CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010523	Klebsiella variicola strain DSM 15968 chromosome, complete genome	4 crisprs	csa3,cas3,DEDDh,DinG,cas3HD,WYL	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010523_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010523_1

23416-23558

Orphan

Consensus_repeat	Method
CAGTCCGGTAGCCCGGATAAGGCGTCAGCCGCCATCCGGGGAACGACCGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010523_1

>merge|NZ_CP010523|1|23416-23558|CRISPRCasFinder
CAGTCCGGTAGCCCGGATAAGGCGTCAGCCGCCATCCGGGGAACGACCGCCGTGCTTATACCGGCTGCTGATGGTGGGTGAAGCGCGAGGCCAGTCCGGTAGCCCGGATAAGGCGTCAGCCGCCATCCGGGGAACGGCCGCCG

>NZ_CP010523|1|1|23416-23558|CRISPRCasFinder
CAGTCCGGTAGCCCGGATAAGGCGTCAGCCGCCATCCGGGGAACGACCGCCG	TGCTTATACCGGCTGCTGATGGTGGGTGAAGCGCGAGGC
CAGTCCGGTAGCCCGGATAAGGCGTCAGCCGCCATCCGGGGAACGGCCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010523.2\|WP_004150272.1\|26931_27099_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010523.2\|WP_002923283.1\|29003_29291_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|236174
NZ_CP010523.2\|WP_040969886.1\|29441_30035_+\|transcriptional-regulator-UhpA	unknown	unknown	gnl\|CDD\|182408
NZ_CP010523.2\|WP_022064565.1\|19518_20847_-\|D-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235096
NZ_CP010523.2\|WP_004150274.1\|22427_23351_+\|DNA-binding-transcriptional-regulator-DsdC	unknown	unknown	gnl\|CDD\|182231
NZ_CP010523.2\|WP_004145059.1\|26359_26479_-\|type-I-toxin-antitoxin-system-toxin-TisB	unknown	unknown	gnl\|CDD\|275252
NZ_CP010523.2\|WP_019705396.1\|24921_25755_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NZ_CP010523.2\|WP_004181587.1\|23561_24746_-\|multidrug-efflux-MFS-transporter-EmrD	unknown	unknown	gnl\|CDD\|183259
NZ_CP010523.2\|WP_004173858.1\|27311_29000_+\|acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|181257
NZ_CP010523.2\|WP_008806755.1\|18655_19018_+\|DUF202-domain-containing-protein	unknown	unknown	gnl\|CDD\|376882
NZ_CP010523.2\|WP_012967014.1\|20864_22202_-\|D-serine-transporter-DsdX	unknown	unknown	gnl\|CDD\|182147
NZ_CP010523.2\|WP_002923305.1\|18318_18666_+\|DUF202-domain-containing-protein	unknown	unknown	gnl\|CDD\|225060
NZ_CP010523.2\|WP_008806752.1\|14231_14978_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP010523.2\|WP_002923286.1\|27111_27207_+\|ilvB-operon-leader-peptide-IvbL	unknown	unknown	unknown
NZ_CP010523.2\|WP_008806754.1\|16895_18218_+\|6-phospho-alpha-glucosidase	unknown	unknown	gnl\|CDD\|133434
NZ_CP010523.2\|WP_032741475.1\|19092_19515_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188457
NZ_CP010523.2\|WP_002923294.1\|25822_26269_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP010523.2\|WP_032414305.1\|22293_22440_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314750
NZ_CP010523.2\|WP_162500022.1\|30052_31534_+\|signal-transduction-histidine-protein-kinase/phosphatase-UhpB	unknown	unknown	gnl\|CDD\|236945
NZ_CP010523.2\|WP_008806753.1\|15276_16899_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273925

Protein	Function_ID	Function_description	E-value
NZ_CP010523.2\|WP_002923283.1\|29003_29291_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|236174	PRK08178, PRK08178, acetolactate synthase 1 small subunit.	1.75551e-63
NZ_CP010523.2\|WP_040969886.1\|29441_30035_+\|transcriptional-regulator-UhpA	gnl\|CDD\|182408	PRK10360, PRK10360, transcriptional regulator UhpA.	1.59617e-138
NZ_CP010523.2\|WP_022064565.1\|19518_20847_-\|D-serine-ammonia-lyase	gnl\|CDD\|235096	PRK02991, PRK02991, D-serine dehydratase; Provisional.	0
NZ_CP010523.2\|WP_004150274.1\|22427_23351_+\|DNA-binding-transcriptional-regulator-DsdC	gnl\|CDD\|182231	PRK10086, PRK10086, DNA-binding transcriptional regulator DsdC.	0
NZ_CP010523.2\|WP_004145059.1\|26359_26479_-\|type-I-toxin-antitoxin-system-toxin-TisB	gnl\|CDD\|275252	TIGR04459, TisB_tox, type I toxin-antitoxin system toxin TisB. Members of this family are the TisB toxin protein of a type I toxin-antitoxin system, meaning that the antitoxin is a non-coding RNA. TisB is induced by some types of stress (SOS, ciprofloxacin) and appears to induce a persister state by dissipating transmembrane potential, thus depleting ATP. Persister cells, unable to grow until the persister state changes, survive a number of challenges, including exposure to most antibiotics. [Cellular processes, Adaptations to atypical conditions].	0.00943291
NZ_CP010523.2\|WP_019705396.1\|24921_25755_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	6.64912e-39
NZ_CP010523.2\|WP_004181587.1\|23561_24746_-\|multidrug-efflux-MFS-transporter-EmrD	gnl\|CDD\|183259	PRK11652, emrD, multidrug transporter EmrD.	0
NZ_CP010523.2\|WP_004173858.1\|27311_29000_+\|acetolactate-synthase-large-subunit	gnl\|CDD\|181257	PRK08155, PRK08155, acetolactate synthase large subunit.	0
NZ_CP010523.2\|WP_008806755.1\|18655_19018_+\|DUF202-domain-containing-protein	gnl\|CDD\|376882	pfam02656, DUF202, Domain of unknown function (DUF202). This family consists of hypothetical proteins some of which are putative membrane proteins. No functional information or experimental verification of function is known. This domain is around 100 amino acids long.	4.2419e-08
NZ_CP010523.2\|WP_012967014.1\|20864_22202_-\|D-serine-transporter-DsdX	gnl\|CDD\|182147	PRK09921, PRK09921, permease DsdX; Provisional.	0
NZ_CP010523.2\|WP_002923305.1\|18318_18666_+\|DUF202-domain-containing-protein	gnl\|CDD\|225060	COG2149, COG2149, Predicted membrane protein [Function unknown].	3.74673e-38
NZ_CP010523.2\|WP_008806752.1\|14231_14978_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	4.82044e-73
NZ_CP010523.2\|WP_008806754.1\|16895_18218_+\|6-phospho-alpha-glucosidase	gnl\|CDD\|133434	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP010523.2\|WP_032741475.1\|19092_19515_+\|hypothetical-protein	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	5.95235e-18
NZ_CP010523.2\|WP_002923294.1\|25822_26269_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.57732e-15
NZ_CP010523.2\|WP_032414305.1\|22293_22440_+\|hypothetical-protein	gnl\|CDD\|314750	pfam11925, DUF3443, Protein of unknown function (DUF3443). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.	0.00783002
NZ_CP010523.2\|WP_162500022.1\|30052_31534_+\|signal-transduction-histidine-protein-kinase/phosphatase-UhpB	gnl\|CDD\|236945	PRK11644, PRK11644, signal transduction histidine-protein kinase/phosphatase UhpB.	0
NZ_CP010523.2\|WP_008806753.1\|15276_16899_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273925	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0

>NZ_CP010523.2|WP_004150274.1|22427_23351_+|DNA-binding-transcriptional-regulator-DsdC
MDVLKTLGTRLLNGWQLSRLSTFEVAARHESFALAADELALTPSAVSHRINQLEEELGIQLFVRSHRKVELTREGKRVYWALKASLDGLNQEILDIKNQELSGSLTVYSRPSIAQCWLVPALGDFSRRYPAISLTVLTGNDNVNLQRAGIDLAIYFDDAPSSQLSHHFLMDEAIVPVCTPYYARQLQLTSNPASLRHCTLLHDRQAWSNDSGTDEWFSWAQQFGIELPQSSGIGFDRSDLAVIAAMNHVGVAMGRKRLVQKRLESGELIAPFGDMTLKCHQHYYVTTLPGRQWPKIDAFIEWLHSLT
>NZ_CP010523.2|WP_032414305.1|22293_22440_+|hypothetical-protein
MNQKGDLALKVTSKYAMGQINSSFSGSSGVIFLSSRLPFIARSAEWMC
>NZ_CP010523.2|WP_012967014.1|20864_22202_-|D-serine-transporter-DsdX
MESQIWVVSTLLISIVLIVLTIVKLKFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSADVIMVLVGLICGITLFVEVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVPPHPAALFVANKLGADIGTVIVYGLLVGLIASLVGGPLFLRLLGNRLPFKSVPAEFSNLDVREESTLPSLGATLFTVLLPIGLMLVKTVAELNMAQGGTLYTVLEFIGNPITAMFIAVFVAYYILGIRRQMGMGVLLTHTENGFGSIANILLIIGAGGAFNAILKSSGLADSLAVILSNLHMHPILLAWLVALILHAAVGSATVAMMGATAIVAPMLPLYPGVSPEIIAIAIGSGAIGCTIVTDSLFWLVKQYCGASLSETFKYYTTATFIASLLALAATFLLSFII
>NZ_CP010523.2|WP_022064565.1|19518_20847_-|D-serine-ammonia-lyase
MKHADLTTLTATFPLVQDLIALKETTWFNPATTTLAQGLPYVGLTADDVQDAHARLQRFAPYLAEAFPETAASGGIIESEVVAIPAMKRSLEQKFGQPISGDLLLKKDSHLPISGSIKARGGIYEVLTHAEKLALEAGLLTTADDYRKLLTPEFKQFFSQYSIAVGSTGNLGMSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEEDYGVAVEQGRKAAESDPNCFFIDDENSRTLFLGYAVAGERLKAQFAKAGRVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCLFAEPTHSPCMLLGVYTGLHDQIAVQDLGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLDDQTMYDMLGWLATAENIRLEPSALAGMAGPQRVCASQAYHQLQGLSEQQLQQATHLVWATGGGMVPEEEMAQYLAKGR
>NZ_CP010523.2|WP_032741475.1|19092_19515_+|hypothetical-protein
MEAHHCHQPQAFYAQLRQQGLTAIHFIPQLAAGDAALWGEFLCAVFHRWVREDIGRIHILLFSETLSAWCGETLTQPGAPAANSTCYGCPWLRLCRCGEQEDPLCAGYRQFYDLSGPYMRVMRDLRRQQRPPEALMPLLR
>NZ_CP010523.2|WP_008806755.1|18655_19018_+|DUF202-domain-containing-protein
MADKRRARREGDPGLQPERTSLAWFRTLLGYGALMALAIKHSWHRAGLPFWLSIGVLAIVAVILWGYTRRRHLMDVDDSDFLQPRAVRDKFLIALAVLSLAFLFAVTHLQPIVLFIRDMS
>NZ_CP010523.2|WP_002923305.1|18318_18666_+|DUF202-domain-containing-protein
MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREILALLLCLFAGGMAIYGYLRWLNNEKAMRLKQDLPYTRTLLVISILLLAVVAAVMLLVVYGG
>NZ_CP010523.2|WP_008806754.1|16895_18218_+|6-phospho-alpha-glucosidase
MKKFSVVIAGGGSTFTPGIVLMLLANQDRFPLRSLKFYDNDGARQETIAEACKVILKEQAPEIEFSYTTDPQAAFTDVDFVMAHIRVGKYPMREQDEKIPLRHGVLGQETCGPGGIAYGMRSIGGVLELVDYMEKYSPNAWMLNYSNPAAIVAEATRRLRPNAKILNICDMPIGIEGRMAQIVGLKDRKQMRVRYYGLNHFGWWTSIEDLDGNDLMPKLREYVAKYGYVPPSNDPHTEASWNDTFAKAKDVQALDPQTMPNTYLKYYLFPDYVVAHSNPERTRANEVMDHREKNVFSACRAIIAAGKSTAGDLEIDEHASYIVDLATAIAFNTQERMLLIVPNNGAIHNFDADAMVEIPCLVGHNGPEPLTVGDIPHFQKGMMSQQVAVEKLVVDAWEQRSYHKLWQAITLSKTVPSASVAKAILDDLIAANKDYWPELH
>NZ_CP010523.2|WP_008806753.1|15276_16899_+|PTS-transporter-subunit-EIIC
MLSQIQRFGGAMFTPVLLFPFAGIVVGIAIMLRNPMFVGEALTAPDSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVLVSFLTWNYFINAMGMTWGHFFGVDFSVEPTAGSGLTMIAGIKTLDTSIIGAIVISGLVTALHNRYFDKPLPVFLGIFQGSSFVVIVAFLAMIPCAWLTLLGWPKVQLGIESLQAFLRSAGALGVWVYIFLERILIPTGLHHFVYGPFIFGPAVVEGGLQVYWAEHLQAFSQSTEPLKTLFPEGGFALHGNSKVFGSVGIALALYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLAATMATVMYICGVVGNFGGGLLDQFLPQNWIPMFHHHASMMFIQIGIGLCFTALYFVVFRTLILRLNLKTPGREESEIKLYSKADYQAARGKTTAAAAPETRLGQAAGFLQALGGADNIESINNCATRLRIALVDMAKTQSDDVFKALGAHGVVRRGNGIQVIVGLHVPQVRDQLENLMKDSLSTEHTTMTEAVS
>NZ_CP010523.2|WP_008806752.1|14231_14978_-|GntR-family-transcriptional-regulator
MIYKSIADRLRLRLNSADFAIGSPLPGEKKLAEEFGVARMTIRKAIDLLVDWGLVVRRHGSGTFVARKDVHHETSNLTGLAEVLRKQGKEVVSQVLAFEVMPAPPAIASLLRIKIDERIYFSRRVRYVDGKPLMLEDSYMPVKLFRNLSLSHLEGSKFDYIEKECGIIISGNYETLTPVLADKQLARSMNVPEQTPLLRITSLSYSDSGEFLNYSVMFRNASEYQVDYHLRRVQAQSPLAQPPEQHGE
>NZ_CP010523.2|WP_004181587.1|23561_24746_-|multidrug-efflux-MFS-transporter-EmrD
MKRHKNFNLLLMLVLLVAVGQMAQTIYIPAIADMAVALNVREGAVQSVMAAYLLTYGISQLFYGPLSDRVGRRPVILVGMSIFMLATLVAITTHSLPVLIAASAMQGMGTGVGGVMARTLPRDLYEGAQLRHANSLLNMGILVSPLIAPLLGGILDTLWSWRACYAFLLVLCAGVTFSMAKWMPETRPEGAPRTKLLASYKTLFGTGAFNCYLLMLIGGLAGIAVFEACSGVLMGAVLGLSSMAVSILFILPIPAAFFGAWFAGRPNKRFPTLMWQSVICCLLAGLMMWIPGLLGIMTVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLAWLSAMMPQTGQGSLGLLMMLMGLLILLCWLPLASRFTHHQQPV
>NZ_CP010523.2|WP_019705396.1|24921_25755_-|EamA-family-transporter
MTLTVFCILLFAALLHASWNAIVKASGDKMYAAIGVSGSAALIALVMLPFAPQPALASAPYLLASCALQVVYTVLVAKTYQVSDMSQTYPLMRGTAPLLVAAISVLFLGDRLSPLAWLGIGVICLAILAMAFNGRASSRKGIVLALINACFIAGYTLVDGTGVRLAGSALGYTLWTFFMNGFCLLCWAMVARRREASRYLRQHWKKGILGGIGTMGSYGLALWAMTQAPLAVVAALRETSILFGALIAFIVLKEQLMPLRIVAACGIAAGAILLRLA
>NZ_CP010523.2|WP_002923294.1|25822_26269_-|GNAT-family-N-acetyltransferase
MPPLLIAATTPDAPGFAALRIESLEQHFNMLRRLAENWQSGKNRFNAPGETLLGAFVNHQLVGVCGINSDPFSPQPRAGRIRHLYISERYRRRGIGQQLLVSVITHSSAWFDFLNTHAPAQAWPFYERLGFRPVYDEPRVTHRLFCSL
>NZ_CP010523.2|WP_004145059.1|26359_26479_-|type-I-toxin-antitoxin-system-toxin-TisB
MCSLTTGDARMGGMDIIILILKLMVAVLQLLDAVLKQFR
>NZ_CP010523.2|WP_004150272.1|26931_27099_-|hypothetical-protein
MSKNKLNLYKHRFYVFTMDLFSSTKICAKDHSSAQKDRKQKTPPERGFYQHGYRW
>NZ_CP010523.2|WP_002923286.1|27111_27207_+|ilvB-operon-leader-peptide-IvbL
MNATLIASTLLKTAPAAVVVVSVVVVVGNAP
>NZ_CP010523.2|WP_004173858.1|27311_29000_+|acetolactate-synthase-large-subunit
MASSGTTSNTMRFTGAQLVVHLLERQGITMVSGIPGGSILPIYDALSQSTQIRHILARHEQGAGFIAQGMARTEGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIAELPQVISDAFRIAQSGRPGPVWIDIPKDVQSATIELEALPEPGERAPAPAFAPESVREAAAMINAAKRPVLYLGGGVINAPQAIRELAEKANLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNFILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQGDVAEVLAQLNPQIEAQPREEWRQLVADLQREFPCAIPQESDPLSHYGLINAVAACVDDEAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPQRKVICFSGDGSLMMNIQEMATAAENQLDVKIILLNNEALGLVHQQQSLFYQQGVFAATYPGMINFMQIAAGFGLQTCDLNNEVDPQAALQAIIDRPGPALIHVRIDAQQKVYPMVPPGAANTEMVGE
>NZ_CP010523.2|WP_002923283.1|29003_29291_+|acetolactate-synthase-small-subunit
MQKQCDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQGSEHSRIWLLVNDDQRLGQMISQIEKLEDVTKVARNQSDPTMFNKIAVFFE
>NZ_CP010523.2|WP_040969886.1|29441_30035_+|transcriptional-regulator-UhpA
MTTIALIDDHLIVRSGFSQLLGLEADFQVVAEFGSGREALTGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALIEQALNAGARGFLSKRCSPDELIAAVRTVAAGGCYLTPDIAMKLAAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELARRMFDSWQ
>NZ_CP010523.2|WP_162500022.1|30052_31534_+|signal-transduction-histidine-protein-kinase/phosphatase-UhpB
MLSVIGCAFIFAAAWFCLWSISLHLVERADLAVLLFPFGLRLGLMLQCPRGYWPVLLGTEWLLILWLAQEVALAHPIILMTGSLLTLLPVALISRYRQQRDWLTLLRQGGALMAAALLQSLPWLAEGDEGLNALLLTLTGGLTLAPTCLVFWHYLTSTVWRPLGPALVAQPVNWRGRHLIWYLLLFTISLWLQLGLPAELSRFTPFCLALPIIALAWHYGWQGALIATLMNAIALIASQTWHDHPVDLLLSLLAQSLTGLLLGAGIQRLRELNQSLQSELARNRRLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLAPNNASVRQSGQLIEQLSLGVYDSVRRLLGRLRPRQLDDLPLEQAVRSLMREMELEDRGIVSHLDWRINEAGLSENQRVTLFRVCQEGLNNIVKHASASAVTLQGWQQDERLMLVLEDDGCGLPPGSNLQGFGLTGMRERVTALGGTLTISCTHGTRVCVNLPLRYA

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Crispr_ID: NZ_CP010523_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010523_2

816764-816895

Orphan

Consensus_repeat	Method
TACGCCTTATCCGGGCTACCCAACGATGCGTACCCGTAGCCCGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010523_2

>merge|NZ_CP010523|2|816764-816895|CRISPRCasFinder
TACGCCTTATCCGGGCTACCCAACGATGCGTACCCGTAGCCCGGCTGAGCGCAGCGCGAGCCGGGGAAACCTTCCCGGATGGCGGTTACGCCTTATCCGGGCTACCCAACGATGCCTACCCGTAGCCCGGCT

>NZ_CP010523|2|2|816764-816895|CRISPRCasFinder
TACGCCTTATCCGGGCTACCCAACGATGCGTACCCGTAGCCCGGCT	GAGCGCAGCGCGAGCCGGGGAAACCTTCCCGGATGGCGGT
TACGCCTTATCCGGGCTACCCAACGATGCCTACCCGTAGCCCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010523.2\|WP_040968862.1\|820575_822009_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|184975
NZ_CP010523.2\|WP_012967234.1\|805164_805761_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NZ_CP010523.2\|WP_020077973.1\|812428_812818_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP010523.2\|WP_012967245.1\|822128_822857_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP010523.2\|WP_040968867.1\|808495_809674_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NZ_CP010523.2\|WP_008806440.1\|811309_812404_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP010523.2\|WP_012967243.1\|820091_820451_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010523.2\|WP_032731237.1\|816926_817430_-\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP010523.2\|WP_136071171.1\|824072_824411_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010523.2\|WP_040968866.1\|809684_810887_+\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NZ_CP010523.2\|WP_040968863.1\|818032_820042_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|226685
NZ_CP010523.2\|WP_040968864.1\|817419_818031_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP010523.2\|WP_004205298.1\|806084_806414_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
NZ_CP010523.2\|WP_008806428.1\|824457_825441_-\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NZ_CP010523.2\|WP_008806430.1\|822907_823219_+\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179908
NZ_CP010523.2\|WP_008806444.1\|806580_807159_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976
NZ_CP010523.2\|WP_008806443.1\|807182_808499_+\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP010523.2\|WP_008806437.1\|815958_816702_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NZ_CP010523.2\|WP_008806429.1\|823382_824042_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NZ_CP010523.2\|WP_040968865.1\|813024_815898_+\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432

Protein	Function_ID	Function_description	E-value
NZ_CP010523.2\|WP_040968862.1\|820575_822009_-\|6-phospho-beta-glucosidase	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0
NZ_CP010523.2\|WP_012967234.1\|805164_805761_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	1.72233e-125
NZ_CP010523.2\|WP_020077973.1\|812428_812818_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	7.0635e-73
NZ_CP010523.2\|WP_012967245.1\|822128_822857_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.29373e-57
NZ_CP010523.2\|WP_040968867.1\|808495_809674_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NZ_CP010523.2\|WP_008806440.1\|811309_812404_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP010523.2\|WP_032731237.1\|816926_817430_-\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	4.188e-47
NZ_CP010523.2\|WP_040968866.1\|809684_810887_+\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NZ_CP010523.2\|WP_040968863.1\|818032_820042_-\|thioredoxin-family-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	5.20223e-102
NZ_CP010523.2\|WP_040968864.1\|817419_818031_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	7.58053e-54
NZ_CP010523.2\|WP_004205298.1\|806084_806414_-\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	3.38717e-64
NZ_CP010523.2\|WP_008806428.1\|824457_825441_-\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NZ_CP010523.2\|WP_008806430.1\|822907_823219_+\|ASCH-domain-containing-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	5.55844e-63
NZ_CP010523.2\|WP_008806444.1\|806580_807159_+\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	4.73519e-120
NZ_CP010523.2\|WP_008806443.1\|807182_808499_+\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP010523.2\|WP_008806437.1\|815958_816702_+\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	1.01242e-168
NZ_CP010523.2\|WP_008806429.1\|823382_824042_+\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	9.93513e-138
NZ_CP010523.2\|WP_040968865.1\|813024_815898_+\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0

>NZ_CP010523.2|WP_008806437.1|815958_816702_+|SDR-family-oxidoreductase
MAIALISGASRGIGRATALLLAQEGYTVAVNYHHNINAATEVVNTIVESGGKATALRADISDEAQVMAMFEAVDRMGEPLTALVNNAGILFTQCTVESLSAERINRVLATNVTGYFLCCREAVKRMAHRHGGKGGAIVNVSSAASRLGAPGEYVDYAASKGAVDTLTTGLALEVAAQGIRVNGVRPGLIYTEMHASGGEPGRVDRVKNSLPMQRGGQPEEVAQAIAWLLSDKASYVTGSFLELAGGK
>NZ_CP010523.2|WP_040968865.1|813024_815898_+|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSQLENRDAFIERHIGPDAQQQQEMLKTVGADSLNALIGQIVPQDIQLATPPQVGDATTEFAALAELKAIAGRNKRFKSYIGMGYTAVQLPPVIQRNMLENPGWYTAYTPYQPEVSQGRLESLLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFDVIVDDADKVLDHQDVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKKGLKLRHAHYFDTLCVEVADKAAVLARAEALQINLRSDIHGAVGITLDEATTREDVLNLFRAIVGDDHGLDIDTLDKDVALDSRSIPAVMLRDDAILTHPVFNRYHSETEMMRYMHALERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPVEQAEGYHQMIAQLSDWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKNGNIDLADLREKAEQAGANLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQNAILNANYIATRLKEAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDFGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQGELVSEWNHPYSRELAVFPAGLHNKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>NZ_CP010523.2|WP_020077973.1|812428_812818_+|glycine-cleavage-system-protein-GcvH
MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYSDGWIFKIKASDEAQVAALLDAAAYEALLEDE
>NZ_CP010523.2|WP_008806440.1|811309_812404_+|glycine-cleavage-system-aminomethyltransferase-GcvT
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPYGLEITVRDDLSLIAVQGPQAKAKAATLFTDAQRQAVEGMKPFFGVQSGDLFIATTGYTGEAGYEIAMPNEQAADFWRGLLDAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWEPADRNFIGREALEMQREKGTEQLVGLVMTEKGVLRGGLPVRFTDSDGNQKEGIITSGTFSPTLGYSIALARVPAGIGDTAVVQIRNREMPVKVTKPGFVRNGKAIV
>NZ_CP010523.2|WP_040968866.1|809684_810887_+|FAD-dependent-2-octaprenylphenol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEKAAPQPLAADAPPALRVSAINAASEKLLTKLDVWREIVAQRASCYHGMEVWDKDSFGRISFDDQSMGFSHLGHIIENAVVHHALWQKAQRCADVTLLAPAELQQVAWGENEAFLSLQDGSMLTARLVVGADGANSWLRNKADIPLTFWDYHHHALVATIRTAEPHQAVARQAFHGEGILAFLPLSDPHLCSIVWSLSPAEAKRMQGADEATFNQALNIAFDNCLGLCQLASEREVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELRRLHAQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFREMFSGSHPAKKFLRDMGLKLADSLPGVKPQLIRQAMGLNDLPAWLR
>NZ_CP010523.2|WP_040968867.1|808495_809674_+|2-octaprenyl-6-methoxyphenyl-hydroxylase
MSVLIVGGGMTGATLALAISRLTGGALPVHLIEAQDPHSSRHPGFDDRAIALAAGTCQQLARIGIWQTLAKRATPIQRVHVSDRGHAGFVNLAAADYGLSALGQVVELHDVGQRLFSLLREAPGVTLHCPAKVEAVSRREESVSLTLEGGEIINGKLLVAADGSRSSLGAHCGISWQQQPYEQIAIIANVSTALPHEGRAFERFTEHGPLAMLPMSQGRCSLVWCHPQSRRDEVQSWSDERFCQALQQAFGWRLGRIPHAGKRSVYPLALTTATRAVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAEMLADAHVARDDVGDYSLLCRYQARRAGDKAATIGVTDGLVHLFANRWAPLVAGRNVGLMAMDLFTPARDALAQRTLGWVPR
>NZ_CP010523.2|WP_008806443.1|807182_808499_+|Xaa-Pro-aminopeptidase
MTQQEFLSRRQALLAQMQPGSAALIFAAPEAVRSADSEYPYRQNSDFWYFTGFNEPEALLVLIKSDETHNHSVLFNRVRDLTAEIWFGRRLGQDAAPAKLGVDRALAFSEINQQLYQLLNGLDAIYFAQGEYAYADEIVFNALEKLRKGSRQNLQAPNSVIDWRPIVHEMRLFKSAEELAVMRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFNRHGARFPSYNTIVGGGENGCILHYTENESELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFSKPQREIYDIVLESLETALELYRPGTSIYEVNQEVVRIMITGLVRLGILKGEIDELIANNAHRPYFMHGLSHWLGLDVHDVGNYDTDRSRVLEPGMVLTVEPGLYIATDADVPAQYRGIGIRIEDDIVITEDGNENLTASVVKKADEIEALMAAARQS
>NZ_CP010523.2|WP_008806444.1|806580_807159_+|YecA-family-protein
MSIQNEMPGYNDVDQLLNQQGVGLTPAEMHGLISGLLCGGNTDSSWLPLVHDLTNEGLAFGHELAQALRNMHSAISDSLDDDGFLFQLYLPEGDAVSVFDRADALAGWVNHFLLGLGVSQPKLDKVKDETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFSRQQPTAPEVRKPTLH
>NZ_CP010523.2|WP_004205298.1|806084_806414_-|cell-division-protein-ZapA
MSAQPVDLQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLEQGRISERPGSKFE
>NZ_CP010523.2|WP_012967234.1|805164_805761_-|5-formyltetrahydrofolate-cyclo-ligase
MTLQPDIPLSRQHIRQQIRERRRALSPEQQRLFAQQAAERMMAWPPVVLAHTVALFLSFDGELDTQPLIDQLWRAGKRVYLPVLHPFSPGNLLFLHYHPQSQLIVNRLKIREPKLDVRDVLPLAELDVLVTPLVAFDVSGQRLGMGGGFYDRTLQNWQQYRLQPVGYAHDCQQVDSLPSEEWDIPLPAVITPGKTWSW
>NZ_CP010523.2|WP_032731237.1|816926_817430_-|protein-disulfide-oxidoreductase
MASKIRRWLRELAVWLLIGAAVSLAVDYFRQPALPQNVSATSLQTLDGRTLDLNAMSQQKPLLLYVWATWCGVCRYTTPSVASLAADGGNVLTVALRSGDNAALEKWLTRKKMTLPTVNDPSGQLARQWDIRVTPTLVVISQGEVKSVTTGWTSGWGMRLRLWLASW
>NZ_CP010523.2|WP_040968864.1|817419_818031_-|thioredoxin-domain-containing-protein
MRAITALLLLCVSAFSFAAPAEKPQSNGNDQLAQLLFNDPNSPRTGAKEPKLTIVSFTDYNCPYCKQFDPLLEKIVHDNPDIQLIVKLLPFKGQSSVNAAKAALSTWRQQPDKFWALHQRLMAKKGYHDDASIAAAQKKTATDDVSIDDKTMDSLKMNLILSQVLNIQGTPATIIGDQMVAGAIPAEDLEGLVKEQLGKARGQ
>NZ_CP010523.2|WP_040968863.1|818032_820042_-|thioredoxin-family-protein
MFMVFRRLLVCLLWLWLPVSQAADSGWLRVADNQHASVRLRAQSGSNGDTRLLLDVALGKGWKTYWRSPGEGGIAPAIAWHTPLEVNWRWPTPQRFDVAGISTQGYHGDVSFPMTLRGKIPPTLSGVLTLSTCSNVCILTDYPFSLDMTAPAGEQFNYDFTRAMGTLPLRDGLTSALSASYVSGKLTVTARRDAGWQQPALFIDSMEDVDFGTPSFTSRGDTLTATVPVTDSWGEAAPDLSGKTLSLVLADSGPAQESQIAIAAGSTAPGLALGWVLLMALAGGLILNVMPCVLPVLAMKLGSLVQTERRERGAVRRQFLASVCGIVVSFLALALMMTALRLGNQALGWGIQFQNPWFIGAMALVMVLFSASLLGLFEIRLSSSASTFLATRGGNGLMGHFWQGAFATLLATPCTAPFLGTAVSVALVAPLPLLWGIFFAMGIGMSLPWLLIVAWPGLAQRLPRPGRWMNHLRVVLGLMMLGSALWLVSLLTIHIGRTPVLTLLVILAIGLLLATAWRYRWRTALRAGALAIVVAGAVAFVAQQDGQGPRRDRVNWQPLSEQAIANGLAEHKRVFIDVTADWCVTCKANKYNVLLRDDIQQALSAPDVVALRGDWSRPSADISQFLTARGNAAVPFNQIYGPGLPQGEILPALLDREQLLATLSAAKGK
>NZ_CP010523.2|WP_012967243.1|820091_820451_-|hypothetical-protein
MIKRQRKAILFVLLACLVVLTCTAQRMAGMHALVMNLTADSPSLQQNPDKAEAPVTPCELSAKSLMAVPPMLFEGALLAITLLLAVLAAIPPRIERQWPPRVISPPRLRVHLRLCVFRE
>NZ_CP010523.2|WP_040968862.1|820575_822009_-|6-phospho-beta-glucosidase
MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITHQVEAGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPQGDETQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGGWTNRKVVNFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPDMQVGCMLAMVALYPYSCKPEDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDAQILREGTCAYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPHVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEADGSINDDYRIDYLRAHVEEMIKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGENL
>NZ_CP010523.2|WP_012967245.1|822128_822857_-|MurR/RpiR-family-transcriptional-regulator
MFSHAAVASLNNLEMMVYHYVIKNRDKVMYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSEFRVRFKLYLEQNEPQQANIGASEIMSFFKSVNNDEFDELLEQAVDIILASERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTNDMARNALAIVLSVSGETEEILRFASQFSLHRCKVMSITSHEHSRLAKLADFNLSWHVPQTRIGGVYDITTQIPVIYILESLGRKLARKIS
>NZ_CP010523.2|WP_008806430.1|822907_823219_+|ASCH-domain-containing-protein
MQANDITFFQRFQEDILAGRKTITIRDAAESHFKPGDVLRVGRYEDDGYFCTIAVTATSTVTLDTLTEQHAQQENMTLEQLRQVIREIYPAEDRFYVIEFKRL
>NZ_CP010523.2|WP_008806429.1|823382_824042_+|hemolysin-III-family-protein
MVRKPLITQGYSLAEEVANSISHGIGLVFGIVGLVLLLVQAVDTNASATAITSYSLYGGSMIMLFLASTLYHAIPHQRAKQWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLTMGWLSLIVVYQLAVKLAVGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQS
>NZ_CP010523.2|WP_136071171.1|824072_824411_+|hypothetical-protein
MATVICGLEIPRWRYAYRGYGYLRPGNPTVVLRLLWLRYSAAWKSHGGATLTVATVICRLEIPLWRCAYCGYGYLPPGNPTVALRLPWLRLSAAWKSHGGATLTVATVFAVK
>NZ_CP010523.2|WP_008806428.1|824457_825441_-|tRNA-modifying-protein-YgfZ
MAFTPFPPRQPSSSARLPLTLMTLDDWALATISGPDSEKYLQGQITADVSNLTDAQHLLAAHCDAKGKMWSNLRVFRRDGGFAWIERRSLRDVQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAAAPVVSEGATSLLWFEHPGERFLLVTDVDTANRVTDALRGEAQLNNSQQWLALNIEAGLPVIDSANSGQFIPQATNLQALGGISFRKGCYTGQEMVARAKFRGANKRALWTLSGTASRVPEAGEDLELKMGDNWRRTGTVLAAVQLDDGQLLVQVVMNNDMEPDSIFRVRDDAGSLRIEPLPYSLEDV

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Crispr_ID: NZ_CP010523_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010523_3

3993417-3993523

Orphan

Consensus_repeat	Method
CCCTCTCCCATAGGGAGAGGGAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010523_3

>merge|NZ_CP010523|3|3993417-3993523|CRISPRCasFinder
CCCTCTCCCATAGGGAGAGGGAGCACACCCTAAAAAAGGCCATTGTCATTGCCTTTTTGCGTTTACCTTGCCCTCACCCCAACCCTCTCCCACAGGGAGAGGGAGCA

>NZ_CP010523|3|3|3993417-3993523|CRISPRCasFinder
CCCTCTCCCATAGGGAGAGGGAGCA	CACCCTAAAAAAGGCCATTGTCATTGCCTTTTTGCGTTTACCTTGCCCTCACCCCAA
CCCTCTCCCACAGGGAGAGGGAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010523.2\|WP_040973862.1\|3988346_3989705_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340870
NZ_CP010523.2\|WP_023339772.1\|3998777_3999866_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP010523.2\|WP_008805590.1\|4001818_4003924_-\|carbon-starvation-protein-CstA	unknown	unknown	gnl\|CDD\|184976
NZ_CP010523.2\|WP_002893903.1\|4001528_4001726_-\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP010523.2\|WP_012542475.1\|3983738_3984974_+\|PucR-family-transcriptional-regulator-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377939
NZ_CP010523.2\|WP_038422257.1\|3979910_3981407_-\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212666
NZ_CP010523.2\|WP_012068431.1\|4000850_4001153_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP010523.2\|WP_008805591.1\|4001127_4001532_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP010523.2\|WP_016160472.1\|3992190_3993390_+\|S-methyl-5-thioribose-kinase	unknown	unknown	gnl\|CDD\|236561
NZ_CP010523.2\|WP_040973864.1\|3987426_3988236_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|223559
NZ_CP010523.2\|WP_008805595.1\|3997111_3998614_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP010523.2\|WP_008805607.1\|3981419_3982028_-\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415
NZ_CP010523.2\|WP_008805596.1\|3995031_3996096_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP010523.2\|WP_162499995.1\|3986354_3987305_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380501
NZ_CP010523.2\|WP_022065136.1\|3982479_3983742_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|236821
NZ_CP010523.2\|WP_023322216.1\|3991060_3992089_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP010523.2\|WP_040973859.1\|3996116_3997115_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP010523.2\|WP_040973866.1\|3984970_3986209_+\|cytosine-deaminase	unknown	unknown	gnl\|CDD\|181713
NZ_CP010523.2\|WP_022065143.1\|3993687_3994929_-\|LVIVD-repeat-containing-protein	unknown	unknown	gnl\|CDD\|227601
NZ_CP010523.2\|WP_012068432.1\|3999923_4000667_+\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500

Protein	Function_ID	Function_description	E-value
NZ_CP010523.2\|WP_040973862.1\|3988346_3989705_+\|MFS-transporter	gnl\|CDD\|340870	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters. Organophosphate:Pi antiporters (OPA) are integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The OPA family is also called solute carrier family 37 (SLC37) in vertebrates. Members include glucose-6-phosphate (Glc6P) transporter (also called translocase or exchanger), glycerol-3-phosphate permease, 2-phosphonopropionate transporter, phosphoglycerate transporter, as well as membrane sensor protein UhpC from Escherichia coli. UhpC is both a sensor and a transport protein; it recognizes external Glc6P and induces transport by UhpT, and it can also transport Glc6P. Vertebrates contain four SLC37 or sugar-phosphate exchange (SPX) proteins: SLC37A1 (SPX1), SLC37A2 (SPX2), SLC37A3 (SPX3), and SLC37AA4 (SPX4). The OPA/SLC37 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.33942e-128
NZ_CP010523.2\|WP_023339772.1\|3998777_3999866_+\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP010523.2\|WP_008805590.1\|4001818_4003924_-\|carbon-starvation-protein-CstA	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP010523.2\|WP_002893903.1\|4001528_4001726_-\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	1.33159e-37
NZ_CP010523.2\|WP_012542475.1\|3983738_3984974_+\|PucR-family-transcriptional-regulator-ligand-binding-domain-containing-protein	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	1.78324e-33
NZ_CP010523.2\|WP_038422257.1\|3979910_3981407_-\|carbohydrate-kinase	gnl\|CDD\|212666	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP010523.2\|WP_012068431.1\|4000850_4001153_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	9.15731e-08
NZ_CP010523.2\|WP_008805591.1\|4001127_4001532_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.5247e-10
NZ_CP010523.2\|WP_016160472.1\|3992190_3993390_+\|S-methyl-5-thioribose-kinase	gnl\|CDD\|236561	PRK09550, mtnK, methylthioribose kinase; Reviewed.	0
NZ_CP010523.2\|WP_040973864.1\|3987426_3988236_+\|inositol-monophosphatase	gnl\|CDD\|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	2.88789e-72
NZ_CP010523.2\|WP_008805595.1\|3997111_3998614_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP010523.2\|WP_008805607.1\|3981419_3982028_-\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	1.57474e-138
NZ_CP010523.2\|WP_008805596.1\|3995031_3996096_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	4.03307e-122
NZ_CP010523.2\|WP_162499995.1\|3986354_3987305_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380501	cd06278, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.47591e-94
NZ_CP010523.2\|WP_022065136.1\|3982479_3983742_+\|cytosine-permease	gnl\|CDD\|236821	PRK11017, codB, cytosine permease; Provisional.	0
NZ_CP010523.2\|WP_023322216.1\|3991060_3992089_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	3.06749e-150
NZ_CP010523.2\|WP_040973859.1\|3996116_3997115_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.06748e-68
NZ_CP010523.2\|WP_040973866.1\|3984970_3986209_+\|cytosine-deaminase	gnl\|CDD\|181713	PRK09230, PRK09230, cytosine deaminase; Provisional.	0
NZ_CP010523.2\|WP_022065143.1\|3993687_3994929_-\|LVIVD-repeat-containing-protein	gnl\|CDD\|227601	COG5276, COG5276, Uncharacterized conserved protein [Function unknown].	5.2802e-149
NZ_CP010523.2\|WP_012068432.1\|3999923_4000667_+\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	8.6298e-87

>NZ_CP010523.2|WP_016160472.1|3992190_3993390_+|S-methyl-5-thioribose-kinase
MSQYHTFTAHDAVAYAQQFAGIDNPSELVSAQEVGDGNLNLVFKVFDRQGVSRAIVKQALPYVRCVGESWPLTLDRARLEAQTLVAHYQHSPQHTVKIHHFDPELAVMVMEDLSDHRIWRGELIANVYYPQAARQLGDYLAQVLFHTSDFYLHPHEKKAQVAQFSNPAMCEITEDLFFNDPYQIHERNNYPAELEADVAVLRDDAQLKLAVAALKHRFFAHAEALLHGDIHSGSIFVAEGSLKAIDAEFGYFGPIGFDIGTAIGNLLLNYCGLPGQLGIRDAAAAREQRLNDIHQLWTTFAERFQALAAEKTRDAALAYPGYASAFLKKVWADAVGFCGSELIRRSVGLSHVADIDTIQDDAMRHECLRHAITLGKALIVLAERIDSVDELLARVRQYS
>NZ_CP010523.2|WP_023322216.1|3991060_3992089_-|S-methyl-5-thioribose-1-phosphate-isomerase
MQTLQTTSLRVSENQLFILDQQALPQEKRWLAADNVALLVDHIHALRVRGAPLIGLSASLLLALLAQRGLNRDALQQALETLRAARPTAVNLMNNLDRMKQALAREDYPQALEAEALRLVEEDKQLCDRIAEAGSALVKPGSRLLTHCNTGGLATAGVGTALGVIALAHRQGKVASVWVDETRPLLQGGRLTAWELGELGVPYQLITDSMAASLMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAHYHQIPFYVAAPQTTLDRHCPNGAAIPIEQRAAAEVTGVAGSFGAVQWAPTGAAVYNPAFDVTPAGLVSGWVLDSGVVTPAQVAAGAFAPDNG
>NZ_CP010523.2|WP_040973862.1|3988346_3989705_+|MFS-transporter
MSGIIAFFRASPPKAGAAFDEHRFRRVRWQTFIAMTLAYVTFYVCRLSFTVAKSALVDLGITPTELGMIGSTLFFSYAIGKLVNGFIADHANVVRYMSLGLLLSAGMNLMMGMTTNALLLAIFWGINGWAQSMGVGPCAVSLARWYGVKERGTFYGIWSTAHNIGEAVTYMVIAAVIAGFGWQMGYLSTAALGAAGVVLLVLFMHDSPQSSGFPSINVIRDEPQEEAEARGSVFKNQLLALRNPALWTLALASAFMYIDRYAVNSWGIFFLEQDKAYSTLEASGIIGVNAIAGIAGTIIAGMLSDRFFPRNRSVMAGFISLLNTAGFALMLWSPHNYYTDILAMIIFGATIGALTCFLGGLIAVDISSRKAAGAALGTIGIASYAGAGLGEFLTGIIIDKTAILENGKTLYDFSTLALFWVGTGLGSALLCFTTAAIVARRHAVERQTSFSS
>NZ_CP010523.2|WP_040973864.1|3987426_3988236_+|inositol-monophosphatase
MQSQESEALQARYRLACELAKAGAELAFEYYQQREALTVDHKGNDLQDVVSVADKRVEAFVKQRIQSAFPQDGFLGEESGTRLPDARVLWVVDPIDGTSCFLNGLHTWCLSLAIVADGEPVIGVVYDPNHRELFHALRGHGAWLNDAPIRPHPATTVKEGVMGVGTSHRVTPADFLPFLQALLSDGGMFIRNGSGALMSAWAAAGRLIGYYEPHMNPWDALPGLVLMREAGGASNDFLAQEGIQRGNPLLLASQTLYPQLKKMIPQPLH
>NZ_CP010523.2|WP_162499995.1|3986354_3987305_+|substrate-binding-domain-containing-protein
MARLAGVSRSAVSRTFTPGASVSEKTRQKVLSAAEALGYQVNIIARTMITGSSNFIGIVTAGFDNPFRSKLLAPLVHQLALNGFMPLLMNADDPQQLAPSLKQLLSYHVAGVIITSGAPPLSLAEEYLARKIPVTLINRHADLAGCDRVCSDNAQGAKLVADLFSRRGWQQVGFIGENRENFSTRQRYEAFIARTSGMAVISRFCDGGGYQAGYQAARELVAENPGVQALFCATDMLALGALDGLRDAPAPLPAIVGFDDIPQADWQPYQLTTVQQNTALLAHHAVDLLMTRIARFSLPSRHREVPVKLIIRHSAK
>NZ_CP010523.2|WP_040973866.1|3984970_3986209_+|cytosine-deaminase
MKIINARLRRQEALFTLDLQDGMIHRISAQAAMQSADAGDIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALKALLAVKQEAADLIDLQIVAFPQEGIESYPDGRGLMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARMRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPA
>NZ_CP010523.2|WP_012542475.1|3983738_3984974_+|PucR-family-transcriptional-regulator-ligand-binding-domain-containing-protein
MSLTVSELLALEGLSALRLRAGKQGLQRAVRWYYVAENEHIAEWIMGGELVFITGINHPRDEANLIQLLMEGKQRGIAGMVILTGEAYIHAIPATLIALADELGIPLIEQPYLLKMVIVTERIGTALVRSENALQSQRDILMQLVTGDYPDLQMLHQRALHQQLDFTRPLRLAALRLEGLSRLFRQFPPEQAEAWLLQAHRSVRQQLQQQLNQQGNPFPLLERSNMFLFLLPDEEGEGFQQKKWLQQWLQALADGEEGLSLLCGLSAPVRQLQGYPRALSQARQALDLCDTLRPTQRISDYQQLGFIKLLSAVSDPALLNDFMHDTLGCLIEPGRKAPWLLLETLETLLQENGNVVRAADRLGLHRNTLHQRIQRIEKLTGYPVSHPQFHLNASVALVIWRLSQNHLQDPP
>NZ_CP010523.2|WP_022065136.1|3982479_3983742_+|cytosine-permease
MSNSNDFPLVEAPAAGRKGVFSIAMVLFSFTFFTGTMFAGGKLGVSFSIVNLLWIAVIGNALLALYAASLGWIAARSGLNTVLMGRFCFGEIGSKLADFILGFAELGWYAWGTATVAISLVKILALPEALTQPLMVLFGILFCVTALVGYKGLDALSRLSVPLMFVLLMVSMYLALHHAGGWQAMTRIAPSDTMTWSAAITMVFGTFASGATQATNWTRLANSSRTAILASMGSFLIGNGLMIVAGAWCAIVYQQADIVEVLILQGLSVAAVIMLCLNLLTIQGPTIYNVSAAACHLLRSERRRTLTLAAAGVGIVLAIGGMYEMLIPFLVLLGSIIPPIGGVILADYWFARGGRYPLLQNARLPRFNWLGLGAYAAGAVVAYLSPWIAPLVGITVSALVYIVLSLLSKRQPAAVAEQEP
>NZ_CP010523.2|WP_008805607.1|3981419_3982028_-|methylthioribulose-1-phosphate-dehydratase
MWQERLAQLVTTCHWIGAKGWAPATGGNMSVRQDDTWCWLSESGRDKGSLTTEDFLQVEIATNQAPSGRKPSAETGLHTLVYRLFPEANVVLHVHTVNATVLSRIEKSDTLALQGYEMQKTLSGQHSHLDTVPVAIFDNDQDIDALAARIADYAQTRPLRYGFLLRGHGLTCWGKDIQEARRQLEGLEFLFECELMRRRYEP
>NZ_CP010523.2|WP_038422257.1|3979910_3981407_-|carbohydrate-kinase
MDFYLGIDIGTSRVKAVLFDQHFTACASAAENTSPRLSANGYAEQDMTQLWHSVLAILRQIARHPALQAGRLRAIGLAGQGEGVWLSDEQGEPVGPGILWSDTRSHELMSDLLRRPGFDRRYFADTGTHLQPCNTSLQLYWLKQYQPARLAAARYLFFAKDWIRFRLTGVAALELTDASSSLLNQQTGSWSSVVMNEMGLNELLPLFPPLLAPDAPAGTLSDAVAALTGLPAATPVAAGALDVCSAALGCGAVNEGDIYTILGTTCCTGIVCRGPQTVNEATRFVTHTEAGQVISLFPMQAGTPNIDWLQQHISLDADLDRLEQAIAEVEPGSGGVFWQPYLNGERAPFYSPDARAGFFGISPHTTRAELQRAVFEGLAFAIVDALQGYPQGGELYLTGGGAASATWLQIIADCTGRTVVSSAFNELSARGAAILAARSVAALAETPPLAQTRYQPRPQAHARYAALYPVYRLLREQMLPVWQARQAALQPLSQDVQP
>NZ_CP010523.2|WP_022065143.1|3993687_3994929_-|LVIVD-repeat-containing-protein
MSALPSPEYSRNMRLIGHSDQGGRPDGVQLMVHRGFAYIGHMVSQGFSVVDVRDPTRPTTVNYIAAPPGTWNVHLQAHDDLLLVINARDLFADARFADEKVYYTRSVGDTVSDVQDKGWSAGLRIFDISTPAQPREISFLSLNGIGIHRIWYVGGRWAYVSALIDGFTDYIFLTIDLADPRKPEVAGRWWLPGMHQAGGETPDWPQGKRYALHHAIIAGDTAYGSWRDGGLTLLDVKDRTQPTLISHRNWSPPFGGGTHTALPLPDRDLLVVLDEAVLDNQEDGEKLIWLFDIREPANPVSISTFPQPDEIDYVAKGAHFGPHNLHENRPGSFVSSTLIFATYQNAGVRAYDISNPYRPLETGALVPAAPKTMMDTRPGRPQVIQSCDVFVDAQGIIYSTDYNGGLSVIEYLG
>NZ_CP010523.2|WP_008805596.1|3995031_3996096_-|sugar-ABC-transporter-substrate-binding-protein
MKKIALSLMTLGLLQSTAALATAPTPVPAAIAEHSGPIRIAVIRNLGSDDNTTQFVSGALQEGKKLGFKISTFLSNGDDAKFQDFVNQAISQKYDGIILSQGRDPYSTALVKKAVDAGIKVAVFDTAVSGEIPGVTVSQQDDASLTELSFGQLVKDFNGKANIVKLWVAGFPPMERRQAAYQTLLKQNPGIKELESIGAVSSDVQGDTANKVGAILAKYPKGKIDAIWGTWDAFSQGAYKALKENGRTEIKLYSIDISNQDLQLMREAGSPWKVSVAVDPKLIGATNVRLIANKIAGEPTPATYDFKAAAIPQALLAAQPGAVNVASLGKIIPGWGQTEDFIAPWFATLEAKNK
>NZ_CP010523.2|WP_040973859.1|3996116_3997115_-|ABC-transporter-permease
MSKALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVISLFVWHGLGTTEAILITLALCTLVGLFNAFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMVLPSGEMAEGIIPAGFGALGQVPTIVIIMLVVTMVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAGALALTYFQRRT
>NZ_CP010523.2|WP_008805595.1|3997111_3998614_-|sugar-ABC-transporter-ATP-binding-protein
MSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHYEGEVTINNQPVTIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIMLDRLAEPGMAFRWSRVRQLAREALAQLDVALDVRRSIDSCTLAEKQQILLARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQQQGIGVVFISHRIHELKAICDTLTVLRDGRLIESGPMAPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQIDGLHDEALLQDISLRLRKGEILGIAGLAGAGKTELCKALFGASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEGIFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIARLGVRATGPGQMLRRLSGGNQQKVAIGKWLRSHANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGLCDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA
>NZ_CP010523.2|WP_023339772.1|3998777_3999866_+|oxidoreductase
MSNSDIRVVPGPANYFSHPGSLERLSDFFSADQLSRAVWVYGERALAGAEPFLPAAFHLPDAKKIRFTGHCSERDVAALVQASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIAATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIILNAPAEYLLAGIGDTLAKWYEAVVLAPQPEALPLTVRLGINGALAIRDVLLASSETALADQRRGDLTQAFRDVVEAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLAQDDVLAQLVQAYQRFNLPTTLAALEVDINNRTELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYFSR
>NZ_CP010523.2|WP_012068432.1|3999923_4000667_+|3-oxoacyl-ACP-reductase-FabG
MQIDLTGKKALVTGASRGLGRAIALSLARAGADVVITYEKSADKAQAVADEIKALGRHGEAVQADSASAQAIQEAVTHAARSLGGLDILVNNAGIARGGPLESMTLADIDALINVNIRGVVIATQEALVHMADGGRIINIGSCLANRVAMPGIAVYAMTKSALNALTRGLARDLGPRGITVNLVHPGPTNSDMNPEDGEQAEAQRQMIAVGHYGQPEDIAAAVTFLASPAAGQISGTGLDVDGGLNA
>NZ_CP010523.2|WP_012068431.1|4000850_4001153_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIVWSKTADKPFSKIDNRYKSRIKSRLEKMDDKASSISDIKKLSSPENHYRLRLGDYRVIYTFGDPPGDTCYVVAVKRRTTTTYLHEEDTEYDYSVHQG
>NZ_CP010523.2|WP_008805591.1|4001127_4001532_+|helix-turn-helix-transcriptional-regulator
MTIQYIKDEEGKDQYVVIPYSDYFRMRLALLEYDDEDESDWEDIPYESDIYDNVMLPGEVCDVMHKENVSLQAAWRILRGLSQQEVAAKLGISQSAVSQLEALDSRPQKRTREKLAAIYGCTQEQISLYLPKEG
>NZ_CP010523.2|WP_002893903.1|4001528_4001726_-|YbdD/YjiX-family-protein
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC
>NZ_CP010523.2|WP_008805590.1|4001818_4003924_-|carbon-starvation-protein-CstA
MNNSGKYLIWTLLSVIGAFALGYIALNRGEQINALWIVVAAVCVYLIAYRFYGLYIAKTVLGVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWILAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVLALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYIRYLRPGRIGEVSVIGLVMLVFAIISGGWVAESPTWAPWFDYTGVQLTWILVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAIGILIMRPTLTMPALTKFVDGTGPVWSGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVAACIIDPGVYFAMNSPMAVLAPAGTTDVVASAAQVVSGWGFSITPDTLHQIASEVGEQSIISRAGGAPTLAVGMAYILHGSLGGLMDVSFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVISPGLKKTSSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALLPTSWLLICTLTAGWQKSFSPDTKVGFLAIANKFQAMIDSGNIPPQYTESQLAQLVFNNRLDAGLTIFFMIVVVVLALFSIKTALAALKEDKPTAKETPYQAMPADAQTITAQAKRAH

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Crispr_ID: NZ_CP010523_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010523_4

4714996-4715120

Orphan

Consensus_repeat	Method
GTTTGCTCCCTCTCCCACCGGGAGAGGGTTGGGGTGAGGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010523_4

>merge|NZ_CP010523|4|4714996-4715120|CRISPRCasFinder
GTTTGCTCCCTCTCCCACCGGGAGAGGGTTGGGGTGAGGGCAAGGTAAATGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGGGTTTGCTCCCTCTCCCACCGGGAGAGGGTTGGGGTGAGGGCAA

>NZ_CP010523|4|4|4714996-4715120|CRISPRCasFinder
GTTTGCTCCCTCTCCCACCGGGAGAGGGTTGGGGTGAGGGCAA	GGTAAATGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGG
GTTTGCTCCCTCTCCCACCGGGAGAGGGTTGGGGTGAGGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010523.2\|WP_008807518.1\|4710708_4711038_-\|trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
NZ_CP010523.2\|WP_040972824.1\|4711126_4713064_-\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
NZ_CP010523.2\|WP_002887800.1\|4716389_4717772_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
NZ_CP010523.2\|WP_008807515.1\|4708579_4709449_+\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	unknown	unknown	gnl\|CDD\|185076
NZ_CP010523.2\|WP_040972827.1\|4705770_4707195_-\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_CP010523.2\|WP_002887802.1\|4715135_4716368_-\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	unknown	unknown	gnl\|CDD\|236151
NZ_CP010523.2\|WP_008807517.1\|4710206_4710722_+\|inosine/xanthosine-triphosphatase	unknown	unknown	gnl\|CDD\|235336
NZ_CP010523.2\|WP_008807516.1\|4709445_4710093_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	unknown	unknown	gnl\|CDD\|179583
NZ_CP010523.2\|WP_012542917.1\|4707896_4708370_-\|protein-CreA	unknown	unknown	gnl\|CDD\|236752
NZ_CP010523.2\|WP_022065752.1\|4722708_4724031_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP010523.2\|WP_032731599.1\|4707194_4707884_-\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
NZ_CP010523.2\|WP_012542920.1\|4718857_4719505_+\|YtjB-family-periplasmic-protein	unknown	unknown	gnl\|CDD\|236885
NZ_CP010523.2\|WP_012968984.1\|4713292_4714960_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP010523.2\|WP_040972806.1\|4724144_4724945_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NZ_CP010523.2\|WP_004886539.1\|4720610_4721330_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP010523.2\|WP_022065753.1\|4725339_4726125_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|171118
NZ_CP010523.2\|WP_040972829.1\|4704351_4705710_-\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|236960
NZ_CP010523.2\|WP_040972809.1\|4719504_4720521_+\|lipoate--protein-ligase-LplA	unknown	unknown	gnl\|CDD\|179655
NZ_CP010523.2\|WP_016160264.1\|4721432_4722656_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP010523.2\|WP_016160266.1\|4717781_4718753_-\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988

Protein	Function_ID	Function_description	E-value
NZ_CP010523.2\|WP_008807518.1\|4710708_4711038_-\|trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	2.25263e-51
NZ_CP010523.2\|WP_040972824.1\|4711126_4713064_-\|murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
NZ_CP010523.2\|WP_002887800.1\|4716389_4717772_-\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP010523.2\|WP_008807515.1\|4708579_4709449_+\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	0
NZ_CP010523.2\|WP_040972827.1\|4705770_4707195_-\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_CP010523.2\|WP_002887802.1\|4715135_4716368_-\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	gnl\|CDD\|236151	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR.	0
NZ_CP010523.2\|WP_008807517.1\|4710206_4710722_+\|inosine/xanthosine-triphosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	7.98477e-112
NZ_CP010523.2\|WP_008807516.1\|4709445_4710093_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	6.63469e-161
NZ_CP010523.2\|WP_012542917.1\|4707896_4708370_-\|protein-CreA	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	4.50228e-120
NZ_CP010523.2\|WP_022065752.1\|4722708_4724031_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP010523.2\|WP_032731599.1\|4707194_4707884_-\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	4.50535e-156
NZ_CP010523.2\|WP_012542920.1\|4718857_4719505_+\|YtjB-family-periplasmic-protein	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	1.09556e-147
NZ_CP010523.2\|WP_012968984.1\|4713292_4714960_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP010523.2\|WP_040972806.1\|4724144_4724945_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
NZ_CP010523.2\|WP_004886539.1\|4720610_4721330_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	5.29166e-174
NZ_CP010523.2\|WP_022065753.1\|4725339_4726125_-\|TatD-family-hydrolase	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	3.80038e-150
NZ_CP010523.2\|WP_040972829.1\|4704351_4705710_-\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	0
NZ_CP010523.2\|WP_040972809.1\|4719504_4720521_+\|lipoate--protein-ligase-LplA	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
NZ_CP010523.2\|WP_016160264.1\|4721432_4722656_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP010523.2\|WP_016160266.1\|4717781_4718753_-\|phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0

>NZ_CP010523.2|WP_012968984.1|4713292_4714960_+|energy-dependent-translational-throttle-protein-EttA
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEARPQPGIKIGYLPQEPQLNPEHTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNVEYQKRNETNELFIPPGARLGDKVLEVSHLRKSYGDRVLIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK
>NZ_CP010523.2|WP_040972824.1|4711126_4713064_-|murein-transglycosylase
MEKAKKMAWRLLAASVGLLTLSQLAHADSLDEQRNRYAQIKQAWDNRQMDVVDQLMPTLSTYPLYPYLQYRQITDDLMNQPALVVKNFIDANPTLPPARSLRSRFVNELARRSDWRGLLAFSPDKPTSTEAQCNYYYAKLSVGQSQEAWSGAKDLWLTGKNQPGACEPLFSAWRDSGQQDPLAYLERIRLAMKAGNIGLVKSLAQQMPGNYQSIASAVVALANDPNSVLTFARTTGATDFTRQMAAVAFASVARQDVENARLMIPSLVQAQQLNEDQTQELRDIVAWRLMGTDVTEEQAIWRDDAIMRSQSTPLVERRVRMALGTGDRHGLNTWLARLPMEAKEKDEWRYWQADLLLERGRDEEAQAILRSLMQQRGFYPMVAAQRLGEEYTFRIDKASGTIDPALASGPEMARVRELMYWNMDNTARTEWANLVTSRTKSQQAQLARYAFDQHWWDLSVQATIAGKLWDQLEERFPLAYNDLFARYISGKDIPQSYAMAIARQESAWNPKVRSPVGASGLMQIMPGTATHTVSMFSIPGYSGPSQLLDPETNINIGTSYLQYVYQQFGNNRIYASAAYNAGPGRVRTWQGNSAGRIDAVAFIESIPFSETRGYVKNVLSYDAYYRYFMGQQDKLFSDAEWRQRY
>NZ_CP010523.2|WP_008807518.1|4710708_4711038_-|trp-operon-repressor
MTQQSPYSAAVAEQRHQEWLRFVALLQQAYAEDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKSAPAELRQWLEQTLLASDK
>NZ_CP010523.2|WP_008807517.1|4710206_4710722_+|inosine/xanthosine-triphosphatase
MHHVVSATTNPAKIQAILQAFNEIFGEGSCHIESVSVESGVPEQPFGSEETRAGARNRVANARLVQPSADFWVAIEAGIDDGSTFSWVVIESADRRGEARSATLPLPEVILEQVRAGEALGPVMSQYTGIDQIGRKEGAIGVFTGGKLTRSSVYHQAVVLALSPFHNAIYR
>NZ_CP010523.2|WP_008807516.1|4709445_4710093_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB
MLQVYLVRHGETQWNAERRIQGQSDSPLTAHGERQAWQVGERARTLGITHIITSDLGRTRRTAEIIAEACGCSVIADARLRELDMGVLEKRHIDSLSDEEEGWRRQLVNGTPDGRIPQGESMQELSERMHAALASCLELPAGSRPLLVSHGIALGCLVSTILGLPAYAERRLRLRNCSISRVDYQQSPWLASGWVVETAGDVSHLDAPAMDELQR
>NZ_CP010523.2|WP_008807515.1|4708579_4709449_+|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA
MDQAGIIRDLLSWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRRSPDWSSFGMRPPLRLGEFTLPKHEFVALPTTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDFLGNSPSIPPVLYGLHEPRPSLEKDDEQEVFYTTALTPEMANGHLQNAHPVTLEGGEYVMFTYEGLGTGLQEFILTVYGTCMPMLNLTRRKGLDIERFYPEDENRDQATPIQLRCEYLIPIRR
>NZ_CP010523.2|WP_012542917.1|4707896_4708370_-|protein-CreA
MKYKKFAMGLLLLAGCQMAQAEQIGSVDTVFKWLGPDHKIVVEAFDDPDVQNVTCYISRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELTDKIKNGKSQGDVVFQKRTSLVFKKLQVVRFYDAKRNALVYLTYSDKVVDGSPKNAISAVPIMPWNK
>NZ_CP010523.2|WP_032731599.1|4707194_4707884_-|two-component-system-response-regulator-CreB
MQQPRIWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFELCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQKFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVWSDAWESLDRTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSLGRG
>NZ_CP010523.2|WP_040972827.1|4705770_4707195_-|two-component-system-sensor-histidine-kinase-CreC
MRIGMRLLLGYFLIVAIAAWFVLSIFVQEVKPGVRGATEGTLNDTATLLAALAREDLLAANPQQGRLAQAFQQLNQQPINAHIGGIKKVRNEYRVYLTDARGKVVFDSSGQATGQDYSRWNDVWLTLRGQYGARSTRSDPHDETSSVMYIAAPVMDKGRIIGVLSVGKPNLAMTPVIKRSERRILWAGGALLGIALLIGVGVVWWINFSIGKLVRYADSVTAERPLPLPEVGSSELRKLAQALESMRVKLEGKNAIENYVYDLTHELKSPLAAIRGAAEILREGPPPAVAARFTDNILAQNTRMQLLVERLLQQARLESRLEIKPQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLDNAIDFTPKGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGLGLAFVREVARLHHGDINLYNRPEGGVVATLRLHRPFT
>NZ_CP010523.2|WP_040972829.1|4704351_4705710_-|cell-envelope-integrity-protein-CreD
MLKSPLFWKITTLIGCVVLLSLPLMMVRELINERADYRSEVVDAIEQSTSGSQKLAGPLIAIPVTETLTRMENQKEVNYQRSWEYYWLPESLAVTGKQTVESRRVGIYSGQVWHNALQIKASFDPLRLAALRKTNIVLGPPRLVVSVGDARGIGAIHAPEVNGNVLSVEPGLGISGDGAGIHMPMPALAEDNKPLEIAFSLDLNGTGEFSLVPIGRNSELQLTSNWPHPGFLGSFLPTQREVSAAGYRAHWQSSWFANDMGSYFKDDMEIPWSRLPAFSADVMSLADQYQLTDRATKYAILLIGLTFMAFFVFESLTRRPLHPMQYLLVGLSLVLFYLVLLALSEHVGFTAAWLAASLSGAVMNGVYLQAVLRGWRNSLLFVAALLLLDGVMWFLLHSEDSALLLGTGVLVLALSVLMFLTRRVDWYALSLPKGSAPPPPAADDDKLRLWKE
>NZ_CP010523.2|WP_002887802.1|4715135_4716368_-|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR
MSSFDYLKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRRQKSVGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRELFEESAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSHGIRAFMSEKGIEPNRIYTSEEADAPQYLEHLGIETVLIDPKRTFMNISGGQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVSTQAFCLKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQSLLVSLLKENEIEFVHVKESDYDARFLRCVELVKQLMGEQG
>NZ_CP010523.2|WP_002887800.1|4716389_4717772_-|DNA-repair-protein-RadA
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEMRIAASPQVARNERLSGYAGNAGVSKVQKLSDISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEGMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIADEEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKVPEGMQIFGVKKLSDALSVFDDL
>NZ_CP010523.2|WP_016160266.1|4717781_4718753_-|phosphoserine-phosphatase
MPNSLTWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLNKRRLTDWQRELGAALVIVASWVVEDYQVIRLAGSLTPRATRLAHEAGLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGELVSEVTERAMRGELDFTASLRQRVATLKDADASILLQVRDALPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVFANELEIRDGKLTGNVLGDIVDAKYKANTLRKLAEKYEIPTAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEQAEVTIRHADLMGVFCILSGSMNQK
>NZ_CP010523.2|WP_012542920.1|4718857_4719505_+|YtjB-family-periplasmic-protein
MVRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQVVLNLVPLMRSETPDEKRINQLLTQLTHNSRVLDAGVYDEQGDLVARSGESVEVRDRLALDGKKAGGYFNQQIVEPVPGKNGPLGYLRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTANKPVEDEDDEKKGNL
>NZ_CP010523.2|WP_040972809.1|4719504_4720521_+|lipoate--protein-ligase-LplA
MSTLRLLLSDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDHVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTVSTAIVLAALNSLGVTAEASGRNDLVVKTDSGDRKVSGSAYRETIDRGFHHGTLLLNADLSRLANYLNPDQKKLQAKGITSVRGRVANLVELLPGITHQHICEAIQEAFFNHYGERVDAEVISPDNTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFRWGGVELHFDVEKGHITRTQAFTDSLNPAPLEALAARLVGCQYRAEVLQQQCEALVGDFPEQEAELKELSAWIAGAVR
>NZ_CP010523.2|WP_004886539.1|4720610_4721330_-|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVREDVKLRDVVIGMGACTDSKVNRLRFKDHDFAAIADFGMVRNAVDAAKALGVDARVGNIFSADLFYTPDPSMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDQE
>NZ_CP010523.2|WP_016160264.1|4721432_4722656_-|phosphopentomutase
MKRAFIMVLDSFGIGATEDADRFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNAEVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDMEYGKAMF
>NZ_CP010523.2|WP_022065752.1|4722708_4724031_-|thymidine-phosphorylase
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMSMPERVSLTMAMRDSGTVLNWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSAALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAADDAEARAKLQAVLENGKAAEVFGRMVAAQKGPTDFVENYDHYLPTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDHVDGQRPLAVIHAKDENSWQEAAKAVKAAIKLDDKAPEITPTVYRRITE
>NZ_CP010523.2|WP_040972806.1|4724144_4724945_-|deoxyribose-phosphate-aldolase
MTPAEYEMTDLKASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTAAVCIYPRFIPIARKTLNEQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALIVGNEQVGFELVKACKEACAAANVLLKVIIETGELKEEALIRKASEISIKAGADFIKTSTGKVPVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRSAEDAQQFLAIADELFGADWADSRHYRFGASSLLASLLKALGHGDGKSASSY
>NZ_CP010523.2|WP_022065753.1|4725339_4726125_-|TatD-family-hydrolase
MSHRFIDTHCHFDFPPFAEDETASLARAAQAGVGQIIVPAISAARFNRVLALAAQHEALYAALGMHPIVIEQHADEGLAQLERCLSLRPPKLVAVGEIGLDLYRDDPQFDRQQALLEEQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVVHGFAGSLQQAERFVQLGYKIGVGGTITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQVARVFDALCELRAEPAPTIEAAVMANTKSLFSALAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010523_4	4.1\|4715039\|39\|NZ_CP010523\|CRISPRCasFinder	4715039-4715077	39	CP052361	Klebsiella pneumoniae strain D16KP0144 plasmid pD16KP0144-5, complete sequence	5211-5249	9	0.769
NZ_CP010523_4	4.1\|4715039\|39\|NZ_CP010523\|CRISPRCasFinder	4715039-4715077	39	CP052429	Klebsiella pneumoniae strain C16KP0129 plasmid pC16KP0129-2, complete sequence	1930-1968	9	0.769
NZ_CP010523_4	4.1\|4715039\|39\|NZ_CP010523\|CRISPRCasFinder	4715039-4715077	39	NZ_KU295136	Escherichia coli strain BK28610 plasmid pBK28610, complete sequence	14121-14159	9	0.769
NZ_CP010523_4	4.1\|4715039\|39\|NZ_CP010523\|CRISPRCasFinder	4715039-4715077	39	NZ_CP010366	Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-13.828kb, complete sequence	4109-4147	9	0.769

1. spacer 4.1|4715039|39|NZ_CP010523|CRISPRCasFinder matches to CP052361 (Klebsiella pneumoniae strain D16KP0144 plasmid pD16KP0144-5, complete sequence) position: , mismatch: 9, identity: 0.769

---ggtaaatgcaaaaaggcaacgcaagttgccttttttagg	CRISPR spacer
ccggctgaa---aaaaaggcaccgcaaggtgccttttttaca	Protospacer
   * *.**   ********* ****** *********** .

2. spacer 4.1|4715039|39|NZ_CP010523|CRISPRCasFinder matches to CP052429 (Klebsiella pneumoniae strain C16KP0129 plasmid pC16KP0129-2, complete sequence) position: , mismatch: 9, identity: 0.769

---ggtaaatgcaaaaaggcaacgcaagttgccttttttagg	CRISPR spacer
ccggctgaa---aaaaaggcaccgcaaggtgccttttttaca	Protospacer
   * *.**   ********* ****** *********** .

3. spacer 4.1|4715039|39|NZ_CP010523|CRISPRCasFinder matches to NZ_KU295136 (Escherichia coli strain BK28610 plasmid pBK28610, complete sequence) position: , mismatch: 9, identity: 0.769

--ggtaaatgcaaaaaggcaacgcaagttgccttttttagg	CRISPR spacer
cggctgaa--aaaaaaggcaccgcaaggtgccttttttaca	Protospacer
  * *.**   ********* ****** *********** .

4. spacer 4.1|4715039|39|NZ_CP010523|CRISPRCasFinder matches to NZ_CP010366 (Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-13.828kb, complete sequence) position: , mismatch: 9, identity: 0.769

--ggtaaatgcaaaaaggcaacgcaagttgccttttttagg	CRISPR spacer
cggctgaa--aaaaaaggcaccgcaaggtgccttttttaca	Protospacer
  * *.**   ********* ****** *********** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1199944 : 1244794

Salmonella_phage(86.05%)

integrase,portal,tRNA,plate,capsid,lysis,head,terminase,tail

attL 1198732:1198778|attR 1233437:1233483

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1198732:1198778	attL	NA	NA	NA	NA
WP_040968809.1\|1199944_1200964_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	5.6e-190	93.5
WP_004151019.1\|1200966_1201596_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_000102104.1\|1201718_1201958_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	8.8e-38	98.7
WP_040968808.1\|1201993_1202503_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	2.2e-78	86.4
WP_071891526.1\|1202510_1202711_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	1.3e-18	67.2
WP_004144796.1\|1202674_1203013_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_024623053.1\|1203080_1203314_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	3.5e-31	92.2
WP_023318930.1\|1203313_1203541_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	2.5e-34	90.7
WP_040968807.1\|1203537_1204389_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.4e-114	74.3
WP_040968806.1\|1204385_1206791_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.8
WP_004144689.1\|1206963_1207152_+	hypothetical protein	A0A1S6L006	Salmonella_phage	7.9e-26	98.4
WP_040968805.1\|1207166_1207400_+	DinI family protein	A0A1S6L014	Salmonella_phage	6.0e-31	84.4
WP_040968804.1\|1207475_1207733_+	hypothetical protein	J9Q7T5	Salmonella_phage	4.1e-17	47.7
WP_071891529.1\|1207996_1208701_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_040968803.1\|1208719_1209751_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	1.5e-174	87.7
WP_040968802.1\|1209750_1211514_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	92.6
WP_040968801.1\|1211654_1212488_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-99	74.4
WP_040968800.1\|1212504_1213569_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.9e-185	94.3
WP_040968799.1\|1213572_1214223_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.8e-102	86.1
WP_019704961.1\|1214319_1214784_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.1e-75	87.0
WP_004144701.1\|1214783_1214987_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.7e-29	88.1
WP_004144702.1\|1214990_1215206_+	hypothetical protein	E5G6N0	Salmonella_phage	1.0e-29	88.7
WP_040968798.1\|1215186_1215696_+	lysozyme	E5G6N1	Salmonella_phage	9.5e-82	84.0
WP_040968797.1\|1215700_1216084_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	4.3e-18	45.4
WP_040968796.1\|1216080_1216509_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	1.2e-48	77.2
WP_072145348.1\|1216483_1216642_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	2.0e-14	73.1
WP_040968795.1\|1216604_1217036_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.4e-63	81.1
WP_040968794.1\|1217028_1217475_+	phage virion morphogenesis protein	E5G6N4	Salmonella_phage	6.9e-52	75.7
WP_040226931.1\|1217519_1218809_-	hypothetical protein	NA	NA	NA	NA
WP_040226929.1\|1218894_1219467_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.5e-78	73.3
WP_040968793.1\|1219463_1219826_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	3.7e-48	83.9
WP_040968792.1\|1219812_1220721_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	3.2e-112	69.5
WP_040968791.1\|1220713_1221316_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.2e-59	61.0
WP_040968790.1\|1221319_1224205_+	hypothetical protein	A0A0S1S5D9	Klebsiella_phage	2.2e-239	51.7
WP_040968789.1\|1224212_1225049_+	hypothetical protein	A0A0S1S106	Klebsiella_phage	1.5e-103	66.2
WP_136071178.1\|1225064_1226135_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.7e-32	42.9
WP_040968786.1\|1226273_1227446_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	4.7e-209	93.1
WP_002896201.1\|1227455_1227971_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_004144716.1\|1228023_1228323_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.6e-33	80.0
WP_002896220.1\|1228337_1228457_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_162500023.1\|1228683_1231077_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	1.3e-107	37.3
WP_004185683.1\|1231073_1231559_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.1e-58	77.6
WP_040025413.1\|1231555_1232653_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.1e-174	84.7
WP_071891531.1\|1232719_1232938_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.1e-26	73.6
WP_040025415.1\|1232964_1233342_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1233945_1234428_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1233437:1233483	attR	NA	NA	NA	NA
WP_071549035.1\|1234538_1235015_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_004145682.1\|1235004_1235295_+	RnfH family protein	NA	NA	NA	NA
WP_008806098.1\|1235364_1235706_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_022066198.1\|1235853_1237515_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1237601_1238480_-	NAD(+) kinase	NA	NA	NA	NA
WP_008806096.1\|1238604_1239195_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_012540838.1\|1239315_1240602_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1240621_1241413_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1241576_1242941_+	signal recognition particle protein	NA	NA	NA	NA
WP_012540839.1\|1243179_1243428_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_008806093.1\|1243446_1243995_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_008806092.1\|1244026_1244794_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

1705514 : 1712471

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040975965.1\|1705514_1706378_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.9e-08	22.9
WP_040968730.1\|1706388_1707162_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-25	36.7
WP_162499946.1\|1707401_1708325_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.0e-12	27.7
WP_008804076.1\|1708567_1709929_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.0e-207	94.8
WP_004201558.1\|1710249_1710972_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_008804077.1\|1710968_1712471_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.6e-30	28.3

DBSCAN-SWA_3

2801143 : 2812022

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040968492.1\|2801143_2804251_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.4
WP_008804978.1\|2804305_2805571_+	MFS transporter	NA	NA	NA	NA
WP_012541789.1\|2805599_2806688_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	2.8e-208	98.6
WP_008804980.1\|2806774_2807035_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.0e-39	95.3
WP_039103359.1\|2807329_2808190_+	class A beta-lactamase LEN-17	A0A077SL40	Escherichia_phage	1.8e-144	90.9
WP_040968491.1\|2808207_2808969_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	6.1e-133	98.8
WP_008804983.1\|2809229_2810132_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-157	98.7
WP_016160981.1\|2810143_2811409_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-228	97.4
WP_012541792.1\|2811401_2812022_+	aldolase	A0A077SK32	Escherichia_phage	5.7e-113	98.1

DBSCAN-SWA_4

3135620 : 3174868

Salmonella_phage(33.33%)

integrase,lysis,terminase

attL 3129616:3129632|attR 3176321:3176337

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3129616:3129632	attL	NA	NA	NA	NA
WP_077254381.1\|3135620_3135962_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	2.6e-06	43.3
WP_004190640.1\|3138142_3138535_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_012967909.1\|3138531_3139083_-	hypothetical protein	G8C7Q1	Escherichia_phage	5.9e-29	39.9
WP_032410241.1\|3139084_3139468_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
WP_040975900.1\|3139454_3139688_-	hypothetical protein	A0A1V0E8A3	Vibrio_phage	1.3e-09	49.2
WP_040975898.1\|3139697_3139952_-	hypothetical protein	J9Q7U0	Salmonella_phage	3.6e-21	52.4
WP_040975896.1\|3139953_3140349_-	hypothetical protein	A0A1B1P9F2	Acinetobacter_phage	7.3e-13	38.8
WP_158280597.1\|3140389_3140662_-	Ig-like domain-containing protein	NA	NA	NA	NA
WP_040975894.1\|3140670_3141624_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	1.9e-131	73.7
WP_040975892.1\|3141634_3142420_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.3e-66	63.4
WP_040975890.1\|3142504_3143617_-	phage Mu F like family protein	I6PD76	Cronobacter_phage	2.8e-110	55.2
WP_040975888.1\|3143600_3145001_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	1.1e-127	53.7
WP_040975887.1\|3145000_3146308_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.1e-149	58.9
WP_040975885.1\|3146285_3147290_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.7e-35	43.5
WP_015958303.1\|3147384_3147879_+	hypothetical protein	NA	NA	NA	NA
WP_071891570.1\|3147846_3148164_-	hypothetical protein	I6S676	Salmonella_phage	5.3e-14	66.7
WP_040975882.1\|3148767_3149247_-	hypothetical protein	A0A192Y5Y1	Salmonella_phage	5.7e-12	46.1
WP_040975880.1\|3149593_3149887_-	hypothetical protein	G8C7W3	Escherichia_phage	1.4e-29	70.1
WP_071891575.1\|3149972_3150155_+	hypothetical protein	NA	NA	NA	NA
WP_162848989.1\|3150192_3150357_-	hypothetical protein	NA	NA	NA	NA
WP_071891615.1\|3150335_3150551_+	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	2.0e-12	54.3
WP_040975876.1\|3150581_3151049_-\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	8.2e-56	72.9
WP_040975874.1\|3151045_3151570_-	lysozyme	I6PBN2	Cronobacter_phage	7.1e-48	60.0
WP_052470379.1\|3151553_3151874_-	hypothetical protein	O64361	Escherichia_phage	3.1e-22	51.1
WP_071891578.1\|3152509_3153136_-	YagU family protein	NA	NA	NA	NA
WP_032732960.1\|3153387_3154203_-	antitermination protein	A0A286N2Q2	Klebsiella_phage	1.4e-106	74.1
WP_038421389.1\|3154199_3154496_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.3e-35	71.9
WP_040975872.1\|3154704_3155301_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.9e-89	79.6
WP_071891583.1\|3155336_3155570_-	hypothetical protein	A0A0M4R5D9	Salmonella_phage	1.3e-17	57.1
WP_032754145.1\|3156239_3156473_-	hypothetical protein	NA	NA	NA	NA
WP_052470378.1\|3157004_3157751_+	hypothetical protein	NA	NA	NA	NA
WP_040975869.1\|3157939_3158182_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	4.4e-29	86.7
WP_040975867.1\|3158174_3158378_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	2.0e-30	94.0
WP_040975865.1\|3158374_3158743_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.8e-10	43.6
WP_040975863.1\|3158750_3159500_-	ATP-binding protein	S4TNF5	Salmonella_phage	1.8e-116	81.1
WP_174545384.1\|3159502_3160390_-	hypothetical protein	Q8HA96	Salmonella_phage	1.4e-24	53.1
WP_040975861.1\|3160407_3161202_-	hypothetical protein	C7BGF1	Burkholderia_phage	3.7e-64	51.3
WP_040975860.1\|3161331_3161868_-	toxin YdaT domain-containing protein	K7PJT7	Enterobacteria_phage	2.3e-62	68.7
WP_071891584.1\|3161870_3162098_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	1.9e-21	64.9
WP_040975858.1\|3162167_3162581_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	9.5e-48	79.0
WP_077139161.1\|3162614_3163082_+	hypothetical protein	NA	NA	NA	NA
WP_040975856.1\|3163189_3163489_+	hypothetical protein	A0A1V0E5P0	Salmonella_phage	1.5e-13	55.9
WP_040217592.1\|3164041_3164233_+	YebW family protein	NA	NA	NA	NA
WP_040975854.1\|3164534_3167660_+	PD-(D/E)XK nuclease-like domain-containing protein	H6WRX1	Salmonella_phage	1.1e-289	56.1
WP_022631173.1\|3167672_3168782_+	recombinase RecT	H6WRX0	Salmonella_phage	1.0e-184	86.7
WP_022631172.1\|3168822_3169062_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	6.8e-22	67.5
WP_040975850.1\|3169282_3170500_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.3e-120	51.6
WP_008807805.1\|3170646_3171537_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_008807804.1\|3171536_3172529_+	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
WP_004140269.1\|3172530_3173340_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
WP_022065867.1\|3173368_3174868_-	histidine ammonia-lyase	A0A1V0S940	Catovirus	2.3e-59	33.6
3176321:3176337	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3372504 : 3427384

Klebsiella_phage(48.65%)

integrase,portal,tRNA,capsid,head,transposase,terminase,tail

attL 3377691:3377705|attR 3427560:3427574

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_136071160.1\|3372504_3373604_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.4e-48	42.8
WP_004892953.1\|3373827_3373980_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_023297392.1\|3374629_3375322_-	EAL domain-containing protein	NA	NA	NA	NA
WP_023297391.1\|3375678_3376737_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	8.0e-14	31.7
WP_023339907.1\|3377159_3378584_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	6.6e-96	48.4
3377691:3377705	attL	NA	NA	NA	NA
WP_040975758.1\|3378645_3387129_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	50.0
WP_023159867.1\|3387191_3387785_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	2.2e-77	75.6
WP_032429394.1\|3387836_3388184_-	hypothetical protein	NA	NA	NA	NA
WP_023317958.1\|3388216_3388927_-	C40 family peptidase	Q6UAW4	Klebsiella_phage	2.5e-136	90.3
WP_023339905.1\|3388928_3389684_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	3.6e-125	80.9
WP_014228916.1\|3389680_3390019_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	8.3e-58	89.3
WP_040975753.1\|3390018_3393354_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.2
WP_014228914.1\|3393586_3393952_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_014228913.1\|3394009_3394471_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_017898997.1\|3394502_3394904_-	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
WP_014228910.1\|3395269_3395608_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_040975750.1\|3395604_3395922_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	4.4e-45	88.8
WP_014907814.1\|3395902_3396163_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
WP_014228907.1\|3396221_3397508_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	4.4e-216	89.3
WP_040975743.1\|3397585_3398506_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	6.2e-148	87.6
WP_004148010.1\|3398542_3399802_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	6.2e-223	90.0
WP_032418045.1\|3399801_3399981_-	hypothetical protein	Q6UAX9	Klebsiella_phage	4.0e-11	57.6
WP_012542167.1\|3399974_3401696_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.1e-190	57.4
WP_012542168.1\|3401695_3402130_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_023289184.1\|3402378_3402810_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.1e-41	62.0
WP_023297386.1\|3402806_3403130_-	hypothetical protein	NA	NA	NA	NA
WP_032737090.1\|3403081_3403444_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	8.9e-58	83.3
WP_023297385.1\|3403427_3403592_-	hypothetical protein	NA	NA	NA	NA
WP_048330562.1\|3403673_3404150_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_048964999.1\|3404182_3404719_-	lysozyme	G9L6J6	Escherichia_phage	1.5e-85	82.6
WP_023297382.1\|3404696_3404966_-	hypothetical protein	K7P6H9	Enterobacteria_phage	1.9e-33	81.5
WP_064160814.1\|3405991_3406327_+	hypothetical protein	NA	NA	NA	NA
WP_129675911.1\|3407452_3407662_+	hypothetical protein	NA	NA	NA	NA
WP_023297381.1\|3407898_3408501_-	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-76	68.6
WP_040975739.1\|3408517_3409549_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.6e-96	49.6
WP_040975733.1\|3409748_3410141_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	6.1e-12	36.6
WP_071583399.1\|3410181_3410421_-	hypothetical protein	H6WRY6	Salmonella_phage	1.5e-16	58.6
WP_040975731.1\|3410483_3410717_-	DinI family protein	K7PM44	Enterobacteria_phage	1.1e-24	69.7
WP_048333319.1\|3411371_3412733_+	hypothetical protein	NA	NA	NA	NA
WP_040975727.1\|3413076_3414840_-	EAL domain-containing protein	NA	NA	NA	NA
WP_021462584.1\|3415152_3415593_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_174545385.1\|3415606_3416278_-	replication protein	A0A0U2JGJ0	Escherichia_phage	2.5e-61	69.5
WP_023297375.1\|3417098_3417653_-	hypothetical protein	NA	NA	NA	NA
WP_004147982.1\|3417655_3417877_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.2e-28	75.3
WP_025861419.1\|3418012_3418402_+	transcriptional regulator	H6WRX4	Salmonella_phage	5.5e-37	64.3
WP_016160636.1\|3419219_3419414_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3419456_3419801_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_016160634.1\|3419942_3422081_+	exonuclease	S4TNL0	Salmonella_phage	5.0e-100	43.0
WP_012542206.1\|3422133_3422379_+	excisionase	NA	NA	NA	NA
WP_023297374.1\|3422359_3423487_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21925	Phage_21	4.4e-119	58.4
WP_008806032.1\|3423604_3424855_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_023339894.1\|3425095_3425746_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_008806030.1\|3425762_3426221_+	NUDIX hydrolase	NA	NA	NA	NA
WP_012542211.1\|3426277_3427384_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
3427560:3427574	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3680335 : 3689783

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012968624.1\|3680335_3682057_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	4.5e-14	34.0
WP_008805841.1\|3682096_3682801_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3683152_3683371_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_012542332.1\|3683489_3685769_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.7e-165	42.0
WP_002896520.1\|3685799_3686117_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3686442_3686664_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_040974017.1\|3686730_3688671_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.9e-38	41.0
WP_008805838.1\|3688667_3689783_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010523

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection