CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010311	Geoalkalibacter subterraneus strain Red1 chromosome, complete genome	3 crisprs	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6,csa3,Cas9_archaeal,DinG,RT	2	10	8	2
NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	2 crisprs	c2c9_V-U4,cas14k,Cas14u_CAS-V,cas14i,RT,Cas9_archaeal,cas14j,csf5gr6,csf1gr8,csf2gr7,csf3gr5,DinG	3	28	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010311_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010311_1

1369072-1372389

TypeI

I-C

Consensus_repeat	Method
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	PILER-CR
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CRT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	PILER-CR

50 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP010311_1

>merge|NZ_CP010311|1|1369072-1372389|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAACGCCGTGAGCAAAGCGTTTTCAATCGCGGAAGCTGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATGGGTGAACCGCAAGAGGTCGCTTATACAGACGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACCGGTCTTTACGATGTAGAGACCGGCGAGAAGGTCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATCATCAACGCAGACTTTCCGACGCTTGGTCGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACAGGAAATTGTTAATAGTGAGGAGGAGGGAGCAAGGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACAAAGTCCCACCAGCTTATGTGGCGGCTGAAATATCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACGTAGTCGGCTATCTCGTTGCCGCTTTTATCTACGGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATAAACAGGCGTCCCGACTTTGAGCGCGAACTTGAGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATCTCGCACAGCAAGGCATAATGCTCAGTCCGGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACCTCAGATGCTGTGGCAGATGGCGTGTTCCGGCCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACGTGGAAGCTGTCACAGGCCGGCATGCCGTCTCCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACACCTGGTTGACGGCCAACCAGTAATAAGGAGCCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACCAGATCAGGCGCTGACAAAGATCCCCGGCAAAGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACAGTTGATCTTTGATGGATTGCATGATTTACCCTTGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACAGCAGGTTGTAGGTTACGTCCTCATAGTTCCGACGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACGCCCATGATCTGGCTGGCTGTTTTAGTCGCGGACGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTGTCCATGGGTGTTCCTCCTTTTGGTTGTTTGTGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACGAGCATCCTATCTTTTGCTTCAAGGCAGAGGGGAAGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTTCCGAGGAGGAGGGAGCAAGTAAAGCGCGGATGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATTGATCTTTTGTTGCAATGCACTCAGAGTGCGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATCAGCCGATTTGTCATCAGAATCAGTTTGATTCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTATCTTTACAGCGTAGGTTTTTGTTGTTAAAGTGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTAAACACCTACCCTGGCCCTTATATGCCTGGACGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTCTGCTACTGGGGAACGTCGTTACCATTTTATCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACACCTTGCCTTTAGCATCCATTTACTTTTTAGGGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACCTGTTCGGTGGTAATTCTTTGCTTTATGCCTTTGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTATATAATAAATAAGCAATTCGCGTGCCAAAAATGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACGCTATTTGCTCCGCTGTTAGCATGGCCTCTTAGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATAGCAAGGGGGCTGTGAAACATTCGGGATGGCCTGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACAAACACCTACCCTTACAAGGCTATGCCTTGCCTATGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTTCTATAAATTAAATCGTAAAGACTCTCCCAAAGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACCCTGTTGTGTAGGGTATATGCCTCGATGCTCTGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACACACAAGTCGCCAAAAACCCATCCCCTTAAATCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACAAAAGCACCAGCCAGAAGGGCGTGCAAAGTAATTCTGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTCGTTATCGCTCTGTTTATCAGCTCTGGCATGATGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACCGATACGACTCAAACCACTTATGACGGTCCGGCCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATAGTAAAATAGATGAAATCAAACATCGTCCTTGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTGTTTGGCGGGAACACTTTGCTTTATGCTTTTGGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATCAAGCGCAGCCGCAAATATCTCGGCCACAAAGGGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTGCCGCTTGCTTAAAAACAACGTCGTCGGCCACGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTATAAACAACCGTTCTTTCTTCGTTTTTGCTGTCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACGCCCGACAAAACACCCTCGATGAACAGCTCGAACGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACTCTAAGCCGTTGTTTGGGTAGTCGTTGCGCAGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACCTGCTCGAGGTTGACGGTGGGGGCTGCGGGCTGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATCTCGTTTATGATCTGCTCGGCTGAGGCGAGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACATTATCATCTGCACCAACGCCGTTGACGAAGCCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACGTCCACGACCACAAACCCTTTCAAGGAAAAGGGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACACCCAGTTCGAGACCAGCTTGACCGATCTCGGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACGCCGATATCGCGAAAGACCGGCGCGAGGTTGCGTCGCCCCCCGTGCGGGGGCGTGGATTGAAACCCCGCAACCAGGTCGAAATCGAGCTCGCCGAACGTCGCCCCCCGTGCGGGGGCGTGGATGGCTAC

>NZ_CP010311|1|1|1369072-1370023|PILER-CR
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCGTGAGCAAAGCGTTTTCAATCGCGGAAGCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATGGGTGAACCGCAAGAGGTCGCTTATACAGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CGGTCTTTACGATGTAGAGACCGGCGAGAAGGTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCATCAACGCAGACTTTCCGACGCTTGGTCGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGGAAATTGTTAATAGTGAGGAGGAGGGAGCAAG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAAGTCCCACCAGCTTATGTGGCGGCTGAAATATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTAGTCGGCTATCTCGTTGCCGCTTTTATCTACG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAAACAGGCGTCCCGACTTTGAGCGCGAACTTGA
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCTCGCACAGCAAGGCATAATGCTCAGTCCGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTCAGATGCTGTGGCAGATGGCGTGTTCCGGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTGGAAGCTGTCACAGGCCGGCATGCCGTCTCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCTGGTTGACGGCCAACCAGTAATAAGGAGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CAGATCAGGCGCTGACAAAGATCCCCGGCAAAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGTTGATCTTTGATGGATTGCATGATTTACCCTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAACAGCAGGTTGTAGGTTACGTCCTCATAGTTCCGACGTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCCATGATCTGGCTGGCTGTTTTAGTCGCGGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGTCCATGGGTGTTCCTCCTTTTGGTTGTTTGT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GAGCATCCTATCTTTTGCTTCAAGGCAGAGGGGAA
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TTCCGAGGAGGAGGGAGCAAGTAAAGCGCGGAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATTGATCTTTTGTTGCAATGCACTCAGAGTGCGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCAGCCGATTTGTCATCAGAATCAGTTTGATTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATCTTTACAGCGTAGGTTTTTGTTGTTAAAGT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TAAACACCTACCCTGGCCCTTATATGCCTGGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCTGCTACTGGGGAACGTCGTTACCATTTTATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCTTGCCTTTAGCATCCATTTACTTTTTAGGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTGTTCGGTGGTAATTCTTTGCTTTATGCCTTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATATAATAAATAAGCAATTCGCGTGCCAAAAAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCTATTTGCTCCGCTGTTAGCATGGCCTCTTAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAGCAAGGGGGCTGTGAAACATTCGGGATGGCCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAACACCTACCCTTACAAGGCTATGCCTTGCCTAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TTCTATAAATTAAATCGTAAAGACTCTCCCAAAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CCTGTTGTGTAGGGTATATGCCTCGATGCTCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACACAAGTCGCCAAAAACCCATCCCCTTAAATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAAAGCACCAGCCAGAAGGGCGTGCAAAGTAATTCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCGTTATCGCTCTGTTTATCAGCTCTGGCATGAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CGATACGACTCAAACCACTTATGACGGTCCGGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAGTAAAATAGATGAAATCAAACATCGTCCTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGTTTGGCGGGAACACTTTGCTTTATGCTTTTG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCAAGCGCAGCCGCAAATATCTCGGCCACAAAGG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGCCGCTTGCTTAAAAACAACGTCGTCGGCCACGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATAAACAACCGTTCTTTCTTCGTTTTTGCTGTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCCGACAAAACACCCTCGATGAACAGCTCGAAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCTAAGCCGTTGTTTGGGTAGTCGTTGCGCAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTGCTCGAGGTTGACGGTGGGGGCTGCGGGCTGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCTCGTTTATGATCTGCTCGGCTGAGGCGAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATTATCATCTGCACCAACGCCGTTGACGAAGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTCCACGACCACAAACCCTTTCAAGGAAAAGGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCCAGTTCGAGACCAGCTTGACCGATCTCGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCGATATCGCGAAAGACCGGCGCGAGGTTGC


>NZ_CP010311|1|1|1369072-1372389|CRISPRCasFinder
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCGTGAGCAAAGCGTTTTCAATCGCGGAAGCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATGGGTGAACCGCAAGAGGTCGCTTATACAGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CGGTCTTTACGATGTAGAGACCGGCGAGAAGGTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCATCAACGCAGACTTTCCGACGCTTGGTCGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGGAAATTGTTAATAGTGAGGAGGAGGGAGCAAG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAAGTCCCACCAGCTTATGTGGCGGCTGAAATATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTAGTCGGCTATCTCGTTGCCGCTTTTATCTACG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAAACAGGCGTCCCGACTTTGAGCGCGAACTTGA
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCTCGCACAGCAAGGCATAATGCTCAGTCCGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTCAGATGCTGTGGCAGATGGCGTGTTCCGGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTGGAAGCTGTCACAGGCCGGCATGCCGTCTCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCTGGTTGACGGCCAACCAGTAATAAGGAGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CAGATCAGGCGCTGACAAAGATCCCCGGCAAAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGTTGATCTTTGATGGATTGCATGATTTACCCTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGCAGGTTGTAGGTTACGTCCTCATAGTTCCGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCCATGATCTGGCTGGCTGTTTTAGTCGCGGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGTCCATGGGTGTTCCTCCTTTTGGTTGTTTGT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GAGCATCCTATCTTTTGCTTCAAGGCAGAGGGGAA
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TTCCGAGGAGGAGGGAGCAAGTAAAGCGCGGAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATTGATCTTTTGTTGCAATGCACTCAGAGTGCGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCAGCCGATTTGTCATCAGAATCAGTTTGATTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATCTTTACAGCGTAGGTTTTTGTTGTTAAAGT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TAAACACCTACCCTGGCCCTTATATGCCTGGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCTGCTACTGGGGAACGTCGTTACCATTTTATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCTTGCCTTTAGCATCCATTTACTTTTTAGGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTGTTCGGTGGTAATTCTTTGCTTTATGCCTTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATATAATAAATAAGCAATTCGCGTGCCAAAAAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCTATTTGCTCCGCTGTTAGCATGGCCTCTTAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAGCAAGGGGGCTGTGAAACATTCGGGATGGCCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAACACCTACCCTTACAAGGCTATGCCTTGCCTAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TTCTATAAATTAAATCGTAAAGACTCTCCCAAAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CCTGTTGTGTAGGGTATATGCCTCGATGCTCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACACAAGTCGCCAAAAACCCATCCCCTTAAATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAAAGCACCAGCCAGAAGGGCGTGCAAAGTAATTCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCGTTATCGCTCTGTTTATCAGCTCTGGCATGAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CGATACGACTCAAACCACTTATGACGGTCCGGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAGTAAAATAGATGAAATCAAACATCGTCCTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGTTTGGCGGGAACACTTTGCTTTATGCTTTTG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCAAGCGCAGCCGCAAATATCTCGGCCACAAAGG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGCCGCTTGCTTAAAAACAACGTCGTCGGCCACGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATAAACAACCGTTCTTTCTTCGTTTTTGCTGTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCCGACAAAACACCCTCGATGAACAGCTCGAAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCTAAGCCGTTGTTTGGGTAGTCGTTGCGCAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTGCTCGAGGTTGACGGTGGGGGCTGCGGGCTGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCTCGTTTATGATCTGCTCGGCTGAGGCGAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATTATCATCTGCACCAACGCCGTTGACGAAGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTCCACGACCACAAACCCTTTCAAGGAAAAGGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCCAGTTCGAGACCAGCTTGACCGATCTCGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCGATATCGCGAAAGACCGGCGCGAGGTTGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CCCGCAACCAGGTCGAAATCGAGCTCGCCGAAC
GTCGCCCCCCGTGCGGGGGCGTGGATGGCTAC

>NZ_CP010311|1|1|1369072-1372389|CRT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCGTGAGCAAAGCGTTTTCAATCGCGGAAGCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATGGGTGAACCGCAAGAGGTCGCTTATACAGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CGGTCTTTACGATGTAGAGACCGGCGAGAAGGTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCATCAACGCAGACTTTCCGACGCTTGGTCGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGGAAATTGTTAATAGTGAGGAGGAGGGAGCAAG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAAGTCCCACCAGCTTATGTGGCGGCTGAAATATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTAGTCGGCTATCTCGTTGCCGCTTTTATCTACG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAAACAGGCGTCCCGACTTTGAGCGCGAACTTGA
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCTCGCACAGCAAGGCATAATGCTCAGTCCGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTCAGATGCTGTGGCAGATGGCGTGTTCCGGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTGGAAGCTGTCACAGGCCGGCATGCCGTCTCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCTGGTTGACGGCCAACCAGTAATAAGGAGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CAGATCAGGCGCTGACAAAGATCCCCGGCAAAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGTTGATCTTTGATGGATTGCATGATTTACCCTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGCAGGTTGTAGGTTACGTCCTCATAGTTCCGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCCATGATCTGGCTGGCTGTTTTAGTCGCGGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGTCCATGGGTGTTCCTCCTTTTGGTTGTTTGT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GAGCATCCTATCTTTTGCTTCAAGGCAGAGGGGAA
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TTCCGAGGAGGAGGGAGCAAGTAAAGCGCGGAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATTGATCTTTTGTTGCAATGCACTCAGAGTGCGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCAGCCGATTTGTCATCAGAATCAGTTTGATTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATCTTTACAGCGTAGGTTTTTGTTGTTAAAGT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TAAACACCTACCCTGGCCCTTATATGCCTGGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCTGCTACTGGGGAACGTCGTTACCATTTTATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCTTGCCTTTAGCATCCATTTACTTTTTAGGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTGTTCGGTGGTAATTCTTTGCTTTATGCCTTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATATAATAAATAAGCAATTCGCGTGCCAAAAAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCTATTTGCTCCGCTGTTAGCATGGCCTCTTAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAGCAAGGGGGCTGTGAAACATTCGGGATGGCCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAACACCTACCCTTACAAGGCTATGCCTTGCCTAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TTCTATAAATTAAATCGTAAAGACTCTCCCAAAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CCTGTTGTGTAGGGTATATGCCTCGATGCTCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACACAAGTCGCCAAAAACCCATCCCCTTAAATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAAAGCACCAGCCAGAAGGGCGTGCAAAGTAATTCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCGTTATCGCTCTGTTTATCAGCTCTGGCATGAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CGATACGACTCAAACCACTTATGACGGTCCGGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAGTAAAATAGATGAAATCAAACATCGTCCTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGTTTGGCGGGAACACTTTGCTTTATGCTTTTG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCAAGCGCAGCCGCAAATATCTCGGCCACAAAGG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGCCGCTTGCTTAAAAACAACGTCGTCGGCCACGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATAAACAACCGTTCTTTCTTCGTTTTTGCTGTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCCGACAAAACACCCTCGATGAACAGCTCGAAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCTAAGCCGTTGTTTGGGTAGTCGTTGCGCAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTGCTCGAGGTTGACGGTGGGGGCTGCGGGCTGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCTCGTTTATGATCTGCTCGGCTGAGGCGAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATTATCATCTGCACCAACGCCGTTGACGAAGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTCCACGACCACAAACCCTTTCAAGGAAAAGGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCCAGTTCGAGACCAGCTTGACCGATCTCGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCGATATCGCGAAAGACCGGCGCGAGGTTGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CCCGCAACCAGGTCGAAATCGAGCTCGCCGAAC
GTCGCCCCCCGTGCGGGGGCGTGGATGGCTAC

>NZ_CP010311|1|2|1370058-1372324|PILER-CR
	GCCGTGAGCAAAGCGTTTTCAATCGCGGAAGCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATGGGTGAACCGCAAGAGGTCGCTTATACAGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CGGTCTTTACGATGTAGAGACCGGCGAGAAGGTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCATCAACGCAGACTTTCCGACGCTTGGTCGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGGAAATTGTTAATAGTGAGGAGGAGGGAGCAAG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAAGTCCCACCAGCTTATGTGGCGGCTGAAATATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTAGTCGGCTATCTCGTTGCCGCTTTTATCTACG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAAACAGGCGTCCCGACTTTGAGCGCGAACTTGA
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCTCGCACAGCAAGGCATAATGCTCAGTCCGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTCAGATGCTGTGGCAGATGGCGTGTTCCGGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTGGAAGCTGTCACAGGCCGGCATGCCGTCTCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCTGGTTGACGGCCAACCAGTAATAAGGAGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CAGATCAGGCGCTGACAAAGATCCCCGGCAAAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AGTTGATCTTTGATGGATTGCATGATTTACCCTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAACAGCAGGTTGTAGGTTACGTCCTCATAGTTCCGACGTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCCATGATCTGGCTGGCTGTTTTAGTCGCGGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGTCCATGGGTGTTCCTCCTTTTGGTTGTTTGT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GAGCATCCTATCTTTTGCTTCAAGGCAGAGGGGAA
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TTCCGAGGAGGAGGGAGCAAGTAAAGCGCGGAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATTGATCTTTTGTTGCAATGCACTCAGAGTGCGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCAGCCGATTTGTCATCAGAATCAGTTTGATTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATCTTTACAGCGTAGGTTTTTGTTGTTAAAGT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TAAACACCTACCCTGGCCCTTATATGCCTGGAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCTGCTACTGGGGAACGTCGTTACCATTTTATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCTTGCCTTTAGCATCCATTTACTTTTTAGGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTGTTCGGTGGTAATTCTTTGCTTTATGCCTTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATATAATAAATAAGCAATTCGCGTGCCAAAAAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCTATTTGCTCCGCTGTTAGCATGGCCTCTTAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAGCAAGGGGGCTGTGAAACATTCGGGATGGCCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAACACCTACCCTTACAAGGCTATGCCTTGCCTAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TTCTATAAATTAAATCGTAAAGACTCTCCCAAAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CCTGTTGTGTAGGGTATATGCCTCGATGCTCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACACAAGTCGCCAAAAACCCATCCCCTTAAATC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	AAAAGCACCAGCCAGAAGGGCGTGCAAAGTAATTCT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCGTTATCGCTCTGTTTATCAGCTCTGGCATGAT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CGATACGACTCAAACCACTTATGACGGTCCGGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATAGTAAAATAGATGAAATCAAACATCGTCCTT
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGTTTGGCGGGAACACTTTGCTTTATGCTTTTG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCAAGCGCAGCCGCAAATATCTCGGCCACAAAGG
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TGCCGCTTGCTTAAAAACAACGTCGTCGGCCACGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TATAAACAACCGTTCTTTCTTCGTTTTTGCTGTC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCCGACAAAACACCCTCGATGAACAGCTCGAAC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	TCTAAGCCGTTGTTTGGGTAGTCGTTGCGCAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	CTGCTCGAGGTTGACGGTGGGGGCTGCGGGCTGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATCTCGTTTATGATCTGCTCGGCTGAGGCGAGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ATTATCATCTGCACCAACGCCGTTGACGAAGCC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GTCCACGACCACAAACCCTTTCAAGGAAAAGGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	ACCCAGTTCGAGACCAGCTTGACCGATCTCGGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	GCCGATATCGCGAAAGACCGGCGCGAGGTTGC
GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010311.1\|WP_040199764.1\|1366038_1366905_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP010311.1\|WP_144401963.1\|1373678_1374041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010311.1\|WP_040199775.1\|1376740_1377403_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NZ_CP010311.1\|WP_040199770.1\|1373401_1373713_+\|putative-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|226162
NZ_CP010311.1\|WP_052464646.1\|1366963_1367638_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP010311.1\|WP_040199783.1\|1380073_1380487_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP010311.1\|WP_052464648.1\|1375608_1376490_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271193
NZ_CP010311.1\|WP_040202178.1\|1357127_1358018_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP010311.1\|WP_040199759.1\|1362595_1363261_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP010311.1\|WP_040199768.1\|1373067_1373409_+\|addiction-module-protein	unknown	unknown	gnl\|CDD\|162974
NZ_CP010311.1\|WP_040199762.1\|1365012_1365873_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP010311.1\|WP_040199757.1\|1358053_1359925_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP010311.1\|WP_040199780.1\|1378371_1378542_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP010311.1\|WP_040199767.1\|1368616_1368907_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP010311.1\|WP_040199758.1\|1360372_1362565_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP010311.1\|WP_040199765.1\|1367582_1368614_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP010311.1\|WP_040199761.1\|1363257_1365009_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP010311.1\|WP_040199773.1\|1374512_1375616_-\|transposase	unknown	unknown	gnl\|CDD\|377437
NZ_CP010311.1\|WP_040199785.1\|1380895_1382347_-\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|273267
NZ_CP010311.1\|WP_040199782.1\|1378773_1380021_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|272992

Protein	Function_ID	Function_description	E-value
NZ_CP010311.1\|WP_040199764.1\|1366038_1366905_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	2.33967e-07
NZ_CP010311.1\|WP_040199775.1\|1376740_1377403_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	9.21038e-05
NZ_CP010311.1\|WP_040199770.1\|1373401_1373713_+\|putative-addiction-module-antidote-protein	gnl\|CDD\|226162	COG3636, COG3636, Predicted transcriptional regulator [Transcription].	4.9889e-25
NZ_CP010311.1\|WP_052464646.1\|1366963_1367638_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.26229e-39
NZ_CP010311.1\|WP_040199783.1\|1380073_1380487_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	1.26405e-65
NZ_CP010311.1\|WP_052464648.1\|1375608_1376490_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271193	cd01193, INT_IntI_C, Integron integrase and similar protiens, C-terminal catalytic domain. Integron integrases mediate site-specific DNA recombination between a proximal primary site (attI) and a secondary target site (attC) found within mobile gene cassettes encoding resistance or virulence factors. Unlike other site specific recombinases, the attC sites lack sequence conservation. Integron integrase exhibits broader DNA specificity by recognizing the non-conserved attC sites. The structure shows that DNA target site recognition are not dependent on canonical DNA but on the position of two flipped-out bases that interact in cis and in trans with the integrase. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas, and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.	2.01371e-70
NZ_CP010311.1\|WP_040202178.1\|1357127_1358018_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	4.10958e-91
NZ_CP010311.1\|WP_040199759.1\|1362595_1363261_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.89074e-119
NZ_CP010311.1\|WP_040199768.1\|1373067_1373409_+\|addiction-module-protein	gnl\|CDD\|162974	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	2.20132e-38
NZ_CP010311.1\|WP_040199762.1\|1365012_1365873_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.85156e-158
NZ_CP010311.1\|WP_040199757.1\|1358053_1359925_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP010311.1\|WP_040199780.1\|1378371_1378542_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	9.80603e-06
NZ_CP010311.1\|WP_040199767.1\|1368616_1368907_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.03316e-30
NZ_CP010311.1\|WP_040199758.1\|1360372_1362565_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.79098e-57
NZ_CP010311.1\|WP_040199765.1\|1367582_1368614_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP010311.1\|WP_040199761.1\|1363257_1365009_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NZ_CP010311.1\|WP_040199773.1\|1374512_1375616_-\|transposase	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	2.68111e-61
NZ_CP010311.1\|WP_040199785.1\|1380895_1382347_-\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|273267	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter. The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. [Transport and binding proteins, Anions, Transport and binding proteins, Cations and iron carrying compounds].	3.81076e-61
NZ_CP010311.1\|WP_040199782.1\|1378773_1380021_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|272992	TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity].	7.09196e-146

>NZ_CP010311.1|WP_040199767.1|1368616_1368907_+|CRISPR-associated-endonuclease-Cas2
MMVLVSYDVATTDSAGAKRLRKVARICTNHGQRVQYSVFECIVDPAQWVVLRQQLIRAIDDAQDSLRFYFLGANWRKRVEHIGAKVAIDQEGPLIL
>NZ_CP010311.1|WP_040199765.1|1367582_1368614_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKMLNTLYVTTQGAYLNKEGETVVVNIERETRLRLPIHTLSSIVCFGQVTCSPFLLGHCAENGVAVSFMTGYGRFLARVQGPVAGNVLLRRQQYRQADDLAASARLARMFVLGKILNCRTVMARAMRDHGGKVNADGIDKTLQVFSRVSRGLVNETALDNIRGIEGQAANDYFGHFNDLIVAQKADFVFAGRNRRPPLDRVNCLLSFLYSLLYHDARSALETVGLDPAVGFLHRDRPGRLSLALDLMEEFRPVLADRLALSLINLGQARKKGFRVLESGAVVMDDETRKTLLTEYQKRKQVEIEHPFLKEKLPLGMLMFAQAQLLSRYLRGDLDEYPPYLWR
>NZ_CP010311.1|WP_052464646.1|1366963_1367638_+|CRISPR-associated-protein-Cas4
MYAEADYVMLSALQHYQYCPRQCALIHIEQIWAENLHTAEGRILHERADSREKGAKGCVRTVRTLPIRSARLGLSGQADVVEFHEDGKVFPVEYKRGRPKANRCDEVQLCAQALCLEEMLGVAIMEGALFYGRNKRRHAVFFDGQLRHLAEETVSQVHELFRTGVTPKAEYAKKCDQCSLMSACLPKSCTDARSVRKYLAGMLRGIDEKDAQHPVCDDSGRLSE
>NZ_CP010311.1|WP_040199764.1|1366038_1366905_+|HEAT-repeat-domain-containing-protein
MDQKLEKHFRERAVVLGNSGDSAALPELIDLTRSPAANVRRLAASAIGKLAGLAEAKVAVAALQPLLQDGSPQVRQYAAKALSAYGAEAKCALADLRDMAISPVEKEYNNNGAKLAIEIIEEASRIVERQAVHCCRRCGVKLEADEYTRSHKAFQRPFCNYCFDEVFLERRNFETKVQLQKNIRAKDGTWVQSDGERLICEVLHAERIRYRYDERFRILDGYAIRPDFYLPEFDVYIEYWGMDTADYKIGMLKKQQLYQQQGKRLVSLYPEDKPRMRDALLDKLGKYQ
>NZ_CP010311.1|WP_040199762.1|1365012_1365873_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTAIANRYEFVLLFDVQNGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALARDGAEGYNIYVQEKAVLNQTNQLAYKAFDLKAETKKLPKKLEDAQKVTGWMCANFFDIRSFGAVMTTEVNCGQVRGPVQLAFAKSVEPIVPQEISITRMAVTNEKDLEKERTMGRKHIVPYGLYVAQGFVSAPLAQKTGFSEDDLELLWDALINMFEHDRSAARGVMSSRKLFVFKHRDKLGNAPAHKLFDLIRVERAAGSQGPARSFTDFDVTVGAAPTGVEILKPL
>NZ_CP010311.1|WP_040199761.1|1363257_1365009_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALNSYYERMASEPDSEMPPLGTSIEGISFALVLGEDGSLKDVEDLREQDGRNLRARKMPVPAAVTRTSGVKPNFLWDKSSYVFGSDGEGATEKNRERFAAFKGFLRQVGAAVDDPGLSAVFRFLDAWHCDEAQTTISRFVPWEEAANANFVFRLDGAPGFIHNRPPVQKAWIKYNQEKEAGELVQCLISGEADTPLARVHTPIKGVRGGQTSGGYIVSFNKPAFVSYGQDKASVAESSAFAYTTALNALLAGKSRRKVHIGDTTLVFWAQRASPAEDFLADLIEPSTENKDTTESLDDPQTAGKIHGLLHAIREGRRAVDILPDLDESVQFYILGLAPNAARLSVRFWEANNLGALLERIGRHFQQLRLVRQFDSEPEFAPLWRLLCQTAAQGKSENVSPVLAGGMTKAMLTGGPYPHSLLPVVLDRIRAEHGVTYFRAALLKAFLMRNHHMEVPVSLDLEKKDLPYLLGRLFAVLEKSQEEAVPGAGATIKDRYLASASATPGLVFHVLLKSAANHVAKLRKDPERRGRAFHFDSLTQDILAEIADFPKTLAAVEQGQFMIGYYHQRKDFFTKKNQEG
>NZ_CP010311.1|WP_040199759.1|1362595_1363261_+|type-I-C-CRISPR-associated-protein-Cas5
MAYGVKLKVWGDYACFTRPEMKVERVSYDVMTPSAARGILEAIHWKPAIRWVVDRIHVLRPIKFDNVRRNEVSSKIPKPNPATAMREGKRLYFLVDDGDNRQQRASTLLRDVEYVVEAHFELTDKAGPDDNEGKHLAIFNRRAANGQFFHQPCLGCREFPAYFELLDGEVPPSPYVGKSRDLGYMLLDLDFTDNMTPLFFRAVMEDGIISTPAPGSTEVRT
>NZ_CP010311.1|WP_040199758.1|1360372_1362565_+|CRISPR-associated-helicase/endonuclease-Cas3
MHHYYAHSSDNPDKSEWQKLPDHLNNTAALAERFAAVFSAGQWGRLAGLLHDAGKATPRFTARLEGNSARVDHSTFGAQLARDRLGRLGVLLSYVVAGHHGGLPDGGGQEGKLHFRLKHAKMPPDVELLPDVDLRGDLLPPFKLPAERKAFSLAFFTRMIFSCLVDADFLDTEAFCAPEKARQRAPEADGDLFKHLQRSLAEFLADKARTAVPTPVNDLRRAILSQCRQKAGQPQGFFSLTVPTGGGKTFSSLAFALDHAVVHGLRRVIYAIPFTSIIEQNAREFKAALGSDYVLEHHCNYKESDDPEESAYNRRRGLASENWDAPLVVTTNVQFFESLFSNKSSRCRKLHNIAGSVIVLDEAQAIPTDYLEPCLAALRELVERYGCSVVLCTATQPALDDGSLRMALPRVQEIVDDPQGLYQNLRRTQVHLIGKVSDKDLAARVDAERQVLCIVSTKKQARTLFEKVRQSGEEGTFHLSTNMYPIHRRRILEEIRTRLREKKACRLVATSLVEAGVDLDFPVVYRAMAGLDSIAQAAGRCNREGRLPEKGKVFVFEAENPPRMPWIRRCASRAAETLRALPEADPLGLEAMHRYFELLYDVEDPDKKQIMDLLNPKQLTGELILPFREAAQAFRFIEEDTVGVIVALDAEARELVHELRHTPYPRATLRKLQQYTVAVRSREFAALQGAGALEMVLRDFPLLCNDSAYSEDVGLCVDGSEVREPRELIL
>NZ_CP010311.1|WP_040199757.1|1358053_1359925_+|1-deoxy-D-xylulose-5-phosphate-synthase
MNLLEQIHSPADLRKLPKEQLPALAEEIRRFVIETVAKNGGHLSSNLGVIELTLALHRAFDTPSDRIVWDVGHQAYTHKLITGRKAKFCSLRQVDGLSGFPKRDESEYDCFDVGHASTSISAALGMACARDATGGREKVVAVIGDGSLTGGLAFEGLNQAGHLKKDFILILNDNEMSISPNVGAVSSFLSRKMTSDLFIKFKKETENFLTHLPGFGRDLLSLAKRAEDSLKGFLTPGMLFEAFGFDYIGPIDGHNLEELEETLRNVKRLNGPVLVHVLTRKGKGFAAAESDPATFHGVGPYDAQTGVVHKKAGAAPSYTSIFGETLVKMAQEDKRLVAITAAMLEGTGLKAFAERFPERFFDVGIAEQHAVTFAAGLACRGMRPVVAIYSTFLQRAYDNVLHDVCLQNLPVTFAMDRGGLVGADGPTHHGVFDYSYLRHIPNLVFMVPRDEVALQRTMATALQHDGPFAYRYPRGESEGLPQPTEITPAPIGRGEKLRDGKDGVIFAIGTMVGEALKAAEALAGEGLELAVVDAVFLKPLDRDLMLEEARRTGRVITAEENVLQGGFGSAVLELFEQEQVDSVRTLCIGLPDEFVEQGTQQQLRQRHGIDAAGMAERIRKWYA
>NZ_CP010311.1|WP_040202178.1|1357127_1358018_+|polyprenyl-synthetase-family-protein
MDLKAYLKQKAALVDEAIMRYLPAPDTMPAKLHQAMRYSVMAGGKRVRPVLMLAACAAVGGNEKNALPAACAMEMIHTYSLIHDDLPAMDDDDFRRGRPTNHKVYGEATAILAGDALLTEAFILLSDARINSDVPPEVLLRVCSTIARCAGSMGMVGGQVVDMESEGKEIDFPTLEYIHTHKTGALILAAIQSGALIGGADEKTFDALKRYGGAVGLAFQVADDILDVVGDSQALGKSAGRDHARGKNTYPALIGLDASRSRARDLVNVAHQAIEPLGEAAEPLRAIASYIIERET
>NZ_CP010311.1|WP_040199768.1|1373067_1373409_+|addiction-module-protein
MSTYPYEIDYYVTEDGSIPFKEWLESLRDVQGRARIRVGLDRVRLGNLGDHRSLGGGVQELRIAFGLGYRVYYGIEGRRIVLILLGGDKSSQKRDIAKAKQFWRDQQRRSAHD
>NZ_CP010311.1|WP_040199770.1|1373401_1373713_+|putative-addiction-module-antidote-protein
MIKTTAYQRDLVDALKDPVEAAAYLNAAIEDGDRAVFLLALRNVAEASGGMSALAEKAQLSRESLYRTLSARGNPEIKSLNAILHAMGLRLAVEPENRETSAA
>NZ_CP010311.1|WP_144401963.1|1373678_1374041_+|hypothetical-protein
MNQKIGKPRLPEISVLLSIGSGGRSDPILPPLNEVFFAGGRQIKSFLFFLLAAATVLCFSGCSKETIGGTAVGAGAAGAAYEYQNKQALDDLEDDYEGGQIDKEEYLRRKDEIEDKSAIY
>NZ_CP010311.1|WP_040199773.1|1374512_1375616_-|transposase
MDKLTAIFRSYGPEYLQQHGAKVPPQHRKVIEAILRCRTPESGTTIYRCEHCGEDHVLHLGCGNRHCPICQYRKGRQWLERQLERQMPGAHFMLTFTVPEPLRPFMRSNQRLAYSALFAASSEAMKRLAKDSRFIGGDLPGFFGVLHTWGRQLQYHPHIHYVVTGGAIASGTGQWMPSRNEFYLPVQALSLIVRAKFRERIKKAGRLGEIPSSVWKTDWNVNCQAVGDAEGSLKYLAPYVFRVAISSSRIVSVEKGRVTFSYKKKGSSRPRTREVSALEFLRLFLQHVLPWGFMKVRYYGFLSPGCRMPLAEVRARIQIAHGFAVTVPKVMPEPQPPLSCRQCGKELEGYRLILPPKRKPEKRARTG
>NZ_CP010311.1|WP_052464648.1|1375608_1376490_-|tyrosine-type-recombinase/integrase
MMTDWYEQSMRALQLSGKGDKTQQMYTRSVRKLVEFYEKTPDAITETELQDYFLHRINIDEWSPGTMRICHAGIRFFFTNVLDRSWRTFEYLHVQKERRLPTVLSCEEVQRVLACVYAFHNRVFLTTVYSCGLRLQEALHLEVSDIDKQRMMIHVYRGKGAKDRYVPLPMSTYKLLRKYWATHRHPRLLFPALGRNGKNAHKSQSPMAVSSVQGAMKNAVREAGIHKKEVKIHTLRHSYATHLLEEGVNIRVIQKYLGHSSLDTTLIYLHLTQKGNEDACALINTLMEGLFHG
>NZ_CP010311.1|WP_040199775.1|1376740_1377403_-|PEP-CTERM-sorting-domain-containing-protein
MFFRIATALAFVLFAAVHAAAVPISGLYSTGVDDSGNLLAIGTADSHYSLMFDDGTLTPRAITPHSAWADNTDDFAQWINPSSEQNPAGTATFSPGNYAYQLTFDLTGFDPSTAIISGQWATDNSASILLNGNATGITKPERGFVFLDSFVLDFGFLPSVNTLTFLVNNTGSSNNPTGLYVNMEGDVSATVVPEPSTLLLFGIGSLGVWFAGRRNHRKNS
>NZ_CP010311.1|WP_040199780.1|1378371_1378542_+|DUF1328-domain-containing-protein
MLGWSVTFFVIAIIAGVFGFTGIAAATAEIAKILFFIFLVLFVLSLIFGGLRKPRV
>NZ_CP010311.1|WP_040199782.1|1378773_1380021_-|NAD(P)/FAD-dependent-oxidoreductase
MHTYDVIVVGGGPAGMFAAGFAALEGASVLLLEKNKRCGAKLLITGKGRCNVTCSEENPRKFIEHLNPDGRPFLTALFAFGPSDVVDFFEQRGLSMAVERGGRVFPEKGGAAEVLALLERFITEAGVTVLTDCQVNELKLSNDQISRISTSRGLFEAESLILATGGLSYRETGCTGDGYRWADQTGHHLVKPEASLVSVKLAENWTGELCDFNLRHVQISVLLDGKKIDQRFGEAFFTRNGISGPIILDMSSAIRKALKSGKITLQLDLKPAVDTETFDRRLQRELEKNNNRDFGNSLAGLLPRDMIPVFIRLSGIDPTQKCHSVTRQERLKLLNLFKQLELNVTGCGGFKRAIITEGGVSLKDIDMRSMQSKKIRNLYFAGEMIDLDGPTGGFNLQICWSSGYLAGINAARHSK
>NZ_CP010311.1|WP_040199783.1|1380073_1380487_-|aminoacyl-tRNA-hydrolase
MLKISRQITIPENEIELHAVASQGSGGQNVNKVASAIHLRFDIRASSLPDSVKERLLNLNDQRITQEGVVVIKSQQYRTQERNRDEALKRLRNLIQSTMTTQRRRKPTKPTKTSKEKRLKEKTRRGQIKSLRGKVND
>NZ_CP010311.1|WP_040199785.1|1380895_1382347_-|DASS-family-sodium-coupled-anion-symporter
MDPSQFENPLKIDRRPMWAILFDRTRRYQVILILAALAVLFFSLEPPKELSPQGHRALVLFAACTFLWVSGLLPLAVTSLLAMAAVPLFGILERRETYALFGNEAVFFILSAFILAAAMSSSGLSARLARAMLARFGKTPGRLSLTVFVFSALLSFAMSEHAVAAMMFAMVAEIVRSLGLEPGRSSYAKLLFMSIAWGCVIGGIATFLGGARAPLAVGMLREATDKDFTFMEWTAAALPIVFPLMLMGYLLLRRLFPIDIDSVEKGQHYLKQRRLDMGRMNHREVIVAVVMTATIGCWIFLGHTLGLANIAIVAVAVLFAFRVVTWKKIEEYVNWGVILMYGGAITLAASLDRSGAAGYLADLGLSGLTGSPLLILAMIALLSLFLTECISNAAVIAMLMPIAISLEASMGLDPRLMTLVIALPSGLAFCLPMGTPANAIIFASGYLKMREMVLPGLMIQSLAIILFLATVRFVWPLLGYTLP

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Crispr_ID: NZ_CP010311_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010311_2

3133024-3133154

Orphan

Consensus_repeat	Method
GGCATAAGGGGACGCTGGTAACTTATG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP010311_2

>merge|NZ_CP010311|2|3133024-3133154|CRISPRCasFinder
GGCATAAGGGGACGCAGGGGGCAGGGGGCATAAGGGGACGCTGGTAACTTATGGCATAAGGGGACGCTGGTAACTTATGTAACTTTTGTCCCATCCCCTATTATGGCATAAGGGGACGCTGGTAACTTATG

>NZ_CP010311|2|2|3133024-3133154|CRISPRCasFinder
GGCATAAGGGGACGCAGGGGGCAGGGG	GCATAAGGGGACGCTGGTAACTTAT
GGCATAAGGGGACGCTGGTAACTTATG	TAACTTTTGTCCCATCCCCTATTAT
GGCATAAGGGGACGCTGGTAACTTATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010311.1\|WP_084212126.1\|3131908_3132688_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP010311.1\|WP_040201441.1\|3125305_3126088_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182827
NZ_CP010311.1\|WP_040202651.1\|3131162_3131417_-\|DUF4212-domain-containing-protein	unknown	unknown	gnl\|CDD\|132686
NZ_CP010311.1\|WP_040201440.1\|3123467_3125081_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|215257
NZ_CP010311.1\|WP_040201455.1\|3142154_3143696_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|313108
NZ_CP010311.1\|WP_040201445.1\|3129334_3131149_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|274698
NZ_CP010311.1\|WP_084212222.1\|3123253_3123457_-\|DUF2180-family-protein	unknown	unknown	gnl\|CDD\|227192
NZ_CP010311.1\|WP_040201457.1\|3144329_3144725_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP010311.1\|WP_052464975.1\|3137758_3138037_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP010311.1\|WP_040202656.1\|3140531_3142058_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|313108
NZ_CP010311.1\|WP_040201437.1\|3122363_3123101_-\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NZ_CP010311.1\|WP_040201452.1\|3136908_3137424_+\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|197366
NZ_CP010311.1\|WP_040201442.1\|3126140_3126719_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010311.1\|WP_040201444.1\|3128765_3129161_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010311.1\|WP_040201456.1\|3143929_3144340_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NZ_CP010311.1\|WP_040201443.1\|3126751_3128665_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP010311.1\|WP_040201450.1\|3135105_3136521_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|182539
NZ_CP010311.1\|WP_040201453.1\|3138299_3140393_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376935
NZ_CP010311.1\|WP_052464974.1\|3137534_3137771_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NZ_CP010311.1\|WP_040201449.1\|3134437_3135109_-\|response-regulator	unknown	unknown	gnl\|CDD\|182665

Protein	Function_ID	Function_description	E-value
NZ_CP010311.1\|WP_084212126.1\|3131908_3132688_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.72454e-59
NZ_CP010311.1\|WP_040201441.1\|3125305_3126088_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	3.1691e-105
NZ_CP010311.1\|WP_040202651.1\|3131162_3131417_-\|DUF4212-domain-containing-protein	gnl\|CDD\|132686	TIGR03647, Na_symport_sm, putative solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments. [Transport and binding proteins, Unknown substrate].	8.27988e-33
NZ_CP010311.1\|WP_040201440.1\|3123467_3125081_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|215257	PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.	0
NZ_CP010311.1\|WP_040201455.1\|3142154_3143696_-\|ATP-binding-protein	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	3.61989e-119
NZ_CP010311.1\|WP_040201445.1\|3129334_3131149_-\|cation-acetate-symporter	gnl\|CDD\|274698	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.	0
NZ_CP010311.1\|WP_084212222.1\|3123253_3123457_-\|DUF2180-family-protein	gnl\|CDD\|227192	COG4855, COG4855, Uncharacterized protein conserved in archaea [Function unknown].	1.60264e-11
NZ_CP010311.1\|WP_040201457.1\|3144329_3144725_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	1.36083e-18
NZ_CP010311.1\|WP_040202656.1\|3140531_3142058_+\|ATP-binding-protein	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.25954e-118
NZ_CP010311.1\|WP_040201437.1\|3122363_3123101_-\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	1.96538e-72
NZ_CP010311.1\|WP_040201452.1\|3136908_3137424_+\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|197366	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins. This family summarizes bacterial proteins related to CpxP, a periplasmic protein that forms part of a two-component system which acts as a global modulator of cell-envelope stress in gram-negative bacteria. CpxP aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Functioning as a dimer, it inhibits activation of the kinase CpxA, but also plays a vital role in the quality control system of P pili. It has been suggested that CpxP directly interacts with CpxA via its concave polar surface. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy suggests similar functions. A characteristic 5-residue sequence motif LTXXQ is found repeated twice in many members of this family.	4.28519e-16
NZ_CP010311.1\|WP_052464975.1\|3137758_3138037_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	3.75825e-19
NZ_CP010311.1\|WP_040201456.1\|3143929_3144340_-\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	1.16527e-27
NZ_CP010311.1\|WP_040201443.1\|3126751_3128665_-\|CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	1.86158e-134
NZ_CP010311.1\|WP_040201450.1\|3135105_3136521_-\|HAMP-domain-containing-protein	gnl\|CDD\|182539	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS.	3.37924e-131
NZ_CP010311.1\|WP_040201453.1\|3138299_3140393_+\|hypothetical-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	8.69788e-10
NZ_CP010311.1\|WP_052464974.1\|3137534_3137771_-\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	1.35346e-13
NZ_CP010311.1\|WP_040201449.1\|3134437_3135109_-\|response-regulator	gnl\|CDD\|182665	PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional.	6.42283e-107

>NZ_CP010311.1|WP_084212126.1|3131908_3132688_-|IclR-family-transcriptional-regulator
MMPARDKETYCIRSVENALALLEALGEEEDELSLSRLSERLGMNKASVFRLLATFESRGYVERKEGARGYCLGPLAYEIGQKLLSRMALLRKARPVMERLARECSEAVYLVLRRQDEALFIDMVDSAHQVKVVSLVGKRFPLRDCAAGRVLLAFAEPPSSEPGHGCGPAASIDEDMQIVRRQGACYDRHGVGEGSACVAVPLFAGGGRVVGALAVVGPDFRITPEAVDSVLLPALCAAADTISSKLGYLGAEFPSAGVH
>NZ_CP010311.1|WP_040202651.1|3131162_3131417_-|DUF4212-domain-containing-protein
MDRSAQAYWKAVLRLVGQILAVWFIVSYGAGIMFADALNNISLGGYPLGFWFAQQGSMYIFIALIFIYAKLMQRIDEKFDVHEQ
>NZ_CP010311.1|WP_040201445.1|3129334_3131149_-|cation-acetate-symporter
MSLTAITYLVVGLTFALYIGIAIWARAGSTSEFYVAGGGVHPVLNGMATGADWMSAASFISMAGLIANMGYGGSLFLMGWTGGYVLLAMLLAPYLRKFGKFTVPQFVGDRFYSKGASTVAVICLLVASLTYIIGQMTGVGVAFSRFLGVSNATGIFVGMAIVFMYAVFGGMKGITYTQVAQYCVLTLAYTVPAIFISLQLTGNPIPQLGLGSDMVGTSEPLLHKLNQIVMDLGFHEYTTQVPGSKLNMFVYTASLMIGTAGLPHVIIRFFTVPKVKDARYSAGWALVFIGIVYTTAPAVAAMAKMNLHGTVNQAVMSGGDLFDNNNILRYEDRPAWMERWEVTGLLKWEDKNNDGRIQYYNDKTTNPEVLAKAEAAGWNGSELSVNADIIVLANPEIALLPNWVIALVAAGGLAAALSTAAGLLLAISSAISHDLLKDMWMPDLSEKGELMAGKITMACSILVAGYLGLNPPGFAAGTVAIAFGIAASSLFPALMMGIFNKRMNKEGAIAGMLSGLGVTLIYVFAHKGILFIKGTEFLGLFGGEPNFFFGISPNAFGAIGAIVNFAVAYFVSKATPAPPDHIQDLVESVRVPRGAKAVDGSHGH
>NZ_CP010311.1|WP_040201444.1|3128765_3129161_-|hypothetical-protein
MVFDVSVILTWLLFLALFPIAFVWLRRAWRIFKQGDYSEVALKKGEPPPNPRKWAKPVGLVNLIAGLVLVWIIVGVPFWIATGVELGPFTRYEQWSAVGGSTIWLKIIADFIISRQAHPFPLGRKKNQKQG
>NZ_CP010311.1|WP_040201443.1|3126751_3128665_-|CBS-domain-containing-protein
MGLIRTLRDSEPFRDLPDEAISELERVAETRNFPPLVHIFNQHDSPTGYLYLIKEGLVEIVALTPGGVEMVVDYRKEGGFFGGTPIFTHEPYTAGARTVKATECYLIPQDALVEMAEQYPRIREYFTRVILSRVRNLYSEMVDDHARAALTQMDAYPFKKRLSEIMTTPVQTCTPEESIREVARRMIQYDIGAMIVSEADRPVAGIITKHDLVEKVLARDGLNCDQVSAAEVMTPHPHRMAPDAYMYEATAFMLRHKIEHMPVIDGGEVVGMVTLRNLMRFRSQKSMLLVGSVREAQTVEELVAARAGMVEVAKALMGEARSHFETMEILSYIHHCIMQRAFDLVLAQMKEEGATPPDIKFCLIIMGSGGRKEMLLGPDQDNGIIYEDFPDALQPEVDAFFVPLCERLVDTFERIGYPRCNGKVMADNPMWRGRLSDWKERISGWIDVPEPKRVMYSTIFLDFMPLVGDPTLCQDLREILHRAIRRKPIFLYYLLENELNNKVPVGLLGRFVTEKSGPHKGELSLKQAGSVFIVDCVRMFLLERGLDATTTVERLDALVKLNVFNQETADHLKAALEAFTFLRLRQEIALIDQGQPPSHYLDPYALGKNEQDLLREAFRAAGKLQDSTKRHFGRGAR
>NZ_CP010311.1|WP_040201442.1|3126140_3126719_+|hypothetical-protein
MAKPSRFIWCGVHQQRKILESCPKCGHFPCRGLTAGQIARIAESTPLEKTVTRATKRRIAPMYFLVKDDQSLEVYTGTLDELPPEKAAEAVEALECSAYIVQELTWVPAGKEKKVKIAGAGKKALCVLESSNGTLSLTEADPAERIEEGAKLYPVDKRLVRQYVPVKISLESEDSSPSKPPVTTRKKSAAKK
>NZ_CP010311.1|WP_040201441.1|3125305_3126088_+|DeoR-family-transcriptional-regulator
MTPSQPDLTPRQQQIMDLAQQQGFVATEEMVRILDVTPQTIRRDINELCSQGLLRRYHGGAGLASSIENVDYQVRQVLCLEEKKRIAALVADQIPDRASIFINIGTTTEEVAKALRDHQGLRVITNNLHVAALLSANADFEVTIAGGIVRPRDGGIIGEATLDFIRQFKVDYGIIGISGIDRDGSLLDFDYREVKVAQAIIANSRKVFLAADHTKFGRNALVRVCPIEQIDALFTDAPPPREIANLLAREKIDLHVASAL
>NZ_CP010311.1|WP_040201440.1|3123467_3125081_-|FAD-dependent-oxidoreductase
MTRKQVLSRLRQDDPYDLLVIGGGATGCGTALDAASRGLKTALIEKNDFSEGTSSRSTKLVHGGVRYLEMAIKRLDRTQYNLVKDGLYERGVLLKNAPHLANRLPLVTPLYSWLEVPYIFAGLKLYDILAGKMGIGGSRIVSRKEALKRFPMLKSEGLKAGVLYYDGQFNDARMAVTLVTTAGRQGAVTANHVEALSLVKEDGQITGAQVRDKISGEEFMVRARGVVNAAGPFVDSIRRMDEPDVEPILKASSGIHIVLDKRFVPPETGLMIPKTEDGRVLFILPWQGHALIGTTDEPAEITDHPRPKEEEVAYLLRHISKYFDLEITEKDIKSTWSGLRPLLHDPKAADTARLARDHIIQVSGSGLLTIAGGKWTTYRKMAQDAVDHAVKTFNLSPAAECFTDHLPLVGAEDYREDGDQVLIRDFNLAEDVASHLHRSYGSEAPKVAELARQGLGERLHPDHPVIEAEVAHVVRFEQAERAADVLVRRTTLALLDKEAAGMAAERVIAIMAKELSWDEPRCQAERDLFAERLQTAL
>NZ_CP010311.1|WP_084212222.1|3123253_3123457_-|DUF2180-family-protein
MMNCYPCARENKETPAVAVCSVCGKGLCLEHTVERELPLVQRVSGWVDQSLIHLLCAECAEVKTLTD
>NZ_CP010311.1|WP_040201437.1|3122363_3123101_-|aquaporin-family-protein
MAGSDIFLGEFIGTMILVLLGDGVVANVLLEKSKGQNSGWIVITAGWGFGVAIAVYVAGWISGAHINPAVTLGFVAIGQVGAMDAVIYMCGQFSGAFAGAVLVWLAYLPHWGKTDSPELKLAVFCTGPAIRAYSRNLVTEIIGTAFLLIGVMGIFNANNGIGSGFGPYAVGILVFSLGLSLGGPTGYAINPARDLGPRLAHALLPIAGKGHSDWAYSWVPIAGPVIGGVLGAVLYQTVVTRLVVG
>NZ_CP010311.1|WP_040201449.1|3134437_3135109_-|response-regulator
MNGTILIVEDERKLAELLSDYLKQAGFSTHILSDGREVAPWVREQAPELVLLDLMLPGRDGMDVCRDLRGFSRVPIIMVTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRTSDDQDAAHAGLELDAGRLRATLSGQDLGLTAVEFKLLAFLGNHPGRIYGREQLMDHIYPDERIVSDRTIDSHIKKLRKKIAAVDPSRELIRSVYGAGYTFDPQ
>NZ_CP010311.1|WP_040201450.1|3135105_3136521_-|HAMP-domain-containing-protein
MGLKSKLFAVLLGVACTVILGMFLLMQWSFDRGFLRYVHTVEKQRLASLSQVLEQRWEEWGDWEVLRGNRMLWRELLRDSLVADPVVADSDVEISSRNGMPMPRMGEGHFMRRLVLLDEQRRPVHAVADADEARDFLSLTADGEVIGYLGLVPQRHLSTMHQLEFAQEQRRSFFIIALLVAGGAALLALPLATTLLRRVRALTDATHQLATGNYDVRVNEGARDELGRLAQDFNRLAQTLENNEIARRQWIADISHELRTPLAVLRGEIDAMQDGVRPTDSAAIESLHGEAMRLHRLVDDLYQLSLADLGALTYRKQSVDPVAVLAEAVAEFRPALDRARINVDNRAHPLAGGMVSADRERIYQLYANLLANVLKYTDPGGRLEIDADCEDERMIVEIQDSAPGVPQEALPRLFDRLYRVEHSRSRATGGAGLGLSICRAIVDAHGGTIEAHPSKLGGVLIRIIFPLEERL
>NZ_CP010311.1|WP_040201452.1|3136908_3137424_+|Spy/CpxP-family-protein-refolding-chaperone
MNIKKILSIALIGLLSTAVLATSSFAAPGQGAKMGGGKAMTEEQRQERQDLHLERMAAVLDLTEEQKTQIEALRNQKWENTAAQQGKMTELREELREMGLDGSYDEARARALANELATIKADMMVENIRLRSEIHSLLTPEQQELTEKLRPLKQNCKGQGCKNKGRCVDMM
>NZ_CP010311.1|WP_052464974.1|3137534_3137771_-|DUF86-domain-containing-protein
MVRVRKLGLPQESREAFALLEKAGVLDGELSVRLQAMVGFRNVAVHDDQKLNLEIVKSILEEGLQAFRRFCGVLTRTA
>NZ_CP010311.1|WP_052464975.1|3137758_3138037_-|nucleotidyltransferase-domain-containing-protein
MDHMIVQCLREAVPRLLAVYRFGSFGTEGEHPASDLDIAFLAEASPSRVQRWRLAQEMATRFGRDVDLIDLAQATTVFRMQVIAHGRRIWCV
>NZ_CP010311.1|WP_040201453.1|3138299_3140393_+|hypothetical-protein
MPNTNGFSGPPEGPIDLERLLPQAAARILEDEDPELFRTWLAGHLPDFALGEMKNAPADLFRAMAVPVSYMIWNATPLPGNNFRPRPLPKPTRNDPCPCESGHKYKKCCSNAPPFPVLDTMVMWPLVLSNLTSDQIEQAARQGILPLEALVTAAAESLENDRPLLAIELLRPHFEKPIKKPSPVDDFALQLLCDAYDEFGQAAEKLELLARISRETTKSPLRAGAWQRLTAIYLDNGDLEGGRETFANALRDDPGSPSCAILEMQLLAIEERFDQISTRADFWLRKLQRSQNPPETIEHITEILQELIDNPHYAAVLLDDHHLFNDNDLDDDEELDETSLRLLDWVDLAIERPLPSYSTDENALDLEDKDEVAGYLGRLGLSGKELDKAMKQIEEQTEEGLAKEDPEQLDPESSLVFQPPPEIEKLEAQWHAVSQLDKPFGIQNFPDQHWEGWEPEQAEPWIGFLEQHPEAADSLDILDDLVTAFFLYPDMPQPVMSREGMVPLLRRAVAIIEKNLVGIKDSRLLWNRLSNRPALRSLNRLYAVTRYGFEDLQEADRLAEFVFEINPHDNHGLRREYINDLLRRGENERALAVTEMFPDDVFVETVYGKLLALYRLGRLKSAQPLAEEAIDAYPLVAPYLTRARIKKPRMSESGIHIGGKDQAWLYREEMRETWQQSPGALDWLKKIMKIKGVRLRG
>NZ_CP010311.1|WP_040202656.1|3140531_3142058_+|ATP-binding-protein
MKKLPIGIQTFSQIREEQYLYLDKTPQIKQMVDEGKYYFLSRPRRFGKSMLVSTLQALFEGRRELFTGLYIEDKWDWGKTYPVIKISFGGVARDADAMRRMVASIMQSNQKRLGIQCRNPEYGGVCLKEMIEQAHEKYGRKVVILVDEYDKLIVDNLDQPKIARQGREILRDLYTTIKDSDEYVQFAFLTGVSKFSKVSVFSGLNNLEDITLNPTFATICGYTQHDLETSFADHLDGVDMDQVREWYNGYNFLGDKVYNPFDILLFIKNGQVFDNYWFATGTPTFLIKLIEKNTYFIPQLDHLRVSKSLIDSYDIENMKLEPLLFQSGYLSIKEQRQLSYGIEYILGFPNKEVAISFNDHVAAALTEANTAQAKGKLYDSLAQADLDQLEQTLMALFAAIPHTNYTRNTISAYEGYYASVVYAYLASLGLQLIPEDVTSTGRIDLTIRMNNITYILEFKVDGQGNALKQIKEKGYHQKYQRPDTDTYLIGIDFDSGKRNISTFEWEKV
>NZ_CP010311.1|WP_040201455.1|3142154_3143696_-|ATP-binding-protein
MTQLAKLPIGIQTFSEIREEEYAYVDKTPLVLRLATEGKYYFLSRPRRFGKSLLLSTLQALFEGQRELFNGLDIEDKWGWDTRYPVIKISFGGVARSLEDMKQDVGNILEENQRRLDIPCGDPQDIGGCFKQLIRDAHQKYGQKVVVLVDEYDKLIVDNLDQIEVAKQGREVLRDLYSIIKDSDAFIKFAFLTGVSKFSKVSIFSGLNNLEDISLNPDYATLCGYTEHDLDTTFAAHLEGVDRAKVRQWYNGYNFLGEAVYNPYDILLFLKNGRQFKNYWFSTGTPSFLIKMIHQNSYYVPKLDNLMVSEGLIDSYDIENIQLEPIMFQTGYLTIKEQTQVGAITMYQLCFPNLETRYSFNEHILSYLTGQQAEKTRYQSEIFQTLTAADMDGFEQTLKALFASIPYHNYVNNTIGSYEGYYASVIYAYLASLGLDLTAEDVTSKGRIDLTVRMENAIYILEFKVDGSGDALAQVKERNYQQKYQGAGKEIILIGIDFDSTTRNITRFAWEKV
>NZ_CP010311.1|WP_040201456.1|3143929_3144340_-|DUF86-domain-containing-protein
MADDVLLNKVSVIERCMGRVQEEYAGHEDELETNFTRQDAIVLNLLRACEAAIDAAMHLVRVRRLGLPQESRESFALLEKAGVLDGELSVRLQAMVGFRNIAVHDYQKLNLEIVKSILEEGLQDFRRFCEVLTRMA
>NZ_CP010311.1|WP_040201457.1|3144329_3144725_-|nucleotidyltransferase-domain-containing-protein
MDHMIVQCLREAVPDLLAVYRFGSFGTDAERLESDLDIAFLAEASPSHVKRWRLAQEMATMFGREVDLIDLAQATTVFRMQVIAHGRRIWCADEVRVETYADYVFSSYARLNEERRWILQDIRERGNIYGG

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Crispr_ID: NZ_CP010311_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010311_3

3260585-3260653

Orphan

Consensus_repeat	Method
AATCTTTAAGTGGGTGTCCTATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010311_3

>merge|NZ_CP010311|3|3260585-3260653|CRISPRCasFinder
AATCTTTAAGTGGGTGTCCTATAGAGTCGCATAGGGGGAGTGTCAATCTTTAAGTGGGTGTCATTTAGA

>NZ_CP010311|3|3|3260585-3260653|CRISPRCasFinder
AATCTTTAAGTGGGTGTCCTATAGA	GTCGCATAGGGGGAGTGTC
AATCTTTAAGTGGGTGTCATTTAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010311.1\|WP_144401929.1\|3253743_3254811_-\|DUF4338-domain-containing-protein	unknown	unknown	gnl\|CDD\|372975
NZ_CP010311.1\|WP_040201584.1\|3265907_3266837_-\|D-glucuronyl-C5-epimerase	unknown	unknown	gnl\|CDD\|369025
NZ_CP010311.1\|WP_144402086.1\|3269472_3270915_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240532
NZ_CP010311.1\|WP_040201581.1\|3262444_3263671_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NZ_CP010311.1\|WP_084212156.1\|3264801_3265911_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NZ_CP010311.1\|WP_040201575.1\|3261437_3261665_-\|antitoxin-RHH-family-protein	unknown	unknown	gnl\|CDD\|369567
NZ_CP010311.1\|WP_040201575.1\|3250964_3251192_-\|antitoxin-RHH-family-protein	unknown	unknown	gnl\|CDD\|369567
NZ_CP010311.1\|WP_040201013.1\|3257144_3258839_-\|transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP010311.1\|WP_040201583.1\|3263731_3264796_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|340819
NZ_CP010311.1\|WP_040201587.1\|3270904_3272056_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NZ_CP010311.1\|WP_144401929.1\|3255677_3256745_-\|DUF4338-domain-containing-protein	unknown	unknown	gnl\|CDD\|372975
NZ_CP010311.1\|WP_040201585.1\|3266814_3267948_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
NZ_CP010311.1\|WP_040199265.1\|3253021_3253702_-\|ISAs1-family-transposase	unknown	unknown	unknown
NZ_CP010311.1\|WP_040201579.1\|3261160_3261457_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP010311.1\|WP_040201576.1\|3251654_3251948_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_CP010311.1\|WP_052465095.1\|3267944_3269069_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010311.1\|WP_040201574.1\|3259452_3260559_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010311.1\|WP_040201574.1\|3249754_3250861_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010311.1\|WP_040199265.1\|3254955_3255636_-\|ISAs1-family-transposase	unknown	unknown	unknown
NZ_CP010311.1\|WP_040201577.1\|3251935_3252208_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|226420

Protein	Function_ID	Function_description	E-value
NZ_CP010311.1\|WP_144401929.1\|3253743_3254811_-\|DUF4338-domain-containing-protein	gnl\|CDD\|372975	pfam14236, DUF4338, Domain of unknown function (DUF4338). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 206 and 475 amino acids in length.	3.01824e-43
NZ_CP010311.1\|WP_144402086.1\|3269472_3270915_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.0015e-26
NZ_CP010311.1\|WP_040201581.1\|3262444_3263671_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.36113e-86
NZ_CP010311.1\|WP_040201587.1\|3270904_3272056_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	2.53461e-154
NZ_CP010311.1\|WP_040201575.1\|3261437_3261665_-\|antitoxin-RHH-family-protein	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	0.00100347
NZ_CP010311.1\|WP_040201575.1\|3250964_3251192_-\|antitoxin-RHH-family-protein	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	0.00100347
NZ_CP010311.1\|WP_040201013.1\|3257144_3258839_-\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.00026428
NZ_CP010311.1\|WP_040201583.1\|3263731_3264796_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|340819	cd03786, GTB_UDP-GlcNAc_2-Epimerase, UDP-N-acetylglucosamine 2-epimerase and similar proteins. Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family (EC 5.1.3.14) are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	2.88298e-142
NZ_CP010311.1\|WP_144401929.1\|3255677_3256745_-\|DUF4338-domain-containing-protein	gnl\|CDD\|372975	pfam14236, DUF4338, Domain of unknown function (DUF4338). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 206 and 475 amino acids in length.	3.01824e-43
NZ_CP010311.1\|WP_040201585.1\|3266814_3267948_-\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	4.90768e-34
NZ_CP010311.1\|WP_040201584.1\|3265907_3266837_-\|D-glucuronyl-C5-epimerase	gnl\|CDD\|369025	pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus. This family represents the C-terminus of D-glucuronyl C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases catalyze the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans.	6.48267e-41
NZ_CP010311.1\|WP_040201579.1\|3261160_3261457_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	8.008e-11
NZ_CP010311.1\|WP_040201576.1\|3251654_3251948_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	1.15991e-08
NZ_CP010311.1\|WP_084212156.1\|3264801_3265911_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	2.29154e-44
NZ_CP010311.1\|WP_040201577.1\|3251935_3252208_-\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|226420	COG3905, COG3905, Predicted transcriptional regulator [Transcription].	5.4369e-15

>NZ_CP010311.1|WP_040201574.1|3259452_3260559_-|hypothetical-protein
MTMPRSNLVSLSDTPWYHVVSRCVRRAYLCGEDYSSGKNFEHRRGWIESRICELSSIFAIDVAAYAVMSNHYHIVVRIDAERAAGWGDEEVLARWTRIFSGPGLVQKYLGTERDTLSATELSNIAALAETYRKRLHDLSWFMRVLNETIARMANAEDGVTGRFWEGRFKSQALLDDQALLTAMAYVDLNPVRAGLAQTPEESAHTSVRRRIADLFPKTAEEEASPAEKRTPPAAQVRKAAADLRRRQEHVRPESELRQLEPAPLLDFSPSVQVDGAIPFTLPDYLELVDALGRAVHPAKRGFIPETTPAILSRLNIDFDTFFATADQFLSGFGSAVGTAQHLTALAEQRQCRYLRGVGQARSVFGRVA
>NZ_CP010311.1|WP_040201013.1|3257144_3258839_-|transposase
MNLHDRASRNIARRLSFQTAAKDQAGIALDLAAGKDVPEVYHLSDAGFFDEFFYFLEEIGVMPRLLELDPKVSSRPTTVRFPAVILIYLMRIVAGLAFYWHIEPVVLHSQALMRLVGFNGREILEGTSLRGRKKPTAETSPEAADSPDGSGQSEPGSPIRGPVCADSIATYIQAIAASALERLFNTVVAVLAARSFFPKTVHATLDASEIQSTQRCEGCGMVSKEKPPTLRLRKGRIKKVLERVFGFKIWVIWEPVSGLPLALRFATIETADVTLAREVVAQALSNLGGQATLSSLAFDRGFTDGAFWWWLHQQGIHFYVPAKKNMAVYADALACAANGVRQSRQKTRSVGHGKNKTSVVDRWEAVGIDGLTSAGFYGEHGSGSHEHAANFSANPINAVVVVDDPYCRNNPGCDTMVILTNAAVAKPLCAYDRYDRRSEMENALFREAKQAWFIERPAKNTARAFRAHVYLTLLTMALSTAFRTWLEQQDKKERAGEQTGIRKYRQQVRQDNGNKVIVFDEGRYAIFEVYELVILCGRTVVRPRGVPESITTTDILRKYGAIKE
>NZ_CP010311.1|WP_144401929.1|3255677_3256745_-|DUF4338-domain-containing-protein
MNLKEIHVRPVSALEEDRYRETMQAHHYLGDLPKIGETLWYVAILRQQWVALLSFSAAALKCAVRDQWIGWDHRRQYDRLKLVANNSRFLILPQWHLPNLGSRVLALCEQRIQRDWLERFGHPLVLMETFVDPQRYQGTVYKAANWLCLGQTKGFRRTRQGYSNLAQSPKMVFVRALQSNAQSLLSRPLLGAPYCPGDVKMLLTANQMRSLPEFFTDIPDPRRAAGKRHRLSTVLAIAAGATLCGMRGYKAISDWAKSLGPKARERFGCRKKQGQYLVPSEYIIRDILIRVDPDHLDRSFQRWNEAYAGADESLAIDGKTMCNATDEQGRKTHIMSAIGHETKTCHTQKKSASCR
>NZ_CP010311.1|WP_040199265.1|3254955_3255636_-|ISAs1-family-transposase
MAIPLLEAISIEGKTISADALLTQRRLARYLVEDRQAHYHFTVKGNQPRLLEDLTLYFHGRQEPHAVTVDSDHGRIETRRIWVTAELNDYLDFPHVGQAFMVERERVNKKSGKVSTETVYGITSHTPQQADAQRILKTNRNHWCIENSCHYIIDWNYDEDRSRIRTGHGPENITRLRRFAVGLIKSKSVGSVAQKMRMLAMNPRAVFDYLRMTDNTRSRRSAAGCN
>NZ_CP010311.1|WP_144401929.1|3253743_3254811_-|DUF4338-domain-containing-protein
MNLKEIHVRPVSALEEDRYRETMQAHHYLGDLPKIGETLWYVAILRQQWVALLSFSAAALKCAVRDQWIGWDHRRQYDRLKLVANNSRFLILPQWHLPNLGSRVLALCEQRIQRDWLERFGHPLVLMETFVDPQRYQGTVYKAANWLCLGQTKGFRRTRQGYSNLAQSPKMVFVRALQSNAQSLLSRPLLGAPYCPGDVKMLLTANQMRSLPEFFTDIPDPRRAAGKRHRLSTVLAIAAGATLCGMRGYKAISDWAKSLGPKARERFGCRKKQGQYLVPSEYIIRDILIRVDPDHLDRSFQRWNEAYAGADESLAIDGKTMCNATDEQGRKTHIMSAIGHETKTCHTQKKSASCR
>NZ_CP010311.1|WP_040199265.1|3253021_3253702_-|ISAs1-family-transposase
MAIPLLEAISIEGKTISADALLTQRRLARYLVEDRQAHYHFTVKGNQPRLLEDLTLYFHGRQEPHAVTVDSDHGRIETRRIWVTAELNDYLDFPHVGQAFMVERERVNKKSGKVSTETVYGITSHTPQQADAQRILKTNRNHWCIENSCHYIIDWNYDEDRSRIRTGHGPENITRLRRFAVGLIKSKSVGSVAQKMRMLAMNPRAVFDYLRMTDNTRSRRSAAGCN
>NZ_CP010311.1|WP_040201577.1|3251935_3252208_-|ribbon-helix-helix-protein,-CopG-family
MATSIKIDDDLRARIRSLAQRRRRSSHWIMREAIEQYVAREEARESFKQEAYASWSAYQETGRHLTGDEVRDWLGRWGSEDETELPDCHE
>NZ_CP010311.1|WP_040201576.1|3251654_3251948_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MPRVVITEGAARGLKRCRRFLMNKSPEAVTHAALAIRERFDLLISQPEIGRPLGDDLDLRELLIEFGDSGYVALYRYDNLADVVYVLAFRHQKEAGY
>NZ_CP010311.1|WP_040201575.1|3250964_3251192_-|antitoxin-RHH-family-protein
MPAKNPRVNVVLEKPVYNALHDLAENEGVSMSMLMRDLVKEALELREDRALAEFAAEREKDFDPSEALSHDEVWG
>NZ_CP010311.1|WP_040201574.1|3249754_3250861_-|hypothetical-protein
MTMPRSNLVSLSDTPWYHVVSRCVRRAYLCGEDYSSGKNFEHRRGWIESRICELSSIFAIDVAAYAVMSNHYHIVVRIDAERAAGWGDEEVLARWTRIFSGPGLVQKYLGTERDTLSATELSNIAALAETYRKRLHDLSWFMRVLNETIARMANAEDGVTGRFWEGRFKSQALLDDQALLTAMAYVDLNPVRAGLAQTPEESAHTSVRRRIADLFPKTAEEEASPAEKRTPPAAQVRKAAADLRRRQEHVRPESELRQLEPAPLLDFSPSVQVDGAIPFTLPDYLELVDALGRAVHPAKRGFIPETTPAILSRLNIDFDTFFATADQFLSGFGSAVGTAQHLTALAEQRQCRYLRGVGQARSVFGRVA
>NZ_CP010311.1|WP_040201579.1|3261160_3261457_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MTRFGGRGVFSVVYHPQVKARDIPKLNGDIRQRIRKAVEARLMVAPQEYGEPLRKTLRGYWELRVGDYRIVFKVEGDEILILGICHRKEVYPLMEKRQ
>NZ_CP010311.1|WP_040201575.1|3261437_3261665_-|antitoxin-RHH-family-protein
MPAKNPRVNVVLEKPVYNALHDLAENEGVSMSMLMRDLVKEALELREDRALAEFAAEREKDFDPSEALSHDEVWG
>NZ_CP010311.1|WP_040201581.1|3262444_3263671_-|glycosyltransferase-family-4-protein
MNIVFIAHFAGSPRHGMVYGHYYLAREWVRLGHQVTVVAASYAHTRFQQPDSQISEERIDGIRYIWLKVPRYNAAGRVGRVLNIIAFTIASYSPFLRKKLGKLDLVISSSHHPFSIFPSQSLAKKSSARLVFEIRDLWPLTLIELGGTSARNPFIRMMQFSEDYAYRHSDKIVSVLPGAKSYMLQHGMAPDKFVFIPNGVDLGEAKTKIDLDGKIKRILEAKKKDGKFIVGYCGRIGLANSLHTLVKALEQCADSDICVALLGDGAEKKNLQMYVDKKDLKEQVLFFDSVAKEQVQGFLDLLDVAYVGLQKQPLFRFGVSPTKINDYLLAGKTVISAIEAPGEIVSESGAGYNCNAEDPESLCKCIKKMKELSVDERESMGQKGHRWILENRDYRILAERFLEKVMSR
>NZ_CP010311.1|WP_040201583.1|3263731_3264796_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKKILTVIGARPQFIKASVVSRAIQQTDGLEEILLHTGQHFDANMSDIFFNQLNIPRPDFQLDIHGGRHGEMTGRMLKEIEKALLAHKPDRVLVYGDTNSTLAGALAAAKLHVPVAHVEAGLRSFNMQMPEEINRILTDQVSDLLFCPTDAAVQNLNNEGFANKPVQVLQVGDVMQDSALLFTEKAEPPAGDLPERFVLATLHRAENTDYPERLAAIVAALNQIHGTLVPVVLPLHPRTRKLIAQHGLELKAHLIDPVGYFEMVWLLDHCQLVLTDSGGVQKEAFFFGKPCVTMRDQTEWVELVAIGANQLVGADSRKIIEAVKTNFGREVQDTQELYGGGKAADKIVEVLAFS
>NZ_CP010311.1|WP_084212156.1|3264801_3265911_-|glycosyltransferase-family-4-protein
MIHIVHLTSVHSRYDTRIFLKECTSLADQGFTVSLVVADGNGDEACDGVHFYDVGASKGRLDRIRNAPARVYKKALELNADLYHLHDPELIPIGIKLKHAGKKVIFDSHEDVPRQLLSKHYLNKTALKIISKIYAIYEKWTSRKLDGIIAATPFIRDKFLPINPVTVDINNFPLLPELESQTSWDDKQPEVCYVGGIAKIRGIHEVVDAMGLVQSDFTLNLCGQFGNPTTEDAVKNSPGWKRVKAHGFVNRAGVRDVLSRSVAGVVTFHPLPNHLDAQPNKMFEYMSAGIPVIASDFPLWRQIIEGNQCGLLVDPLDAKSIAEAIDYLVMHPEEARKMGENGRRAIEDKYNWQAEEKKLLDFYQQILKG
>NZ_CP010311.1|WP_040201584.1|3265907_3266837_-|D-glucuronyl-C5-epimerase
MLYTKVYKDILKYLFSTNDFSQLSIGNGYPYPLDLGFTLEDESFYYHPQDKDGVPYRLYQSVGKQYNPTRIAAYALANFNCYALYNYDSCFEIFLKCADWFLGIEDARYEYHFDWSDLKAPWISSMAQGEAASVLIRAYKITGDEKYLKHAKLSLEPLFVRIGSGGVQSLLPDGSLFVEEYPSRNPTHVLNGFLYALIGLGEYAEITESKRHKDLFRQLSLSVCTNIDIWCHGRWSLYEDRIKAKGLNFCTPSYHNLQITQLKWLNARVNDPEIEKTINAWEKGLGNLWTRLFAFAGKAYFRLKNRAQR
>NZ_CP010311.1|WP_040201585.1|3266814_3267948_-|glycosyltransferase
MKKIANVVLNDFTNDSRVLKISKSLLHFGYDPTVVAMHNIGLSEHDSIQGVKTHRLKLISRPWPKWRPIQILKYVEFVFRAVWRYRNVDIVHCNDLNALPIGVLIKILNKNVKIVYDCHEYETEMDGLSGFEKFVKKVMERLFIPFTAKITTVSNSIANEYVKLYKIFKPGLVLNCPAYYEQPKNNIFRDTLGIRSDQVIFLYQGGLKGGRGIELLLESFSGFESDKNVLVCMGYGPLENLIQKKTEQHNTIFFYPAVSPDVLLNYTSSADYGILFYEDTCLNHRYCSPNKIFEYLMAGLPVLTSNLFEMKRLVETEGVGIVAQENTVEGFRKAVEASLKQNYTAIQQNVFAARKKYCWEEQEKVLKGIYSALHKSI
>NZ_CP010311.1|WP_052465095.1|3267944_3269069_-|hypothetical-protein
MLFLLLIVWVAIRIIIDLGDMEYLKQITIATTGGMLLFYLLGAFLGLSYQSILTPSNRLFAVKFVIMLFASLMVWVLYNFSQRLHPHLFYLLDVDGSYQRSGNFLSILCIIFSFIYLQLVLKRIGQVVRIASCFFWLGVYTLSTFMALVSSQLFGSNSATAVILGVYLITLVMNLILPKKTIWLNYLKQRLALPWSKRLVKQLTLMPVVALALFVAHLVLIIRATGFDLTSLRLLGFGSGSNTSLLSRIEILLETGANQMSYSPFLGNINVAYLTTGDSGRTLHSFFPYVMANLGLVGLTIVLALFASVLMQLCHESSRVSGGCLYGYQSSMIALYSIFIFLYILFFANLATGVSWAVLWFTFGFISKPFGFSK
>NZ_CP010311.1|WP_144402086.1|3269472_3270915_-|oligosaccharide-flippase-family-protein
MIARAREGVRRLLPKNKFARSVSVLVGGTTGAQALMVLASPLLTRLYTPEDFGLLAVYSGLLALFAVIASLRYELAIPLPESNTEAANVLVLSLLVVLLMTGISVLMVLLAGQQIAHALDTPKLAQFVWLLPIGVLLSGIYKVFNYWAVRTKAFGDIARTRISQTLATLAVQLFGYKLGGLALLFGQAGGQGMGSLRLARSAIKHQEFNTWSWGGVWLAAKRYKQFPLFSTWSGLFNAAGTQLPPLMFAALFSAGAAGLYALASRILRLPMTVLGGAIGQVYFSDLAKAKQSGGFSTQVEKAAEGLLKVSLPAAAAFMLLAPEIFGLVFGTDWRLAGDIARWMTPWILFQFISSPLSVVYFVLEKERLGFFFQVSMFLVRLSVVFLGYIYLDFMGTLIAFSLVSAFCYISYCYSIIFLSGAKFKSFSLVILTEVIKVGVALISAVLSFSYWGLYPALVVSILLLLVFYIPRFREFYIGHS
>NZ_CP010311.1|WP_040201587.1|3270904_3272056_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MTDIPFVDLKTQQDRIRPQIDAAIKRVLDHGQYIMGPEVFELEEKLASFTGAKHCISCASGTDALLMALMSLGIGPGDEVITSPFTFVATGEVISLVGATPVFVDIDPRTFNIDPSKIAAVITENTRAIIPVSLFGLPADMDAIAEAVAPHPITVIEDAAQSFGATYKGRKSCNLSTLACTSFFPAKPLGCYGDGGAVFTSDDTLAETLRSIRIHGKGGDKYDNVRIGINGRLDTLQAAILLPKLDIFPDEIGARQKAAATYKQLLADLIDQRSTINNQRVLAPFIPDDHTSAWAQYSVLTASKEKRDNLQKHLAKAGVPTAVYYPKPLHLQTAYAGLGYKAGNFPVAENVAQRIVSLPMGPYVEEGDQVKVVEAVSVAVLDS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP010311.1	3417950-3417981	0	1.0
NZ_CP010311_2	2.1\|3133051\|25\|NZ_CP010311\|CRISPRCasFinder	3133051-3133075	25	NZ_CP010311.1	3230665-3230689	0	1.0

1. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to position: 3417950-3417981, mismatch: 0, identity: 1.0

gccgatatcgcgaaagaccggcgcgaggttgc	CRISPR spacer
gccgatatcgcgaaagaccggcgcgaggttgc	Protospacer
********************************

2. spacer 2.1|3133051|25|NZ_CP010311|CRISPRCasFinder matches to position: 3230665-3230689, mismatch: 0, identity: 1.0

gcataaggggacgctggtaacttat	CRISPR spacer
gcataaggggacgctggtaacttat	Protospacer
*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	512143-512174	6	0.812
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	696870-696901	6	0.812
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	671918-671949	6	0.812
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	648765-648796	6	0.812
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	417036-417067	6	0.812
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	598700-598731	6	0.812
NZ_CP010311_1	1.2\|1369169\|33\|NZ_CP010311\|PILER-CR,CRISPRCasFinder,CRT	1369169-1369201	33	NZ_CP046705	Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence	266285-266317	7	0.788
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	580127-580158	7	0.781
NZ_CP010311_1	1.3\|1369234\|34\|NZ_CP010311\|PILER-CR,CRISPRCasFinder,CRT	1369234-1369267	34	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	105326-105359	8	0.765
NZ_CP010311_1	1.40\|1371670\|35\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1371670-1371704	35	EF057797	Vibrio phage VP882, complete genome	3450-3484	8	0.771
NZ_CP010311_1	1.40\|1371670\|35\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1371670-1371704	35	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	797038-797072	8	0.771
NZ_CP010311_1	1.45\|1372000\|33\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372000-1372032	33	NC_015178	Acidiphilium multivorum AIU301 plasmid pACMV1, complete sequence	257329-257361	8	0.758
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP018231	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3	170168-170199	8	0.75
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	1114359-1114390	8	0.75
NZ_CP010311_1	1.50\|1372325\|33\|NZ_CP010311\|CRISPRCasFinder,CRT	1372325-1372357	33	NZ_CP045177	Streptomyces tsukubensis strain AT3 plasmid pST1, complete sequence	728-760	8	0.758
NZ_CP010311_1	1.50\|1372325\|33\|NZ_CP010311\|CRISPRCasFinder,CRT	1372325-1372357	33	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	1179622-1179654	8	0.758
NZ_CP010311_1	1.3\|1369234\|34\|NZ_CP010311\|PILER-CR,CRISPRCasFinder,CRT	1369234-1369267	34	NZ_CP014169	Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence	132795-132828	9	0.735
NZ_CP010311_1	1.37\|1371473\|33\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1371473-1371505	33	CP045557	Citrobacter sp. S39 plasmid pS39-2, complete sequence	106690-106722	9	0.727
NZ_CP010311_1	1.41\|1371737\|34\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1371737-1371770	34	NZ_CP053956	Bacillus tropicus strain FDAARGOS_782 plasmid unnamed1	12848-12881	9	0.735
NZ_CP010311_1	1.41\|1371737\|34\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1371737-1371770	34	NZ_CP009627	Bacillus cereus ATCC 4342 plasmid pBGM, complete sequence	13186-13219	9	0.735
NZ_CP010311_1	1.41\|1371737\|34\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1371737-1371770	34	NZ_CP031945	Nostoc sphaeroides strain Kutzing En plasmid p4, complete sequence	4136-4169	9	0.735
NZ_CP010311_1	1.42\|1371803\|34\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1371803-1371836	34	JX100810	Caulobacter phage CcrColossus, complete genome	129385-129418	9	0.735
NZ_CP010311_1	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	NZ_CP013345	Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence	20167-20198	9	0.719
NZ_CP010311_1	1.50\|1372325\|33\|NZ_CP010311\|CRISPRCasFinder,CRT	1372325-1372357	33	MK882885	Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence	24178-24210	9	0.727
NZ_CP010311_1	1.50\|1372325\|33\|NZ_CP010311\|CRISPRCasFinder,CRT	1372325-1372357	33	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	33413-33445	9	0.727
NZ_CP010311_1	1.50\|1372325\|33\|NZ_CP010311\|CRISPRCasFinder,CRT	1372325-1372357	33	NZ_CP020561	Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence	8253-8285	9	0.727
NZ_CP010311_1	1.50\|1372325\|33\|NZ_CP010311\|CRISPRCasFinder,CRT	1372325-1372357	33	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	25468-25500	9	0.727
NZ_CP010311_1	1.50\|1372325\|33\|NZ_CP010311\|CRISPRCasFinder,CRT	1372325-1372357	33	NZ_CP010419	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50d, complete sequence	18409-18441	9	0.727
NZ_CP010311_1	1.47\|1372130\|34\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372130-1372163	34	MN693068	Marine virus AFVG_25M252, complete genome	26709-26742	11	0.676
NZ_CP010311_1	1.47\|1372130\|34\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372130-1372163	34	MN693337	Marine virus AFVG_25M253, complete genome	6146-6179	11	0.676
NZ_CP010311_1	1.3\|1369234\|34\|NZ_CP010311\|PILER-CR,CRISPRCasFinder,CRT	1369234-1369267	34	NZ_CP040642	Agrobacterium sp. T29 plasmid unnamed2, complete sequence	101228-101261	12	0.647

1. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 6, identity: 0.812

gccgatatcgcgaaagaccggcgcgaggttgc-	CRISPR spacer
ggcgatctcgcgaaagaccggcccga-gcagcg	Protospacer
* **** *************** *** *. **

2. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 6, identity: 0.812

gccgatatcgcgaaagaccggcgcgaggttgc-	CRISPR spacer
ggcgatttcgcgaaagaccggcccga-gcagcg	Protospacer
* **** *************** *** *. **

3. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 6, identity: 0.812

gccgatatcgcgaaagaccggcgcgaggttgc-	CRISPR spacer
ggcgatctcgcgaaagaccggcccga-gcagcg	Protospacer
* **** *************** *** *. **

4. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 6, identity: 0.812

gccgatatcgcgaaagaccggcgcgaggttgc-	CRISPR spacer
ggcgatttcgcgaaagaccggcccga-gcagcg	Protospacer
* **** *************** *** *. **

5. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

gccgatatcgcgaaagaccggcgcgaggttgc-	CRISPR spacer
ggcgatctcgcgaaagaccggcccga-gcagcg	Protospacer
* **** *************** *** *. **

6. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 6, identity: 0.812

gccgatatcgcgaaagaccggcgcgaggttgc-	CRISPR spacer
ggcgatttcgcgaaagaccggcccga-gcagcg	Protospacer
* **** *************** *** *. **

7. spacer 1.2|1369169|33|NZ_CP010311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 7, identity: 0.788

atgggtgaaccgcaagaggtcgcttatacagac	CRISPR spacer
ttgggtgaaccgcaagacgttgcttctttagtc	Protospacer
 **************** **.**** * .** *

8. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 7, identity: 0.781

gccgatatcgcgaaagaccggcgcgaggttgc-	CRISPR spacer
cgcgatctcgcgaaagaccggcccga-gcagcg	Protospacer
  **** *************** *** *. **

9. spacer 1.3|1369234|34|NZ_CP010311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

cggtctttacgatgtagagaccggcgagaaggtc	CRISPR spacer
cgtttacgacgatgtagagcccagcgagaaggtg	Protospacer
** *. . *********** **.**********

10. spacer 1.40|1371670|35|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to EF057797 (Vibrio phage VP882, complete genome) position: , mismatch: 8, identity: 0.771

tgccgcttgcttaaaaacaacgtcgtcggccacgc	CRISPR spacer
taccagttgctgaaaaacaacgtcatcggccccaa	Protospacer
*.**. ***** ************.****** *.

11. spacer 1.40|1371670|35|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

tgccgcttgcttaaaaacaacgtcgtcggccacgc	CRISPR spacer
acccgctggctgaaaaacaacgtcgtcatcagcgc	Protospacer
  ***** *** ***************. * .***

12. spacer 1.45|1372000|33|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NC_015178 (Acidiphilium multivorum AIU301 plasmid pACMV1, complete sequence) position: , mismatch: 8, identity: 0.758

atctcgtttatgatctgctcggctgaggcgagc	CRISPR spacer
gaattgctcatgatctgctcggctgcggcgtgc	Protospacer
.  *.*.*.**************** **** **

13. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018231 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3) position: , mismatch: 8, identity: 0.75

gccgatatc-gcgaaagaccggcgcgaggttgc	CRISPR spacer
-tggacgccagcgaaagaccgatgcgaggttgc	Protospacer
 . **...* ***********..**********

14. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gccgatatc-gcgaaagaccggcgcgaggttgc	CRISPR spacer
-tggacgccagcgaaagaccgatgcgaggttgc	Protospacer
 . **...* ***********..**********

15. spacer 1.50|1372325|33|NZ_CP010311|CRISPRCasFinder,CRT matches to NZ_CP045177 (Streptomyces tsukubensis strain AT3 plasmid pST1, complete sequence) position: , mismatch: 8, identity: 0.758

cccgcaaccaggtcgaaatcgagctcgccgaac	CRISPR spacer
cgcgccaccaggtcgaaatcgacctcggggcgg	Protospacer
* *** **************** ****  * .

16. spacer 1.50|1372325|33|NZ_CP010311|CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

cccgcaaccaggtcgaaatcgagctcgccgaac	CRISPR spacer
tcggccgccagctcgaaatcgaactcgccgaca	Protospacer
.* ** .**** **********.********

17. spacer 1.3|1369234|34|NZ_CP010311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014169 (Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

cggtctttacgatgtagagaccggcgagaaggtc	CRISPR spacer
gcgtctttccgatgtcgagaccggcggcgaggat	Protospacer
  ****** ****** **********. .*** .

18. spacer 1.37|1371473|33|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to CP045557 (Citrobacter sp. S39 plasmid pS39-2, complete sequence) position: , mismatch: 9, identity: 0.727

atagtaaaatagatgaaatcaaacatcgtcctt	CRISPR spacer
aatttcgtatacatgaaatcaaacatcttcctc	Protospacer
*   * . *** *************** ****.

19. spacer 1.41|1371737|34|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053956 (Bacillus tropicus strain FDAARGOS_782 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tataaacaaccgttctttcttcgtttttgctgtc	CRISPR spacer
attaaccatccgttctttcttcgttttgccttca	Protospacer
  *** ** ******************  ** .

20. spacer 1.41|1371737|34|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009627 (Bacillus cereus ATCC 4342 plasmid pBGM, complete sequence) position: , mismatch: 9, identity: 0.735

tataaacaaccgttctttcttcgtttttgctgtc	CRISPR spacer
attaaccatccgttctttcttcgttttgccttca	Protospacer
  *** ** ******************  ** .

21. spacer 1.41|1371737|34|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031945 (Nostoc sphaeroides strain Kutzing En plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.735

tataaacaaccgttctttcttcgtttttgctgtc	CRISPR spacer
ttgaacaaacctttctttcttcgtttctgctaga	Protospacer
*  **  **** **************.****.

22. spacer 1.42|1371803|34|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to JX100810 (Caulobacter phage CcrColossus, complete genome) position: , mismatch: 9, identity: 0.735

gcccgacaaaacaccctcgatgaacagctcgaac	CRISPR spacer
caccaagtccacaccttcgatgaacaactcgaac	Protospacer
  **.*    *****.**********.*******

23. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gccgatatcgcgaaagaccggcgcgaggttgc	CRISPR spacer
cttcatatcgcgaaggacctgcgcgagggcac	Protospacer
 .. **********.**** ******** ..*

24. spacer 1.50|1372325|33|NZ_CP010311|CRISPRCasFinder,CRT matches to MK882885 (Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence) position: , mismatch: 9, identity: 0.727

cccgcaaccaggtcgaaatcgagctcgccgaac	CRISPR spacer
atcagcaccaggtcgatatcgacctcgccgata	Protospacer
 .*.  ********** ***** ********

25. spacer 1.50|1372325|33|NZ_CP010311|CRISPRCasFinder,CRT matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

cccgcaaccaggtcgaaatcgagctcgccgaac	CRISPR spacer
atcagcaccaggtcgatatcgacctcgccgata	Protospacer
 .*.  ********** ***** ********

26. spacer 1.50|1372325|33|NZ_CP010311|CRISPRCasFinder,CRT matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 9, identity: 0.727

cccgcaaccaggtcgaaatcgagctcgccgaac	CRISPR spacer
atcagcaccaggtcgatatcgacctcgccgata	Protospacer
 .*.  ********** ***** ********

27. spacer 1.50|1372325|33|NZ_CP010311|CRISPRCasFinder,CRT matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 9, identity: 0.727

cccgcaaccaggtcgaaatcgagctcgccgaac	CRISPR spacer
atcagcaccaggtcgatatcgacctcgccgata	Protospacer
 .*.  ********** ***** ********

28. spacer 1.50|1372325|33|NZ_CP010311|CRISPRCasFinder,CRT matches to NZ_CP010419 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50d, complete sequence) position: , mismatch: 9, identity: 0.727

cccgcaaccaggtcgaaatcgagctcgccgaac	CRISPR spacer
gccgcaaccgggtcgatatcgagcttcgcagtc	Protospacer
 ********.****** ********.  *.. *

29. spacer 1.47|1372130|34|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to MN693068 (Marine virus AFVG_25M252, complete genome) position: , mismatch: 11, identity: 0.676

gtccacgaccacaaaccctttcaaggaaaagggc	CRISPR spacer
caaaacgaccaccaaccatttcaaggaatctatc	Protospacer
    ******** **** **********   . *

30. spacer 1.47|1372130|34|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to MN693337 (Marine virus AFVG_25M253, complete genome) position: , mismatch: 11, identity: 0.676

gtccacgaccacaaaccctttcaaggaaaagggc	CRISPR spacer
caaaacgaccaccaaccatttcaaggaatctatc	Protospacer
    ******** **** **********   . *

31. spacer 1.3|1369234|34|NZ_CP010311|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040642 (Agrobacterium sp. T29 plasmid unnamed2, complete sequence) position: , mismatch: 12, identity: 0.647

cggtctttacgatgtagagaccggcgagaaggtc	CRISPR spacer
atatctttacgaggaagagaccggcgacttctat	Protospacer
  .********* * ************      .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1149067 : 1208141

Sulfolobus_monocaudavirus(14.29%)

integrase,transposase,plate

attL 1185265:1185313|attR 1192159:1192207

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040198735.1\|1149067_1149505_+\|transposase	IS200/IS605 family transposase	W0UUZ0	Sulfolobus_monocaudavirus	8.3e-18	36.2
WP_052464579.1\|1150028_1150829_+	cation-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.0e-37	38.2
WP_040199547.1\|1151049_1151892_+	c-type cytochrome	NA	NA	NA	NA
WP_040199548.1\|1151803_1152202_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA
WP_040199549.1\|1152222_1152729_+	hypothetical protein	NA	NA	NA	NA
WP_040199550.1\|1152844_1155148_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.0e-95	36.7
WP_040199551.1\|1155308_1155524_-	hypothetical protein	NA	NA	NA	NA
WP_040199552.1\|1155962_1156346_+	hypothetical protein	NA	NA	NA	NA
WP_040199553.1\|1156393_1157485_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_040199554.1\|1158050_1158917_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_040199555.1\|1159173_1160013_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_040199558.1\|1160307_1160805_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_040199559.1\|1160875_1161712_+	hypothetical protein	NA	NA	NA	NA
WP_052464583.1\|1161926_1162106_+	hypothetical protein	NA	NA	NA	NA
WP_040199560.1\|1162160_1162994_-	HesA/MoeB/ThiF family protein	NA	NA	NA	NA
WP_040202129.1\|1162995_1163220_-	MoaD/ThiS family protein	NA	NA	NA	NA
WP_040199561.1\|1163309_1165040_-	aldehyde ferredoxin oxidoreductase	NA	NA	NA	NA
WP_040199563.1\|1165287_1166451_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_040199564.1\|1167196_1168012_+	solute-binding protein	NA	NA	NA	NA
WP_040199565.1\|1168028_1168715_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_040199566.1\|1168719_1169418_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.6e-17	28.9
WP_040199568.1\|1169414_1170629_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_040202130.1\|1170739_1171888_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_040199569.1\|1171927_1173589_+	GAF domain-containing protein	NA	NA	NA	NA
WP_040199570.1\|1173673_1175197_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_040199571.1\|1175208_1176537_+	radical SAM/SPASM family putative metalloenzyme maturase	NA	NA	NA	NA
WP_040199572.1\|1176572_1176881_+	MoaD/ThiS family protein	NA	NA	NA	NA
WP_040199574.1\|1177112_1177325_-	hypothetical protein	NA	NA	NA	NA
WP_040199575.1\|1177713_1178940_+	MFS transporter	NA	NA	NA	NA
WP_040199576.1\|1178968_1179679_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-31	38.2
WP_040199578.1\|1179723_1180881_-	ABC transporter permease	NA	NA	NA	NA
WP_052465056.1\|1180895_1181333_-	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_040199580.1\|1181730_1181922_-	hypothetical protein	NA	NA	NA	NA
WP_040199582.1\|1182428_1183556_+	DUF362 domain-containing protein	NA	NA	NA	NA
WP_040199583.1\|1183953_1184202_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_040199585.1\|1184208_1184652_+	PIN domain-containing protein	NA	NA	NA	NA
1185265:1185313	attL	NA	NA	NA	NA
WP_040199587.1\|1185478_1186741_+\|integrase	tyrosine-type recombinase/integrase	Q9ZXG4	Shigella_phage	6.8e-12	25.8
WP_040199588.1\|1186825_1187440_+	hypothetical protein	NA	NA	NA	NA
WP_052464585.1\|1187527_1187758_+	hypothetical protein	NA	NA	NA	NA
WP_040199589.1\|1187760_1187994_+	hypothetical protein	NA	NA	NA	NA
WP_052464588.1\|1187990_1190357_+	AAA family ATPase	A0A193GYG9	Enterobacter_phage	1.2e-25	34.6
WP_040199592.1\|1192751_1193351_+	hypothetical protein	NA	NA	NA	NA
1192159:1192207	attR	NA	NA	NA	NA
WP_052464590.1\|1193350_1193812_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_040199593.1\|1193813_1195157_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_040199594.1\|1195160_1195919_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_040199595.1\|1195915_1199539_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_040199596.1\|1199550_1200570_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_040199598.1\|1200566_1202135_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_040199599.1\|1202207_1202720_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_040199600.1\|1202733_1204269_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_040199601.1\|1204495_1204981_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_052464591.1\|1205069_1205486_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_040199602.1\|1205478_1207212_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_040199604.1\|1207175_1208141_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

1415963 : 1457293

Brucella_phage(16.67%)

tRNA,integrase,transposase

attL 1441128:1441187|attR 1459963:1464872

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040199830.1\|1415963_1416986_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.8e-75	46.2
WP_040199832.1\|1417022_1417526_+	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_040199834.1\|1417598_1418384_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_040199835.1\|1418442_1419318_+	hypothetical protein	NA	NA	NA	NA
WP_084211805.1\|1419516_1424283_+	hypothetical protein	NA	NA	NA	NA
WP_040199836.1\|1424348_1424930_+	flavin reductase family protein	NA	NA	NA	NA
WP_040199837.1\|1425078_1425882_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.4e-49	39.2
WP_040199840.1\|1426042_1426903_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_052464656.1\|1426943_1428218_+	amidohydrolase family protein	NA	NA	NA	NA
WP_158414048.1\|1428535_1428712_+	hypothetical protein	NA	NA	NA	NA
WP_158414049.1\|1428897_1429245_+	hypothetical protein	NA	NA	NA	NA
WP_040199843.1\|1429313_1430501_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_040199844.1\|1430497_1433671_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_084211809.1\|1433663_1435073_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_158414050.1\|1436204_1436735_-	hypothetical protein	NA	NA	NA	NA
WP_040202190.1\|1436812_1437109_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_040199847.1\|1437108_1437330_-	addiction module protein	NA	NA	NA	NA
WP_144401967.1\|1437459_1439017_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_040199849.1\|1439102_1439453_-	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	1.6e-16	51.7
WP_040199850.1\|1439449_1439749_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.4e-24	55.8
WP_040199851.1\|1439815_1440139_-	hypothetical protein	NA	NA	NA	NA
WP_040199852.1\|1440122_1440419_-	toxin	NA	NA	NA	NA
WP_084211811.1\|1440486_1441203_-	HNH endonuclease	F5B475	Synechococcus_phage	1.6e-05	50.0
1441128:1441187	attL	NA	NA	NA	NA
WP_040202192.1\|1441283_1442600_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	5.4e-129	52.9
WP_040199854.1\|1442891_1443137_-	hypothetical protein	NA	NA	NA	NA
WP_040199855.1\|1443148_1443934_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.8e-32	38.6
WP_084211813.1\|1443923_1445375_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_052464662.1\|1445624_1446002_-	hypothetical protein	NA	NA	NA	NA
WP_144401968.1\|1446096_1446534_-	hypothetical protein	NA	NA	NA	NA
WP_040199847.1\|1447793_1448015_-	addiction module protein	NA	NA	NA	NA
WP_052464664.1\|1448115_1448742_-	HNH endonuclease	F5B475	Synechococcus_phage	1.4e-05	50.0
WP_052464648.1\|1448986_1449868_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	3.0e-30	33.8
WP_040199773.1\|1449860_1450964_+\|transposase	transposase	NA	NA	NA	NA
WP_084211815.1\|1451280_1451856_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_052464666.1\|1451982_1452546_-	hypothetical protein	NA	NA	NA	NA
WP_040199862.1\|1452634_1453561_-	hypothetical protein	A0A1D8EX18	Mycobacterium_phage	1.2e-53	42.3
WP_084211817.1\|1453538_1454603_-	site-specific DNA-methyltransferase	A0A1D8EX39	Mycobacterium_phage	4.1e-95	47.2
WP_040199863.1\|1454767_1455187_-	hypothetical protein	NA	NA	NA	NA
WP_040199864.1\|1455183_1455711_-	hypothetical protein	NA	NA	NA	NA
WP_040199866.1\|1455723_1456140_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_052464648.1\|1456411_1457293_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	3.0e-30	33.8
1459963:1464872	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1673342 : 1685988

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040200067.1\|1673342_1674080_+	3-oxoacyl-[acyl-carrier-protein] reductase	A0A0N9R355	Chrysochromulina_ericina_virus	3.2e-14	27.4
WP_040200068.1\|1674147_1674381_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.4e-10	47.9
WP_040200069.1\|1674505_1675738_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_040200070.1\|1675758_1676226_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_040200072.1\|1676298_1677549_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.4e-94	52.2
WP_040200074.1\|1677561_1678038_+	cytidine deaminase	A0A1D8ESY8	Mycobacterium_phage	7.9e-22	41.7
WP_040200075.1\|1678034_1678505_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_040200077.1\|1678586_1679702_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2I2L4R9	Orpheovirus	7.8e-44	34.4
WP_040200078.1\|1679682_1680333_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.0e-32	36.8
WP_040200079.1\|1680366_1681572_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.8e-100	49.6
WP_040200080.1\|1681603_1682068_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.6e-38	55.0
WP_084211852.1\|1682071_1682602_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_040200081.1\|1682625_1683936_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_084211854.1\|1684056_1685988_-	AMP-binding protein	A0A1V0SBX8	Catovirus	5.7e-34	26.4

DBSCAN-SWA_4

1694060 : 1699481

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040200094.1\|1694060_1694819_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.0e-55	45.5
WP_040200096.1\|1694913_1695567_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.4e-31	48.2
WP_144401981.1\|1695572_1696166_+	DedA family protein	NA	NA	NA	NA
WP_158414059.1\|1696238_1697006_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_040200101.1\|1697063_1698098_+	sigma-70 family RNA polymerase sigma factor	A0A2I7SAT0	Vibrio_phage	2.2e-37	36.2
WP_040200102.1\|1698153_1698672_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.6e-30	41.3
WP_040200103.1\|1698899_1699187_-	HigA family addiction module antidote protein	I6ZVM3	Aeromonas_phage	4.9e-11	42.9
WP_040200104.1\|1699202_1699481_-	hypothetical protein	A0A0M3LQB1	Mannheimia_phage	3.3e-12	35.9

DBSCAN-SWA_5

1996578 : 2046796

Bodo_saltans_virus(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040199265.1\|1996578_1997259_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_144401939.1\|1997300_1998368_-	DUF4338 domain-containing protein	NA	NA	NA	NA
WP_052464355.1\|1998686_2000216_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_052464357.1\|2000234_2001119_-	DUF4338 domain-containing protein	NA	NA	NA	NA
WP_052464355.1\|2001468_2002998_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_052464357.1\|2003016_2003901_-	DUF4338 domain-containing protein	NA	NA	NA	NA
WP_052464355.1\|2004250_2005780_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_052464357.1\|2005798_2006683_-	DUF4338 domain-containing protein	NA	NA	NA	NA
WP_040200412.1\|2006977_2009365_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	6.5e-173	37.1
WP_040200414.1\|2009565_2011047_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_040200415.1\|2011043_2011424_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_040200416.1\|2011453_2011813_+	hypothetical protein	NA	NA	NA	NA
WP_040200417.1\|2011809_2012124_+	ATP synthase subunit I	NA	NA	NA	NA
WP_040200418.1\|2012150_2012873_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_040200419.1\|2012865_2013147_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_040200421.1\|2013148_2014000_+	hypothetical protein	NA	NA	NA	NA
WP_040200422.1\|2014004_2015558_+	alternate F1F0 ATPase, F1 subunit alpha	NA	NA	NA	NA
WP_040200423.1\|2015585_2016476_+	hypothetical protein	NA	NA	NA	NA
WP_040202347.1\|2016532_2018125_+	trehalose-phosphatase	NA	NA	NA	NA
WP_040200424.1\|2018124_2020533_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_052464834.1\|2020691_2021309_-	nicotinamidase	A0A2H4UW48	Bodo_saltans_virus	7.7e-09	24.4
WP_040200425.1\|2021520_2023251_+	DNA polymerase/3'-5' exonuclease PolX	A0A2K9LAJ5	Tupanvirus	1.8e-18	25.8
WP_040200426.1\|2023456_2024224_-	hypothetical protein	A0A1J0FA18	Only_Syngen_Nebraska_virus	7.0e-12	25.6
WP_040200427.1\|2024267_2025194_-	DUF1848 domain-containing protein	NA	NA	NA	NA
WP_040200428.1\|2025196_2025934_-	single-strand selective monofunctional uracil-DNA glycosylase	NA	NA	NA	NA
WP_040202349.1\|2026141_2027089_-\|transposase	IS1595-like element ISGes2 family transposase	NA	NA	NA	NA
WP_052464836.1\|2027236_2028412_+	DUF4382 domain-containing protein	NA	NA	NA	NA
WP_040200429.1\|2028565_2028802_-	hypothetical protein	NA	NA	NA	NA
WP_084211921.1\|2028937_2029192_+	hypothetical protein	NA	NA	NA	NA
WP_144402077.1\|2029428_2029806_-	YbgC/FadM family acyl-CoA thioesterase	NA	NA	NA	NA
WP_040200431.1\|2029907_2030636_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_084212210.1\|2030698_2031133_-	nitrous oxide-stimulated promoter family protein	NA	NA	NA	NA
WP_040200435.1\|2031158_2031839_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_040200437.1\|2031871_2032462_+	chemotaxis protein CheD	NA	NA	NA	NA
WP_040200439.1\|2032481_2033039_-	orotate phosphoribosyltransferase	E3SNS3	Prochlorococcus_phage	4.6e-21	38.2
WP_040200441.1\|2033155_2034562_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.8e-51	32.6
WP_040200444.1\|2034632_2035463_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_040200446.1\|2035467_2038458_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
WP_040200448.1\|2038551_2039850_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	8.5e-18	27.0
WP_040200450.1\|2039948_2040719_-	MBL fold metallo-hydrolase	A0A2I7SDH3	Paenibacillus_phage	5.6e-33	34.9
WP_040200452.1\|2041102_2042104_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_040200454.1\|2042209_2043400_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_040200456.1\|2043547_2044306_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_040200458.1\|2044385_2044763_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_040200460.1\|2045247_2046063_-	DUF169 domain-containing protein	NA	NA	NA	NA
WP_040198735.1\|2046358_2046796_-\|transposase	IS200/IS605 family transposase	W0UUZ0	Sulfolobus_monocaudavirus	8.3e-18	36.2

DBSCAN-SWA_6

2063132 : 2126694

Liberibacter_phage(12.5%)

integrase,transposase

attL 2114582:2114597|attR 2127209:2127224

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040202358.1\|2063132_2063726_-\|transposase	transposase	NA	NA	NA	NA
WP_040200482.1\|2063797_2065012_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_040200483.1\|2065008_2067138_-	type I restriction-modification system subunit M	A0A220A2U4	Liberibacter_phage	4.3e-35	30.8
WP_040200484.1\|2067140_2067419_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_052464840.1\|2068088_2068847_-	DUF1847 domain-containing protein	NA	NA	NA	NA
WP_040200486.1\|2068890_2069706_-	glutaconate CoA-transferase	NA	NA	NA	NA
WP_040200487.1\|2069707_2070676_-	CoA-transferase	NA	NA	NA	NA
WP_040200489.1\|2070697_2071858_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_040200491.1\|2071973_2072702_-	epoxyqueuosine reductase	NA	NA	NA	NA
WP_040200493.1\|2072733_2073258_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	C7F482	Cyanophage	7.9e-23	39.3
WP_040200495.1\|2073271_2074186_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_040200496.1\|2074211_2074988_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_040200497.1\|2074991_2076980_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_040200498.1\|2077064_2078204_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_040200499.1\|2078233_2079016_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_040200500.1\|2079026_2079875_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
WP_040200501.1\|2079891_2081070_-	thiolase family protein	NA	NA	NA	NA
WP_040200502.1\|2081244_2082411_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_040200503.1\|2082423_2082957_-	nitroreductase	A0A1V0E011	Clostridioides_phage	5.8e-13	30.8
WP_052464841.1\|2083145_2086424_-	methylmalonyl-CoA mutase family protein	NA	NA	NA	NA
WP_040200504.1\|2086506_2087052_-	hypothetical protein	NA	NA	NA	NA
WP_040200506.1\|2087125_2087602_-	universal stress protein	NA	NA	NA	NA
WP_040200507.1\|2087641_2088949_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_040200508.1\|2088933_2089494_-	TRAP transporter small permease	NA	NA	NA	NA
WP_040200509.1\|2089490_2090489_-	hypothetical protein	NA	NA	NA	NA
WP_040200511.1\|2090581_2092141_-	acetyl-CoA hydrolase	NA	NA	NA	NA
WP_040200512.1\|2092620_2093055_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_040200514.1\|2093467_2093737_-	hypothetical protein	NA	NA	NA	NA
WP_040200516.1\|2093737_2093932_-	hypothetical protein	NA	NA	NA	NA
WP_084211926.1\|2094130_2094421_+	chloride channel protein	NA	NA	NA	NA
WP_040200519.1\|2094639_2095230_+	LemA family protein	NA	NA	NA	NA
WP_040200521.1\|2095232_2095943_+	hypothetical protein	NA	NA	NA	NA
WP_040200522.1\|2095991_2096627_+	hypothetical protein	NA	NA	NA	NA
WP_040200524.1\|2096785_2097238_+	ferritin family protein	NA	NA	NA	NA
WP_040200526.1\|2099035_2099374_-	hypothetical protein	NA	NA	NA	NA
WP_040200527.1\|2099452_2099917_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_040200528.1\|2100227_2103284_-	tetrathionate reductase subunit TtrA	NA	NA	NA	NA
WP_040200529.1\|2103280_2104462_-	polysulfide reductase NrfD	NA	NA	NA	NA
WP_084212211.1\|2104473_2105199_-	4Fe-4S dicluster domain-containing protein	A0A077SL61	Escherichia_phage	4.7e-26	34.6
WP_040202365.1\|2105597_2107487_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_040200531.1\|2107489_2108833_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_040200532.1\|2109521_2109728_-	hypothetical protein	NA	NA	NA	NA
WP_040200534.1\|2110566_2111220_-	flavodoxin family protein	NA	NA	NA	NA
WP_040200537.1\|2112122_2113352_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_040200539.1\|2113348_2113948_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_040200541.1\|2113963_2114815_-	AAA family ATPase	NA	NA	NA	NA
2114582:2114597	attL	NA	NA	NA	NA
WP_040200542.1\|2114840_2116772_-	anaerobic carbon-monoxide dehydrogenase catalytic subunit	NA	NA	NA	NA
WP_040200543.1\|2116904_2117609_-	PAS domain-containing protein	NA	NA	NA	NA
WP_040200544.1\|2118120_2118420_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_040200545.1\|2118406_2118757_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	1.3e-08	47.8
WP_144401996.1\|2119336_2120158_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-28	32.5
WP_158414071.1\|2120165_2120918_-\|transposase	transposase	NA	NA	NA	NA
WP_040200548.1\|2120965_2121298_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.8e-09	38.9
WP_084211813.1\|2121589_2123041_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_040199855.1\|2123030_2123816_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.8e-32	38.6
WP_040199854.1\|2123827_2124073_+	hypothetical protein	NA	NA	NA	NA
WP_040200549.1\|2124129_2124333_-	hypothetical protein	NA	NA	NA	NA
WP_052464846.1\|2124400_2125198_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_040200550.1\|2125317_2126694_+\|transposase	transposase	NA	NA	NA	NA
2127209:2127224	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2142437 : 2189294

uncultured_Mediterranean_phage(23.08%)

plate,tail,integrase,portal,transposase

attL 2172375:2172392|attR 2190484:2190501

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040199265.1\|2142437_2143118_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_144401929.1\|2143159_2144227_-	DUF4338 domain-containing protein	NA	NA	NA	NA
WP_040202369.1\|2144393_2144747_+	four helix bundle protein	NA	NA	NA	NA
WP_040200556.1\|2144775_2145555_-	glucosamine 6-phosphate synthetase	A0A1B1IUF7	uncultured_Mediterranean_phage	1.3e-53	41.4
WP_040200557.1\|2145539_2146061_-	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_040200558.1\|2146072_2147029_-	amidoligase	A0A1B1IUD7	uncultured_Mediterranean_phage	8.0e-106	60.7
WP_028588143.1\|2147278_2147536_-	hypothetical protein	NA	NA	NA	NA
WP_040200560.1\|2147548_2151097_-	DUF4815 domain-containing protein	F8WQ05	Bacillus_phage	2.5e-72	25.8
WP_040200561.1\|2151112_2151646_-	hypothetical protein	NA	NA	NA	NA
WP_040200563.1\|2151658_2152120_-	hypothetical protein	NA	NA	NA	NA
WP_040200564.1\|2152242_2153232_-	hypothetical protein	NA	NA	NA	NA
WP_040200565.1\|2153242_2153836_-	hypothetical protein	NA	NA	NA	NA
WP_040200566.1\|2153846_2155421_-\|tail	tail protein	NA	NA	NA	NA
WP_040200567.1\|2155420_2156830_-\|plate	baseplate J protein	A0A1Q1PVP2	Phage_DP-2017a	3.0e-40	25.8
WP_040200569.1\|2156929_2157847_-	GPW/gp25 family protein	M4SKQ1	Cyanophage	1.8e-06	37.6
WP_040200570.1\|2158748_2159759_-	hypothetical protein	NA	NA	NA	NA
WP_040200572.1\|2159755_2160064_-	hypothetical protein	NA	NA	NA	NA
WP_011366988.1\|2160074_2160338_-	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	1.9e-09	67.9
WP_015721232.1\|2160334_2160709_-	hypothetical protein	NA	NA	NA	NA
WP_011700611.1\|2160721_2161771_-	hypothetical protein	NA	NA	NA	NA
WP_040200602.1\|2161763_2162183_-	DUF1353 domain-containing protein	A0A2H4JDM4	uncultured_Caudovirales_phage	6.3e-15	44.4
WP_040200603.1\|2162179_2162554_-	DUF882 domain-containing protein	I7FWL0	Pectobacterium_phage	9.3e-18	45.0
WP_040200604.1\|2162546_2163830_-	phage late control D family protein	NA	NA	NA	NA
WP_040200605.1\|2163896_2164187_-	hypothetical protein	NA	NA	NA	NA
WP_011366981.1\|2164183_2164654_-	hypothetical protein	NA	NA	NA	NA
WP_028588324.1\|2164657_2164969_-	hypothetical protein	NA	NA	NA	NA
WP_040200607.1\|2164977_2168613_-\|tail	phage tail tape measure protein	H7BVM4	unidentified_phage	3.5e-77	40.0
WP_040200608.1\|2168756_2169434_-	hypothetical protein	A0A127AX46	Bacillus_phage	2.2e-09	27.5
WP_015721240.1\|2169449_2169911_-\|tail	phage tail protein	NA	NA	NA	NA
WP_040200609.1\|2169926_2171456_-\|tail	tail protein	A0A127AW39	Bacillus_phage	5.2e-75	35.6
WP_040200610.1\|2171458_2171716_-	hypothetical protein	NA	NA	NA	NA
WP_040200611.1\|2171728_2172352_-	hypothetical protein	NA	NA	NA	NA
2172375:2172392	attL	NA	NA	NA	NA
WP_040200613.1\|2172411_2172897_-	hypothetical protein	NA	NA	NA	NA
WP_040200614.1\|2172886_2173246_-	hypothetical protein	NA	NA	NA	NA
WP_040200615.1\|2173232_2173697_-	hypothetical protein	NA	NA	NA	NA
WP_040200616.1\|2173683_2174118_-	hypothetical protein	NA	NA	NA	NA
WP_040200617.1\|2174137_2175001_-	hypothetical protein	NA	NA	NA	NA
WP_027182227.1\|2175019_2175382_-	hypothetical protein	NA	NA	NA	NA
WP_040200620.1\|2175394_2177803_-	DNA methyltransferase	NA	NA	NA	NA
WP_040202370.1\|2178031_2178241_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_084211932.1\|2178262_2180002_+	N-6 DNA methylase	R4TFP1	Halovirus	8.5e-21	23.9
WP_040200621.1\|2180004_2180745_+	restriction endonuclease PaeR7I	NA	NA	NA	NA
WP_040202374.1\|2182310_2183810_-\|portal	phage portal protein	NA	NA	NA	NA
WP_040200622.1\|2184190_2185501_+	ATP-binding protein	NA	NA	NA	NA
WP_040200624.1\|2185585_2187109_-	hypothetical protein	NA	NA	NA	NA
WP_011366961.1\|2187108_2187387_-	hypothetical protein	NA	NA	NA	NA
WP_029917946.1\|2187383_2187656_-	hypothetical protein	NA	NA	NA	NA
WP_011366959.1\|2187796_2187991_+	hypothetical protein	NA	NA	NA	NA
WP_040200626.1\|2188024_2188399_+	hypothetical protein	NA	NA	NA	NA
WP_040200627.1\|2188379_2189294_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	3.3e-16	28.1
2190484:2190501	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3350814 : 3441927

107

Pseudomonas_phage(24.32%)

transposase,tRNA,head,tail,integrase,plate

attL 3399397:3399444|attR 3449057:3449104

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040201683.1\|3350814_3351579_+\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_144402089.1\|3351584_3352334_+	TSUP family transporter	NA	NA	NA	NA
WP_040201685.1\|3352577_3353279_+	JAB domain-containing protein	NA	NA	NA	NA
WP_052465005.1\|3353399_3354137_+	DsbC family protein	NA	NA	NA	NA
WP_040201686.1\|3354133_3356542_+	U32 family peptidase	Q6DW11	Phage_TP	1.1e-21	29.2
WP_040201687.1\|3356538_3357621_-	aminofutalosine synthase MqnE	NA	NA	NA	NA
WP_040201688.1\|3357917_3358403_-	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA
WP_040201689.1\|3358438_3359221_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_040201690.1\|3359357_3359849_-	chemotaxis protein CheD	NA	NA	NA	NA
WP_040201691.1\|3359845_3360466_-	chemotaxis protein CheC	NA	NA	NA	NA
WP_040201692.1\|3360462_3362448_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_040201694.1\|3362470_3362833_-	response regulator	NA	NA	NA	NA
WP_040201695.1\|3362813_3363287_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_040201696.1\|3363288_3364560_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	8.9e-12	36.8
WP_040201697.1\|3364592_3365480_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_040201698.1\|3365628_3366612_-	thiamine-phosphate kinase	NA	NA	NA	NA
WP_040201699.1\|3366608_3368957_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	9.9e-174	43.8
WP_040201700.1\|3369138_3370734_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.0e-154	54.3
WP_084212165.1\|3370920_3371442_-	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA
WP_040201701.1\|3371445_3372096_-	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA
WP_040201702.1\|3372110_3373823_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
WP_040202705.1\|3373826_3374927_-	hydrogenase small subunit	NA	NA	NA	NA
WP_052465006.1\|3375355_3377119_-	VCBS repeat-containing protein	NA	NA	NA	NA
WP_040201705.1\|3377320_3378709_-	hypothetical protein	NA	NA	NA	NA
WP_158414104.1\|3378788_3378935_-	hypothetical protein	NA	NA	NA	NA
WP_158414105.1\|3379228_3379738_-	redoxin family protein	NA	NA	NA	NA
WP_040201708.1\|3380045_3380453_-	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_052465097.1\|3380600_3380948_-	GxxExxY protein	A0A0P0YNF4	Yellowstone_lake_phycodnavirus	3.6e-08	36.4
WP_084212167.1\|3381040_3382144_-	methylmalonyl Co-A mutase-associated GTPase MeaB	NA	NA	NA	NA
WP_040201710.1\|3382037_3384182_-	methylmalonyl-CoA mutase	NA	NA	NA	NA
WP_040201711.1\|3384428_3384989_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158414106.1\|3385306_3386416_+	hypothetical protein	NA	NA	NA	NA
WP_052465008.1\|3386488_3387232_+	futalosine hydrolase	NA	NA	NA	NA
WP_040201713.1\|3387228_3388062_+	1,4-dihydroxy-6-naphthoate synthase	NA	NA	NA	NA
WP_040201714.1\|3388480_3388696_+	hypothetical protein	NA	NA	NA	NA
WP_040201716.1\|3388845_3391734_-	biotin carboxylase	NA	NA	NA	NA
WP_040201717.1\|3391795_3393520_-	acetyl-CoA carboxylase	NA	NA	NA	NA
WP_040201719.1\|3393991_3395596_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	1.8e-38	34.8
WP_052465009.1\|3395801_3396086_-	hypothetical protein	NA	NA	NA	NA
WP_040201721.1\|3396196_3397216_-	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA
WP_040201723.1\|3397709_3399128_-	trehalose-6-phosphate synthase	NA	NA	NA	NA
3399397:3399444	attL	NA	NA	NA	NA
WP_040201726.1\|3399673_3400717_-	DNA polymerase	D4HTV9	Vibrio_phage	2.0e-89	50.0
WP_040201727.1\|3400997_3401354_-	diversity-generating retroelement protein Avd	A0A0N7ACE0	Bacillus_phage	5.0e-29	57.9
WP_040201729.1\|3401418_3402477_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A248XD67	Klebsiella_phage	6.2e-59	41.0
WP_040201731.1\|3402483_3402834_-	hypothetical protein	NA	NA	NA	NA
WP_040201732.1\|3402846_3403725_-	hypothetical protein	Q6QI97	Burkholderia_phage	8.9e-11	43.6
WP_040201733.1\|3403759_3404200_-	hypothetical protein	A0A291L9V2	Bordetella_phage	6.6e-31	48.6
WP_052465010.1\|3404212_3405208_-\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	8.0e-24	55.8
WP_040201734.1\|3405200_3406103_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	8.7e-86	60.1
WP_144402090.1\|3406099_3406441_-\|plate	baseplate assembly protein W	A0A193GYY8	Enterobacter_phage	6.7e-31	57.1
WP_040201736.1\|3406434_3407409_-	hypothetical protein	D4HTW7	Vibrio_phage	2.7e-69	45.8
WP_040201738.1\|3407410_3407623_-\|tail	tail protein	S4TTA0	Salmonella_phage	5.8e-09	43.9
WP_040201739.1\|3407619_3408015_-\|tail	phage tail protein	A0A1W6JT48	Escherichia_phage	5.7e-34	52.0
WP_052465011.1\|3408007_3410530_-\|tail	phage tail tape measure protein	H7BVM4	unidentified_phage	3.5e-60	39.2
WP_158414107.1\|3410541_3410700_+	hypothetical protein	NA	NA	NA	NA
WP_040201740.1\|3410821_3411061_-\|tail	phage tail assembly protein	K4I007	Acidithiobacillus_phage	3.2e-11	46.2
WP_040201742.1\|3411105_3411609_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	7.1e-45	52.8
WP_040201743.1\|3411623_3412826_-\|tail	tail protein	A0A193GYC3	Enterobacter_phage	1.9e-144	56.9
WP_158414108.1\|3412829_3413006_-	hypothetical protein	NA	NA	NA	NA
WP_040201744.1\|3413018_3413234_-	hypothetical protein	NA	NA	NA	NA
WP_052465012.1\|3413233_3413806_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	5.8e-27	47.1
WP_052465013.1\|3413805_3414357_-	hypothetical protein	NA	NA	NA	NA
WP_040201745.1\|3414357_3414777_-	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_040201746.1\|3414780_3414984_-	hypothetical protein	NA	NA	NA	NA
WP_040201748.1\|3415052_3415946_-\|head	phage head protein	J9SVY7	Pseudomonas_phage	4.6e-87	53.0
WP_040201750.1\|3415980_3416385_-	hypothetical protein	J9RWG0	Pseudomonas_phage	2.2e-25	50.7
WP_084212227.1\|3416423_3417449_-	hypothetical protein	A0A0M5N0Q6	Ralstonia_phage	7.6e-78	48.8
WP_040201752.1\|3417613_3418063_-	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	1.5e-25	38.2
WP_052465014.1\|3418062_3418827_-	hypothetical protein	A0A2H4IYU7	uncultured_Caudovirales_phage	3.6e-85	67.0
WP_052465015.1\|3418828_3420391_-	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	5.1e-118	45.6
WP_040201753.1\|3420384_3421902_-	hypothetical protein	M4MHG0	Vibrio_phage	2.1e-172	62.4
WP_040201754.1\|3421898_3422504_-	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	1.5e-20	36.7
WP_040201755.1\|3422507_3422804_-	hypothetical protein	J9SNG3	Pseudomonas_phage	1.3e-17	49.5
WP_040201756.1\|3422800_3423247_-	DUF2730 family protein	NA	NA	NA	NA
WP_040201758.1\|3423243_3423450_-	hypothetical protein	NA	NA	NA	NA
WP_158414109.1\|3423455_3423683_-	hypothetical protein	NA	NA	NA	NA
WP_040201760.1\|3423789_3424011_-	hypothetical protein	NA	NA	NA	NA
WP_052465016.1\|3424025_3424520_-	N-acetylmuramidase	K4PBB0	Acinetobacter_phage	4.7e-17	33.3
WP_040201762.1\|3424640_3424943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144402053.1\|3424950_3425745_-	hypothetical protein	A0A2P9JZH6	Alteromonadaceae_phage	2.3e-26	49.0
WP_158414110.1\|3425741_3425933_-	hypothetical protein	NA	NA	NA	NA
WP_158414111.1\|3425917_3426085_-	hypothetical protein	NA	NA	NA	NA
WP_052465017.1\|3426311_3427007_-	ORF6N domain-containing protein	NA	NA	NA	NA
WP_144402054.1\|3427003_3427216_-	hypothetical protein	NA	NA	NA	NA
WP_040201765.1\|3427599_3428043_-	regulatory protein GemA	A0A0M5MRZ7	Ralstonia_phage	1.2e-16	38.9
WP_052465018.1\|3428020_3428203_-	hypothetical protein	NA	NA	NA	NA
WP_040201766.1\|3428195_3428381_-	hypothetical protein	NA	NA	NA	NA
WP_052465098.1\|3428380_3428611_-	hypothetical protein	NA	NA	NA	NA
WP_040201768.1\|3428616_3428802_-	hypothetical protein	NA	NA	NA	NA
WP_040201770.1\|3428965_3429169_-	hypothetical protein	NA	NA	NA	NA
WP_158414112.1\|3429165_3429330_-	hypothetical protein	NA	NA	NA	NA
WP_040201771.1\|3429451_3430072_-	DUF3164 family protein	A0A0S4L2U9	Pseudomonas_phage	6.4e-56	53.2
WP_158414113.1\|3430078_3430219_-	hypothetical protein	NA	NA	NA	NA
WP_040201772.1\|3430449_3430884_-	hypothetical protein	NA	NA	NA	NA
WP_084212169.1\|3430888_3431221_-	hypothetical protein	NA	NA	NA	NA
WP_040201774.1\|3431217_3431634_-	hypothetical protein	NA	NA	NA	NA
WP_040201775.1\|3431705_3432449_-	ATP-binding protein	NA	NA	NA	NA
WP_040201776.1\|3432536_3432914_-	hypothetical protein	NA	NA	NA	NA
WP_040201778.1\|3432906_3435102_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A075CI61	Pseudomonas_phage	8.3e-90	36.8
WP_052465019.1\|3435128_3435398_-	hypothetical protein	NA	NA	NA	NA
WP_052465020.1\|3436142_3436817_+	helix-turn-helix domain-containing protein	X4YTE2	Pseudomonas_phage	4.1e-32	34.9
WP_040201781.1\|3436827_3437343_-	hypothetical protein	NA	NA	NA	NA
WP_040201782.1\|3437585_3437765_-	hypothetical protein	NA	NA	NA	NA
WP_040201783.1\|3438313_3438589_-	hypothetical protein	NA	NA	NA	NA
WP_052465021.1\|3438585_3439023_-	hypothetical protein	NA	NA	NA	NA
WP_052465022.1\|3439359_3440349_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_084211813.1\|3440475_3441927_+\|transposase	IS21 family transposase	NA	NA	NA	NA
3449057:3449104	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP010311.1|WP_040201781.1|3436827_3437343_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP010311.1|WP_040201782.1|3437585_3437765_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP010311.1|WP_040201781.1|3436827_3437343_-|hypothetical-protein

3436827_3437343_-

171 aa aa

3350814-3441927

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP010311_1	TypeI	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	3417950-3417981
NZ_CP010312_2	TypeV,TypeIV-A	2.1\|160095\|37\|NZ_CP010312\|PILER-CR,CRT	160095-160131	37	3429041-3429005
NZ_CP010312_2	TypeV,TypeIV-A	2.12\|160096\|36\|NZ_CP010312\|CRISPRCasFinder	160096-160131	36	3429040-3429005

1. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010311 position: 3417950-3417981, mismatch: 0

gccgatatcgcgaaagaccggcgcgaggttgc	CRISPR spacer
gccgatatcgcgaaagaccggcgcgaggttgc	Protospacer
********************************

2. spacer 2.1|160095|37|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010311 position: 3429041-3429005, mismatch: 0

cctggccgcaggcatcaagcccgaaaaacagtgggtc	CRISPR spacer
cctggccgcaggcatcaagcccgaaaaacagtgggtc	Protospacer
*************************************

3. spacer 2.12|160096|36|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010311 position: 3429040-3429005, mismatch: 0

ctggccgcaggcatcaagcccgaaaaacagtgggtc	CRISPR spacer
ctggccgcaggcatcaagcccgaaaaacagtgggtc	Protospacer
************************************

NZ_CP010311.1|WP_040201782.1|3437585_3437765_-|hypothetical-protein

3437585_3437765_-

59 aa aa

3350814-3441927

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP010311_1	TypeI	1.49\|1372261\|32\|NZ_CP010311\|CRISPRCasFinder,CRT,PILER-CR	1372261-1372292	32	3417950-3417981
NZ_CP010312_2	TypeV,TypeIV-A	2.1\|160095\|37\|NZ_CP010312\|PILER-CR,CRT	160095-160131	37	3429041-3429005
NZ_CP010312_2	TypeV,TypeIV-A	2.12\|160096\|36\|NZ_CP010312\|CRISPRCasFinder	160096-160131	36	3429040-3429005

1. spacer 1.49|1372261|32|NZ_CP010311|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010311 position: 3417950-3417981, mismatch: 0

gccgatatcgcgaaagaccggcgcgaggttgc	CRISPR spacer
gccgatatcgcgaaagaccggcgcgaggttgc	Protospacer
********************************

2. spacer 2.1|160095|37|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010311 position: 3429041-3429005, mismatch: 0

cctggccgcaggcatcaagcccgaaaaacagtgggtc	CRISPR spacer
cctggccgcaggcatcaagcccgaaaaacagtgggtc	Protospacer
*************************************

3. spacer 2.12|160096|36|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010311 position: 3429040-3429005, mismatch: 0

ctggccgcaggcatcaagcccgaaaaacagtgggtc	CRISPR spacer
ctggccgcaggcatcaagcccgaaaaacagtgggtc	Protospacer
************************************

2. NZ_CP010312

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010312_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010312_1

115445-115561

TypeII

Consensus_repeat	Method
GAGGGCCCAAATGGGCCCGCTAGAGGGCCCAAATGGGCCCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010312_1

>merge|NZ_CP010312|1|115445-115561|CRISPRCasFinder
GAGGGCCCAAATGGGCCCGCTAGAGGGCCCAAATGGGCCCTCGCTTTAGAGACGGAAAGGGTGCTTCTGTACCCGAGGGCCCAAATGGGCCCTCTAGAGGGCCCAAATGGGCCCTCG

>NZ_CP010312|1|1|115445-115561|CRISPRCasFinder
GAGGGCCCAAATGGGCCCGCTAGAGGGCCCAAATGGGCCCTCG	CTTTAGAGACGGAAAGGGTGCTTCTGTACCC
GAGGGCCCAAATGGGCCCTCTAGAGGGCCCAAATGGGCCCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010312.1\|WP_052465118.1\|116637_117924_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369825
NZ_CP010312.1\|WP_040202824.1\|124819_127957_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP010312.1\|WP_144402106.1\|113634_114132_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214615
NZ_CP010312.1\|WP_040202823.1\|124373_124808_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040202817.1\|120257_120587_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236010
NZ_CP010312.1\|WP_040202808.1\|110837_111611_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP010312.1\|WP_040202809.1\|111628_112150_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040202821.1\|123042_124377_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341172
NZ_CP010312.1\|WP_040202820.1\|121210_123046_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_CP010312.1\|WP_040202806.1\|108819_109344_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368367
NZ_CP010312.1\|WP_040202816.1\|116158_116635_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040202807.1\|109520_109805_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_052465119.1\|118066_120163_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|236794
NZ_CP010312.1\|WP_040202805.1\|108488_108842_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_158414132.1\|109862_110024_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_144402109.1\|120899_121148_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040202810.1\|112905_113232_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236468
NZ_CP010312.1\|WP_040202812.1\|114437_115412_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_CP010312.1\|WP_084212241.1\|109995_110457_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284659
NZ_CP010312.1\|WP_040202819.1\|120721_120913_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010312.1\|WP_052465118.1\|116637_117924_+\|hypothetical-protein	gnl\|CDD\|369825	pfam08346, AntA, AntA/AntB antirepressor. In E. coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the bacteriophage 933W.	4.54545e-18
NZ_CP010312.1\|WP_144402106.1\|113634_114132_-\|hypothetical-protein	gnl\|CDD\|214615	smart00318, SNc, Staphylococcal nuclease homologues.	3.73231e-29
NZ_CP010312.1\|WP_040202821.1\|123042_124377_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341172	cd17283, RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Helicobacter pylori SJM180 S subunit (S.Hpy180ORF7835P) TRD2-CR2 and Haemophilus influenzae PittGG S subunit (S.HinGGORF3080P) TRD2-CR2. The recognition sequences of Helicobacter pylori SJM180 S subunit (S.Hpy180ORF7835P) and Haemophilus influenzae PittGG S subunit (S.HinGGORF3080P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	4.60397e-70
NZ_CP010312.1\|WP_040202808.1\|110837_111611_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	4.85072e-54
NZ_CP010312.1\|WP_040202824.1\|124819_127957_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	7.71595e-108
NZ_CP010312.1\|WP_040202820.1\|121210_123046_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	7.16274e-85
NZ_CP010312.1\|WP_040202806.1\|108819_109344_+\|hypothetical-protein	gnl\|CDD\|368367	pfam05280, FlhC, Flagellar transcriptional activator (FlhC). This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.	6.30383e-12
NZ_CP010312.1\|WP_052465119.1\|118066_120163_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	5.1771e-101
NZ_CP010312.1\|WP_040202817.1\|120257_120587_+\|hypothetical-protein	gnl\|CDD\|236010	PRK07395, PRK07395, L-aspartate oxidase; Provisional.	0.00146714
NZ_CP010312.1\|WP_040202810.1\|112905_113232_+\|hypothetical-protein	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0.000890903
NZ_CP010312.1\|WP_040202812.1\|114437_115412_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	6.05766e-52
NZ_CP010312.1\|WP_084212241.1\|109995_110457_+\|hypothetical-protein	gnl\|CDD\|284659	pfam07291, MauE, Methylamine utilisation protein MauE. This family consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded.	0.00668541

>NZ_CP010312.1|WP_040202812.1|114437_115412_-|ParM/StbA-family-protein
MFVVGIDIGYSNLKVCSGEASGSLVSQVFPVGAAPQECFAGSVNGNSDGFCVKVEEKKYISCVEPDKLANWQRALHEEYATTPTYKALFLGGLMSTQREVVDSLVTGLPVSHFQEPGRKENLARRLNGVHTIDDHRIIDIRNVEVIPQPVGCYFDVAVATGREEEFIDADILVIDPGFFSVDWVLISGNDVQYRFSGSSVQATSMLLESAAEKIGADHDAKVTVEKIEKAIRAQRETIRIFGNRVPYAPYLNKAAETMGATVMDTVKTSLRSKAGDVDIVILAGGGAQYYRDAVSATFPKAEILLPSEPVLTNARGYWYYGLPA
>NZ_CP010312.1|WP_144402106.1|113634_114132_-|hypothetical-protein
MWRKFFAMCFFLVFILSSSPAFAGVTVRVIRVLDGDTLTISHQDSSYRVNLVGIDAPEKGQPFNRQGKQFLLSMVAQKDVVLEHYGADQEGNIIGEVFLEDGRSLNRLLLEKGLAWNSSDDEALSKLQEEAKRQKKGLWQIEDPTPPWEYREMLLREKEGTDRFF
>NZ_CP010312.1|WP_040202810.1|112905_113232_+|hypothetical-protein
MSNEMVVVMVALGFLLAFLKKETRPANRRVHPKGVITPFQPPKEGWKPALSPDEMRELEVPAFIRRKQYSSTSSSVLLLDGKKEEVENDSTSSFEEEESRDLIVPEII
>NZ_CP010312.1|WP_040202809.1|111628_112150_+|hypothetical-protein
MTAQEKKSSREEVKNSLGAMFARHKHSPEEIKKYLDEEVTEVQPEEKQDEKPKAPQPRKKTKPAPRAEKVVQKKPSSSHKKPDEKSVQGSAQQDSEREGKKKTVRERAIYEGFNLDRDLRRKVDELVASPFFTIDGQKVTNRTEFWHLAGKHVIEVFGSKADEMEKVFEKIHK
>NZ_CP010312.1|WP_040202808.1|110837_111611_+|ParA-family-protein
MDIVAIASQKGGVAKTTTALALSAGLANLGHRVLGVDVDPQYNFSLGAAVPTDDVGQSLFSVFVDNKALSEIIVSSPQGFDVARSLPAMYQTERALAGKMMIELKLAKALKSVQEQYDFCIIDCPPALDLLTTNALLAATHVIIPAQLHSFGAAGVVQIFDMLDRIEPETGIPAPKILGVLPTFYDARKNLSKDLLAELRKFYKSQVFDAVVPTSAPLEATASVGRSIYQFAPSSSGARAYKRVCLETLARLEGRYK
>NZ_CP010312.1|WP_084212241.1|109995_110457_+|hypothetical-protein
MLIRCLKTSKTISRISFLSAIAAGSIFVYAGVLKALDVAGLTESIAAYQILPIQMVPFVAATLPYVEIGAGLLVLLRPWRGAALATLAVLNGVFMVALSSLIIRGINIDCGCFSSATTSDPTSVSSALLRDLVIMAVIAFASLSAVRRESSGT
>NZ_CP010312.1|WP_158414132.1|109862_110024_+|hypothetical-protein
MIQTIAKMTAIFACSAVIGGLVNLDYLCKSGQELAQPSQCQGQQDVDSLLENF
>NZ_CP010312.1|WP_040202807.1|109520_109805_+|hypothetical-protein
MVADKPLDNIGEGNITRVSGESTVTVCNKYSFLITTGDIVKAVVVAGRKAGTYVGRVAVRATGSFNIKTEVATLQGIGWRHCRLLHKADGYSYA
>NZ_CP010312.1|WP_040202806.1|108819_109344_+|hypothetical-protein
MKVSQIVKDISVWQVAEQMIVRGARPPIVIASTNLPRDAVRDMYYSIHGKRPPSGLLPDSSLNVIKKVIHASQATIFYHCYRKVAEADIFKTSPARDVLRGFDFYQKVCGAGCTESIDFSVAWFIARDLRTRNIETKYCPKCGMDYLFSLTNSLLHSCPFCKNLGDKNKKNRAE
>NZ_CP010312.1|WP_040202805.1|108488_108842_+|hypothetical-protein
MDTKYERDIKTLNRRYLMLVREMEREDSDYAHTVTGVPYQIRRKLKDMTIEEVEEMVEHLPIMPFTFRLMERHWKRIADAIRTSRFDARKTAETISFMTVAAALQEEDKGGEGFADC
>NZ_CP010312.1|WP_040202816.1|116158_116635_+|hypothetical-protein
MDSKRARIKKDIEDCIEDLYENARVKVDRFWKENMAEENKQDKNNRSRIGVRTRYRNGTLTIDWFFNSFVKGLNEQGKDEWKVFSTQIKKPAGKTMYSEGPLKKHCRDWEMERVLEYEKEFAVIRTDFAGLSKARSALKTSERQMAKLQADKQETTEG
>NZ_CP010312.1|WP_052465118.1|116637_117924_+|hypothetical-protein
MAGEMAGEMAEVLVNEVETIETPDGIFTGINGRKIHAAKGSEKPFVVWLPREIKRCKLKREEDFVIYESRSSRRRRTMECLFFTKAAAKILEKEPPHGMTEEDEDEDIPSREEMGRLLPAPVSGGEQVFDLHDTPCIDARTLYETLKIKKSFSIWIRSNFKKINLEKGRDYREIEVLDLKVQNFVGRPRTDYLLSLDAAKHIAMMSKGRVAHTVRQYFIDIEKRYRIESALPAPGSPNDPRRLGQDLINDIRTRLKSLGKYCCPDYAESLSDFVERSLLYHFDIRSIYQLRQGDVPMFKYQISECQRCFEVNQYDPSWRNDGLLKFVNSRHYHCGVIRHPRMEDFLRHQRDIKPRRHALPQQRLHLLPQEHEVGKTVNLDTSLDSLLSRLSECDSISVELSSQGKQGQLQISIPLESIPEFIKTLRSD
>NZ_CP010312.1|WP_052465119.1|118066_120163_+|DEAD/DEAH-box-helicase-family-protein
MSPQESEKKALGRLSAFGLKKTWQTAFLLPSSWDDMTCVLSDFSQPLLDGDPYLVCGRLESKPKVKFDSGRNSKVPRLNGSLLDGQGNRIGFSQFGDTRKLEEQLKKAGNQTVYLYGTISLSGSRIFLRNAELVHPAWAGRLRPKYPGKVRVIGPETARSRILALLKEALPNAAFWLEEVLKEVGPPEELIRIAGFHDGTSLEDILYKAHLPRNFQEGVKAQRGLERLAALGVILQAKAVKPAAKAFSQIDAGCWRPRASSIPFPLTDEQQVAVEGMLDGLRSHTALHGILTGDVGTGKTATYALACAAVADRAGRAAVLLPNQVLAEQIANDLRSWWPDISIHTITGADKGEIPDASILVGTTALLHRLSGSDWVPDLVVVDEQQKLSREQREVMLVEGQTNLIEVTATPIPRTQALLRYGIIKVWKLTRPHTPKQIDTRIWYSFEKPDLFARIRQTLTAGDQVLVVYPLREQDEKNSSGRQDSGAQSVEEAFVQWNRIFPDKVRHCHGQMPPDQKNAAIADLKEDRAQILIATSVVEVGINLPRLRRIVIVRPDRYGLTQLHQLRGRVARTGGQGWCDLYLPIEVKPATLERLEVLERTQDGFEVAEWDLKLRGAGDMGRDSTKQSGADETFLFGRGVKIEILDEMINLVMKKASPGAEQKPELLGEAKLKRNHEPGYQTHTSVAPRQVKKPAVNF
>NZ_CP010312.1|WP_040202817.1|120257_120587_+|hypothetical-protein
MKTDKQYATRNTGEQGVYFDRHNDAMTREALHGKHRIAAELAHRDIIIERLRAELAAERMTEEKRELKEARDLIKWVTHCASIKGPAGTTAYIVSDSHMQKMRKFVEKE
>NZ_CP010312.1|WP_040202819.1|120721_120913_+|hypothetical-protein
MEVKLKLSDEKDATAGWIFDPSCLEKIRDEYRERNGDLQTADIEFIDDILSIVWEAGLLDVDE
>NZ_CP010312.1|WP_144402109.1|120899_121148_+|hypothetical-protein
MWTNEHGIYQEFLRSPRQAWRKGENNFAKNKGSLESTVESPFLKKLSFHQKMELTVESPVLSSATTLESGVEFPAPEEANIG
>NZ_CP010312.1|WP_040202820.1|121210_123046_+|SAM-dependent-DNA-methyltransferase
MNQQALSSFIWSVADLLRGDYKQSEYGKVVLPFTVLRRLDCVLEKTKDDVLREYEDKKKAGINPEPFILRKTGQAFYNVSPFDMKKLMGDQDHIKENLFAYIQAFSPAVRDIFERFDFYTQIERLSKAGLLYLITEKFLTINLHPDSVSNAQMGLVFEELIRRFSEISNETAGEHFTPREVIRLMVNLIFVEDDDVLSKPGVVRTIYDPTAGTAGMLSEAGEYLAELNPKARLTMHGQELNDESYAIAKADLLIKGQDISNMVAGNTLSDDGFPHTRFDYMLSNPPFGVEWKKVQKVVTDEHEKKGFNGRFGPGLPRVSDGSMLFLLHLVSKMRPAKDGGSRFGIVLNGSPLFTGGAGSGESEIRRYMLENDLVEAIVALPTDMFYNTGISTYVWICSNRKPDHRKGLVQLIDASSFWQKMRKSLGSKRKEMNQEQIDEVTRIFGEFTEARLATVLDADGKEAARQVLYPGEKEPQAPEGGKVKVVPISRIFKSRDFGYHTITVERPLRDEKGHVVLGQRGKTKGQRQPDSSLRDTENVPLAEDVEAYFKREVLPHAPDAWIDHDKTKVGYEIPFNRHFYVFEPPRSLSEIDTELKVVTDNIVRMIGELSA
>NZ_CP010312.1|WP_040202821.1|123042_124377_+|restriction-endonuclease-subunit-S
MSFPRYEKYKDSGVEWLGEVPAHWTEHAIKRCVNGCVNGIWGDEPDGENDIIVLRVADFDRTKLCISDEKLTYRAISEKDSQPRLLKVGDLLMEKSGGGEKTLVGCVVLFDKDYSAVTSNFLAKMTPKENWDSKFLLYVFSHLYAGRVNFPSIKQTTGIQNIDSQSYLMEQFTFPTLPEQRTIAAFLDHETGKIDALVAEQEKLIGLLKEKRQAVISHAVTKGLDPNARMKDSGVEWLGEVPEGWKVVSIKFLSPVQRGASPRPIDDPKYFDDDGEYAWVRIADVTASNGLLTDTTQRLSELGSSLSVKLDKGSLFLSIAGSVGKPCITGMKACIHDGFVYFPRLEIDQQWLYRIFEASICYGGLGKMGTQLNLNTDTVGSIRIAVPPPQELDAILVFLDCETTKIDALIEEAQHAIELMKERRTAMISAAVTGKIDVRGYCPA
>NZ_CP010312.1|WP_040202823.1|124373_124808_+|hypothetical-protein
MRRTLSERIVSFLANLAHFQHKKIDGTFAAERITDGTLFLPYIDPDGDDDLSLIRVRWQGNPSNESEVSGLQIAEHEIIVAVQHWVAVGDMDDEQSSIEHLFRHFGFKTGARLRFEKENREFSNTLEKLMKDLGWSAFKKFLGL
>NZ_CP010312.1|WP_040202824.1|124819_127957_+|type-I-restriction-endonuclease-subunit-R
MTTVLPVNTLHKEFKFVDEICEHLGSHGWLYAPGDAQDYDRARALFPADVVAWVQATQPKAWDALSKNHGPSAETVLLDRLRKSLDDRGTLDVLRNGVEMIGLRQPLLFAQFKPALAINPETMEKYEANRLRVVREVYLSHGPERLDLVFFLNGIPVSTAELKTDFTQSVHDAIDQYRFDRNPKVKGKGIEPLLSFPCGALVHFAVSNMEVHMTTKLAGPKTSFLPFNKGDNGAAGNPVNPQGGHRSAYLWEEVLERESWLEIIGRYLITKRDNKKKVVGIIFPRYHQLAATRKLVQAILAEGPGGKYLFQHSAGSGKTNSIAWSAHFLADLHDENHQKLFDTVLVVSDRTVLDAQLRDAIFDFERTAGVVATISGEQGSKSGELAKALADGKKIVVCTIQTFPFALRAVQELAATEGKRFAVIADEAHSSQTGEAAAKLKAVLSAEELMELEDGGEISTEDLLVAQMTARAADSGITYLAFTATPKAKTLELFGTRPDPTRKAAHDNLPAPFHVYTMRQAIEEGFILDVLKNYTPYSLAFKLAQDGKELDSTQVEKSAALKGIMRWVRLHAYNISQRVQIVVEHFRENVAGLLDGQAKAMVVVASRKEAVRWQVAIDKYIKAQKYPIGTLVAFSGEVKDPETGADPFTEKSTILNPNLRGRDIRDAFDTGEYQILLVANKFQTGFDQPLLCGMYVDKRLSGIQAVQTLSRLNRSHPGKENVFIVDFVNSPQDILDAFKPYYGNAELENVTDPDMIFNLRSKLDAAGFYDDFEIDRVIEVYLNPASKQKDLTAAIEPVTSRLLQQYKEARAARIAAEKKKDKAAAEQAKNALDALVLFKSDMQSFVRAYTFLSQIFDYGNTAIEKRAIFFRLLIPLLEYGRERNEIDLSKVILTHHNLKKHEQQSLTLEGGEKLKPMTEVGAGSVQDKEKALLREIIAQVNELFEGNLTEDDKLVYVNNVLKGKLMESEVLAQQAASNTKEQFANSPDLAHEILAAIMDALTAHTSMSTQALNSEKVRQGLQDVLLGPGNLYEALREKATAEPTL

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP010312_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010312_2

160059-161201

TypeIV-A,TypeV

Consensus_repeat	Method
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	PILER-CR
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAAC	CRISPRCasFinder
GTTGTAATAAGCTGTAANAGTNTTGCGGCTTTGGAAAN	CRT

15 spacers

csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG,cas14j

The CRISPR arrays of NZ_CP010312_2

>merge|NZ_CP010312|2|160059-161201|PILER-CR,CRISPRCasFinder,CRT
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAACCTGGCCGCAGGCATCAAGCCCGAAAAACAGTGGGTCGTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAACGAGCCCCTCACAGGACAAGGGCGCCAGATCATGCATAGATGTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAACAGCAAGAATTCTTGGTTAATGTGAGGCGCGTAGATTCAGGTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAACCATACTTGGCGTCGCCGAAATAGTCATGTATCGCATGTTGTAATAAGCTGTAAAGTATTGTGGCTTTGGAAACAGATGTTTACCTTTAAATAAGGGCGAAAAACGACCTTTGTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAACACCCTTCTTCAAATTAACGCAGTACCGGTTTTGACCGGTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAACAGTCAATCCTTTAGTGAGATAGAGCTTCTGCGCGGCAGTTGTAATAAGCTGTAAAGTATTGCGGCTTTGGAAACCTCGACGAGCAGTAGGCCCTGATTACCCATCGACCTGTTGTAATAAGCTGTAAAATATTGCGGCTTTGGAAACAAGTATTTCCCTCGCTTCGATGGAAAGAGAAATTCACGTTGTAATAAGCTGTAAAGTATTGCGGCTTTGGAAATACGTGTTTTTGGCGGATGGGACCGGGCGCAAGGCAAATGTTGTAATAAGTTGTAAAGTGTTGCGGCTTTGTAAACTAGCGCAAGCTAGTGCCATCGATCATACGATGCTTAGGGGTTGTAATAAGCTATAAAGTGTTGCGGCTTTGGAAAATGATTGGTTTTGGTGATTCTTGCATACAATTGCCCCGTTGCAATAAGCTGTATTTTGTTACGGCTGTGAAAATGGCCTTCTCACAAGTTGCGAAATCTCGATATCACACGTTGCAATAAGCTGTATTTATTACGGCTTTGGAAACATGTGTGAAATATCATACTCGCCCTGATTGTTGCAATAAGCTGTTAAAGTATTGCGGCTTTGGAAACTTCTGGACACTCTGGCGTATCCGCCGATTCGTCTGCAGTTTGCAATAAGTTGTAATAACTTATGGCTTTGAAAA

>NZ_CP010312|2|1|160059-160914|PILER-CR
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CCTGGCCGCAGGCATCAAGCCCGAAAAACAGTGGGTC
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CGAGCCCCTCACAGGACAAGGGCGCCAGATCATGCATAGAT
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CAGCAAGAATTCTTGGTTAATGTGAGGCGCGTAGATTCAG
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CCATACTTGGCGTCGCCGAAATAGTCATGTATCGCAT
GTTGTAATAAGCTGTAAAGTATTGTGGCTTTGGAAA	CAGATGTTTACCTTTAAATAAGGGCGAAAAACGACCTTT
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CACCCTTCTTCAAATTAACGCAGTACCGGTTTTGACCG
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CAGTCAATCCTTTAGTGAGATAGAGCTTCTGCGCGGCA
GTTGTAATAAGCTGTAAAGTATTGCGGCTTTGGAAA	CCTCGACGAGCAGTAGGCCCTGATTACCCATCGACCT
GTTGTAATAAGCTGTAAAATATTGCGGCTTTGGAAA	CAAGTATTTCCCTCGCTTCGATGGAAAGAGAAATTCAC
GTTGTAATAAGCTGTAAAGTATTGCGGCTTTGGAAA	TACGTGTTTTTGGCGGATGGGACCGGGCGCAAGGCAAAT
GTTGTAATAAGTTGTAAAGTGTTGCGGCTTTGTAAA	CTAGCGCAAGCTAGTGCCATCGATCATACGATGCTTAGGG
GTTGTAATAAGCTATAAAGTGTTGCGGCTTTGGAAA

>NZ_CP010312|2|2|160059-160988|CRISPRCasFinder
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAAC	CTGGCCGCAGGCATCAAGCCCGAAAAACAGTGGGTC
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAAC	GAGCCCCTCACAGGACAAGGGCGCCAGATCATGCATAGAT
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAAC	AGCAAGAATTCTTGGTTAATGTGAGGCGCGTAGATTCAG
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAAC	CATACTTGGCGTCGCCGAAATAGTCATGTATCGCAT
GTTGTAATAAGCTGTAAAGTATTGTGGCTTTGGAAAC	AGATGTTTACCTTTAAATAAGGGCGAAAAACGACCTTT
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAAC	ACCCTTCTTCAAATTAACGCAGTACCGGTTTTGACCG
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAAC	AGTCAATCCTTTAGTGAGATAGAGCTTCTGCGCGGCA
GTTGTAATAAGCTGTAAAGTATTGCGGCTTTGGAAAC	CTCGACGAGCAGTAGGCCCTGATTACCCATCGACCT
GTTGTAATAAGCTGTAAAATATTGCGGCTTTGGAAAC	AAGTATTTCCCTCGCTTCGATGGAAAGAGAAATTCAC
GTTGTAATAAGCTGTAAAGTATTGCGGCTTTGGAAAT	ACGTGTTTTTGGCGGATGGGACCGGGCGCAAGGCAAAT
GTTGTAATAAGTTGTAAAGTGTTGCGGCTTTGTAAAC	TAGCGCAAGCTAGTGCCATCGATCATACGATGCTTAGGG
GTTGTAATAAGCTATAAAGTGTTGCGGCTTTGGAAAA	TGATTGGTTTTGGTGATTCTTGCATACAATTGCCCC
GTTGCAATAAGCTGTATTTTGTTACGGCTGTGAAAAT

>NZ_CP010312|2|1|160059-161201|CRT
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CCTGGCCGCAGGCATCAAGCCCGAAAAACAGTGGGTC
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CGAGCCCCTCACAGGACAAGGGCGCCAGATCATGCATAGAT
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CAGCAAGAATTCTTGGTTAATGTGAGGCGCGTAGATTCAG
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CCATACTTGGCGTCGCCGAAATAGTCATGTATCGCAT
GTTGTAATAAGCTGTAAAGTATTGTGGCTTTGGAAA	CAGATGTTTACCTTTAAATAAGGGCGAAAAACGACCTTT
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CACCCTTCTTCAAATTAACGCAGTACCGGTTTTGACCG
GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAA	CAGTCAATCCTTTAGTGAGATAGAGCTTCTGCGCGGCA
GTTGTAATAAGCTGTAAAGTATTGCGGCTTTGGAAA	CCTCGACGAGCAGTAGGCCCTGATTACCCATCGACCT
GTTGTAATAAGCTGTAAAATATTGCGGCTTTGGAAA	CAAGTATTTCCCTCGCTTCGATGGAAAGAGAAATTCAC
GTTGTAATAAGCTGTAAAGTATTGCGGCTTTGGAAA	TACGTGTTTTTGGCGGATGGGACCGGGCGCAAGGCAAAT
GTTGTAATAAGTTGTAAAGTGTTGCGGCTTTGTAAA	CTAGCGCAAGCTAGTGCCATCGATCATACGATGCTTAGGG
GTTGTAATAAGCTATAAAGTGTTGCGGCTTTGGAAA	ATGATTGGTTTTGGTGATTCTTGCATACAATTGCCCC
GTTGCAATAAGCTGTATTTTGTTACGGCTGTGAAAA	TGGCCTTCTCACAAGTTGCGAAATCTCGATATCACAC
GTTGCAATAAGCTGTATTTATTACGGCTTTGGAAAC	ATGTGTGAAATATCATACTCGCCCTGATT
GTTGCAATAAGCTGTTAAAGTATTGCGGCTTTGGAA	ACTTCTGGACACTCTGGCGTATCCGCCGATTCGTCTGCAG
TTTGCAATAAGTTGTAATAACTTATGGCTTTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010312.1\|WP_084212247.1\|161224_163120_+\|DEAD/DEAH-box-helicase-family-protein	DinG	cd09708_DinG_CAS-IV-A	gnl\|CDD\|274436
NZ_CP010312.1\|WP_040202870.1\|158035_159160_+\|type-IV-CRISPR-associated-protein-Csf2	csf2gr7	cd09706_csf2gr7_CAS-IV-A	gnl\|CDD\|187837
NZ_CP010312.1\|WP_052465124.1\|150101_150758_+\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|214615
NZ_CP010312.1\|WP_040202881.1\|167939_168539_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040202852.1\|166447_166855_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP010312.1\|WP_040202879.1\|166896_167772_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|115680
NZ_CP010312.1\|WP_040202866.1\|155547_156498_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_CP010312.1\|WP_144402111.1\|152885_153197_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040203022.1\|165269_166424_-\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_CP010312.1\|WP_040202868.1\|157228_158005_+\|hypothetical-protein	csf1gr8	cd09705_csf1gr8_CAS-IV-A	gnl\|CDD\|187836
NZ_CP010312.1\|WP_144402113.1\|163251_163866_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040202872.1\|159159_159873_+\|hypothetical-protein	csf3gr5	cd09707_csf3gr5_CAS-IV-A	gnl\|CDD\|187838
NZ_CP010312.1\|WP_052465125.1\|153489_154869_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238846
NZ_CP010312.1\|WP_040202877.1\|163875_164532_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040202867.1\|156528_157239_+\|hypothetical-protein	csf5gr6	mkCas0159_csf5gr6_CAS-IV-A	unknown
NZ_CP010312.1\|WP_040202862.1\|152154_152559_+\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|119346
NZ_CP010312.1\|WP_040202883.1\|169034_169370_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_144402114.1\|169389_170091_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040202882.1\|168554_168929_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010312.1\|WP_040202865.1\|154883_155522_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010312.1\|WP_040203022.1\|165269_166424_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.45613e-42
NZ_CP010312.1\|WP_084212247.1\|161224_163120_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|274436	TIGR03117, cas_csf4, CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.	5.6337e-67
NZ_CP010312.1\|WP_040202870.1\|158035_159160_+\|type-IV-CRISPR-associated-protein-Csf2	gnl\|CDD\|187837	cd09706, Csf2_U, CRISPR/Cas system-associated RAMP superfamily protein Csf2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Contains several motifs similar to Cas7 family.	2.91166e-42
NZ_CP010312.1\|WP_052465124.1\|150101_150758_+\|thermonuclease-family-protein	gnl\|CDD\|214615	smart00318, SNc, Staphylococcal nuclease homologues.	7.11226e-32
NZ_CP010312.1\|WP_052465125.1\|153489_154869_+\|hypothetical-protein	gnl\|CDD\|238846	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase activity (sulphate adenylate transferase) .	1.75171e-14
NZ_CP010312.1\|WP_040202879.1\|166896_167772_-\|hypothetical-protein	gnl\|CDD\|115680	pfam07042, TrfA, TrfA protein. This family consists of several bacterial TrfA proteins. The trfA operon of broad-host-range IncP plasmids is essential to activate the origin of vegetative replication in diverse species. The trfA operon encodes two ORFs. The first ORF is highly conserved and encodes a putative single-stranded DNA binding protein (Ssb). The second, trfA, contains two translational starts as in the IncP alpha plasmids, generating related polypeptides of 406 (TrfA1) and 282 (TrfA2) amino acids. TrfA2 is very similar to the IncP alpha product, whereas the N-terminal region of TrfA1 shows very little similarity to the equivalent region of IncP alpha TrfA1. This region has been implicated in the ability of IncP alpha plasmids to replicate efficiently in Pseudomonas aeruginosa.	2.41098e-09
NZ_CP010312.1\|WP_040202868.1\|157228_158005_+\|hypothetical-protein	gnl\|CDD\|187836	cd09705, Csf1_U, CRISPR/Cas system-associated protein Csf1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein; also known as Csf1 family.	1.38459e-28
NZ_CP010312.1\|WP_040202872.1\|159159_159873_+\|hypothetical-protein	gnl\|CDD\|187838	cd09707, Csf3_U, CRISPR/Cas system-associated RAMP superfamily protein Csf3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	8.51869e-20
NZ_CP010312.1\|WP_040202862.1\|152154_152559_+\|ASCH-domain-containing-protein	gnl\|CDD\|119346	cd06554, ASCH_ASC-1_like, ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.	4.12763e-26
NZ_CP010312.1\|WP_040202852.1\|166447_166855_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	5.79686e-54
NZ_CP010312.1\|WP_040202866.1\|155547_156498_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	1.28891e-22

>NZ_CP010312.1|WP_040202872.1|159159_159873_+|hypothetical-protein
MDALKISWELKTPIVLKGDMPLMLDSLLAWCAVQKDHRENGIGESPWAAQERLPLGQVSGIWQASQLHFEFISERLPFTMTRRHELDPFAKVLQPGAKGFEKGIPEDLLRKSWLCQQKKDTFEASSGPYRAFLLHQKYRWVEKAQAWCVGDKDSVEELLQELTHLGSLTRNGFGAVKSTTVELASEDQKENWRIRPLPVEAGLEKPGITYAMAMQSVRPPYWDRTQYQKVLVPILPF
>NZ_CP010312.1|WP_040202870.1|158035_159160_+|type-IV-CRISPR-associated-protein-Csf2
MAKALKNIVIHGEITLLTGMTVASTEDTWTDGKRIFSVKPPSQVAPCTSTQKYGIVETLPDDQGEMRTQITRVPIFPANGLRGQLRRAAADMIASHLVRKGEKLDLRAFHILNCGASTGSPEGVVPPVSMVQEWAAHPYFGLYGGGPFLMSSGFRIDTMWMKCRPTVEIGMVAPDSDALTLEPWQATQVVMFKRVDDVIQFRNPFAENLILDYEESVNAWLKHREGAGEARKKAKEENSGEKIQAKIDSWSFFEMVLPGARFDFNTTIHSPLANQGHVGLLVKSLESLINKQALGGWSRNGFGRFAANLDFVGEDVDGKRVQGRLIHFDPTTRQHILGDHDALNESIAAWQDRLEDIQAKEIERLCFLSKKGTS
>NZ_CP010312.1|WP_040202868.1|157228_158005_+|hypothetical-protein
MLFNPTEFACKALGLEPQGEPWGKNHPVSCTYCGRTIEFGDLSLKKVIGSNFLDAHELTAPGTNVCCGWCAPCKSKSFLARLGAAVITEEGAYSILSDANRTWFLLTPPKPPFMVFARSIENAQHLVWRTPMTYDIEAIQLRFGPHLFVIRHSVLLKSIKVCERMGKKITAYKQDKAGAKKNSGFRHRHPFASLDRMGKGAKSGVFLPHVQDLCHSDPQFAEDAAFIRKLSDGELWGLATLMKQKPEEPIKPQPVSLK
>NZ_CP010312.1|WP_040202867.1|156528_157239_+|hypothetical-protein
MRWQTLSIKTPEDTLRPDQARKILAAQTGTDLPPQILHYKKDLHPASGLSPFRFGARRGTVLLHAVGNQACAQLRPSSEMIIAAFESHYGRAIDSQITNGVFNKNRGHLKKFCIPYLILQQHPNVYKRIKDDLQTPECPKATALAEQKIREGIVRQYEDMGMYLEDHEYALYEVKIRGNDHGRFVPIAIKPGVFGLAARNVEFFSDLSFTGPWHVGHLVSRGYGLILPAKGGKRAV
>NZ_CP010312.1|WP_040202866.1|155547_156498_+|SAM-dependent-DNA-methyltransferase
MGKKERQRWQQNDQAVELLKKDGPLSEAEKELIRRCYSGYGGLYETFGQFFTPPEVVSFVHQLLGLDTTTTPLDVLEPSAGAGAFLEGLSSSCRVTAYEMMAEAARVAQILHPQATVHRTDTLEHLADIEGNFDVVIGNPPFCKLHDPLRYEGFTISKDKARKAAEHYFVELAVRALRPGGMLAMVLPEGILSNSATSALRAWVLDHCWLRAVVSLPPETFVKSGTTVKTSVVVFQKKVEGVDPGDYQIFMAIAESLGWDSRGRENKANDLEEILQTYRLHHADQSPLNLLGAGTPPCTSQQDHQAIPGEQLLLAI
>NZ_CP010312.1|WP_040202865.1|154883_155522_+|hypothetical-protein
MSELNANIFYTDFEAAPEVGALVNTKALAVYAHKNGLEQVCFEANSEQMQMPHILLEAAGVKQYYRFAPKASTEKQSVYVRLDEIEGLKLKTARMMWKHNQCKCKDAPISLEEEILLDADFEHPEIDTHRYLWLGYPCEACGKKKVHAALFCPAGACLGLEDLIERALFHQKASRQEVKMKLRDLLAWHTSWQPPEKILSSIVLPQSPFVWF
>NZ_CP010312.1|WP_052465125.1|153489_154869_+|hypothetical-protein
MSILLKTLFPQVDFTYVFTDTEAEDPELYESLERLEDFLGQKIHRVVSEKGGFYDLLDHFGNFLPSGRARWCTKELKLIPFKKWLKKIRPQSSTQSIYSFVGIRADEPAREGFAASQDFIHTEFPFRALGMEREQVFALLSDTIGVPRLYRHRTRSGCSFCPFMRRSELLGLYRWNPKSFAKGASYEKLCDADRKRYQDSSTPVWKEIGWGLNWTTLPVPERVDARFADSSPSMRWARRINQTALNGEMKRHMPPQPEEEMVEVWFGAEFFVDEMMSAMDPSSPGIWWQEPITFSSSRSGLTRQLKLHYEHRLRTPEAHMMSLEEMRRNLRLAVYRVEIPARLVDLDTPSRAGEKDQDSSYTWNSNFAFSQIKQVYNWVLRTLHVAGLCQQLREFWNAPEEGWEAQRRQNLIEALEKITDPVGTLTGMDLFDPPVACESQPDTIDASVYPEQQQMSLTI
>NZ_CP010312.1|WP_144402111.1|152885_153197_+|hypothetical-protein
MQDQQPPCRKDVAQAGKNLPALEKTEQVWSFWAGSKRYDFCEEDYQSLDGQPALFWAWLDTAGSLAELDIENGAIATFNTLIFKNLTLARQIFKLALKSPSLT
>NZ_CP010312.1|WP_040202862.1|152154_152559_+|ASCH-domain-containing-protein
MTLDHIAEKAISIRQPWAWLILNGGKDIENRTWPTRFRGKVLIHAAKGVTRDEWRDAWSWVRHVCPEAWEKGCREINAGTIERGGIIGVAEVVDSVTHSDSRWFVGPHGFVLRNVEPLPFYPCKGALGFFKPKP
>NZ_CP010312.1|WP_052465124.1|150101_150758_+|thermonuclease-family-protein
MHKTIHALTFTLFLFLFLTSSLYAFTAQVVKVSDGDTITVLTEDKKEARIRFYGVDTPERGQAFGRVATEHLKTLLTPTVEIEVLDQDRYGRLVGLVYNSAGTNLNQQMVADGYAWVYTRYCSKSFCSDWKQLQNEARSAASGLWRDRDPVPPWQWRQGKRSSSHPDKELSAPFSGNTESQVAHRESCRHYDCKHCSVEFQTAAEAKNAGFRLCRMCN
>NZ_CP010312.1|WP_084212247.1|161224_163120_+|DEAD/DEAH-box-helicase-family-protein
MTHALAPAFRTHQQKFYNNLISSFDKERISLNEGATGMGKSRAMVQAALDLLDQHDQPVVISCPSISGLQQMLGELYALESKSRHRVAVALGRANFFEPSRVIDYLEKEMSEQESAPILQWIKDGARSTNQQDGGPLSRLYPQIGFLLEDLVHRLPEGFSIPDAALSQYDEESEAEEMYQQMRASLLDAKLIFCSHIMLACDQRLRKNREASAEILPEYAYLMLDEAHLFESAIASMESRCFSPFSLKSLLLREQVGSKANRCRAVGLCDEIIARAKRVKKTNFFIYFNEWNKKDFVVPSEVDLFLKDLSKMAQALDAILKGRKNKGASKELLDYKYVLSALISKKNNLSINISPVRRYPTFCCGPFTLNHVLSPIWQQPSLRGAAIVSATLFLPGAGADHIIKTLALPKDRLDIHPPIIPSWVTDPVVLHRPRNPMPWLPPQENEFDENRADDFETAHHLWCARLAAQTLLIAQDARSATLVLTTSYETAEEIGSKLSSLGDRLIVQKQNEPFANTRRTFEKLTAAGKKPVWVATGQAWTGLDLGDALSDLVITRIPFAGRGSRVGAGRGASKFDAAFTLRQGIGRLVRKEGCQTKNLWVFDGRIWLPQKQKFYKMFKDIFEVYDKREKS
>NZ_CP010312.1|WP_144402113.1|163251_163866_+|hypothetical-protein
MNRDERICNRYRPGDIISPDEFDRLLETAHSSCSVVLGGTEFWALRNDLGAVTLAATKQLKSSGKIKLCASQTTRQKLLLFPEDRCTCSAQKELANIKPFARHIADIDFQQLHTPLPRYLWVKGPCIHCSKTIVTGIEITRRATGSSLIDIVRRKFSQKDPSPQADPQRVERLFAFYQNSLFWQYGDALASGHLNVDNPLGVWF
>NZ_CP010312.1|WP_040202877.1|163875_164532_+|hypothetical-protein
MKEHPIKPGQRYTYREIINFADENVLDTHRFGETPDAKERTFLAVVNHEAPVAYYMRITFERSDQDTYLCLEKLPKIQAMLAAARTFNPKGYCSCGTDLKDTILQKPILVGADFHSPNQSMDRRCLYFSTFCPSCAKGRIEAVDLDTPDFTPKILGKEIFACAKVWLGNHSWADDETHQNSGLLELAWKRHRAVDHLFEPSRNLPISFNLPSAPFVWF
>NZ_CP010312.1|WP_040203022.1|165269_166424_-|transposase
MARQAFKYKLYHADRNRRLDRQRRIAGQIWNHCIALHKRYYRRYRKHLNQKRLKSRIAYLRNHLRPEWKNLGSQAVQDVIERIERGYELFFKACRLRKEKKSKRVVRPPSFRKSVKYRSFTLKQAGWKLLSPGKVRIGGAAYRYHAGRDIDGTIKTVTISRDAVGDFWIIFSVETDEPSPNRAATGRTAGFDFGLKRFLTGSDETTVEMPEPLKSELKRVKKANQRLSRKLKKSGGRKKARLSLARLHRQIADRRREFHHQTARALSRKYDVICIEDLNLTGMKSLWGRKASDLGFAQFVDILAHHCRKNGSRLVKIDRFFPSSKTCSVCGHVHRELSLRDRTWECPSCGSHHDRDKNAAINIEREGLRLIAHQAGHRLEGEAA
>NZ_CP010312.1|WP_040202852.1|166447_166855_+|IS200/IS605-family-transposase
MNTSTELRHGRSCVFQLHVHLVFVTRYRRGIFSPSHYDTMREVFSNVCADFGAELIETDGEKDHVHLLVNYPPTVPVSKLVNSLKGVSSRLLRKRHPEIEQHYWKGGLWSPSYFAASCGGAPLGVIRQYIENQRA
>NZ_CP010312.1|WP_040202879.1|166896_167772_-|hypothetical-protein
MTKRGDDLDDFLEQSTRRIQEIQRSRQKEEEQMVLPLPDWPAKVIGVPSTVVRSALFGLVKKGARRFVNREKIASWGGVTIRYTGSMLDQGDLDVWMQAIKRSKKDGLGNKVPCSLYSLLRDMGRKGRGKSDREWLKSSVNRMVACSVEIETEGAVYSGNLIREFFYDKHQECFIFSVNPRLAKLFTDDYTQIPLAVRQQLGSNFLKWLHAYILSHKATASHPHYIKVENLKNLSGSQRETRKFKADLKQALEEMKKMNILEEYWFTESNVLYFVRKKSVLLDYANLSDAP
>NZ_CP010312.1|WP_040202881.1|167939_168539_+|hypothetical-protein
MPKKPEISETMTPAKLRNLANRKKWRTVPISEQGEPLVVAIFTQNGLPAYFFRLEFAVFHLLPPASRLKQKALREVWHQCRCAISFVQINQKILLDVDLEYPRQRRSRYLWYRYQCPECGKNALTKALFDDKIAVGESAILKKAEKALSISDPQHKLVDLQDFYNKFWPQDQDMLSSKLESDNPLASLRLPPTQIGAWF
>NZ_CP010312.1|WP_040202882.1|168554_168929_+|hypothetical-protein
MKREEIETLLQSQRIDSQLPLHFDSTDFTLTALEGDCAKCQKSIEPQNFRGHINTHFKDIAIFRAIGICHQCRTLTPFIIRIRADGRFETMINNSWRQGQMFSRRTWRQRIASVFCWRPRKQKG
>NZ_CP010312.1|WP_040202883.1|169034_169370_+|hypothetical-protein
MKIMKEDIFHGDTRTGQVWVRGHLISPGPSLALRRHSPAGFAWGYHGSGPAQLALAILLLFSTPEEALDLYQQFKIDVISTFDSCQDLILPAKDVSAWLREQRSQQHLLAV
>NZ_CP010312.1|WP_144402114.1|169389_170091_+|hypothetical-protein
MRRSEQAAKTLQLKSDFRDWYDCAFDLQGQMVFERLSTAGMSRRQMFAFLQKLGLRTPRHGLVEDLVSALTHDCEDWPKDLQRRFLDQAVDVVIYHDEQAHCGEGKQKISAGKALDLYPDTYASEFIPSVAGRGSVSLRYLQVGQRRWWLRYWSQDDWRSNAGEGDCEILCEEKPGRPHEINDPLFAVDFIRAGKKLYAIDFNIAPGLAPLNGLLLPSEVVSQISSFIQPLQQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP010312_2	2.1\|160095\|37\|NZ_CP010312\|PILER-CR,CRT	160095-160131	37	NZ_CP010311.1	3429005-3429041	1.0
NZ_CP010312_2	2.12\|160096\|36\|NZ_CP010312\|CRISPRCasFinder	160096-160131	36	NZ_CP010311.1	3429005-3429040	1.0
NZ_CP010312_2	2.20\|160691\|37\|NZ_CP010312\|CRISPRCasFinder	160691-160727	37	NZ_CP010311.1	2124846-2124882	1.0

1. spacer 2.1|160095|37|NZ_CP010312|PILER-CR,CRT matches to position: 3429005-3429041, mismatch: 0, identity: 1.0

cctggccgcaggcatcaagcccgaaaaacagtgggtc	CRISPR spacer
cctggccgcaggcatcaagcccgaaaaacagtgggtc	Protospacer
*************************************

2. spacer 2.12|160096|36|NZ_CP010312|CRISPRCasFinder matches to position: 3429005-3429040, mismatch: 0, identity: 1.0

ctggccgcaggcatcaagcccgaaaaacagtgggtc	CRISPR spacer
ctggccgcaggcatcaagcccgaaaaacagtgggtc	Protospacer
************************************

3. spacer 2.20|160691|37|NZ_CP010312|CRISPRCasFinder matches to position: 2124846-2124882, mismatch: 0, identity: 1.0

aagtatttccctcgcttcgatggaaagagaaattcac	CRISPR spacer
aagtatttccctcgcttcgatggaaagagaaattcac	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010312_1	1.1\|115488\|31\|NZ_CP010312\|CRISPRCasFinder	115488-115518	31	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	115488-115518	0	1.0
NZ_CP010312_2	2.1\|160095\|37\|NZ_CP010312\|PILER-CR,CRT	160095-160131	37	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160095-160131	0	1.0
NZ_CP010312_2	2.2\|160168\|41\|NZ_CP010312\|PILER-CR,CRT	160168-160208	41	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160168-160208	0	1.0
NZ_CP010312_2	2.3\|160245\|40\|NZ_CP010312\|PILER-CR,CRT	160245-160284	40	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160245-160284	0	1.0
NZ_CP010312_2	2.4\|160321\|37\|NZ_CP010312\|PILER-CR,CRT	160321-160357	37	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160321-160357	0	1.0
NZ_CP010312_2	2.5\|160394\|39\|NZ_CP010312\|PILER-CR,CRT	160394-160432	39	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160394-160432	0	1.0
NZ_CP010312_2	2.6\|160469\|38\|NZ_CP010312\|PILER-CR,CRT	160469-160506	38	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160469-160506	0	1.0
NZ_CP010312_2	2.7\|160543\|38\|NZ_CP010312\|PILER-CR,CRT	160543-160580	38	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160543-160580	0	1.0
NZ_CP010312_2	2.8\|160617\|37\|NZ_CP010312\|PILER-CR,CRT	160617-160653	37	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160617-160653	0	1.0
NZ_CP010312_2	2.9\|160690\|38\|NZ_CP010312\|PILER-CR,CRT	160690-160727	38	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160690-160727	0	1.0
NZ_CP010312_2	2.10\|160764\|39\|NZ_CP010312\|PILER-CR,CRT	160764-160802	39	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160764-160802	0	1.0
NZ_CP010312_2	2.11\|160839\|40\|NZ_CP010312\|PILER-CR,CRT	160839-160878	40	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160839-160878	0	1.0
NZ_CP010312_2	2.12\|160096\|36\|NZ_CP010312\|CRISPRCasFinder	160096-160131	36	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160096-160131	0	1.0
NZ_CP010312_2	2.13\|160169\|40\|NZ_CP010312\|CRISPRCasFinder	160169-160208	40	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160169-160208	0	1.0
NZ_CP010312_2	2.14\|160246\|39\|NZ_CP010312\|CRISPRCasFinder	160246-160284	39	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160246-160284	0	1.0
NZ_CP010312_2	2.15\|160322\|36\|NZ_CP010312\|CRISPRCasFinder	160322-160357	36	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160322-160357	0	1.0
NZ_CP010312_2	2.16\|160395\|38\|NZ_CP010312\|CRISPRCasFinder	160395-160432	38	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160395-160432	0	1.0
NZ_CP010312_2	2.17\|160470\|37\|NZ_CP010312\|CRISPRCasFinder	160470-160506	37	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160470-160506	0	1.0
NZ_CP010312_2	2.18\|160544\|37\|NZ_CP010312\|CRISPRCasFinder	160544-160580	37	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160544-160580	0	1.0
NZ_CP010312_2	2.19\|160618\|36\|NZ_CP010312\|CRISPRCasFinder	160618-160653	36	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160618-160653	0	1.0
NZ_CP010312_2	2.20\|160691\|37\|NZ_CP010312\|CRISPRCasFinder	160691-160727	37	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160691-160727	0	1.0
NZ_CP010312_2	2.21\|160765\|38\|NZ_CP010312\|CRISPRCasFinder	160765-160802	38	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160765-160802	0	1.0
NZ_CP010312_2	2.22\|160840\|39\|NZ_CP010312\|CRISPRCasFinder	160840-160878	39	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160840-160878	0	1.0
NZ_CP010312_2	2.23\|160916\|36\|NZ_CP010312\|CRISPRCasFinder	160916-160951	36	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160916-160951	0	1.0
NZ_CP010312_2	2.24\|160915\|37\|NZ_CP010312\|CRT	160915-160951	37	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160915-160951	0	1.0
NZ_CP010312_2	2.25\|160988\|37\|NZ_CP010312\|CRT	160988-161024	37	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	160988-161024	0	1.0
NZ_CP010312_2	2.26\|161061\|29\|NZ_CP010312\|CRT	161061-161089	29	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	161061-161089	0	1.0
NZ_CP010312_2	2.27\|161126\|40\|NZ_CP010312\|CRT	161126-161165	40	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	161126-161165	0	1.0
NZ_CP010312_2	2.26\|161061\|29\|NZ_CP010312\|CRT	161061-161089	29	NC_048053	Dickeya phage vB_DsoM_JA29, complete genome	32991-33019	7	0.759

1. spacer 1.1|115488|31|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

ctttagagacggaaagggtgcttctgtaccc	CRISPR spacer
ctttagagacggaaagggtgcttctgtaccc	Protospacer
*******************************

2. spacer 2.1|160095|37|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

cctggccgcaggcatcaagcccgaaaaacagtgggtc	CRISPR spacer
cctggccgcaggcatcaagcccgaaaaacagtgggtc	Protospacer
*************************************

3. spacer 2.2|160168|41|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

cgagcccctcacaggacaagggcgccagatcatgcatagat	CRISPR spacer
cgagcccctcacaggacaagggcgccagatcatgcatagat	Protospacer
*****************************************

4. spacer 2.3|160245|40|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

cagcaagaattcttggttaatgtgaggcgcgtagattcag	CRISPR spacer
cagcaagaattcttggttaatgtgaggcgcgtagattcag	Protospacer
****************************************

5. spacer 2.4|160321|37|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

ccatacttggcgtcgccgaaatagtcatgtatcgcat	CRISPR spacer
ccatacttggcgtcgccgaaatagtcatgtatcgcat	Protospacer
*************************************

6. spacer 2.5|160394|39|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

cagatgtttacctttaaataagggcgaaaaacgaccttt	CRISPR spacer
cagatgtttacctttaaataagggcgaaaaacgaccttt	Protospacer
***************************************

7. spacer 2.6|160469|38|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

cacccttcttcaaattaacgcagtaccggttttgaccg	CRISPR spacer
cacccttcttcaaattaacgcagtaccggttttgaccg	Protospacer
**************************************

8. spacer 2.7|160543|38|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

cagtcaatcctttagtgagatagagcttctgcgcggca	CRISPR spacer
cagtcaatcctttagtgagatagagcttctgcgcggca	Protospacer
**************************************

9. spacer 2.8|160617|37|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

cctcgacgagcagtaggccctgattacccatcgacct	CRISPR spacer
cctcgacgagcagtaggccctgattacccatcgacct	Protospacer
*************************************

10. spacer 2.9|160690|38|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

caagtatttccctcgcttcgatggaaagagaaattcac	CRISPR spacer
caagtatttccctcgcttcgatggaaagagaaattcac	Protospacer
**************************************

11. spacer 2.10|160764|39|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

tacgtgtttttggcggatgggaccgggcgcaaggcaaat	CRISPR spacer
tacgtgtttttggcggatgggaccgggcgcaaggcaaat	Protospacer
***************************************

12. spacer 2.11|160839|40|NZ_CP010312|PILER-CR,CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

ctagcgcaagctagtgccatcgatcatacgatgcttaggg	CRISPR spacer
ctagcgcaagctagtgccatcgatcatacgatgcttaggg	Protospacer
****************************************

13. spacer 2.12|160096|36|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

ctggccgcaggcatcaagcccgaaaaacagtgggtc	CRISPR spacer
ctggccgcaggcatcaagcccgaaaaacagtgggtc	Protospacer
************************************

14. spacer 2.13|160169|40|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

gagcccctcacaggacaagggcgccagatcatgcatagat	CRISPR spacer
gagcccctcacaggacaagggcgccagatcatgcatagat	Protospacer
****************************************

15. spacer 2.14|160246|39|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagaattcttggttaatgtgaggcgcgtagattcag	CRISPR spacer
agcaagaattcttggttaatgtgaggcgcgtagattcag	Protospacer
***************************************

16. spacer 2.15|160322|36|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

catacttggcgtcgccgaaatagtcatgtatcgcat	CRISPR spacer
catacttggcgtcgccgaaatagtcatgtatcgcat	Protospacer
************************************

17. spacer 2.16|160395|38|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

agatgtttacctttaaataagggcgaaaaacgaccttt	CRISPR spacer
agatgtttacctttaaataagggcgaaaaacgaccttt	Protospacer
**************************************

18. spacer 2.17|160470|37|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

acccttcttcaaattaacgcagtaccggttttgaccg	CRISPR spacer
acccttcttcaaattaacgcagtaccggttttgaccg	Protospacer
*************************************

19. spacer 2.18|160544|37|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

agtcaatcctttagtgagatagagcttctgcgcggca	CRISPR spacer
agtcaatcctttagtgagatagagcttctgcgcggca	Protospacer
*************************************

20. spacer 2.19|160618|36|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgacgagcagtaggccctgattacccatcgacct	CRISPR spacer
ctcgacgagcagtaggccctgattacccatcgacct	Protospacer
************************************

21. spacer 2.20|160691|37|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

aagtatttccctcgcttcgatggaaagagaaattcac	CRISPR spacer
aagtatttccctcgcttcgatggaaagagaaattcac	Protospacer
*************************************

22. spacer 2.21|160765|38|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

acgtgtttttggcggatgggaccgggcgcaaggcaaat	CRISPR spacer
acgtgtttttggcggatgggaccgggcgcaaggcaaat	Protospacer
**************************************

23. spacer 2.22|160840|39|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

tagcgcaagctagtgccatcgatcatacgatgcttaggg	CRISPR spacer
tagcgcaagctagtgccatcgatcatacgatgcttaggg	Protospacer
***************************************

24. spacer 2.23|160916|36|NZ_CP010312|CRISPRCasFinder matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

tgattggttttggtgattcttgcatacaattgcccc	CRISPR spacer
tgattggttttggtgattcttgcatacaattgcccc	Protospacer
************************************

25. spacer 2.24|160915|37|NZ_CP010312|CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

atgattggttttggtgattcttgcatacaattgcccc	CRISPR spacer
atgattggttttggtgattcttgcatacaattgcccc	Protospacer
*************************************

26. spacer 2.25|160988|37|NZ_CP010312|CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

tggccttctcacaagttgcgaaatctcgatatcacac	CRISPR spacer
tggccttctcacaagttgcgaaatctcgatatcacac	Protospacer
*************************************

27. spacer 2.26|161061|29|NZ_CP010312|CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

atgtgtgaaatatcatactcgccctgatt	CRISPR spacer
atgtgtgaaatatcatactcgccctgatt	Protospacer
*****************************

28. spacer 2.27|161126|40|NZ_CP010312|CRT matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 0, identity: 1.0

acttctggacactctggcgtatccgccgattcgtctgcag	CRISPR spacer
acttctggacactctggcgtatccgccgattcgtctgcag	Protospacer
****************************************

29. spacer 2.26|161061|29|NZ_CP010312|CRT matches to NC_048053 (Dickeya phage vB_DsoM_JA29, complete genome) position: , mismatch: 7, identity: 0.759

atgtgtgaaatatcatactcgccctgatt	CRISPR spacer
agaagtgaaatatcatattcgcccggaag	Protospacer
* . *************.****** **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7079 : 78255

Bacillus_phage(20.0%)

transposase,integrase

attL 47862:47877|attR 74226:74241

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040202731.1\|7079_8276_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A7P9	Microcystis_virus	3.6e-71	42.2
WP_158414117.1\|9675_14070_+	hypothetical protein	NA	NA	NA	NA
WP_040202734.1\|14088_14487_+\|transposase	IS200/IS605 family transposase	A0A0H3UZM0	Geobacillus_virus	1.3e-30	48.0
WP_052465101.1\|14483_15737_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0A8WI33	Clostridium_phage	4.7e-82	44.9
WP_040202735.1\|16097_16379_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_158414118.1\|16419_16998_+	pilus assembly protein	NA	NA	NA	NA
WP_040202737.1\|17402_17933_+	type II secretion system protein	NA	NA	NA	NA
WP_040202738.1\|18029_18479_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_040202739.1\|18550_20767_+	hypothetical protein	NA	NA	NA	NA
WP_040202740.1\|20796_22485_+	hypothetical protein	NA	NA	NA	NA
WP_040202741.1\|22498_23233_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_040202742.1\|23222_24227_+	hypothetical protein	NA	NA	NA	NA
WP_158414119.1\|24189_24489_+	hypothetical protein	NA	NA	NA	NA
WP_040202986.1\|24512_25592_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_040202744.1\|25604_26837_+	type II secretion system F family protein	NA	NA	NA	NA
WP_040202745.1\|26853_27531_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_040202746.1\|27543_29283_+	type II/IV secretion system protein	NA	NA	NA	NA
WP_040202747.1\|29282_30053_+	prepilin peptidase	NA	NA	NA	NA
WP_040202748.1\|30479_31616_+	hypothetical protein	NA	NA	NA	NA
WP_158414120.1\|31687_32509_-	hypothetical protein	NA	NA	NA	NA
WP_040202750.1\|32611_33256_-	hypothetical protein	NA	NA	NA	NA
WP_144402092.1\|34041_36369_+	hypothetical protein	NA	NA	NA	NA
WP_052465103.1\|36395_38225_+	conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_158414121.1\|38145_38748_+	hypothetical protein	NA	NA	NA	NA
WP_040202753.1\|38778_39432_+	DUF4400 domain-containing protein	NA	NA	NA	NA
WP_040202754.1\|39870_40992_+	hypothetical protein	NA	NA	NA	NA
WP_040202755.1\|41027_42320_+	hypothetical protein	NA	NA	NA	NA
WP_040202756.1\|42410_43172_+	DsbC family protein	NA	NA	NA	NA
WP_158414122.1\|43292_43733_+	TraV family lipoprotein	NA	NA	NA	NA
WP_040202989.1\|43735_44047_+	hypothetical protein	NA	NA	NA	NA
WP_084212233.1\|44139_46626_+	type IV secretion system protein TraC	NA	NA	NA	NA
WP_158414123.1\|46663_46966_+	hypothetical protein	NA	NA	NA	NA
WP_084212234.1\|47005_47494_+	signal peptidase I	NA	NA	NA	NA
WP_040202760.1\|47521_47914_+	hypothetical protein	NA	NA	NA	NA
47862:47877	attL	NA	NA	NA	NA
WP_040202761.1\|48013_48754_+	EAL domain-containing protein	NA	NA	NA	NA
WP_158414124.1\|48834_49962_+	hypothetical protein	NA	NA	NA	NA
WP_040202763.1\|50383_51022_+	hypothetical protein	NA	NA	NA	NA
WP_040202764.1\|51037_52189_+	hypothetical protein	NA	NA	NA	NA
WP_040202765.1\|52196_54986_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_040202766.1\|55043_55877_-	hypothetical protein	NA	NA	NA	NA
WP_144402094.1\|56098_57148_-	hypothetical protein	NA	NA	NA	NA
WP_040202768.1\|57298_57574_-	HU family DNA-binding protein	A0A1P8CWT5	Bacillus_phage	1.1e-15	44.9
WP_158414125.1\|57578_58085_-	hypothetical protein	H9YPW9	environmental_Halophage	1.1e-10	44.8
WP_158414126.1\|58179_61023_-	hypothetical protein	NA	NA	NA	NA
WP_040202770.1\|62183_63923_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.9e-69	30.0
WP_040202771.1\|64105_64633_-	hypothetical protein	NA	NA	NA	NA
WP_144402096.1\|64916_65930_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	4.6e-43	35.4
WP_040202772.1\|66048_66477_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	6.9e-09	34.8
WP_052465108.1\|66774_68727_+	EAL domain-containing protein	G3MA91	Bacillus_virus	2.0e-23	35.8
WP_040202773.1\|68745_69843_+	RHS repeat protein	NA	NA	NA	NA
WP_052465109.1\|70350_71835_+	AAA family ATPase	A0A126DN25	Acinetobacter_phage	9.4e-37	27.7
WP_040202774.1\|71859_72327_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.7e-24	41.5
WP_144402130.1\|72335_73259_+	helix-turn-helix domain-containing protein	A0A077SLN2	Escherichia_phage	2.0e-08	25.8
WP_158414127.1\|73255_73747_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	2.6e-20	44.4
WP_040202775.1\|73999_74464_-	hypothetical protein	NA	NA	NA	NA
74226:74241	attR	NA	NA	NA	NA
WP_084212236.1\|74471_76208_-	ATP-dependent helicase	S5M596	Bacillus_phage	3.9e-34	27.7
WP_040202777.1\|76317_77034_-	DUF1845 family protein	NA	NA	NA	NA
WP_040202778.1\|77691_78255_+	single-stranded DNA-binding protein	A0A2I7QRJ7	Vibrio_phage	2.9e-31	60.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010311

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

2. NZ_CP010312

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection