNGGIKARLADSLCKVKTDAELIDIVGAVMQFYRETGQYLERTSEWVERIGLEEIQKAVVNDTANRQALVERVEFALQQVEDPWKKIIHDEDTRKNLFEAVTPSIV
>NZ_CP010268.1|WP_040102186.1|1953846_1955535_+|spore-germination-protein
MWSKIISYLPSWSTLFQAGLALIIPLGIYYINTSIYSFVGSKGAKSKHSSSHPLSNKHNEGNMDQQHEPSSKITGNYDSDLQAIREAIGENSDVHFREFVVKKFHARSVLVFIEGMQDEKLMSKQVLEVLMFEGQQQGQDQQEQPEGISNSFIKESLMPLTQISEVTRMEELYEFILLGHTALLIEGMKEALLVGPPNGAIRSVNEPTSEALLRGPRIGFTEVLSENTSMLRRQGLNKSLEMKKFQVGSRIKKDLVIAYIKDIVNPDLLEEVSRRISKIDMDFLPESGYVEQLIEDNYLSPFQQAHNTERPDRVINALLEGRIAILLDGTPFALIVPVTFSMLLQSPEDYYERWIPGTLLRLLRFSGAFIALMGPALYISFISFHPGLIPTKLVISIIGTRQGVPFPSVIEVMILEISIEILREAGIRLPKPIGPAMGIVGGLVIGDAAVNAGIVSPFLVIVVAVTAISSFSIPTYSAGITLRLLRFVGMFFAAMLGMFGTILFFLLICIHLTKLKSFGVPYVTPFSPMRLSDWKDLYIRAPMSLMKRRPVMMKTQQRKRRS
>NZ_CP010268.1|WP_013369299.1|1955560_1956664_+|GerAB/ArcD/ProY-family-transporter
MFRRSDDKITTKQGAVFLTNTVLGAGILTLPRGVTEQVQTPDAWLSVLIGGAIVIFVVWIMVKLSQQFPRNTMYQYSKRIVGTVPGGFLSVLLIIYFIIIAGFEIRVLAEVTMFFLLEGTPIWAIVIPFIWVGSYLVFGGINSIARLYQIVLPISLFFLLFCFLFSLRIFEIDHLRPVLSDGILPVIKGLKSTILVFSGCEVVMTLVAFMQHPEKAFKAMAVGISIPLVLYFLTVVMVIGGLSVDSTVTSTWPTINLMRSFEIPGFLFERLEFPLLVIWVMQMFCNFCSFFFNASLGVSQVFGLKYRYAIFGLIPFIFISTMTPVRMTEVFRLGDEIGYMGIVLFFLIPVLLSIVFMIRKKGMKQNV
>NZ_CP010268.1|WP_025675705.1|1956656_1957856_+|Ger(x)C-family-spore-germination-protein
MCRRSFLSLLLAFILLVTQVGCWSSKEVEELSIYTGLALDKGELSPLEQDLEKKGSRYFKKNTITTSVQIVPKKSSGSTNQQGGDGGQELNYVNIAGTGDSILEIFRQLSLRLDRPVIGHHLKVIVVSTELAKLQTMQQLMDFVLRDNDIRPSCMVFLSKDRAANTLVTKYTGEIPSIHILNMLRNHFRTSKVMRGVNLSELDGLMHSKKSYILQNITESKGELEFSGAGIIKGETGHWIGALGQQDVESIGWITGDVEGGAVKTYDKRNEAITYEIKSVKSKITTKVGKDDDISFHVKIESKGRLIENWDEKVDPTETRNMKEAEQEFEKQVTRRIKSLMHKLQSEYKVDVAGFGDHLKIDKPQVWKKVKDDWDYKFSKIPVTFDIKLTITDLGSSAE
>NZ_CP010268.1|WP_040102187.1|1957977_1958727_-|trehalose-operon-repressor
MTKNIFLQIYQEYSGRIQTGELAPGSKMPSENELAREYNTSRETVRKALHLLAQNGYIHKIKAKGSFVLDIGRMDFPIGGLVSFKEMSERIGRKSQTIVHKNQLIPVPDDIATHLEIDKDKYLVWEVIRAREIEGECVILDKDYFRSDIVPVLTEEISRESIYEYLEGELHLPISYAKKVVSVEDADEEDRKLMDLQNYTHVVVVRNYVYLEDTTLFQYTESRHRLDKFQFVDFARRSHGEERRSDFLS
>NZ_CP010268.1|WP_040102188.1|1958803_1960768_-|PTS-system-trehalose-specific-EIIBC-component
MAIERAQVEDIIKAVGGKDNIEASTHCVTRLRFALYDDKLVDKDALEQNDLVKGQFSSQGQYQVVIGPGLVDKVYDEMISITGGSRASKDDVKNAASKKQNPIQRAIKTLADIFIPILPAIVTAGLLLGINNILTGKGIFFEGMALVQVYPQWTDFASIINTIASTAFTFLPALIGWSAVVRFGGSPLLGIVLGLILVHPDLLSAYSYADAVTKGTVPVWDLFGWEVNKIGYQGQVLPVLVSAYVLAQIEKFLNKKIADSFKLLLVAPITLLITGFLAFTVIGPVTFMIGNAITTGLVYVFDLAPALGGLIYGGFYALLVITGMHHTFLAVDVQLIGTQGGTFLWPMLALSNIAQGAGALAMMLVLKEQKGKGLALTSSVSAFLGVTEPAIFGVNIRYKYPFVFGMIGSGIAGILLTVNHVLASSIGVGGIPGFLSIFPNNWGVFFVGMAIVLIVPFALTFMYGKLLNKRRQTPATPANDSMRKNSDQQNSALDVLEVKTPVLGHVVPLEQVPDPAFAERQMGQGIAVEPKDGRILAPFSGKVIHIMVKSKHALILEHPTGVQILVHVGINTVSLKGEGFTMHVETGQNVKQGQLLMEFDRELIQKSGYPMITPVIVPEGQSMIESIEELPGEANDLQYVLMRIHLNSSSDKTN
>NZ_CP010268.1|WP_040102189.1|1960873_1962601_-|alpha,alpha-phosphotrehalase
MEAMNKALIPQDKDWWRKSVVYQVYPKSFNDTTGKGTGDIRGLTQKLDYLQGLGVDIIWLQPVYVSPQRDNGYDVADYCRINPDYGTMQDFEELSREIRARGMHLMIDIVVNHSSTEHVWFQQARLSKDSEYRDYYIWRDPAPDGGPPNNWISKFGGPAWQYDEATNQYFLTLFDKTQADLNWENPKVRQEVVNVLEFWAEKGVSGFRLDVINLISKDRQFSDDDGSTAPGDGRKYYTDGPHVHEYLHELYEKVFSLYNSVTVGEMSSTSLDHCIRYSNPDRKELSMTFNFHHLKVDYPNGQKWELMPYDFEMLKKLFSDWQIGMQQGGGWSALFFNNHDQPRAISRFLDDDEYHVESAKLLATTLHGLQGTPYIFQGEEIGMPNPQWSDIEEFRDVESLNMYRILQEQGKSAEEALDIIRERSRDNSRTPMQWDNTRNAGFTTGTPWIKVDERYSQINVQSQLEDPNSIYNHYRKLIRLRKTVQVITDGDYQRLDEAHPQVYAYQRSNEQETLVVISNFSGQDVQFRIPDSFYLSLDNQAVAAAELLIGNTQYAPQLNQVVSLTPYASYMWIVR
>NZ_CP010268.1|WP_013369294.1|1962878_1963460_-|LysE-family-transporter
MPFIPFLSYVLVTSFTPGPNNIMSLDSARRLGLKRAFPFLLGVTAGCFAIMLLACYFNLALYHFLPRVKIWMNVLGSLYMLYLAVKIAKSKSTSEDNDHNEGYSFKSGLLLQFINLKIILYGITVISTFVMPYDVSYMTMFTISLLLTCIGFVAVMCWAIFGAMFQRFLNKYERSFNIIMALLLLYSALSIWI
>NZ_CP010268.1|WP_040102190.1|1963572_1964127_+|helix-turn-helix-domain-containing-protein
MMDNINLILSKNLKHLRYERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISFTALISEPPADAVVVPKSKVQVLEESNHYRLYPFFPYEGNRNFEVYTVEIETGGELSSAPHREGTEEFITVFEGEMVVKVSEETYTVKAGDSIRFKADRPHIYYNLGETLVRMNMIIYYSV

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Crispr_ID: NZ_CP010268_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010268_2

4063186-4063261

Orphan

Consensus_repeat	Method
ATGCCAACAGACCCACGGTGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010268_2

>merge|NZ_CP010268|2|4063186-4063261|CRISPRCasFinder
ATGCCAACAGACCCACGGTGACTCCGGCGGCATATGCTCACCTTGGAATTCCCATGCCAACAGACCCACGGTGACT

>NZ_CP010268|2|2|4063186-4063261|CRISPRCasFinder
ATGCCAACAGACCCACGGTGACT	CCGGCGGCATATGCTCACCTTGGAATTCCC
ATGCCAACAGACCCACGGTGACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010268.1\|WP_040103050.1\|4050831_4051716_+\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|236238
NZ_CP010268.1\|WP_013372645.1\|4068214_4068604_-\|TIGR04086-family-membrane-protein	unknown	unknown	gnl\|CDD\|274969
NZ_CP010268.1\|WP_025675036.1\|4061533_4062148_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP010268.1\|WP_025678438.1\|4049914_4050814_+\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
NZ_CP010268.1\|WP_013372642.1\|4071473_4071731_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379375
NZ_CP010268.1\|WP_013372653.1\|4060106_4060808_+\|bypass-of-forespore-protein-c-(forespore-regulator-of-the-sigma--k-checkpoint)	unknown	unknown	gnl\|CDD\|370208
NZ_CP010268.1\|WP_040103054.1\|4069593_4071165_-\|stage-V-sporulation-protein-B	unknown	unknown	gnl\|CDD\|240529
NZ_CP010268.1\|WP_040103053.1\|4067811_4068147_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|376903
NZ_CP010268.1\|WP_040103051.1\|4051875_4053519_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_CP010268.1\|WP_013372657.1\|4048949_4049918_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP010268.1\|WP_040103052.1\|4063486_4065580_+\|SpoIID/LytB-domain-containing-protein	unknown	unknown	gnl\|CDD\|274252
NZ_CP010268.1\|WP_013372647.1\|4066636_4067776_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP010268.1\|WP_025675038.1\|4061033_4061537_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NZ_CP010268.1\|WP_013372641.1\|4071821_4073078_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|237276
NZ_CP010268.1\|WP_013372640.1\|4073067_4073982_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237276
NZ_CP010268.1\|WP_013372659.1\|4047154_4047592_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|179848
NZ_CP010268.1\|WP_013372644.1\|4068810_4069587_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP010268.1\|WP_025678440.1\|4045686_4046997_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237046
NZ_CP010268.1\|WP_013372648.1\|4065587_4066616_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP010268.1\|WP_013372658.1\|4047635_4048922_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783

Protein	Function_ID	Function_description	E-value
NZ_CP010268.1\|WP_040103050.1\|4050831_4051716_+\|branched-chain-amino-acid-transaminase	gnl\|CDD\|236238	PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed.	0
NZ_CP010268.1\|WP_013372645.1\|4068214_4068604_-\|TIGR04086-family-membrane-protein	gnl\|CDD\|274969	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family. Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. The function is unknown.	1.99238e-19
NZ_CP010268.1\|WP_025675036.1\|4061533_4062148_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	3.83565e-80
NZ_CP010268.1\|WP_025678438.1\|4049914_4050814_+\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	6.81628e-111
NZ_CP010268.1\|WP_013372642.1\|4071473_4071731_+\|hypothetical-protein	gnl\|CDD\|379375	pfam13797, Post_transc_reg, Post-transcriptional regulator. This family includes post-transcriptional regulators.	3.96751e-16
NZ_CP010268.1\|WP_013372653.1\|4060106_4060808_+\|bypass-of-forespore-protein-c-(forespore-regulator-of-the-sigma--k-checkpoint)	gnl\|CDD\|370208	pfam08955, BofC_C, BofC C-terminal domain. The C-terminal domain of the bacterial protein 'bypass of forespore C' contains a three-stranded beta-sheet and three alpha-helices. Its exact function is, as yet, unknown.	2.23794e-34
NZ_CP010268.1\|WP_040103054.1\|4069593_4071165_-\|stage-V-sporulation-protein-B	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	4.36514e-127
NZ_CP010268.1\|WP_040103053.1\|4067811_4068147_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|376903	pfam02699, YajC, Preprotein translocase subunit. See.	9.83342e-37
NZ_CP010268.1\|WP_040103051.1\|4051875_4053519_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	9.85834e-13
NZ_CP010268.1\|WP_013372657.1\|4048949_4049918_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	5.21744e-120
NZ_CP010268.1\|WP_040103052.1\|4063486_4065580_+\|SpoIID/LytB-domain-containing-protein	gnl\|CDD\|274252	TIGR02669, stage_II_sporulation_protein_D, SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General].	4.57028e-41
NZ_CP010268.1\|WP_013372647.1\|4066636_4067776_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP010268.1\|WP_025675038.1\|4061033_4061537_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	1.17074e-88
NZ_CP010268.1\|WP_013372641.1\|4071821_4073078_+\|protein-translocase-subunit-SecD	gnl\|CDD\|237276	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed.	9.97983e-141
NZ_CP010268.1\|WP_013372640.1\|4073067_4073982_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237276	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed.	1.15891e-107
NZ_CP010268.1\|WP_013372659.1\|4047154_4047592_+\|ACT-domain-containing-protein	gnl\|CDD\|179848	PRK04435, PRK04435, ACT domain-containing protein.	8.40985e-72
NZ_CP010268.1\|WP_013372644.1\|4068810_4069587_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	3.17112e-62
NZ_CP010268.1\|WP_025678440.1\|4045686_4046997_+\|GTPase-ObgE	gnl\|CDD\|237046	PRK12297, obgE, GTPase CgtA; Reviewed.	0
NZ_CP010268.1\|WP_013372648.1\|4065587_4066616_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP010268.1\|WP_013372658.1\|4047635_4048922_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0

>NZ_CP010268.1|WP_025675036.1|4061533_4062148_+|Holliday-junction-branch-migration-protein-RuvA
MIDFLRGSVAHLENEYVVLDVQGVGYRVFCPNPYAFAKTEGPVVIYTHHHVREDAILLFGFATREEQQLFRKLIDVSGIGPRVALGILGGGTPAHVVTAIYQENITFLTKLPGIGKKTAQRMILDLKDKLDGIGALGMATGLFAEPAVEEGEGSYWSEAREALKALGYTDAELDKVWSKMKKDAKPDDSADILMKRALQLLFAG
>NZ_CP010268.1|WP_025675038.1|4061033_4061537_+|crossover-junction-endodeoxyribonuclease-RuvC
MRFLGIDPGIAIVGFGFVDKIGSKVVPVQYGCIQTEAHTPEEDRLLHVYEGMLQLIDKYKPDAVALEKLFFNRNVTTAMSVSQARGVLVLAAKQRNLPIGEYTPMQVKQAIVGYGKAEKKQVQEMVRMFLKLQAVPKPDDVADALAVAICHAHSYGLNSKLNEVLRK
>NZ_CP010268.1|WP_013372653.1|4060106_4060808_+|bypass-of-forespore-protein-c-(forespore-regulator-of-the-sigma--k-checkpoint)
MKRLSWKKQMKRRWKQWRRTVWACTILGAACLLAGLGILFSNHMQAMLSQPLATPVMAEMEEESPNYTSTEDRSSQMQLLQSIHASGISRKTRLLTTYVCGTETTSLGTLSSQQLESLLKQHPDWKGRLNTKGEVWLERRVEDLSESCKERAYMGLSTDGQLTLFEGLPKKEKVIRTFFQLDIGSMETALPEGVYKQLQQGIRVQDINEYNSVISTFSDFAVERTQRVLKQHY
>NZ_CP010268.1|WP_040103051.1|4051875_4053519_+|LysM-peptidoglycan-binding-domain-containing-protein
MKIHIVKKGDTLYLLAQKYNVTLEKVIAANPQLADPNQLSIGEKIKIPTDPVTMETQPSTVYQHKVKQGDTLWKLSKAWNVPLKLIIDANSQLKNPNALLVGETVNIPHYKESVSDLSVNKKNTAVKEEMTQPKPESPTKEELTQPKAELTQPKPENMPSPKEEMTQPKETVNPPKLPELKLPEVPMAPVNMAPVNMAPVNPAPPQLQPIITQPAPPQQMQPIVTQPIAPKPQLPVHIEKQPVTEKFCGCTSSKPMENSSWPLQQPAFDYSPPINAMPNSWYPGIGSPQNWGNAPVNTSFAEHASPTVVADQGYHHDCEHPWCWGPVQTAPIHAHPTPYPAYSDCCCTPGYYPSHEASENTSYPVYPPFIHQGGPQKQPESAVQGSQWGNAWGGPQYSMPASGYVSDFSQPIGQHSANHPYHPFAHGNAPMYPLEGYTTPYMFMPDCGCREGNTESAPASPGTQEVGNNLTIPSQNEVASSSKKDDSARKGKSKDISSSTSKEETSKAKVSSEHDTIKKHKSRKSTGGRSRSSSYSARARQNPWIND
>NZ_CP010268.1|WP_040103050.1|4050831_4051716_+|branched-chain-amino-acid-transaminase
MAEQWIYLDGQHVTKENAKVSVYDHGFLYGDGIFEGIRIYNGNIFKCKEHLERLYDSAKSIQLNIPLSPDEMLEAMAETIRLNEMRNGYIRLVVSRGAGNLGLDPLRCAKASVIIIVEQLTIYPEEAYLTGLKTISVSQRRNIPDALNPKIKSLNYLNNILVKIQSNYAGVGEAIMLNSQGYVTEGSADNIFIVKNGVLYTPPCYLGALEGITRNAIIDLCAKLGYSLKEQPFTLHDVYVADEVFFTGTAAEVIAAYEVDGRTIGSGVAGPVTLELLAEFRKIVDQDGYKVWQD
>NZ_CP010268.1|WP_025678438.1|4049914_4050814_+|prephenate-dehydratase
MMRIALLPEGTVSHEAIKYLLGDTPCELLFYKHIADVFQAIDKGQADYSVIPIENTIDGSVSLHMDWLVHEVDIPMQAEWVYPSIQNLIGHRSEFLGDQDKLDLSKVVKIMSHPVALPQCKEFIQTFAPQAELESAGSTAEAVEIVKHNQGKGWTALGTKLAAIKHGLDILASKVTDHDNNFTRFVLIGHQPVRFPRTPEGQRTSILVTPPQDFPGALHQVLSAFAWRRLNLSRIESRPTKKQLGNYYFYIEVLESLHSVLLPAAFAEIEALGCHVRILGSYPSYKYVEAAIEPILKEH
>NZ_CP010268.1|WP_013372657.1|4048949_4049918_+|homoserine-kinase
MTVLKTARVRVPASTANLGPGFDTLGMALSLYAWIELKEAEQTAFHLYGDQMNGVPQDKTNLIYKVAQMVFREAGVSVPELEISMYSDIPLTRGLGSSASAIVGALVAANTLIGSPLSDSKLFDMASAIEKHPDNVGASLFGGIITAVWDGKHAKHLRIEPDANLEVMVVIPDFQLSTSKAREVLPTHVSLKDAVYNISHASMLVAALASGRTDLIAEAMRDQLHQPYRAALVPGMTEILQNAYHYGALGVALSGAGPTLLALTDQRENRKAELEQYLTETMNKEGITASVLNLRPEIEGAKVYTEGNTHPFMDMIKGELTI
>NZ_CP010268.1|WP_013372658.1|4047635_4048922_+|homoserine-dehydrogenase
MKPVKVGLLGLGTVGTGVVRIVEGNQEDLSRQVGSPIIIEKIAVKNIDKYRSIEVDTAKLTEDPWEVIRDPEIDVIIEVMGGIDQTKEYILEALERGKHIVTANKDLMALHGSEVLAKAQEKQCDIFYEASVAGGIPIIRTLIEGFSSDRITRIMGIVNGTTNFILTKMSQEGASYEEVLREAQELGYAESDPTSDVEGLDAARKMAILGTLGFRSNVELKDVSVSGISKVTSEDIAFAKKLGYQMKLLGIAERQGDEFTINVQPTMVRKQHPLASVNGVFNAVYVHGEAVGETMFYGAGAGEMPTATSVVADLVAVVKNLKLGVNGLKAIVPYNPKKICNDEDVYFKNFVLLHVDDKAGVLAQITQVFAEFNVSLASVVQQPNETNPDAEIIIVTHLASKASMKKVLEHFETLDVIRRIKSVYRVEG
>NZ_CP010268.1|WP_013372659.1|4047154_4047592_+|ACT-domain-containing-protein
MKERYYLVREDILPEAIVKTIQVKLLLASGDVKTVHDAVEQVGLSRSAFYKYKDGIHLVNQLERERIVNISIDLEHQSGMLSRVLGRVADYGGNVLTIQQSIPLQGRANVVISVEMSRLSDELGVLLEGLESISGVKRVRLIGQG
>NZ_CP010268.1|WP_025678440.1|4045686_4046997_+|GTPase-ObgE
MFVDKAKIFVKGGDGGDGLIAFRREKYVPNGGPAGGDGGNGGDVIFRVDEGLRTLMDFRYQRHFKAQRGVKGRNKSQHGANAEHMIVRIPPGTVIMDDDTGEVLADMTRHGQQVVVAKGGRGGRGNIRFATPSNPAPELAENGAEGQERYITLELKVMADVGLVGFPSVGKSTLLSVVSSAKPKIGAYHFTTITPNLGVVDVGDQRNFVMADLPGLIEGAHEGTGLGHEFLRHIERTRIIIHVVDMAGSEGRDPFEDWTKINDELKQYNAALAERPQIVAANKMDMPEAEENLAHFKEQIATIRPDLEIMPISSLTRQGVKELLYRAADLLDQIPDEPVVEEVAEVNERKVFKLDTTEDEGFTIVRENDTFVVHSPKIERMMKRMQMNSHDAILKLARTLRHMGVDAELRKRGATDGTSVRIADFEFEFVEGSSYY
>NZ_CP010268.1|WP_040103052.1|4063486_4065580_+|SpoIID/LytB-domain-containing-protein
MSGDTLNRNKNFGAWTGRLKRAALIMVLATACIPWPSAVQAAASQEDIRVVIFADLGSKYKATVPAVTLKSSGSLSVGQNSGGSFQAWMGLPDSTARFSVDSYRVKVLEGNEAAAIKAAQALQKTNDKPTVFIGSKNGGSVYQVYAGLYASEQSAQAAVQRISSATGAQAEVKGNKHWSTGSYGSEQEANLVRTTIAAAGFDAFTVIQSRGQYAVWVGEESNDSKLSALKTELESKQPRLTLSKVNTTQTGLILRQEAGVTTGSQVMPHYMLSGSNNSKIIVNGGNNGIQVVERSQRTYRGDMEIGITSGQLALVNEVPLEQYLYSVVGAEVYSSWPAEALKAQAVAARSYALAQGNRFQIGNVVDGTLSQAYNGKSSEHANVNEAVDATAGEVIKSGGKVVEAVFSSNAGGVTADASEVWNSGGEAFASVDSSGDTSAQKGAQEWYHVLLSNGKTGYIREDNAKELEGVTEAGLDKITVTAENTNVRPIPQIQSTVTPVAKAQPGEEMIVLEKVPQSGDYAWVRGPFTAAQIAKSLQGKITGTVPSSVNHLDVTKRGPSGRVLEVEADGTPLKVKYPDMYRSAMGGLPSTLFDIASTGSYTVLGADEATTHVSGTQGTQILSASGSSTLSGNGVVVMNEDRHARVIDKTQSFIFTGKGNGHGLGLSQWGANGLAEQGYDYKKILQHYYKNVDIVKD
>NZ_CP010268.1|WP_013372648.1|4065587_4066616_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MNVNDYDFELPETLIAQTPLLERTASRLLTLNKNNGEVGHHTFSDIVQYLQPGDTLVLNDTRVIPARLFGIKQDTGAKAEVLLLKQLEGDRWEALVKPGKKLKKGAVIVFGDELKAVIEEEGDMGGRVLSFSYDGIFQEILDRLGQMPLPPYIKEQLDDRERYQTVYARHEGSAAAPTAGLHFTEELLDRIKEKGVTVAFITLHVGLGTFRPMSVDTIEEHVMHEEYYSLSQETADVLNATKARGGRVVAVGTTSCRTLETVGSNFVDGVLQASSGWTQIFIYPGYEFRVVDAMITNFHLPKSTLVMLVSALAGRKNIMHAYQEAIDQKYRFFSFGDAMFIY
>NZ_CP010268.1|WP_013372647.1|4066636_4067776_+|tRNA-guanosine(34)-transglycosylase-Tgt
MAPAIRYEHIKTCKQSGARLGRVHTPHGVIETPTFMPVGTQATVKTMSPEELKAMDAHIILSNTYHLFLRPGHDIIREAGGLHKFMNWDRPILTDSGGFQVFSLSEMRKISEEGVHFRSHLNGDKKFLSPEVAMEVQNSLGSDIMMAFDECPPFPAEYEYVKKSLERTSRWAERCLEAHARPHDQGLFAIVQGGMHEDLRKQSAADLTSMDFPGYAIGGLSVGEPKHLMYEVLDYTVPLLPTNKPRYLMGVGSPDALIEGSIRGVDMFDCVLPTRIARNGTTMTSQGRLVVRNANYASDFGPLDPACDCYTCRNYSRAYLRHLIKADETFGLRLTTYHNLHFLIQLMRNVRQAIMDDRLLDFRDEFFEQYGLHDNDKGF
>NZ_CP010268.1|WP_040103053.1|4067811_4068147_+|preprotein-translocase-subunit-YajC
MFHFATAATAPGGAGGLFQMIWPLALMFVIFYFLLIRPNQKKQKQRQSMLQALKKGDKVITIGGLHGTIVEITDDVVVLRVNDVTKLTFDRSAISNAIAKDTASEEVVSKS
>NZ_CP010268.1|WP_013372645.1|4068214_4068604_-|TIGR04086-family-membrane-protein
MELIRRWCSFRLAHPILSGLFYAFAWMLFGALILSILLWMTQMQEQDLSLYTYIVHAFAMLSGGFVAGKRSTNKGWYQGGITGILYGLIVLLVGFLALDAGMNGKDLLHLGIAFVIGAGGGMFGINFSK
>NZ_CP010268.1|WP_013372644.1|4068810_4069587_+|DUF421-domain-containing-protein
MSHDIFAHIFRTLLMYFIVYLVMRLMGKREIGKLSVFDLVISIMIAEIAVFSLEDIKRPLYEGLIPLGVLLILQIGISYFSLKSRRLRLLFDGRPSVLYSNGQLNKDEMAKQRYNLDDLLLQLREQNIESLDEVEYVILETTGKLTVIDKDFYDGAKHEKIKQEQNKNDLISKEQQENKVHPSPQIGGKFRYEGLPIPLIMDGKVLDRNLERMDMNRFWLKNQIQAKGHKDFKDVFLCSVNHRGDVYITPPAYGESLD
>NZ_CP010268.1|WP_040103054.1|4069593_4071165_-|stage-V-sporulation-protein-B
MKKQTFIHGAIILLAAGIINRLLGFIPRIALPRIIGPEGVGLYQQGYPFFIVLVTLITGGIPLAVAKLVAEAETAGQPEMSRRILHTSLRFTITLSLIAMAICLVFAPWITSHLLTDSRVYYTFVSMSPMIVIVAVSSAYRGYFQGKQNMIPSASSSIAETVMRIFCVIWFAYLLLPHGVAYAAAGAMLGALAGEFIGMVVLLWQYTWNQRKDHILQPKAPLPPKVHTDQSSVLSRLMSISVPVTAGRLVGSLSYLLESILCMRSLAVAGIATGVATAQYGAMQGMVIPVLLLPGALTSSLAVSLVPSLSEAAAKGHITAIHKRLHQSLRLALVAGAPFAVIMYVLAEPLCLLLYNNGDIAGMLKLMAPFALFMYIQAPLQAALQALDRPGSALLNTFIGAIIKIVLIVWLASQPQYGIYGAVIAICINSAIVTLLHGFSVSRLLRFRVRLLDFWKTGMGMIIMAAAVLYTYRHLTIFDQMWLQFMFAAGLGIILYLFLMTLIKMIDWDNLTRIPILRRWFKA
>NZ_CP010268.1|WP_013372642.1|4071473_4071731_+|hypothetical-protein
MGMEELDEQDWDDAIEILCQSKADELILVGYEHVTSKDVWNCVSHKYEKEGIPPLHKLVNDILSLKATSFMNYLTMSALRGSTFE
>NZ_CP010268.1|WP_013372641.1|4071821_4073078_+|protein-translocase-subunit-SecD
MKRILSFIVVVLITTGVMVGTSPGLLKSLKLGLDLKGGFEILYEAQPLEAGQRVTSQSLIQTAQSLERRINALGTTEPEVTTEGTNRIRVRLAGVSNEAEVRSMLKKPAELTFRSATAADAKKPGQYSKIELRGNDFVENGAVVGYDQLNQPEISIKVKDKAKFAEITKRLMNKELAIFLDDELLSAPTVRSELTDGSASITGSYTRDEANKLADTINLGALPLKLTEKYSQSVGATLGQLSLDQTIRAGLIGSVIILIFMIAMFRVPGLIASFCLIVHTWLVLAIFYLGGFVLTLPGIAAFVLGIGMAVDANIITYERIKEEIKSGKTIRSSVIAGSKASFRTVMDANITTIIAAAVMFGLGTGSVRGFALVLIVDIVVSILTNIFFSRFLLNLLVKADAVKKAKYFGVKESDISAL
>NZ_CP010268.1|WP_013372640.1|4073067_4073982_+|protein-translocase-subunit-SecF
MRFNWDYKYVKMSKWFYTFSIIVTLLGILSLSIFGLNYGVDFRSGSNVDVNLTKVVTQEQIQSLLDEKGIGKEVDYTPGKERFGIRFSQVLTDQQVNDFKTSFNKELDPKASFEVNTVDTEMAQELERNAIWAVLLASVAIAIYISIRFEWRFAVAAIVSLLHDAFLVISIFSIFRLEVDLTFITAILTIVGFSINDTVVIFDRIRENLRFAKKKSRADLEQVVDHSIAQTMTRSLATVFTVFIASVCLFIFGGESIRMFSLAMVIGLLFGAYSSIFIASPLWVALKGKQKTPTAGGAAKTAKS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010268_1	1.1\|1949292\|34\|NZ_CP010268\|CRISPRCasFinder	1949292-1949325	34	NZ_CP049908	Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence	241829-241862	10	0.706

1. spacer 1.1|1949292|34|NZ_CP010268|CRISPRCasFinder matches to NZ_CP049908 (Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gccgggcccaccaggacctcccggacctgtgggg	CRISPR spacer
aagcggcctaccaggacatcccggacctggcgaa	Protospacer
.   ****.******** ***********  *..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

892442 : 901844

Bacillus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040101713.1\|892442_895097_-	DNA polymerase I	A0A060AM05	Listeria_phage	1.4e-46	29.8
WP_040101714.1\|895272_895932_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_013370358.1\|895971_896730_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-14	32.4
WP_040101715.1\|896857_897982_-	CBS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.1e-08	26.9
WP_013370356.1\|898139_898871_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-37	34.5
WP_013370355.1\|898999_900802_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.6e-38	36.3
WP_016819632.1\|900923_901844_-	glucose 1-dehydrogenase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	3.4e-53	41.8

DBSCAN-SWA_2

1389734 : 1408182

Bacillus_phage(37.5%)

holin,plate,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040101928.1\|1389734_1390700_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	6.5e-55	50.6
WP_040101929.1\|1390852_1391299_-\|holin	phage holin family protein	R9TMD4	Paenibacillus_phage	8.7e-39	62.2
WP_040101930.1\|1391429_1392449_-\|tail	tail fiber protein	NA	NA	NA	NA
WP_040101931.1\|1392464_1392854_-	hypothetical protein	NA	NA	NA	NA
WP_040101932.1\|1392896_1393790_-	DUF2313 domain-containing protein	S6BFJ0	Thermus_phage	1.3e-25	44.4
WP_040101933.1\|1393782_1394934_-\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	8.3e-41	34.9
WP_016821304.1\|1394933_1395404_-	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	2.6e-25	38.6
WP_013369781.1\|1395390_1395798_-	hypothetical protein	A0A0N7ACD3	Bacillus_phage	1.7e-09	33.1
WP_040101934.1\|1395790_1396768_-	hypothetical protein	A0A0N6W8H4	Bacillus_phage	2.5e-78	47.7
WP_040101935.1\|1396764_1397406_-	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	3.8e-43	51.6
WP_040101936.1\|1397442_1399206_-	hypothetical protein	NA	NA	NA	NA
WP_007429164.1\|1399382_1399817_-	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	1.8e-20	42.0
WP_016821317.1\|1399916_1400324_-\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	1.5e-40	61.8
WP_025678600.1\|1400446_1401913_-\|portal	phage portal protein	A0A0N7AEC6	Bacillus_phage	8.0e-73	36.3
WP_013369774.1\|1401915_1402134_-	hypothetical protein	NA	NA	NA	NA
WP_040101937.1\|1402144_1403113_-	hypothetical protein	NA	NA	NA	NA
WP_040101938.1\|1403457_1404312_-	aminoglycoside 6-adenylyltransferase	E4ZFP8	Streptococcus_phage	5.9e-92	55.4
WP_013369770.1\|1404418_1404907_-	transcriptional regulator	A0A0C5AJ96	Bacteriophage	5.4e-42	62.7
WP_040101939.1\|1405183_1405657_+	helix-turn-helix domain-containing protein	S6C481	Thermus_phage	3.7e-19	39.7
WP_040101940.1\|1405668_1406094_+	ImmA/IrrE family metallo-endopeptidase	A0A0S2SXM3	Bacillus_phage	2.6e-16	36.1
WP_040101941.1\|1406289_1408182_+	LysM peptidoglycan-binding domain-containing protein	A0A2P1CFA9	Microbacterium_phage	4.9e-06	41.2

DBSCAN-SWA_3

1768126 : 1779575

Prochlorococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040102112.1\|1768126_1769671_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.4e-74	52.5
WP_040102113.1\|1769801_1770416_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.6e-22	36.4
WP_025675375.1\|1770415_1771456_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.5e-70	45.8
WP_013369475.1\|1772111_1773593_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-52	32.0
WP_040102115.1\|1773577_1775821_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-163	42.2
WP_040102116.1\|1775798_1776488_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_007428837.1\|1776492_1776738_-	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	1.4e-06	37.7
WP_040102117.1\|1776796_1777678_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	4.4e-42	34.6
WP_040102119.1\|1778276_1779575_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.0e-20	33.1

DBSCAN-SWA_4

4975248 : 4982445

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013371726.1\|4975248_4975914_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.5e-39	40.9
WP_085978642.1\|4976027_4976672_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.9e-59	56.2
WP_013371724.1\|4976702_4977167_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.4e-41	59.2
WP_040103467.1\|4977340_4978135_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.9e-08	30.5
WP_013371722.1\|4978103_4978712_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.1e-15	33.3
WP_040103468.1\|4978853_4979567_+	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_013371720.1\|4979666_4980158_+	sporulation protein YtfJ	NA	NA	NA	NA
WP_040103469.1\|4980249_4980972_-	hypothetical protein	NA	NA	NA	NA
WP_040103470.1\|4981182_4982445_+	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	2.3e-07	32.9

DBSCAN-SWA_5

5410910 : 5418700

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040103659.1\|5410910_5411816_+	NUDIX hydrolase	G3MA14	Bacillus_virus	1.4e-35	34.3
WP_013371357.1\|5411846_5412329_+	NADAR family protein	A0A0S0N9W6	Pseudomonas_phage	2.8e-43	56.1
WP_040103660.1\|5412334_5413234_+	TIGR02452 family protein	G3MBH6	Bacillus_virus	8.4e-57	45.3
WP_025678913.1\|5413283_5413886_+	adenylyl-sulfate kinase	NA	NA	NA	NA
WP_025678912.1\|5414173_5415631_+	catalase	A0A2K9L0T1	Tupanvirus	1.9e-114	43.2
WP_040103661.1\|5415751_5417062_-	MATE family efflux transporter	NA	NA	NA	NA
WP_040103662.1\|5417028_5417871_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-23	30.9
WP_040103663.1\|5417863_5418700_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.6e-17	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010268

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection