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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010526 Staphylococcus aureus subsp. aureus ST772-MRSA-V strain DAR4145 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,WYL 6 2 13 0

Results visualization

1. NZ_CP010526
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010526_1 406927-407027 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010526_2 703058-703150 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010526_3 927396-927477 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010526_4 1767656-1767739 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010526_5 2019034-2019299 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010526_6 2258057-2258137 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010526_7 2270378-2270463 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010526_8 2371805-2371997 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010526_9 2525033-2525130 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP010526_5 5.3|2019187|20|NZ_CP010526|CRT 2019187-2019206 20 NZ_CP010526.1 2019358-2019377 0 1.0
NZ_CP010526_8 8.2|2371883|36|NZ_CP010526|CRT 2371883-2371918 36 NZ_CP010526.1 1194840-1194875 0 1.0
NZ_CP010526_8 8.2|2371883|36|NZ_CP010526|CRT 2371883-2371918 36 NZ_CP010526.1 1916595-1916630 1 0.972
NZ_CP010526_8 8.3|2371942|33|NZ_CP010526|CRT 2371942-2371974 33 NZ_CP010526.1 1403125-1403157 1 0.97
NZ_CP010526_8 8.3|2371942|33|NZ_CP010526|CRT 2371942-2371974 33 NZ_CP010526.1 2361025-2361057 1 0.97
NZ_CP010526_8 8.3|2371942|33|NZ_CP010526|CRT 2371942-2371974 33 NZ_CP010526.1 2651506-2651538 1 0.97
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 368279-368309 1 0.968
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 1091979-1092009 1 0.968
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 1403129-1403159 1 0.968
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 1733287-1733317 1 0.968
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 2361023-2361053 1 0.968
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 2651504-2651534 1 0.968
NZ_CP010526_4 4.1|1767680|36|NZ_CP010526|CRISPRCasFinder 1767680-1767715 36 NZ_CP010526.1 1733286-1733321 2 0.944
NZ_CP010526_5 5.2|2019127|23|NZ_CP010526|CRT 2019127-2019149 23 NZ_CP010526.1 976412-976434 2 0.913
NZ_CP010526_8 8.2|2371883|36|NZ_CP010526|CRT 2371883-2371918 36 NZ_CP010526.1 1733228-1733263 2 0.944
NZ_CP010526_8 8.3|2371942|33|NZ_CP010526|CRT 2371942-2371974 33 NZ_CP010526.1 227525-227557 2 0.939
NZ_CP010526_8 8.3|2371942|33|NZ_CP010526|CRT 2371942-2371974 33 NZ_CP010526.1 872772-872804 2 0.939
NZ_CP010526_8 8.3|2371942|33|NZ_CP010526|CRT 2371942-2371974 33 NZ_CP010526.1 927735-927767 2 0.939
NZ_CP010526_8 8.3|2371942|33|NZ_CP010526|CRT 2371942-2371974 33 NZ_CP010526.1 2060745-2060777 2 0.939
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 227523-227553 2 0.935
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 293026-293056 2 0.935
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 872770-872800 2 0.935
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 927733-927763 2 0.935
NZ_CP010526_8 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder 2371940-2371970 31 NZ_CP010526.1 2060743-2060773 2 0.935

1. spacer 5.3|2019187|20|NZ_CP010526|CRT matches to position: 2019358-2019377, mismatch: 0, identity: 1.0

aaagtcagcttaaaataaca	CRISPR spacer
aaagtcagcttaaaataaca	Protospacer
********************

2. spacer 8.2|2371883|36|NZ_CP010526|CRT matches to position: 1194840-1194875, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

3. spacer 8.2|2371883|36|NZ_CP010526|CRT matches to position: 1916595-1916630, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

4. spacer 8.3|2371942|33|NZ_CP010526|CRT matches to position: 1403125-1403157, mismatch: 1, identity: 0.97

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** **********************

5. spacer 8.3|2371942|33|NZ_CP010526|CRT matches to position: 2361025-2361057, mismatch: 1, identity: 0.97

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** **********************

6. spacer 8.3|2371942|33|NZ_CP010526|CRT matches to position: 2651506-2651538, mismatch: 1, identity: 0.97

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** **********************

7. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 368279-368309, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

8. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 1091979-1092009, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

9. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 1403129-1403159, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

10. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 1733287-1733317, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

11. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 2361023-2361053, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

12. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 2651504-2651534, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

13. spacer 4.1|1767680|36|NZ_CP010526|CRISPRCasFinder matches to position: 1733286-1733321, mismatch: 2, identity: 0.944

gcacattattgaaagctgacttttggtcagcttcta	CRISPR spacer
gcacattattgtaagctgacttttcgtcagcttcta	Protospacer
*********** ************ ***********

14. spacer 5.2|2019127|23|NZ_CP010526|CRT matches to position: 976412-976434, mismatch: 2, identity: 0.913

cctcaatttctacaaacattgca	CRISPR spacer
cctcaatttctacagacaatgca	Protospacer
**************.*** ****

15. spacer 8.2|2371883|36|NZ_CP010526|CRT matches to position: 1733228-1733263, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

16. spacer 8.3|2371942|33|NZ_CP010526|CRT matches to position: 227525-227557, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgccagcttctg	Protospacer
********** ************.*********

17. spacer 8.3|2371942|33|NZ_CP010526|CRT matches to position: 872772-872804, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgtcagcttctg	Protospacer
********** *********.************

18. spacer 8.3|2371942|33|NZ_CP010526|CRT matches to position: 927735-927767, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgtcagcttctg	Protospacer
********** *********.************

19. spacer 8.3|2371942|33|NZ_CP010526|CRT matches to position: 2060745-2060777, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattatcgtaagctgacttttcgtcagcttctg	Protospacer
******.*** **********************

20. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 227523-227553, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgccagct	Protospacer
************ ************.*****

21. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 293026-293056, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtatgctgactttccgccagct	Protospacer
**********************.**.*****

22. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 872770-872800, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
************ *********.********

23. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 927733-927763, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
************ *********.********

24. spacer 8.4|2371940|31|NZ_CP010526|CRISPRCasFinder matches to position: 2060743-2060773, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattatcgtaagctgacttttcgtcagct	Protospacer
********.*** ******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010526_5 5.2|2019127|23|NZ_CP010526|CRT 2019127-2019149 23 MG969427 Anoxybacillus phage A403, complete genome 23290-23312 2 0.913
NZ_CP010526_7 7.1|2270404|34|NZ_CP010526|CRISPRCasFinder 2270404-2270437 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP010526_7 7.1|2270404|34|NZ_CP010526|CRISPRCasFinder 2270404-2270437 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 5.2|2019127|23|NZ_CP010526|CRT matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 2, identity: 0.913

cctcaatttctacaaacattgca	CRISPR spacer
cctcaatttatagaaacattgca	Protospacer
********* ** **********

2. spacer 7.1|2270404|34|NZ_CP010526|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

3. spacer 7.1|2270404|34|NZ_CP010526|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 55483 : 65353 8 Staphylococcus_phage(66.67%) transposase NA
DBSCAN-SWA_2 642364 : 713099 96 Staphylococcus_phage(68.66%) holin,tRNA,integrase,portal,plate,transposase,tail,terminase,head,capsid attL 687442:687458|attR 717868:717884
DBSCAN-SWA_3 797585 : 805405 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_4 817377 : 831719 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_5 882483 : 901626 24 Staphylococcus_phage(71.43%) terminase,integrase,coat attL 874624:874640|attR 901653:901669
DBSCAN-SWA_6 1021379 : 1073394 52 Streptococcus_phage(33.33%) bacteriocin,protease,tRNA NA
DBSCAN-SWA_7 1093489 : 1101962 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 1442188 : 1482666 37 Staphylococcus_phage(35.71%) lysis,integrase,transposase attL 1449740:1449799|attR 1460580:1461249
DBSCAN-SWA_9 1564181 : 1648224 109 Staphylococcus_phage(83.13%) holin,tRNA,integrase,portal,tail,head,terminase,protease,capsid attL 1589992:1590007|attR 1652380:1652395
DBSCAN-SWA_10 1704849 : 1713161 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_11 1782845 : 1791888 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_12 1921714 : 1934449 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_13 1937608 : 1970529 36 Staphylococcus_phage(90.32%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage