CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP012547	Sulfuritalea hydrogenivorans sk43H strain DSM 22779	3 crisprs	csa3,DEDDh,WYL,cas2,cas1,cas9,cas6,cas3,DinG	0	11	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP012547_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012547_1

327853-327967

Orphan

Consensus_repeat	Method
TCCGGTGGGCGGCGGACATATCCCACCAGGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP012547_1

>merge|NZ_AP012547|1|327853-327967|CRISPRCasFinder
TCCGGTGGGCGGCGGACATATCCCACCAGGGGACGCCTGCCCGCGAAGCGGGAATCCCAGGCGCGCAAAGCACCGTCCGCCTTCCGGTGGGCGGCGGACATATCCCACCAGGGGA

>NZ_AP012547|1|1|327853-327967|CRISPRCasFinder
TCCGGTGGGCGGCGGACATATCCCACCAGGGGA	CGCCTGCCCGCGAAGCGGGAATCCCAGGCGCGCAAAGCACCGTCCGCCT
TCCGGTGGGCGGCGGACATATCCCACCAGGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012547.1\|WP_041096589.1\|335243_335855_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_AP012547.1\|WP_041096577.1\|328121_329375_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_AP012547.1\|WP_041096596.1\|337996_338881_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_AP012547.1\|WP_052473052.1\|325311_325740_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012547.1\|WP_041096581.1\|331911_332988_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_AP012547.1\|WP_148312821.1\|329420_331931_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	unknown	unknown	gnl\|CDD\|235325
NZ_AP012547.1\|WP_041096565.1\|321566_322112_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012547.1\|WP_041096573.1\|326612_327221_-\|bifunctional-phosphoserine-phosphatase/homoserine-phosphotransferase-ThrH	unknown	unknown	gnl\|CDD\|237437
NZ_AP012547.1\|WP_041096575.1\|327327_327732_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_AP012547.1\|WP_041096587.1\|334471_335125_-\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_AP012547.1\|WP_041096585.1\|333955_334369_+\|hemerythrin-family-protein	unknown	unknown	gnl\|CDD\|274154
NZ_AP012547.1\|WP_041096594.1\|337391_337979_-\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
NZ_AP012547.1\|WP_041096571.1\|325750_326611_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_AP012547.1\|WP_041096563.1\|320499_321372_+\|YicC-family-protein	unknown	unknown	gnl\|CDD\|236993
NZ_AP012547.1\|WP_041096583.1\|332984_333842_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_AP012547.1\|WP_041096561.1\|319438_320368_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_AP012547.1\|WP_052473050.1\|318536_319439_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_AP012547.1\|WP_041096591.1\|336140_337151_+\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_AP012547.1\|WP_052473049.1\|317808_318540_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_AP012547.1\|WP_041096569.1\|324787_325285_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587

Protein	Function_ID	Function_description	E-value
NZ_AP012547.1\|WP_041096589.1\|335243_335855_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.3844e-103
NZ_AP012547.1\|WP_041096577.1\|328121_329375_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NZ_AP012547.1\|WP_041096596.1\|337996_338881_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	3.53547e-162
NZ_AP012547.1\|WP_041096585.1\|333955_334369_+\|hemerythrin-family-protein	gnl\|CDD\|274154	TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.	3.60347e-21
NZ_AP012547.1\|WP_041096581.1\|331911_332988_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_AP012547.1\|WP_148312821.1\|329420_331931_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	gnl\|CDD\|235325	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB.	0
NZ_AP012547.1\|WP_041096573.1\|326612_327221_-\|bifunctional-phosphoserine-phosphatase/homoserine-phosphotransferase-ThrH	gnl\|CDD\|237437	PRK13582, thrH, bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH.	4.31678e-136
NZ_AP012547.1\|WP_041096575.1\|327327_327732_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.39355e-20
NZ_AP012547.1\|WP_041096587.1\|334471_335125_-\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.34088e-25
NZ_AP012547.1\|WP_041096594.1\|337391_337979_-\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	2.51255e-97
NZ_AP012547.1\|WP_041096571.1\|325750_326611_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	0
NZ_AP012547.1\|WP_041096563.1\|320499_321372_+\|YicC-family-protein	gnl\|CDD\|236993	PRK11820, PRK11820, YicC family protein.	1.37491e-119
NZ_AP012547.1\|WP_041096583.1\|332984_333842_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	3.73642e-124
NZ_AP012547.1\|WP_041096561.1\|319438_320368_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.84824e-65
NZ_AP012547.1\|WP_052473050.1\|318536_319439_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	4.78951e-44
NZ_AP012547.1\|WP_041096591.1\|336140_337151_+\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_AP012547.1\|WP_052473049.1\|317808_318540_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	7.69159e-166
NZ_AP012547.1\|WP_041096569.1\|324787_325285_+\|chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	1.54941e-63

>NZ_AP012547.1|WP_041096575.1|327327_327732_-|PaaI-family-thioesterase
MNTDTLQAALADYFAPWVQALALKVESFTAESVLLRLPQGDQLSRVGGMLCGQAMMAAADSAMVLALINHFGEFRPCTTVQFSSSFLKPLSAQDALIEAKVVRAGKALAFGEIDIRGARDGKSVCRASTTYALL
>NZ_AP012547.1|WP_041096573.1|326612_327221_-|bifunctional-phosphoserine-phosphatase/homoserine-phosphotransferase-ThrH
MQLVCLDLEGVLVPEIWIEFSKRTGIPELSRTTRDEPDYDKLMKYRLDLLKKHKLGLPDIQKVISDMGPMAGARDFLDALRRDFQVIILSDTFYEFAMPLMAQLNMPVLFCHKLEADAAGFLVNYHLRMPNQKKESVQRFKELRFKVIAAGDSYNDTAMLAEAHAGILFHPPQNVIDEFPQFPVTMNYTELRREIDKAAARI
>NZ_AP012547.1|WP_041096571.1|325750_326611_-|formyltetrahydrofolate-deformylase
MHGNRFYTLTASCPDQVGIIARVTGFIAEHKGWILESSFHADDLDGRYFMRIEVKADSLPFQLAEFRRRFQAVADELKMDWRINDSAVKKRVVVLVSKQEHCLYDLLARWQSRELDIEIACVISNHDSFKGFVEWHGIPFHHVPVTPDNKAAAYAEVQRLFEEVHGDTMVLARYMQILSPQLCAAYPGRILNIHHSFLPSFVGAKPYHQAYTRGVKLIGATCHYVTEALDQGPIIEQDVIRIDHSDSVDDMVRYGKDIEKTVLARGLRYHLEDRVLVHGNKTVVFR
>NZ_AP012547.1|WP_052473052.1|325311_325740_-|hypothetical-protein
MKVKALALMAALFAGQALAEDHRQLATLPPAAKEALREEMLGNLLAINEILTLMAAGKVKEAGQLAETTLGQSAQGKHRDKPFDARPGPHMPPAMHGIGNDGHVAASEFARAAIRGDREQALALLPKLTSACVACHYSYRTR
>NZ_AP012547.1|WP_041096569.1|324787_325285_+|chemotaxis-protein-CheW
MATENQAAANENPGLAQEYLTFTLGAEVYAIDILKVQEIRGYESPTTIANAPEFIKGVINLRGTIVPIVDMRIKFNVGMAEYTPVTVVIILIIGGRVVGIVVDSVSDVTMLRPDQIHPAPQFGAAVDTQYITGLSSLDDRMLIVIDIEKLMLSGEMALVAEACSA
>NZ_AP012547.1|WP_041096565.1|321566_322112_+|hypothetical-protein
MGTTVSRRVIFIKMKRKPAPPRPRSKPPIRHDDEMVGEEPRHSSSAFAPRSVALPASRWDIWWVAGYWVGGLCILAGIVAAVISFAAGYKPPIEAVQTSSSGLSSPGYSRSYGGSNGGASGGTGYVSRPPSTAEGFLSSPLKRKQGQITCSAQVGGSKEAILQFSKCLEQASETEPIPSGR
>NZ_AP012547.1|WP_041096563.1|320499_321372_+|YicC-family-protein
MIYSMTGYAAASRDLGSAVMNLEIKSVNSRYLDIGFRLSEDLRFLEMPLREKIVERIGRGKIECRGYLQAQPAQGAARQRTPNPALLGELGKLDDAVRSVLPQAAPLSVAEVLRWPGVLGDDSLTAEQLQASAQELFAKLLDEFVATREREGAKLADVLRDRAARMREQVRAAEPLLPAALEAYRERLSTKLREAVANLDEERIRQEVGVFAAKIDVAEEIARLVTHMDELERVLKKGGAVGKRLDFLMQELNREANTLASKSVSGEVTAIALELKLLIEQMREQVQNLE
>NZ_AP012547.1|WP_041096561.1|319438_320368_-|serine/threonine-protein-kinase
MVSQNNQPLPPGYELEGYRIERQLSVGGFSIVYLAHDAQGTPVAIKEYLPNALALRGEGQIAPTIPAEFQADFNHGLKCFFEEGRALTGLDHPNVVRVLNFFRANGTVYLVMRFEIGRTLRDYIRKNRGRLKESFLRSMFSGLLDGLGEVHGCGLLHLDIKPANIWLRDDGSPVLLDFGAARYAVDIGPPEPRAMYTPGYAAPEQYHGKFTLGPWTDIYAVGACIYAALAGAAPQAADERLVDDQLLPARQRWGMDYSPRLLATIDECLRLDPTRRPQHARALQASLNTDQAGDKRPDSWLSLLGLRRE
>NZ_AP012547.1|WP_052473050.1|318536_319439_-|serine/threonine-protein-phosphatase
MNYTIAQESRIGGRSINQDRATWLATEDAVLMVVADGMGGHLQGEVAAQIAVDTLTERFRSEAKTRLADPAQFLATTLQQAHDTIVRYSADCRILPHAAPRTTCIACVVQDGQAFWAHAGDSRLYLIHSHAEGPGRVAQTRDHSIVQRMVDQGAISDAEAAIHPLRNRVFSCLGGDVPPHIDVSPAVKLQDGDLIALCTDGAWSPLGETLVAELGRASPRTTVPRLLDAAERAAGPGADNLTLITMRWGVSDADVGTHTLERRPADRRTAAETPISDEDIESAIAAIRRRIPLTPNGASS
>NZ_AP012547.1|WP_052473049.1|317808_318540_-|ribonuclease-PH
MSNTFQRTDRAASQLRNLRITRNYTCHAEGSVLVEFGATKVLCTASVEESVPGFLRGKGSGWVTAEYGMLPRATNTRMAREAAKGKQSGRTQEIQRLIGRSLRAVTDMAALGERQITLDCDVLQADGGTRCASITGACVALHDALSTLVTGGKLASHPMRELVGAVSVGIVGGQPVLDLDYAEDSACDTDMNVVMTASGGIIEVQGTAEGAPFSRAELDTLLELAAAGIGDIVKAQQSALVTR
>NZ_AP012547.1|WP_041096577.1|328121_329375_+|glutamyl-tRNA-reductase
MQLFALGINHHTAPLAVREQVAFDPLRMGQALHDLLRAKTVREAAILSTCNRTELYCAAEQPQAAADWLAEYHSLSPQKIQPYLYQHPQQDAVRHMFRVAAGLDSMVLGEPQILGQMKQAARAAEEAGTLGTLLGKLFQRTFAVAKEVRSTTAIGANTVSMAAAAVHLSARIFDSIAAQQVLFIGAGEMIELCAAHFAAQKPKRITIANRTLERGADLAARFGGDAMRLDQLGERLADYDIVVSCTASSLPIIGLGMVERALKARRHRPMVMVDLAVPRDIEAEVTRLDDVFLYTLDDLGQIVESGLESRQAAVVEAEAIITDRVSGFLHWLESRETVPTIRALRDTAERARRHEVEHALKLLARGDDPAKVLDALSHGLTNKLLHAPTHALNQAEGRERAEVAELISRIYRLNSGE
>NZ_AP012547.1|WP_148312821.1|329420_331931_+|glycerol-3-phosphate-1-O-acyltransferase-PlsB
MSKLSMFDFMGLALALMRRVLYLGTRTQVFPDNPEELELKPDIPVCYVLDERHLSNLLVVDHECGQIGLPRAMHPMRDEAFSSQRSFFFLSHNERGRLVPNPRVSAAPMLKAMVRAAFADPRFDVQLVPVTVLWGREPGKQDSVLKALLAESWQQVSTLRHLLAMLIHGRHTMVRFNAPISLREFLSDGIDEPHAVRKLGRILRVHFRRQREMAIGPDLSHRHTQLQTLLNMPSVHKAIVAEAEAKSISLVAAKRSAREFAIEIASDYSYAVVKAFALFLTWVWNKVYNGIEVHNFERVTAVAPGHGIVYVPCHRSHADYLLLSYIIFTRGMMVPHIAAGSNLNLPLVGSILRRSGAFFLRRKIKGEPLYAAVFQEYVHLMIDRGFPMEYFIEGGRSRSGRTLAPKAGILAMTVQSFVRSHARPLVFVPVYIGYEKLMEGSSYIAELHGRPKKSESLVGLVRAARVLKRNFGRVHVNFGPPLALAEFLDAHHPDWRDDSLDAQAPWLRGAVDATATELARRINSLAVVTPVNLLAVTLLSTPKHAADFRLLQKQIGHVQYLLAESPYHASIITCDQPAAEVIDYVRTLELVECHPHPLGDIVRAEEGQAALLAYFRNNVLHLLALPALLACLVSHNQILTRQRAKQAIKGIYGLLRAELFLPWDAAELDVAIDQAEAALTRRGLIVADCQSELLRAPPPNSEANPELRQLGNIIRPTLERQFLTLALLQHHGSGRLTRAGLEEATHLLAQRLAMLHEFNVAEFPEKLLFANVIRNLIDAEILQTDASGLLQFDERITRAAEQTELLLAADVRHSIQLIARAAAPVPESLSHEEKHS
>NZ_AP012547.1|WP_041096581.1|331911_332988_+|peptide-chain-release-factor-1
MKKSILEKLQRLSERLEEIDGLLGGEHVARDMDNYRKLTRERADITPVVELFHAYRGASADFSGAAEMLSDPEMKELALAEQASASAEMARLEVELQRALLPKDPNDERNLFLEIRAGTGGDESALFAADLFRMYSRYAERQRWKVEIVSRSESDLGGFREIIARIEGNGAYSKLKFESGGHRVQRVPVTETQGRIHTSACTVAVMPEADELVDIDINPADLRIDTFRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHRNKAQAMSVLAARINDAKQREQQQKIASERKSLIGSGDRSERIRTYNFPQGRITDHRINLTLYKIDSIMDGDLDELVGALTAEHQAELLAALSE
>NZ_AP012547.1|WP_041096583.1|332984_333842_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTTVAAALAAARAKLPASEARLLLGHVLGKPAAWLITHDADVLDEDVLLGFASLVARRAGGEPVAYLAGFREFFGREFEVSPAVLIPRPETELLVDVVLKSGVGACRPAKRNSRQTESATVTMLDLGTGSGCIAITLALECPQARVVAVDASAAALALARRNAERLGAQLRLLQSDWFAALAGERFDLIVANPPYIAAGDPHLAAGDLRHEPSTALSSGADGLDDIRRIIAATPAHLAPGGQLWLEHGYDQAEAVRELLKAADLAGIEQHRDLAGIVRVSGGRLR
>NZ_AP012547.1|WP_041096585.1|333955_334369_+|hemerythrin-family-protein
MKWDSSFAIGIEEIDNQHRKIFEHLLALENSVEKRDPWHILHFFLTELAGYMKFHLAVEDALLEIIRYPDRANHRDSHSRLIEQLARLEDQLKGRATGDNLVGFFEDWFIRHVLASDREYAAYVASEFPALAGKRAA
>NZ_AP012547.1|WP_041096587.1|334471_335125_-|cytochrome-c4
MKRSLLSCLLTLLCAMAASGAQAADAPKATPKGDAARGQAVASTVCVACHGPDGNSPLAANPKLAGQHTEYLFKQMKNFKAADGKQPERVNAIMNGMIAAYDDGQMRDLAAYFATQTQKGEAARNRETIELGQKLYRGGDQAKGLPACAACHGPAGAGIPAQYPRIGGQFAEYTEAQLKGFREGSRANDPNKMMRMVAIKMTDAEIKAVSDYIAGLR
>NZ_AP012547.1|WP_041096589.1|335243_335855_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MSLFRHASFEISVAQPSGLPLPEGAEIAFAGRSNSGKSSAINTLVGHTRLAFVSKTPGRTQLINVFRMRNGAALVDLPGYGYAQVPLAVRLQWQGLLEHYLTCRSNLVGLVLIMDSRRPLTELDWKMIGWFGPTGRPIHCLLTKSDKLTRQEQAKTLRETRAALADFGEQVTVQMFSSLKKTGMEEAEQVIGGWLNGAPSPTI
>NZ_AP012547.1|WP_041096591.1|336140_337151_+|porphobilinogen-synthase
MITKGVFPKSRMRRMRRDDFSRRLMREHTLTADDLIYPVFVLEGSGRTEAVASMPGVERMSLDRLLPVAEKALKLGVPALALFPVVDSGRKTQGAEEAWNPAGLVPTVVARLKQEFPELGVITDVALDPYTSHGQDGLIDPADPRGYVMNDETLEALAKQALCHARAGADVVAPSDMMDGRIGRIRATLDAEKLIHTRILAYSAKYASAFYGPFRDAVGSAGNLGKGNKYTYQMDPANTDEALREVALDIDEGADMVMVKPGMPYLDIVRRVKDEFGVPTYAYQVSGEYAMLKAAAQNGWLAHDAVMMEALLSFKRAGCDGILTYFALEAATLLKS
>NZ_AP012547.1|WP_041096594.1|337391_337979_-|nucleoid-occlusion-factor-SlmA
MNEARAAKVGEKKLLILQTIAEMLERPAVEKVTTALLAKQLQVSEAALYRHFASKAQMYEGLIEFIESGVFSVITQIEAAEESGLKQAEAIVASLLRFAQKNRGLTRVLVGDALVHENPRLQARINQLLDRIESTLKQCLKVASAQGALAAEHDFSAHADLLVCYTVGRWQRFVKSGFKDDPLANWPAQWPILAR
>NZ_AP012547.1|WP_041096596.1|337996_338881_-|acetylglutamate-kinase
MTEKLSPAAKAGVLAEALPYIKRFHGKTIVVKYGGNAMTDEHLKQCFARDVVLLKLVGMNPVVVHGGGPQIENLLARVGKKGEFVQGMRVTDAETMDLVEMVLGGQVNKEIVNLINQHGGKAVGLTGKDGNFIRAKKLMMENKDAPGDLIDIGQVGDIVSIDPSLIALLDTGAFIPVIAPIGVGSEGETYNINADVVAGKIAEVLKAEKLVLLTNTPGVLDQSGKLITGITPKQIDDMVADGTLSGGMLPKISSALDAARSGVKGVHIIDGRVEHALLLEIMTDEGVGTLIKSK

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Crispr_ID: NZ_AP012547_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012547_2

1352230-1353205

TypeII

Consensus_repeat	Method
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CRISPRCasFinder
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CRT
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	PILER-CR

14 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_AP012547_2

>merge|NZ_AP012547|2|1352230-1353205|CRISPRCasFinder,CRT,PILER-CR
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTCGCCATCAACAACGTCCTCGCGCTCGTGCAGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTTGCTCGTATCGCGCCCCGGTGGCGTGGTCCGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTTAACGCGCAGTGCGGCCAAGGCAACGCGGGGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTGCAAATCGACAAGCAATTGCGTTCATCTCTGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTCGCCGAGCTTGAAGAAGTCGCGCCGAACGTGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTCAAACCAGAGAGAAGCAAACTGGAAGAACGGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTACGCTGTAGATAGCATCCTCTCCGAGTTCTTGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTGCGAATCCTTGGATACCTGCTGCATCGTGGGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTGCGTTGCGAATAATTGTGCGGCAGACAAAGGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTCTTTGTTATCGGGCTTATCGCGTTCGTCTAGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTATGCTTGCACTCTGCCCCCGAAATAAAACGGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTCGAATTCCTCCATGGTCGCGTTCAGCGACGGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTACCCTCGTAAGCCGCCCCGCTGGCCACCTCGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATTAGTTGAAGACATCCAGCGGATACTCGCAGGGTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT

>NZ_AP012547|2|2|1352230-1353205|CRISPRCasFinder
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CGCCATCAACAACGTCCTCGCGCTCGTGCA
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	TGCTCGTATCGCGCCCCGGTGGCGTGGTCC
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	TAACGCGCAGTGCGGCCAAGGCAACGCGGG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	GCAAATCGACAAGCAATTGCGTTCATCTCT
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CGCCGAGCTTGAAGAAGTCGCGCCGAACGT
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CAAACCAGAGAGAAGCAAACTGGAAGAACG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	ACGCTGTAGATAGCATCCTCTCCGAGTTCTT
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	GCGAATCCTTGGATACCTGCTGCATCGTGG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	GCGTTGCGAATAATTGTGCGGCAGACAAAG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CTTTGTTATCGGGCTTATCGCGTTCGTCTA
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	ATGCTTGCACTCTGCCCCCGAAATAAAACG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CGAATTCCTCCATGGTCGCGTTCAGCGACG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	ACCCTCGTAAGCCGCCCCGCTGGCCACCTC
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	AGTTGAAGACATCCAGCGGATACTCGCAGG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT

>NZ_AP012547|2|1|1352230-1353205|CRT
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CGCCATCAACAACGTCCTCGCGCTCGTGCA
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	TGCTCGTATCGCGCCCCGGTGGCGTGGTCC
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	TAACGCGCAGTGCGGCCAAGGCAACGCGGG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	GCAAATCGACAAGCAATTGCGTTCATCTCT
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CGCCGAGCTTGAAGAAGTCGCGCCGAACGT
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CAAACCAGAGAGAAGCAAACTGGAAGAACG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	ACGCTGTAGATAGCATCCTCTCCGAGTTCTT
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	GCGAATCCTTGGATACCTGCTGCATCGTGG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	GCGTTGCGAATAATTGTGCGGCAGACAAAG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CTTTGTTATCGGGCTTATCGCGTTCGTCTA
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	ATGCTTGCACTCTGCCCCCGAAATAAAACG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CGAATTCCTCCATGGTCGCGTTCAGCGACG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	ACCCTCGTAAGCCGCCCCGCTGGCCACCTC
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	AGTTGAAGACATCCAGCGGATACTCGCAGG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT

>NZ_AP012547|2|1|1352565-1353205|PILER-CR
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CAAACCAGAGAGAAGCAAACTGGAAGAACG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	ACGCTGTAGATAGCATCCTCTCCGAGTTCTT
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	GCGAATCCTTGGATACCTGCTGCATCGTGG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	GCGTTGCGAATAATTGTGCGGCAGACAAAG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CTTTGTTATCGGGCTTATCGCGTTCGTCTA
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	ATGCTTGCACTCTGCCCCCGAAATAAAACG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	CGAATTCCTCCATGGTCGCGTTCAGCGACG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	ACCCTCGTAAGCCGCCCCGCTGGCCACCTC
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT	AGTTGAAGACATCCAGCGGATACTCGCAGG
GTTGTAGCTCCCTCTCTCACCCCGGATAGCTACAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012547.1\|WP_041098033.1\|1351819_1352017_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012547.1\|WP_041098019.1\|1342550_1343042_+\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_AP012547.1\|WP_052473358.1\|1347149_1347731_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_AP012547.1\|WP_041098031.1\|1350421_1351792_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_AP012547.1\|WP_052473823.1\|1353602_1354487_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_AP012547.1\|WP_084207285.1\|1362013_1362610_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237621
NZ_AP012547.1\|WP_041098041.1\|1358138_1358417_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|374105
NZ_AP012547.1\|WP_041098047.1\|1359993_1361931_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_AP012547.1\|WP_041098029.1\|1349034_1350102_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_AP012547.1\|WP_041098025.1\|1345876_1346623_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_AP012547.1\|WP_041098051.1\|1362738_1364361_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_AP012547.1\|WP_041098043.1\|1358419_1358647_-\|ParD-like-family-protein	unknown	unknown	gnl\|CDD\|314732
NZ_AP012547.1\|WP_041098022.1\|1344698_1345880_+\|O-succinylhomoserine-sulfhydrylase	unknown	unknown	gnl\|CDD\|181244
NZ_AP012547.1\|WP_041098035.1\|1353268_1353577_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_AP012547.1\|WP_041098027.1\|1346640_1347129_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_AP012547.1\|WP_084207284.1\|1347790_1349035_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225577
NZ_AP012547.1\|WP_041098045.1\|1358751_1359882_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_AP012547.1\|WP_041098039.1\|1354491_1357932_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_AP012547.1\|WP_148312869.1\|1364387_1367297_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_AP012547.1\|WP_041098020.1\|1343160_1344702_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427

Protein	Function_ID	Function_description	E-value
NZ_AP012547.1\|WP_052473358.1\|1347149_1347731_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	5.67114e-79
NZ_AP012547.1\|WP_041098019.1\|1342550_1343042_+\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	7.40232e-27
NZ_AP012547.1\|WP_041098031.1\|1350421_1351792_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_AP012547.1\|WP_052473823.1\|1353602_1354487_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	4.19128e-97
NZ_AP012547.1\|WP_084207285.1\|1362013_1362610_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237621	PRK14139, PRK14139, heat shock protein GrpE; Provisional.	2.18336e-78
NZ_AP012547.1\|WP_041098041.1\|1358138_1358417_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|374105	pfam15781, ParE-like_toxin, ParE-like toxin of type II bacterial toxin-antitoxin system.	1.98799e-45
NZ_AP012547.1\|WP_041098047.1\|1359993_1361931_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_AP012547.1\|WP_041098029.1\|1349034_1350102_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.67277e-14
NZ_AP012547.1\|WP_041098025.1\|1345876_1346623_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.90978e-108
NZ_AP012547.1\|WP_041098051.1\|1362738_1364361_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	5.10615e-62
NZ_AP012547.1\|WP_041098043.1\|1358419_1358647_-\|ParD-like-family-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	3.95406e-23
NZ_AP012547.1\|WP_041098022.1\|1344698_1345880_+\|O-succinylhomoserine-sulfhydrylase	gnl\|CDD\|181244	PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.	0
NZ_AP012547.1\|WP_041098035.1\|1353268_1353577_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.26677e-42
NZ_AP012547.1\|WP_041098027.1\|1346640_1347129_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	8.5465e-83
NZ_AP012547.1\|WP_084207284.1\|1347790_1349035_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	6.12044e-29
NZ_AP012547.1\|WP_041098045.1\|1358751_1359882_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_AP012547.1\|WP_041098039.1\|1354491_1357932_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_AP012547.1\|WP_148312869.1\|1364387_1367297_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.44506e-113
NZ_AP012547.1\|WP_041098020.1\|1343160_1344702_+\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0

>NZ_AP012547.1|WP_041098033.1|1351819_1352017_-|hypothetical-protein
MTIDTVQPTLSVQAVHPRQDAKEQSGRESRRNGKSGQPEEERQDQEQTFLNVMGQVTGKTINITA
>NZ_AP012547.1|WP_041098031.1|1350421_1351792_+|cysteine--tRNA-ligase
MLKIYNTLAREKQVFVPIEPGRVNMYVCGMTVYDFCHLGHARVLVVFDMVARWLRASGYEVKYVRNITDIDDKIIRRAQENGETIRQLTDRFIAAMNEDAGALGVLRPDAEPRATEFVAQMLDMIGTLEKQGYAYVAGSNDVCYSVRKFDGYGKLSGKSLEDLRAGERVDVMAGKHDPLDFVLWKHARDDEPAEVKWPSPWGPGRPGWHIECSAMGSELLGRHFDIHGGGQDLQFPHHENEIAQSEGAHQCQYVNYWMHNGFVRVDDEKMSKSLGNFFTIREVLKQYDAEVVRFFILRAHYRSPLNYSDVHLDDARHALTRLYTALKSFAGEAAVDWSEAHAVRFKAALDDDFGTPEAMAVLFDLASAVNRGEAALAGQLKALGGVLGLLQRDPQGFLQAAPEGGLSNAEIEAKVGARATAKKAKNFAESDRIRDELKAAGIVLEDGPQGTTWRRA
>NZ_AP012547.1|WP_041098029.1|1349034_1350102_-|tetratricopeptide-repeat-protein
MTQIRLNAARLLASAMSIALLALAPAAHADALQDISKLVKQGQHAQALEQVDKYLAGKPKDAQGRFLKGIVLTEMNKPNEAIAIFSKLTEDFPELPEPYNNLAVIYAQQKQYDKAKQALEMAIRTHPSYATAHENLGDIYARLASQAYDKALQIDSSNSSAQNKLALIRDLMSTANRPGKVTKPVAEVRPPEPVKIAEAPKPAAPGTAAPATAAPATPAAVPVASPAKPVEAPKPAVAKAAGDANAEITKAIDLWAAAWSRKDVKAYLAAYARDFKTPSGESRSAWDAERQKRIAKPGAIQVSYENLRIAVDGETATVKFRQHYKSASLKTSSNKVLLMGKRDGKWQILQERVGS
>NZ_AP012547.1|WP_084207284.1|1347790_1349035_-|L,D-transpeptidase-family-protein
MAGLSRSLAIATACGLLLAAGTVGAAGKAPKHLKKDAGGPAVEAIYTDSGPEPLLAKVFDAIEANRLDVAMQQTEMLIKAYPNFRLAHLVKGDLLLARSRPLMSFGEGGGPAAGEKIADLRDEAIVRLKGYRTKPPADYVPRYLLQMHPEQKHAVVVDTQKSRLYLYQNDNGTPRFIADYYISQGKLGAEKAREGDKKTPIGVYHVTSSLPRQKLTDFYGSGAFPINYPNDWDKRQGRNGHGIWLHGTPSDTFSRPPKASDGCVVLANQDLDSLSKSLQVGLTPVIISNSIEWLSLDDWQNERSSLLKVIEEWRQDWESRDVGHYARHYSHKFNADGQTYQGWVEQKRKVNAGKSWIKVGTGNISMFRNPGKEEHVVVTFEQDYRSSNLSNQMKKRQYWIKEGGHWKIVFEGAA
>NZ_AP012547.1|WP_052473358.1|1347149_1347731_-|peptidyl-prolyl-cis-trans-isomerase
MHRLFLFVFALLFGIAAHAANPMLEVKTSQGTLTIELYQDKAPKTVENFLQYAKDGFFNGTIFHRVIPGFMIQGGGFTPDMKQKETRANIQNEAKNGLKNETGTLAMARTMDPHSASAQFFINLKDNSFLDYPGRDGWGYAVFGKVVQGFDVVQKIATVQTTNAGPHQNVPATPILIESVKLLPAPVPAPAKK
>NZ_AP012547.1|WP_041098027.1|1346640_1347129_-|peptidyl-prolyl-cis-trans-isomerase
MIKLTTSLGAITLELDAEKAPKSAANFLAYVESGHYDNTIFHRVIDGFMIQGGGFEPGMDQKPVRDPIENEARNGLRNERYTVAMARTSDPHSATAQFFINVGDNDFLDNDKCQDGWGYCVFGRVVEGQDVVDKIKSVKTGNKGFHQNVPAEDVVIERAEVV
>NZ_AP012547.1|WP_041098025.1|1345876_1346623_-|UDP-2,3-diacylglucosamine-diphosphatase
MLTIAGTARFISDLHLRAERPDLTARFAAFLADTAAAKIEALFILGDLFEYWIGDDDLADPFNAQVCKLLRDLADRGTRIYFIAGNRDFLIGGTFAAAAGMRLLSDVETVGAGGTATLLMHGDTVCTDDIPYQEFRRMVRSPDWQRTFLARPLAERRAEVENLRRRSAEAMQGKTAAIMDANNASIREALTAHGCTRLIHGHTHRPGHEVIQLASGNAERWVLSDWDTGRGDALEIDAAGIRRIDLSA
>NZ_AP012547.1|WP_041098022.1|1344698_1345880_+|O-succinylhomoserine-sulfhydrylase
MSVPDNPGWSFDTLAVRAGQERSQFNEHSEALYLTSSFVFENAAQAAARFSGEEPGNVYARFTNPTVTTMQERLAALEGAEACVATATGMAAILSTVMALMKSGEHIVASRSIFGATQQLFGTILPRFGVETAFVDQGSVEAFRAALRPTTKLVFIETPSNPLTEVFDIAALAEVAHTAGALLVVDNCFCTPALQRPLELGADLVIHSATKYLDGQGRVLGGAVCGSKPLTDEVFKFLRTAGPTLSPFNAWVILKGLETLSVRMKAQSANALELAQWLEAQPQVARVHYPGLASHPQHVLAMRQQASGGAIVSFEVKGGREAAWRVVDNCRLLSITANLGDTKTTITHPASTTHGRITAEARAASGIGEGLLRIAVGLESPADLKADLARGLV
>NZ_AP012547.1|WP_041098020.1|1343160_1344702_+|amidophosphoribosyltransferase
MCGILGVVATTPVNQLLYDGLQVLQHRGQDAAGIATAEGGRFHMHKGSGLVRDVFRTRNMRSLMGNWGIGHCRYPTAGSADNAAEAQPFYVNSPFGLMLAHNGNLTNADQLKQDMFLQDLRHMNTNSDSEVLLNVLAHELQAASTKYQVDAETIFKAVAGVHRRVKGAYAVVAMIAGYGLLAFRDPYGIRPLVMGRNETSEGMEYMVASESVAIDTLGFKMLRDVEPGEAVLIDMRGNFVSRQCAERTLHAPCMFEYVYLARPDSVMDGISVYETRAKMGDFLADKIRLTMPNLAIDAVIPIPDSSRHSAMELAARLKLPYREGFVKNRYIGRTFIMPGQATRRKSVRQKLNAISQEFKGRNVLLVDDSIVRGTTSREIIMMAREAGAKKVYFASASPPVRFANVYGIDMPTRSELIAAFRNDEEICREIGADALIYQDLDDLKAAVRAINPAVTQFETSCFDGSYITGDVTATYLQNMEHKRSQPPLPASDDQDGFDGPDGEQLDLNLVQAG
>NZ_AP012547.1|WP_041098019.1|1342550_1343042_+|CvpA-family-protein
MTAFDYAVLTVIAASVLLGLWRGVVSEILALAAWVVAFLVARAQGSQVADWLTGQIAEPGMRLAAAYVLIFVGVLLVFAIARMIISLMLKAVGLGLLDRLLGAAFGVLRGVLVVWVAVLVAGMTPLPKTDWWRDAMLAPPLETAVIAAKPWLPAEAAKRIRFR
>NZ_AP012547.1|WP_041098035.1|1353268_1353577_-|CRISPR-associated-endonuclease-Cas2
MRLLVFFDLPMVTKAEKRAYVQFRRFLLNDGYDMIQWSVYGRILNGRDAETKHLARLVESLPPEGSIRCMTVTEKQYAGMRLLVGLPLFQEKKVAASQMLLF
>NZ_AP012547.1|WP_052473823.1|1353602_1354487_-|type-II-CRISPR-associated-endonuclease-Cas1
MISSPAKLRREHFSLAIEQEQTAFVPFEDIAVIVLNHREITLTHPVLSACAEYGIGLYATGSNHQPAGVFLPFLSHSRTTRMMRLQLKIAKPTAKQTWAGIVRRKIENQAACLKLGGKKGTDRLASYARRVRSGDPDNMEAQAAAFYFAQLFGQDFHRAEERWTNAALDYGYAVLRGAIARGLVAHGLHPTVGLFHDSEQNAFNLADDLIEPFRPLVDLHVTKHAAMTEGDLIPADKQALVALLNIDVAMPQGRMSVLSAIEYVVESLVRAYEGDTKDLDLPGLIGLQPHRLEH
>NZ_AP012547.1|WP_041098039.1|1354491_1357932_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MSGNTHGPLTFGFDIGIASVGWCVLGENRIVNLGVRCFDKAETAKEGESLNLARRTARLMRRRLRRRAWRLTKLARLLKREGLIAEASRIHIPSPVSPWRLRVEGIDRRLTDDEWARVIYHLCKHRGFHWISRAEERKAESDAKEGGRVKKGLSDTQRRMTEKGYRSAAEMVLAEFPDAQRNKQGDYGKALSRILLSDELALLFRRQRELGNPNAGNELEATILGNGNRKSGLFWEQKPPLAGADLLKMLGRCTFEKNEYRAPKASFTAERHVWLTRLNNLRVVVDGTTRSLDDAEHRLVLPLPYKQAGDFTYKQLRTALTKAGLLPEGFKFAGLSYPTGRQLDDPKAKDPESEKLVRLPAWQELRKTLKDKNLETEWEGMAGAATGGNPELLDEIARVLSVFKDGDEVTAELWKLPLPGGKAMIDALSEISFDKFHALSLKALRKIVPHMESGLRYDEACAVAGYHHSQLHAAGAGEHKFLPPFYSRRDKDGRMVFNEELDVPRNPVVLRALNQARKVLNALVRTYGSPTAVHIEMARDLSRPLDERNKVKKAQDEYRERNEKDKAAFAAEYGIAPKSREFEKFQLYREQQGKCAYSLKSLDLHRVLHDIGYAEVDHALPYSRSYDDSKNNKVLALTEENRNKGNRTAYEYLTSFPGGENGERWRNFSVAVETNKAYRLAKRTRLLRKDFSGRAAEEFRERNLNDTRYICRFFKNTVERFLKLDAKVGAGDTAEISAKRCVVLSGQTTAFLRARWGLLKVRGNSDRHHALDAAVVAACSHGMVKRLGDYSRTKELAKVHDGFPDPETGEIIDPVMFQQLHAHFPDPWPHFRAELEARLNVDDTADLRARMELFGTYAPEALETLRPLFVSRAPQRRNSGAAHKDTIYAQPERLKEQGGVTQKVPLTSLTLKDLDKLIDPHRNEKLYAAIRARLEAHGGKADKAFPAGNPLRKPDREGNPTGPVVRTVTMVIDKLSGIPVRGGIAKNDTMLRVDIFRHKKDGKFHLVPVYVYHAVAKEFPNRAIVQAKDEDEWTLIDDKFDFCFSAHPNDLLKITQKSGETIFGYYRGCHSGTAAINIALHDRYAYAEKTTSLAFSKKNPGKPIPNDKLGLIEGIGVKMAANMEKFHVDTLGNIYPAPPEQRRGLA
>NZ_AP012547.1|WP_041098041.1|1358138_1358417_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAAVQVLQAAAFRRAYKRLHPNQKADVDDAVQAIVADPTLGEAKKGDLAGVFVYKFKCAGQLALLAYEYDPATRLLLLLGSHENFYRDLKRS
>NZ_AP012547.1|WP_041098043.1|1358419_1358647_-|ParD-like-family-protein
MSMPVRIDDTLYDQARAQAQAERRTIAGQIEFWAMVGKAALDNPDLPTDFVRELLIARAEGPTLATPFVAEGKRD
>NZ_AP012547.1|WP_041098045.1|1358751_1359882_-|molecular-chaperone-DnaJ
MAKRDFYEILGINRDASDDEIKKAYRKLAMKHHPDRNPDNPKAEEHFKEAKEAYEILSDAQKRAAYDQYGHAGVDPQAGMGQGGAGMGGFADAFSDIFGDIFGGGGQRGGGRSNVYRGADLRYNLEVSLEEAARGTETRIRIPTMAECETCSGSGAKKGSEPKTCPTCGGHGQVRMQQGFFSIQQTCPKCHGTGRYIPDPCGTCHGSGRVKQHKTLSVKIPVGIDEGDRIRLTGEGEPGVNGGPPGDLYVQIHLKAHAVFQRDHDDLHCEMPVSFATAALGGEIEIPTLDGVAKLKVPAETQTGKVFRLRGKGIKGVRSISHGDLLCHVVLETPVSLTDRQKELLQEFEEISQGNAQRHNPRAQSWLDRVKEFFSS
>NZ_AP012547.1|WP_041098047.1|1359993_1361931_-|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAIMEGGKPKVIENAEGARTTPSIVAYADDGEILCGAAAKRQAVTNAKNTLFAVKRLIGRRFEEKEVQKDIDLMPFRIVKADNGDAWVEARGNKMAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAFGMDKQEGDRKIAVYDLGGGTFDISIIEIAEIEGEHQFEVLSTNGDTFLGGEDFDQRLIDYVVTEFKKEQGVDLKNDVLALQRLKEAAEKAKIELSSAQQTEFNLPYITADASGPKHLAMKLTRAKYESLVEDLIARTIEPCRIAIKDAGVKTSDITDVILVGGMTRMPKVQDKVKEFFGKEPRRDVNPDEAVAVGASIQGGVLQGEVKDVLLLDVCPLSLGIETLGGVMTKLIAKNTTIPTKTSQTFSTADDNQNAVTIHVMQGEREMASGNKSLGQFNLSDIPPAPRGMPQIEVTFDIDANGILHVSARDKGTGKENKITIKANSGLSEAEIQAMVQDAAAHAEDDRKAHELVDARNQCDAMVHSIKKALGEHGDKMEADEKAKIEAAIKEAEDVLKDGDKAAIEAKTEALAKASQKLGEKIYGDAQGAAGAAGAAGAGTGGGEAKKDDSDVVDAEFTEVKDKKA
>NZ_AP012547.1|WP_084207285.1|1362013_1362610_-|nucleotide-exchange-factor-GrpE
MQDNSSTSPDTETAVPPAPTTGDTAPGSAGGMTPDAAQDGTVMPSLEEMLKTAELKAAEHHDAWLRAKAETENVRRRAQEDIGKAGKFAVEKFSGELLAVKDSLEAALSNENQSAENLKAGVELTLRQLIAAFEKSGLAEISPLGEKFDPHYHQAISQIEPPDATTEANTVLTVLQKGYALHGRVIRPALVVVAKGKA
>NZ_AP012547.1|WP_041098051.1|1362738_1364361_-|methyl-accepting-chemotaxis-protein
MARISDLKIWIRLTGAIWLMLLVVWSGMIFWESHVNRQTAIDQAREFSNSMHEATMAGLTGMMITGTVGQREVFLDQIKQLAIIRDLKVIRGDNVSKIFGPGTAKDAGALDAIEQQVMASGKEFSEVQSDPKGEYLRVVRPALALKNYLGKDCIACHQVPERSVLGAVSMKISLNHVNEAVAAQRIKSLLAALLVSLPLLAFIYLFIRNVVTVPLDKMVRGLREISSGEGDLTRRLDIRSQDEIGDAAAAFNEMMGKFSALVRHVGESAIQVSSASHTLADSAGQVAASSTQQDAKSAAAAAAVEQMLSSIGSIAQGMEHVHEQSRESLRRSEEGNESLSSLIGELGQVEDTVKEIAESVAHFVQSTEAITSMTRQVKDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAEKSSASASEIDAVTHRLSQQADIVKQSIERGLEHIASSQNSMETVAEVLATASTSVNEVDSGLDAIARATDEQRRVSGEVARNIESIAAMSRDNAAAVEQTAASAQKMEVLAETLQSTVGRFRT
>NZ_AP012547.1|WP_148312869.1|1364387_1367297_+|EAL-domain-containing-protein
MKQSNPGRPWVIRANWRHAPAGRHVCTIFVKCTCPKSINGYKDGNTLESLCMAKAPPAGGAASKMNSPFSQAASARLVKHHSLWLLAAFFIVLSFFSARNIYEKRADEVRAGFVYQWAETNTGISALIHHLQLERGLSSGYIASGGRFFADILVAQGKQTDQALTVVTPILFSDVHPHLANDKGHISALSDLQQIRNLRQLVSELVVSRDVTVDRYSAMIEMLFDEMNASLVTDNGTLRPQLAFMAFLQAKEMAGQERALLTAILSSGDFGSFSRMAALHRIRAIEELAVKRFLQFAEDDAKAGFEAILAKPFIREGDAIRRRVIAAGHSTAASVENLPSPERWFQVSSQKIDAMKELEHVISGSVKHSASELKQGASAGLVVSALSALASFLLGGMLLLQVRRGRKVAEKDLHLAATVFGNSVESIVITDAQSNIVDVNRSFTRISGYTREDVVGKHARLLRSSINDEKMYADMWQKLLESGSWEGELWNRRKTGENYPVLLSIVAVKDLKGVTTNYVGMIVDISKRKRAEKQVEQLRTFDSLTGLLSRNAWLASLEHAVADAQVRPRQFALLEVGLDRFKVINDSLSHAIGDMVLVEAADRIRNVLRRQDAASRPGGDRFSILLDHVPSPRSMEIICEKLLNAFVMPFMVDGHELHVSISIGVALHPDNGKDVGTLQSNAEAAMFRAKQDGRGCYKFYSEGMNADGVQLLTLERMLRLALERNEFELHYQPQVDAVDGRLVGVEALLRWNSSDRGPVSPSEFISVAEETGLIMPIGEWVMRQACRDAQEWRRSLGRDVPVSINLSARQFRSRDLLAAVQLILDETGLPSALLELEITEGLLIVDPEEAVDVLRGLRAMGTRTALDDFGTGYSSLAYLKTFPLDRLKIDQAFVRGLPEDESDKAISRAVVALGLNLNMEVLAEGVETEAQRDFLETAGCQVFQGYLHGRPMPAADLMQLIRSGALRLE

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Crispr_ID: NZ_AP012547_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012547_3

2644808-2644934

Orphan

Consensus_repeat	Method
CCCGGGGGGCGCATGCCTCCCTTGGGGCGGCCCGACGGGAGGCATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP012547_3

>merge|NZ_AP012547|3|2644808-2644934|CRISPRCasFinder
CCCGGGGGGCGCATGCCTCCCTTGGGGCGGCCCGACGGGAGGCATGATGAGCCCCCACGCTCACTTTCATTCGCTGCCCCCCGAGGGGGCGCATGCCTCCCTTGGGGCGGCCCGACGGGAGGCATGA

>NZ_AP012547|3|3|2644808-2644934|CRISPRCasFinder
CCCGGGGGGCGCATGCCTCCCTTGGGGCGGCCCGACGGGAGGCATGA	TGAGCCCCCACGCTCACTTTCATTCGCTGCCCC
CCGAGGGGGCGCATGCCTCCCTTGGGGCGGCCCGACGGGAGGCATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012547.1\|WP_041099708.1\|2649097_2651575_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_AP012547.1\|WP_171817420.1\|2635795_2637421_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|366994
NZ_AP012547.1\|WP_070099345.1\|2637452_2638175_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_AP012547.1\|WP_041102308.1\|2641894_2643457_+\|PepSY-domain-containing-protein	unknown	unknown	unknown
NZ_AP012547.1\|WP_052473613.1\|2634275_2635685_+\|caspase-family-protein	unknown	unknown	gnl\|CDD\|334197
NZ_AP012547.1\|WP_084207395.1\|2638263_2638755_-\|nitrous-oxide-reductase-accessory-protein-NosL	unknown	unknown	gnl\|CDD\|377526
NZ_AP012547.1\|WP_041099714.1\|2652662_2652842_-\|metal-binding-protein	unknown	unknown	gnl\|CDD\|378821
NZ_AP012547.1\|WP_041099718.1\|2653332_2654340_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012547.1\|WP_052473852.1\|2648391_2649039_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|372587
NZ_AP012547.1\|WP_041099712.1\|2652258_2652636_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012547.1\|WP_041102307.1\|2638762_2639368_-\|nitrous-oxide-reductase-accessory-protein-NosL	unknown	unknown	gnl\|CDD\|377526
NZ_AP012547.1\|WP_041099703.1\|2645979_2648244_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_AP012547.1\|WP_052473612.1\|2631626_2632082_+\|DUF1318-domain-containing-protein	unknown	unknown	gnl\|CDD\|377762
NZ_AP012547.1\|WP_148312934.1\|2645385_2645772_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012547.1\|WP_041099716.1\|2652838_2653333_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_AP012547.1\|WP_041099696.1\|2643453_2644071_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NZ_AP012547.1\|WP_041099694.1\|2639697_2641875_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_AP012547.1\|WP_084207392.1\|2632131_2634093_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|237804
NZ_AP012547.1\|WP_041099710.1\|2651571_2652252_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012547.1\|WP_041099698.1\|2644935_2645355_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917

Protein	Function_ID	Function_description	E-value
NZ_AP012547.1\|WP_041099708.1\|2649097_2651575_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_AP012547.1\|WP_041102307.1\|2638762_2639368_-\|nitrous-oxide-reductase-accessory-protein-NosL	gnl\|CDD\|377526	pfam05573, NosL, NosL. NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallo-centre assembly.	5.47892e-06
NZ_AP012547.1\|WP_052473613.1\|2634275_2635685_+\|caspase-family-protein	gnl\|CDD\|334197	pfam00656, Peptidase_C14, Caspase domain.	7.60554e-54
NZ_AP012547.1\|WP_084207395.1\|2638263_2638755_-\|nitrous-oxide-reductase-accessory-protein-NosL	gnl\|CDD\|377526	pfam05573, NosL, NosL. NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallo-centre assembly.	3.06387e-36
NZ_AP012547.1\|WP_041099714.1\|2652662_2652842_-\|metal-binding-protein	gnl\|CDD\|378821	pfam12156, ATPase-cat_bd, Putative metal-binding domain of cation transport ATPase. This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with pfam00403, pfam00122, pfam00702. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.	0.000199511
NZ_AP012547.1\|WP_052473852.1\|2648391_2649039_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|372587	pfam13386, DsbD_2, Cytochrome C biogenesis protein transmembrane region.	6.16859e-36
NZ_AP012547.1\|WP_070099345.1\|2637452_2638175_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.1411e-26
NZ_AP012547.1\|WP_171817420.1\|2635795_2637421_-\|c-type-cytochrome	gnl\|CDD\|366994	pfam02239, Cytochrom_D1, Cytochrome D1 heme domain. Cytochrome cd1 (nitrite reductase) catalyzes the conversion of nitrite to nitric oxide in the nitrogen cycle. This family represents the d1 heme binding domain of cytochrome cd1, in which His/Tyr side chains ligate the d1 heme iron of the active site in the oxidized state.	3.64643e-116
NZ_AP012547.1\|WP_041099703.1\|2645979_2648244_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.45855e-39
NZ_AP012547.1\|WP_052473612.1\|2631626_2632082_+\|DUF1318-domain-containing-protein	gnl\|CDD\|377762	pfam07027, DUF1318, Protein of unknown function (DUF1318). This family consists of several bacterial proteins of around 100 residues in length and is often known as YdbL. The function of this family is unknown.	2.2593e-09
NZ_AP012547.1\|WP_041099696.1\|2643453_2644071_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	3.59092e-21
NZ_AP012547.1\|WP_041099694.1\|2639697_2641875_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.08784e-64
NZ_AP012547.1\|WP_084207392.1\|2632131_2634093_+\|pyruvate-kinase	gnl\|CDD\|237804	PRK14725, PRK14725, pyruvate kinase; Provisional.	0
NZ_AP012547.1\|WP_041099716.1\|2652838_2653333_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.6501e-39
NZ_AP012547.1\|WP_041099698.1\|2644935_2645355_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	7.28742e-47

>NZ_AP012547.1|WP_041099696.1|2643453_2644071_+|energy-transducer-TonB
MIAASPRWPGLVFVILLHAAALGALWQHRLLPSSSTIDALFVHFIAPPAPPKAEKPKSPPPKPQRVEKPQPRQLVAEAPVTAPIDYVAPLPPRQEPVIDAPRMPLSANPMALGSELSLACPERAPPVYPAMSRRLGEVGIVVLRVELDEQGLVANAKVETASGFERLDHAALAAVKTWRCNPPQRNGQPTRAIAKQPFHFVLQGH
>NZ_AP012547.1|WP_041102308.1|2641894_2643457_+|PepSY-domain-containing-protein
MSVAKRWLYIAHRWTGIAVCLLMAVWFLSGVVMMYVGYPKLTPLERLEHLPDLSLSESCCISPQQALSAARKALPEISSASEKPARGRVGDGLPALSLVMIGNAPYWLASDGRNRQTAVEAATGKAMDHVDEAHALMVARAFAPESQPSLMEVVRQDIFTVSRGLDHHRPLFRIALNDTNGTELYISSRTGEVIRDSTRLERGWNYLGAILHFFYPLKGEFFDKWRSDIIIYTALVGTVLALLGMWVGVLRWRFKGRFANGSRSPYRNNWTRWHHISGLLFGLITLTWVLSGMLSLNPWRVFESGGPRPDHRAFAGVSLEHARFTLSPGEAVRRANFPVREISVRLFDGHPYYLLRAADGRSEIVAADDSSNANRPIEMIPKDALLAAAARLIPDYTIIRATLLTDYDNYYYGRQPHNLSGHIERRLPVLRVEFDDPHHTWVHLDPHTASIFNSLDSTGRVRRWLFNFLHSFDLRGFVNRRPLWDTTLILLSIGGFVLCISGVVIGWRRLRRPAFTKAAE
>NZ_AP012547.1|WP_041099694.1|2639697_2641875_+|TonB-dependent-siderophore-receptor
MKTRYPRPSERVNKCWAALAIAGLVAIPAAHAQTNLPAITVTGAGLEPNARLPLDTTTQTGSRLGLTARETAATVNIVDRDTIDERGARSTIEAVSSAPGISEHGTPGSGGVLSYRGFTSSQITQMFNGIDVGYIISTFPVDSWLLDRVEVLGGASSFLYGSGAVGGAVNYVSKLATNQPLTQETLFRAGSFGQYQAAYGVNGRVGDADSHHFLRADVSTQGWDGYVERTDGRSFVFAGSWLWEISPRLSHTLAWEYQTKDEQPYWGTPLLNPTVNSQFDPAVRFKNYNAADGAYEQDVQWFRSILDYRLSAATQIKNTLYHYDADRDYRNVESYRYNAANTLVTRGSAYATAHGQSLIGDKIELLHKGTLLGMPSTSSIGLDISRNKQTRYPAATVTNVNTVDPVNFTVGNYFQIAGTGLATNPERTNRLYTKAIYAENLTKLTNRWGLISGLRAEHIKLAVQNFRTVNADNPLYFEQTYTPLTGRLGFMYDMTPTANAYLTYSTAADPPAGILTTTNYGAIQNWDLTTGNQIELGSKFDFLEGRGNATLAAYRIVRKNLSTPDPDNPNVSVPIGQQSSRGIEAQAGIRLNRQWRLQGNLAVVSAQYDKFIQKVGTVAVSRAGNRPTNIPAHVANLYLTWDANAAWSTTLETRYVGDRYADVANEQRFNAYTLWGASVSYKIDRQNTLTLRGRNLGDEIYFTSGSSQVRIGEPRAFELVLQSKF
>NZ_AP012547.1|WP_041102307.1|2638762_2639368_-|nitrous-oxide-reductase-accessory-protein-NosL
MDRREALKLSLLAGVGLAAGGAQAQQACATDGTPAQFTPKKPADAKPLENELEKYPKCPYCGMDRKEHHRTRMLVQYSDDLVDGTCSIHCLGLSLGVNIDREPKAILGPDYGSTAEPRPLLAVEKLTYLIGADLKHAMTKRSKHSFAAKEVAEQFKQKHGGEFGDFNEALKQSYLDMAADVAQIRKNREERRKKMMMHKQG
>NZ_AP012547.1|WP_084207395.1|2638263_2638755_-|nitrous-oxide-reductase-accessory-protein-NosL
MNRRALLLFLLASLLPAATLAQGAAKLPKPGPKDLCPVCGMLVSKYPNWIATIVYKDGHAHHFDGAKDMFKMWFEPAKYVAGHKREDMAALWVTDFYNLQPVDARKAWFVVGSDVLGPMGHELVALASREDAADFLKDHKGRRILTFEQVAKDLPFRLDDGKF
>NZ_AP012547.1|WP_070099345.1|2637452_2638175_-|Crp/Fnr-family-transcriptional-regulator
MTKTNHHRSCQGRSNCNACALRLEMVCGDVSLEDLIDFHAGIDDFDFAPGATLFAMDTPADAVYCIRGGAVKMVHYEPSGVVRIVRVLKIGDVAGLEATFRERHEYSAIAVGTVRACRIPMPYFHKFIESHGSLQMRLMETSQAALSEAQNWLAQIVGGNIPARTRMARLLLKLRTGNSDRIIRFTGEDMAAILGITFETVSRLVSEFKRLGILQYIYGSKNTKYFRGDIAALEKIAQEG
>NZ_AP012547.1|WP_171817420.1|2635795_2637421_-|c-type-cytochrome
MSAAPRAGTRLSVRNLMRHLGLLCGLAAIAASSIAADPAPLYQQHCAVCHGPGRLGVTGPALLPESLARLRKPEAIKTITEGRAATQMLGFADRLNKDEIAALADYIYTAVSPAPTLSEADIKASRIVNFAPGSLSAKPAEVFQGVDMMNLFIVVETGDHHVTILDGDKLEPIHRFPSRYALHGGPKFTPDGRYVFFASRDGWITKFDIWNLKVVAEIRAGINTRNVAVSGDGKYLAVANYLPHTLVLLDADLNLLKVHPVLDKDRKESSRVSAVYDAAPRQSFVAALKDVPEVWEISYNPKADDIPVGMIHDFKYKEGSFIPGFLNPRRTFLTEPLDDFFFTQNYSELMGSSREAGKGQVVHLDVRKKIADLKLPGMPHLGSGITWNYKPPQGAQDRMVMATPNLKEGLITVIDMKDWSTIKTIPTLGPGFFMRSHENTPYAWTDSMMSKGKDTLQVIDKRTLEKVAEVKTNPGKTLAHVEFTRDGKYVLASLWERKADGGALIVFDAATFKEVKRIPMDKPVGKYNLYNKIMRSEGTSH
>NZ_AP012547.1|WP_052473613.1|2634275_2635685_+|caspase-family-protein
MLLFWNGLAGAAPDSRNLQVAAGGEKRVALVIGNSAYPGLAALKNPVNDASDIAAKLRSLGFDVTLKTNVNLKQMLRAMTEFGGKLSDGSVALFFYAGHGMQVRGKNYLIPVDAEILSEAAVSSEAADADQLLDKLAPARVSMVILDACRNNPFERKFRSSGGGGLAQMNAPAGTLVAYATAPGKTASDGTGRNGLYTQELLRAMGEPNRKVEDVFKRVRTNVLKKSGETQIPWESSSLTGDFYFMPGAALTPSLAAPETPPPPATAVDEAERMLWQAVEQSNNPADYEIYLKQYSRGHYVQLAMARLDQLKEEAATQEESNAWKTAEQGSKADVATYLERFPNGKYAGLARLRLARIQTEETKATDIYVGKWICVMKAATGPGHTCHFEITRGRNNDILIAGAYEWKGFIGAGVKKPFSNARLLDDQLEFQIVNISDHPNSTVKLRPVSASRLEGTVNDSSLIYATKQ
>NZ_AP012547.1|WP_084207392.1|2632131_2634093_+|pyruvate-kinase
MAAKTPHPIKKSRGKHGAAKTAPRPAAISGVQDPDTWDEAACDGIIGQLWTLRDKLLAYENSLAPQLDKLDPGHRASARNFAHYLRLRQSDRRPLQESLARVGLSSLGRAESHVLANLDKVLGILHRMTGKPWRPPLQDEPAGMGSSRKLLERHTDELLGAPPPGRAVRIMVTLPSEAAADFGMIRQLVQSGMDIARINCAHDGPDAWRAMAANVRRAARAERRPVRILMDVGGPKLRTGIIPAGAPVLKLRPLRDGFGRVVTPCLVGLRASGASLPIAGAQAHIGVDAAWLEQLEPGDHLDLTDARGAKRSLLVVQCEDAGVLAECTRTAYLVPETRLKRRRKGARPRSSDVSDLPSPEGSLELVRGAILRLTRDANHAPVFKSKKKQRQPVPAVACTLPEIFKDVCVGERIWFDDGRIGGVIRRIEKDWLEVEITHARDCGEKLAGDKGINLPDSQLKLPALTAKDIEDLAIVAEEADLVGLSFVQRASDITTLRAGLRQLGKPDLGIVLKIETRRAFENLPELMFAAMACKAAGIMIARGDLAVECGYERLAEVQEEILWAAEAAHMPVIWATQVLETLAKTGLPSRAEITDAAMGERAECVMLNKGPHITEAMRTLDDILRRMQAHQAKKRPLLRALRAWSLPSEIQSQ
>NZ_AP012547.1|WP_052473612.1|2631626_2632082_+|DUF1318-domain-containing-protein
MKFKRYALLFACLALPVAAADSAKDSAKDAAKPAINLDIGAPTVIVVKHSLTQRTSRLVRFYEAGEIGLGHDGLIYLRDNSRMSLAKRQIAEKLIDAENPERRALIQALADSNHRRDAEPEIWELMRERWNKQWKSGWWLRDAQGKWSKKP
>NZ_AP012547.1|WP_041099698.1|2644935_2645355_+|biopolymer-transporter-ExbD
MAMGSFDSRRHTPPMADMNVVPLVDVMLVLLVIFIVTAPLLTHAVKIDLPKASSSANVTKPEHIEFGIRESGELFWSGEPVSLGDLGPRFKAEAQRQPQPELHLRADRNARYERVAEVMATAAKAGLTRIGFVTEPAGQ
>NZ_AP012547.1|WP_148312934.1|2645385_2645772_+|hypothetical-protein
MTLVLIRRPADSAKQVTFDVLMRRALLRATQIATEETAQLGYFPPPILIEIRRAGNGPRFEKDGQIEYLARNSGDLPGAVAILQDPPDSDGDLVRKIDADHECPVSMRGMEPIFSLRLPKFHVAYHRM
>NZ_AP012547.1|WP_041099703.1|2645979_2648244_+|TonB-dependent-receptor
MQRKFLSATLAALPCIAFATDDVKTLSTLVITGQSTAEKFRGDAVDSVSLAGQRAATSDTATLLRDVPGVSLYGAGAVSSLPAIHGLADDRLRIKVDGMDLISACGNHMNPPLSYIDPTAVGSIKVFAGIAPVSSGGDSIGGTILVDSATPEFARAGQGTLTKGEAGVFYRSNGNANGGNLSATIASEKLSVSYSGSTAKGDDYTAGGNFKPAGRAFIADGRSIQNSTKWLAGDEVGSTMYKSTNQSLGFALRHDNHLVEFKVGTQDIPYQGFPNQRMDMTANDGVHLNLRYTGQFDWGSLQARVYREQTRHKMNFLEDKAYWYRGNPTPPPVAIPAPGMPMDTEGSNTGATLKADIILSERDLLRVGAELQQYRFSDWWPPAGNGGMSPNTFWDINNGERDRHAVFGEWEARWNPQWTSLLGVRHETVKMNTGTVQGYNAGYAADATRFNNSDRRKTDRNWDITALARHAPTKTQTIEFGYARKTRSPNLYERYTWSTGGMAMFMINMVGDGNGYVGNLDLKPEVAHTLSATFDWHDAEQKSWGLKVTPYATYVKDYINAQRCFTGAGVCVAANVTRTNDFVFLKYGNQDARLHGLDITGHLPLARNTGFGSFTLSGMLSYVRGKTADGASDNLYNIMPLNAKLALEQNLGNWSGTAETQLVARKSDVSQVRNEVVTPGYALLNLRGSYTWKQMRFDVGIDNVFDRLYFHPLSGAYVGQGVTMPPTASAGTPPWGTAIPGMGRSIYAGMNYKF
>NZ_AP012547.1|WP_052473852.1|2648391_2649039_-|sulfite-exporter-TauE/SafE-family-protein
MVGLLGSGHCIGMCGGLVSGCFMKLQAKGPWPYAAYHASRIAIYAGVGLVAALLGTVLVASGMTGLAQGVLQILAGAIVILLGLDLLGVSPIRNAYGFAPMAWLRKQFVTASQKGPVLGAAISGAINGLMPCSMTMAMAVKATTAASPPEGMLLMLAFGAGTLPSMLFASVLFGKLGPKLRGGLQKLAALFVIALGVATLWQGVRFYLVMYKLVA
>NZ_AP012547.1|WP_041099708.1|2649097_2651575_-|copper-translocating-P-type-ATPase
MKNFRVVHRLSRRIRLVAPALNKQPERCYILEILLRKHGAVKDVRAVPQIGSVTLHYDPSQLAEERLLAIVDAVIGNIAVAPAPSARDTASGFPGGINLSPEPVSATAIDGPAQECNAAVEGMTCASCALLIEMSLQRDPRVDAAAVNFAAGTVTVKGHLPREELFATVGRLGYEARPMDTLAQRRLIVEREKARLADAKKRLIHAAWLTAPVMVSGMLMHQSPVLRLLELGLSTVVVFGSGSEIFRKAWALAKQREANMDTLISMGAGAAYLYSLPGVLRPHHHVYFESAAAIVAFVLGGRYMEERAKGKASEAIRKLIELQPETAIRVTAGGDEIIAIDDVQPGDRLRVRPGDKVPTDGVVEEGASNLDESMLTGESLPVSKGIGDVVVGGCLNGNGGFIMRVTAVGGDTVLSGIVKLVDHAQGSKLPVQKLADRISARFVPAVAGIGGLTLAGWLMAGHPASRALAHSVAVLLIACPCALGLATPTAIMVGTGQAARRGIYIRNGEALETAATLNTLVFDKTGTITEGKPTVTDFLLLEGRDEARTLALVAGVEAHSEHFLARAINAWCRARAVSPAPTLDFEAWPGRGVRALADDHSEILVGNATLLEAAGIDFRAQQDQAQAWAEQGKTPVYVAIDGVCVALFAIADQARPGAKEAIALLHRLGLQTVMATGDVAAVANHVARQVGIDRVIARATPADKLELIRALQAENRRVGMIGDGINDAPALAAADVGFAIGGGADIAVESADITLVGGDIARVAGGIELSRRTMGIIRQNLFWALGYNVVAIPVAAAGRLNPMIAAAAMAMSSVSVVTNSLRLQK
>NZ_AP012547.1|WP_041099710.1|2651571_2652252_-|hypothetical-protein
MNANDLARRIVVRHREAGYLRLELPAELCHAGAAELIDGALRQVAGVYRVTFYVSQRRLAVSYDAHVCTAADVARGLKACLHALPDEAIAAAPARNTMTTLAGKLNPGLHDAARQARRAFANLRGRIERLRHPQAAPGSLQARLQPMLANALSEKAIINFLNDLVAFYLVKVHWELISQRWLKDPVKHANAWLTVFYLMFLLVRYRKAIAAEVAKTTAKPVPVAQP
>NZ_AP012547.1|WP_041099712.1|2652258_2652636_-|hypothetical-protein
MMNEEMMKHGAGMMGAGAGMMSHPVAKGAMMAATGYAATRTLVGHGLLRSPLMLLAGGIAGGIAVGYLLRKHEKEIVLAVSKAIGMGKDFVMQQRENLDDLMAEAKETEAQAAAAPASPDAQAAE
>NZ_AP012547.1|WP_041099714.1|2652662_2652842_-|metal-binding-protein
MSASPDPKAPCDLCSLPVGIKPFLLETPEKSLAFCCEGCKGIYEMLHQINKSPDPLADN
>NZ_AP012547.1|WP_041099716.1|2652838_2653333_-|TlpA-family-protein-disulfide-reductase
MRFLITALSILLLAACGGDKPPAKLNIGDIAPTFQTFRADGMPAHFPAAWAGKPLVIRFWADWCKYCEGEMKDIEKVYQRLKPRGLEVIAINAGQDRKTVVEFMKKLGVSYPALLDEDSSIAKRYGVVGLPTTYFVDAKGIVRAKLIGEADEAGFERAALEALK
>NZ_AP012547.1|WP_041099718.1|2653332_2654340_-|hypothetical-protein
MLFQPAIIALLLASALCVLALAASAPFALEVIRRWDIGSGSERQLQLERRTYLFSTLLSFVLALQLAAVLLFVFNAEKMSGMFVGAMCAVGTLNVNAFGFPALNAKIAVFFLAAMWLAINHIDSRARDYPLVRIKYALLLLLAPLLVASGWVELQYFLGLKADVITSCCGSLFSEGSPTLAAEASALPPRPAMWLFYGSLGAAIAVAAWHGLAGGRGSAYALAAASAIGFAASIAGILSFVSLYIYEHPNHHCPFCILKPEYGYQGYWLYLPLFGATAAGLAVGAIQPFARIASLREIVPGFSRNLAAIAANGFALTAAIATAMIWQSRLILLEH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP012547_2	2.4\|1352468\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352468-1352497	30	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	73404-73433	5	0.833
NZ_AP012547_2	2.4\|1352468\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352468-1352497	30	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	73403-73432	5	0.833
NZ_AP012547_2	2.4\|1352468\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352468-1352497	30	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	73403-73432	5	0.833
NZ_AP012547_2	2.4\|1352468\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352468-1352497	30	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	6159-6188	5	0.833
NZ_AP012547_2	2.4\|1352468\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352468-1352497	30	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	76813-76842	5	0.833
NZ_AP012547_2	2.4\|1352468\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352468-1352497	30	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	73404-73433	5	0.833
NZ_AP012547_2	2.5\|1352535\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352535-1352564	30	MN602268	Bacteriophage DSS3_MAL1, complete genome	58394-58423	5	0.833
NZ_AP012547_2	2.1\|1352267\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352267-1352296	30	NZ_CP013419	Burkholderia sp. MSMB0266 plasmid pMSMB0266, complete sequence	231687-231716	6	0.8
NZ_AP012547_2	2.4\|1352468\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352468-1352497	30	NC_018269	Marinomonas phage P12026, complete genome	3691-3720	6	0.8
NZ_AP012547_2	2.5\|1352535\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352535-1352564	30	NC_048047	Caulobacter phage CcrBL9, complete genome	290375-290404	6	0.8
NZ_AP012547_2	2.5\|1352535\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352535-1352564	30	NC_008383	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8, complete sequence	27357-27386	6	0.8
NZ_AP012547_2	2.5\|1352535\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352535-1352564	30	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	467154-467183	6	0.8
NZ_AP012547_2	2.5\|1352535\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352535-1352564	30	NZ_CP022670	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR5, complete sequence	36636-36665	6	0.8
NZ_AP012547_2	2.5\|1352535\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352535-1352564	30	MN656993	Enterobacter phage ATCEA85, complete genome	11432-11461	6	0.8
NZ_AP012547_2	2.13\|1353072\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353072-1353101	30	NC_002575	Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence	6459-6488	6	0.8
NZ_AP012547_2	2.13\|1353072\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353072-1353101	30	NZ_KY000038	Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence	56157-56186	6	0.8
NZ_AP012547_2	2.1\|1352267\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352267-1352296	30	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	235779-235808	7	0.767
NZ_AP012547_2	2.2\|1352334\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352334-1352363	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	220959-220988	7	0.767
NZ_AP012547_2	2.2\|1352334\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352334-1352363	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	15516-15545	7	0.767
NZ_AP012547_2	2.2\|1352334\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352334-1352363	30	NC_047905	Streptomyces phage Attoomi, complete genome	16021-16050	7	0.767
NZ_AP012547_2	2.3\|1352401\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352401-1352430	30	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	11317-11346	7	0.767
NZ_AP012547_2	2.3\|1352401\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352401-1352430	30	KT716399	Pseudomonas phage POR1, complete genome	28661-28690	7	0.767
NZ_AP012547_2	2.9\|1352804\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1352804-1352833	30	NZ_CP021457	Lactobacillus brevis strain ZLB004 plasmid p1, complete sequence	74191-74220	7	0.767
NZ_AP012547_2	2.9\|1352804\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1352804-1352833	30	NZ_CP019736	Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-2, complete sequence	73891-73920	7	0.767
NZ_AP012547_2	2.9\|1352804\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1352804-1352833	30	NZ_CP019745	Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-2, complete sequence	25033-25062	7	0.767
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	11799-11828	7	0.767
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP013577	Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence	498-527	7	0.767
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP013549	Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence	498-527	7	0.767
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	498-527	7	0.767
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP013534	Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence	498-527	7	0.767
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	495-524	7	0.767
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP013545	Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence	498-527	7	0.767
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	498-527	7	0.767
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP013571	Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence	498-527	7	0.767
NZ_AP012547_2	2.14\|1353139\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353139-1353168	30	NZ_CP011248	Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence	129242-129271	7	0.767
NZ_AP012547_2	2.14\|1353139\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353139-1353168	30	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	25374-25403	7	0.767
NZ_AP012547_2	2.14\|1353139\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353139-1353168	30	NZ_CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	129003-129032	7	0.767
NZ_AP012547_2	2.14\|1353139\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353139-1353168	30	NZ_CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	129087-129116	7	0.767
NZ_AP012547_2	2.14\|1353139\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353139-1353168	30	NC_030907	Gordonia phage GMA5, complete genome	9939-9968	7	0.767
NZ_AP012547_2	2.1\|1352267\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352267-1352296	30	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	86707-86736	8	0.733
NZ_AP012547_2	2.1\|1352267\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352267-1352296	30	NZ_CP006370	Aureimonas sp. AU20 plasmid pAU20c, complete sequence	221707-221736	8	0.733
NZ_AP012547_2	2.5\|1352535\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352535-1352564	30	NZ_CP044353	Xylella fastidiosa strain ATCC 35879 plasmid pXF879-41, complete sequence	35801-35830	8	0.733
NZ_AP012547_2	2.10\|1352871\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1352871-1352900	30	NZ_LR134258	Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence	2297-2326	8	0.733
NZ_AP012547_2	2.10\|1352871\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1352871-1352900	30	KY271401	Klebsiella phage 1 LV-2017, complete genome	19766-19795	8	0.733
NZ_AP012547_2	2.11\|1352938\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1352938-1352967	30	CP000617	Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence	5833-5862	8	0.733
NZ_AP012547_2	2.11\|1352938\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1352938-1352967	30	NZ_CP018385	Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence	294155-294184	8	0.733
NZ_AP012547_2	2.11\|1352938\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1352938-1352967	30	CP000619	Burkholderia vietnamiensis G4 plasmid pBVIE03, complete sequence	175305-175334	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1613992-1614021	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	277963-277992	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	846776-846805	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1214837-1214866	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1503169-1503198	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	47255-47284	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	998464-998493	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	515239-515268	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	40803-40832	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	366835-366864	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	562166-562195	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	853491-853520	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	499685-499714	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	53074-53103	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	743555-743584	8	0.733
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	548924-548953	8	0.733
NZ_AP012547_2	2.1\|1352267\|30\|NZ_AP012547\|CRISPRCasFinder,CRT	1352267-1352296	30	NC_018849	Propionibacterium phage P105, complete genome	4121-4150	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	710031-710060	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	159826-159855	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	850218-850247	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	188178-188207	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	465617-465646	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	783290-783319	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	315837-315866	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	993161-993190	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	424734-424763	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1437201-1437230	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	4949-4978	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	237198-237227	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	256908-256937	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	102813-102842	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	783100-783129	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1307700-1307729	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	289439-289468	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	462367-462396	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	246194-246223	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	265983-266012	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	301316-301345	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	586242-586271	9	0.7
NZ_AP012547_2	2.12\|1353005\|30\|NZ_AP012547\|CRISPRCasFinder,CRT,PILER-CR	1353005-1353034	30	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	759173-759202	9	0.7

1. spacer 2.4|1352468|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 5, identity: 0.833

---gcaaatcgacaagcaattgcgttcatctct	CRISPR spacer
ccgacaaat---caggcaattgcgttcatctct	Protospacer
   .*****   **.******************

2. spacer 2.4|1352468|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 5, identity: 0.833

---gcaaatcgacaagcaattgcgttcatctct	CRISPR spacer
ccgacaaat---caggcaattgcgttcatctct	Protospacer
   .*****   **.******************

3. spacer 2.4|1352468|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 5, identity: 0.833

---gcaaatcgacaagcaattgcgttcatctct	CRISPR spacer
ccgacaaat---caggcaattgcgttcatctct	Protospacer
   .*****   **.******************

4. spacer 2.4|1352468|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 5, identity: 0.833

---gcaaatcgacaagcaattgcgttcatctct	CRISPR spacer
ccgacaaat---caggcaattgcgttcatctct	Protospacer
   .*****   **.******************

5. spacer 2.4|1352468|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 5, identity: 0.833

---gcaaatcgacaagcaattgcgttcatctct	CRISPR spacer
ccgacaaat---caggcaattgcgttcatctct	Protospacer
   .*****   **.******************

6. spacer 2.4|1352468|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 5, identity: 0.833

---gcaaatcgacaagcaattgcgttcatctct	CRISPR spacer
ccgacaaat---caggcaattgcgttcatctct	Protospacer
   .*****   **.******************

7. spacer 2.5|1352535|30|NZ_AP012547|CRISPRCasFinder,CRT matches to MN602268 (Bacteriophage DSS3_MAL1, complete genome) position: , mismatch: 5, identity: 0.833

cgccgagcttgaagaagtcgcgccgaacgt	CRISPR spacer
cgccaagcttgaagaagtcgcgatgatcct	Protospacer
****.***************** .** * *

8. spacer 2.1|1352267|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP013419 (Burkholderia sp. MSMB0266 plasmid pMSMB0266, complete sequence) position: , mismatch: 6, identity: 0.8

cgccatcaacaacgtcctcgcgctcgtgca	CRISPR spacer
ggtcgtccccaacgtccacgcgctcgtgca	Protospacer
 *.*.**  ******** ************

9. spacer 2.4|1352468|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NC_018269 (Marinomonas phage P12026, complete genome) position: , mismatch: 6, identity: 0.8

gcaaatcgacaagcaattgcgttcatctct	CRISPR spacer
ggaaatcgccaagcaattgcggtcaattat	Protospacer
* ****** ************ *** .* *

10. spacer 2.5|1352535|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 6, identity: 0.8

cgccgagcttgaagaagtcgcgccgaacgt	CRISPR spacer
ggtagagcttgaagcagtcgcgccggacct	Protospacer
 *. ********** **********.** *

11. spacer 2.5|1352535|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NC_008383 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8, complete sequence) position: , mismatch: 6, identity: 0.8

cgccgagcttgaagaagtcgc--gccgaacgt	CRISPR spacer
cgccgagcttgaagaagccgccgacccagc--	Protospacer
*****************.***  .** *.*

12. spacer 2.5|1352535|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 6, identity: 0.8

cgccgagcttgaagaagtcgc--gccgaacgt	CRISPR spacer
cgccgagcttgaagaagccgccgacccagc--	Protospacer
*****************.***  .** *.*

13. spacer 2.5|1352535|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP022670 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR5, complete sequence) position: , mismatch: 6, identity: 0.8

cgccgagcttgaagaagtcgc--gccgaacgt	CRISPR spacer
cgccgagcttgaagaagccgccgacccagc--	Protospacer
*****************.***  .** *.*

14. spacer 2.5|1352535|30|NZ_AP012547|CRISPRCasFinder,CRT matches to MN656993 (Enterobacter phage ATCEA85, complete genome) position: , mismatch: 6, identity: 0.8

cgccgagcttgaagaagtcgcgccgaacgt	CRISPR spacer
cgccgaccttgaagaagtcgagcaggatct	Protospacer
****** ************* ** *.*. *

15. spacer 2.13|1353072|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NC_002575 (Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

accctcgtaagccgccccgctggccacctc	CRISPR spacer
gccctcggaagccaccccgctggcgatccc	Protospacer
.****** *****.********** *.*.*

16. spacer 2.13|1353072|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000038 (Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence) position: , mismatch: 6, identity: 0.8

accctcgtaagccgccccgctggccacctc	CRISPR spacer
gccctcggaagccaccccgctggcgatccc	Protospacer
.****** *****.********** *.*.*

17. spacer 2.1|1352267|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

cgccatcaacaacgtcctcgcgctcgtgca	CRISPR spacer
ggagatcatcaacgtcctcgcgcacgtcga	Protospacer
 *  **** ************** ***  *

18. spacer 2.2|1352334|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

tgctcgtatcgcgccccggtggcgtggtcc	CRISPR spacer
ggctcgtaacgcgcctcggtggcgtccttg	Protospacer
 ******* ******.*********  *.

19. spacer 2.2|1352334|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.767

tgctcgtatcgcgccccggtggcgtggtcc	CRISPR spacer
ggctcgtaacgcgcctcggtggcgtccttg	Protospacer
 ******* ******.*********  *.

20. spacer 2.2|1352334|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NC_047905 (Streptomyces phage Attoomi, complete genome) position: , mismatch: 7, identity: 0.767

tgctcgtatcgcgccccggtggcgtggtcc	CRISPR spacer
cgcttcacgcgggccccggtggcgtggtcc	Protospacer
.***.    ** ******************

21. spacer 2.3|1352401|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 7, identity: 0.767

taacgcgcagtgcggccaaggcaacgcggg	CRISPR spacer
tgtcggtgagtgcggccagggcaacgcggc	Protospacer
*. **   **********.**********

22. spacer 2.3|1352401|30|NZ_AP012547|CRISPRCasFinder,CRT matches to KT716399 (Pseudomonas phage POR1, complete genome) position: , mismatch: 7, identity: 0.767

taacgcgcagtgcggccaaggcaacgcggg	CRISPR spacer
agacgcgcagagcggtcaaggcaacaagcg	Protospacer
 .******** ****.*********. * *

23. spacer 2.9|1352804|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021457 (Lactobacillus brevis strain ZLB004 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

gcgttgcgaataattgtgcggcagacaaag	CRISPR spacer
caattgttgataattgtgcggcaggcaaag	Protospacer
  .***. .***************.*****

24. spacer 2.9|1352804|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019736 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-2, complete sequence) position: , mismatch: 7, identity: 0.767

gcgttgcgaataattgtgcggcagacaaag	CRISPR spacer
caattgttgataattgtgcggcaggcaaag	Protospacer
  .***. .***************.*****

25. spacer 2.9|1352804|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019745 (Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-2, complete sequence) position: , mismatch: 7, identity: 0.767

gcgttgcgaataattgtgcggcagacaaag	CRISPR spacer
caattgttgataattgtgcggcaggcaaag	Protospacer
  .***. .***************.*****

26. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 7, identity: 0.767

---cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgcgg---cctcgatggtcgcgttcagcgcca	Protospacer
   **.   **** **************** *.

27. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013577 (Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence) position: , mismatch: 7, identity: 0.767

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
ccccttcccccatggtcgcggtcagcgttg	Protospacer
*   ****.*********** ****** .*

28. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013549 (Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence) position: , mismatch: 7, identity: 0.767

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
ccccttcccccatggtcgcggtcagcgttg	Protospacer
*   ****.*********** ****** .*

29. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 7, identity: 0.767

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
ccccttcccccatggtcgcggtcagcgttg	Protospacer
*   ****.*********** ****** .*

30. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013534 (Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence) position: , mismatch: 7, identity: 0.767

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
ccccttcccccatggtcgcggtcagcgttg	Protospacer
*   ****.*********** ****** .*

31. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 7, identity: 0.767

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
ccccttcccccatggtcgcggtcagcgttg	Protospacer
*   ****.*********** ****** .*

32. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013545 (Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence) position: , mismatch: 7, identity: 0.767

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
ccccttcccccatggtcgcggtcagcgttg	Protospacer
*   ****.*********** ****** .*

33. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 7, identity: 0.767

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
ccccttcccccatggtcgcggtcagcgttg	Protospacer
*   ****.*********** ****** .*

34. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013571 (Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence) position: , mismatch: 7, identity: 0.767

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
ccccttcccccatggtcgcggtcagcgttg	Protospacer
*   ****.*********** ****** .*

35. spacer 2.14|1353139|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011248 (Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence) position: , mismatch: 7, identity: 0.767

agttgaagacatccagcggatactcgcagg	CRISPR spacer
tgcagaagacaccaagcggatactcgcaaa	Protospacer
 *. *******.* **************..

36. spacer 2.14|1353139|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 7, identity: 0.767

agttgaagacatccagcggatactcgcagg	CRISPR spacer
ggcggaagacatccagcggatgctcgggga	Protospacer
.*. *****************.**** .*.

37. spacer 2.14|1353139|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 7, identity: 0.767

agttgaagacatccagcggatactcgcagg	CRISPR spacer
tgcagaagacaccaagcggatactcgcaaa	Protospacer
 *. *******.* **************..

38. spacer 2.14|1353139|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 7, identity: 0.767

agttgaagacatccagcggatactcgcagg	CRISPR spacer
tgcagaagacaccaagcggatactcgcaaa	Protospacer
 *. *******.* **************..

39. spacer 2.14|1353139|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NC_030907 (Gordonia phage GMA5, complete genome) position: , mismatch: 7, identity: 0.767

agttgaagacatccagcggatactcgcagg	CRISPR spacer
cggccaagaaatcgagcggatactcgcacg	Protospacer
 * . **** *** ************** *

40. spacer 2.1|1352267|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

cgccatcaacaacgtcctcgcgctcgtgca	CRISPR spacer
ggccgtcgacaacgtcctcgcgctccgctt	Protospacer
 ***.**.*****************   .

41. spacer 2.1|1352267|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP006370 (Aureimonas sp. AU20 plasmid pAU20c, complete sequence) position: , mismatch: 8, identity: 0.733

cgccatcaacaacgtcctcgcgctcgtgca	CRISPR spacer
cgtggtcaacaacgtcctctcgctcgccgc	Protospacer
**. .************** ******.

42. spacer 2.5|1352535|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NZ_CP044353 (Xylella fastidiosa strain ATCC 35879 plasmid pXF879-41, complete sequence) position: , mismatch: 8, identity: 0.733

cgccgagcttgaagaagtcgcgccgaacgt	CRISPR spacer
cgccgagcttgaagaaggcgcattggtcac	Protospacer
***************** ***...*. *..

43. spacer 2.10|1352871|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134258 (Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgttatcgggcttatcgcgttcgtcta	CRISPR spacer
tgatgttatcgggcttaccgggttcggttc	Protospacer
.  **************.** ***** .*

44. spacer 2.10|1352871|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 8, identity: 0.733

ctttgttatcgggcttatcgcgttcgtcta	CRISPR spacer
tgatgttatcgggcttaccgggttcggttc	Protospacer
.  **************.** ***** .*

45. spacer 2.11|1352938|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to CP000617 (Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence) position: , mismatch: 8, identity: 0.733

atgcttgcactctgcccccgaaataaaacg	CRISPR spacer
tggcttgcggtctgcccccgaaataatttt	Protospacer
  ******. ****************  .

46. spacer 2.11|1352938|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018385 (Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

atgcttgcactctgcccccgaaataaaacg	CRISPR spacer
tggcttgcggtctgcccccgaaataatttt	Protospacer
  ******. ****************  .

47. spacer 2.11|1352938|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to CP000619 (Burkholderia vietnamiensis G4 plasmid pBVIE03, complete sequence) position: , mismatch: 8, identity: 0.733

atgcttgcactctgcccccgaaataaaacg	CRISPR spacer
tggcttgcggtctgcccccgaaataatttt	Protospacer
  ******. ****************  .

48. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggccgcctcgatggtcgcgttcagcgcca	Protospacer
 *. . **** **************** *.

49. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggccgcctcgatggtcgcgttcagcgcca	Protospacer
 *. . **** **************** *.

50. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggcggcctcgatggtcgcgttcagcgcca	Protospacer
 *.   **** **************** *.

51. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggcggcctcgatggtcgcgttcagcgcca	Protospacer
 *.   **** **************** *.

52. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggccgcctcgatggtcgcgttcagcgcca	Protospacer
 *. . **** **************** *.

53. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggcggcctcgatggtcgcgttcagcgcca	Protospacer
 *.   **** **************** *.

54. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggccacctcgatggtcgcgttcagcgcca	Protospacer
 *. . **** **************** *.

55. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggcggcctcgatggtcgcgttcagcgcca	Protospacer
 *.   **** **************** *.

56. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggcggcctcgatggtcgcgttcagcgcca	Protospacer
 *.   **** **************** *.

57. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggccgcctcgatggtcgcgttcagcgcca	Protospacer
 *. . **** **************** *.

58. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggccgcctcgatggtcgcgttcagcgcca	Protospacer
 *. . **** **************** *.

59. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgacgcctcgatggtggcgttcagcgaca	Protospacer
  .*. **** ***** ************.

60. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggccgcctcgatggtcgcgttcagcgcca	Protospacer
 *. . **** **************** *.

61. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggcggcctcgatggtcgcgttcagcgcca	Protospacer
 *.   **** **************** *.

62. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggccgcctcgatggtcgcgttcagcgcca	Protospacer
 *. . **** **************** *.

63. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 8, identity: 0.733

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gggccgcctcgatggtcgcgttcagcgcca	Protospacer
 *. . **** **************** *.

64. spacer 2.1|1352267|30|NZ_AP012547|CRISPRCasFinder,CRT matches to NC_018849 (Propionibacterium phage P105, complete genome) position: , mismatch: 9, identity: 0.7

cgccatcaacaacgtcctcgcgctcgtgca	CRISPR spacer
caacatcaacaacgtcctcgccctttccgg	Protospacer
*. ****************** **. .  .

65. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

66. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcaatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

67. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

68. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

69. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

70. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

71. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

72. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcaatggtagcgttcagcgaca	Protospacer
  . . **** ***** ************.

73. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

74. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

75. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

76. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

77. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

78. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

79. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
tcgcggcctcgatggtcgcgttcagcgcca	Protospacer
. .   **** **************** *.

80. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gtgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

81. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

82. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

83. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

84. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

85. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gagcggcctcgatggtcgcgttcagcgcca	Protospacer
 ..   **** **************** *.

86. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

87. spacer 2.12|1353005|30|NZ_AP012547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 9, identity: 0.7

cgaattcctccatggtcgcgttcagcgacg	CRISPR spacer
gcgccgcctcgatggtcgcgttcagcgcca	Protospacer
  . . **** **************** *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

119962 : 129842

Moumouvirus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070099317.1\|119962_122674_-	DNA topoisomerase III	A0A2P1ELA0	Moumouvirus	2.7e-26	24.4
WP_041096264.1\|122817_123306_-	DUF494 domain-containing protein	NA	NA	NA	NA
WP_041096266.1\|123302_124409_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	4.9e-30	35.5
WP_041096268.1\|124566_125583_-	LysM peptidoglycan-binding domain-containing protein	A0A0U4B6X0	Arthrobacter_phage	5.9e-06	48.0
WP_041101311.1\|125689_126193_+	peptide deformylase	E3SLL2	Synechococcus_phage	4.5e-15	42.6
WP_041096270.1\|126193_127111_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	7.4e-08	32.7
WP_052473000.1\|127118_129842_+	caspase family protein	A0A0R6PIZ1	Moraxella_phage	1.5e-24	30.9

DBSCAN-SWA_2

1553085 : 1560840

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041101951.1\|1553085_1555464_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	5.8e-73	34.9
WP_041098316.1\|1555469_1557446_-	type IIA DNA topoisomerase subunit B	G3M9Z3	Bacillus_virus	5.0e-86	35.6
WP_041098317.1\|1557468_1558347_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.0e-28	35.1
WP_041098318.1\|1558343_1558886_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	8.1e-47	49.7
WP_041101952.1\|1558882_1559767_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	4.3e-98	61.2
WP_041098319.1\|1559772_1560840_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.0e-89	50.8

DBSCAN-SWA_3

1757265 : 1771174

Bacillus_virus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041102008.1\|1757265_1760787_+	chromosome segregation protein SMC	G3MAB6	Bacillus_virus	2.4e-06	25.5
WP_041098596.1\|1760829_1762014_+	cell division protein ZipA C-terminal FtsZ-binding domain-containing protein	NA	NA	NA	NA
WP_041098598.1\|1762013_1764068_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	2.3e-134	42.4
WP_041098600.1\|1764064_1764931_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.9e-69	51.2
WP_041098602.1\|1764927_1765473_+	hypoxanthine-guanine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	7.7e-05	25.5
WP_041098604.1\|1765573_1765948_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	6.7e-16	56.2
WP_171817339.1\|1766132_1768472_-	EAL domain-containing protein	G3MA91	Bacillus_virus	2.6e-25	37.1
WP_041098605.1\|1768615_1768861_+	hypothetical protein	NA	NA	NA	NA
WP_041098606.1\|1768857_1770084_-	DUF1015 domain-containing protein	NA	NA	NA	NA
WP_041098607.1\|1770091_1771174_-	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	2.9e-80	45.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP012547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection