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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP014683 Burkholderiales bacterium GJ-E10 4 crisprs csa3,DEDDh,PD-DExK,DinG,WYL,Cas9_archaeal,cas2,cas1,cas9 0 6 6 0

Results visualization

1. NZ_AP014683
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014683_1 2243981-2244071 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014683_2 2470024-2470108 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014683_3 3236442-3236547 TypeII NA
1 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014683_4 3239549-3240590 TypeII NA
15 spacers
cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP014683_4 4.8|3240055|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3240055-3240084 30 NC_013855 Azospirillum sp. B510 plasmid pAB510a, complete sequence 386801-386830 5 0.833
NZ_AP014683_4 4.8|3240055|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3240055-3240084 30 NZ_CP049249 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence 782646-782675 6 0.8
NZ_AP014683_4 4.9|3240122|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3240122-3240151 30 MN693370 Marine virus AFVG_25M236, complete genome 28308-28337 6 0.8
NZ_AP014683_4 4.12|3240323|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3240323-3240352 30 NC_009620 Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence 1073655-1073684 6 0.8
NZ_AP014683_4 4.4|3239787|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3239787-3239816 30 NZ_CP029831 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence 661984-662013 7 0.767
NZ_AP014683_4 4.4|3239787|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3239787-3239816 30 NC_018532 Arthrobacter sp. Rue61a plasmid p232, complete sequence 188933-188962 8 0.733
NZ_AP014683_4 4.12|3240323|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3240323-3240352 30 NZ_CP019037 Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence 115721-115750 8 0.733
NZ_AP014683_4 4.14|3240457|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3240457-3240486 30 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4069313-4069342 8 0.733
NZ_AP014683_4 4.7|3239988|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3239988-3240017 30 MF158039 Shigella phage Sf12, complete genome 42147-42176 9 0.7
NZ_AP014683_4 4.8|3240055|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3240055-3240084 30 MN693601 Marine virus AFVG_25M543, complete genome 19362-19391 9 0.7
NZ_AP014683_4 4.12|3240323|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR 3240323-3240352 30 NZ_CP020371 Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence 40171-40200 10 0.667

1. spacer 4.8|3240055|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 5, identity: 0.833

--cgttagccgaaacacttgcagaaatgccgc	CRISPR spacer
gccgt--gccgcaacgcttgcagaaatgccgg	Protospacer
  ***  **** ***.*************** 

2. spacer 4.8|3240055|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

cgttagccgaaacacttgcagaaatgccgc-	CRISPR spacer
tttttgccgaaacacttgcagaaac-cggcg	Protospacer
. ** *******************. * ** 

3. spacer 4.9|3240122|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to MN693370 (Marine virus AFVG_25M236, complete genome) position: , mismatch: 6, identity: 0.8

ggcttgatcgtgatgtatggcttgatctgg	CRISPR spacer
gtcttgatcctgatgtattgcttgagcaga	Protospacer
* ******* ******** ****** * *.

4. spacer 4.12|3240323|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 6, identity: 0.8

atacccgcgcgttgccgtacacctgcgcat	CRISPR spacer
aaagccgcgtgttgccgttcacctgcgccc	Protospacer
* * *****.******** ********* .

5. spacer 4.4|3239787|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.767

tttgcca--tatctgaccgccgcattcgaagg	CRISPR spacer
--ggccgatgatctgaccgccgcattggaagc	Protospacer
   ***.   **************** **** 

6. spacer 4.4|3239787|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to NC_018532 (Arthrobacter sp. Rue61a plasmid p232, complete sequence) position: , mismatch: 8, identity: 0.733

tttgccatatctgaccgccgcattcgaagg	CRISPR spacer
cttgccatagcggaccgccgcattgccata	Protospacer
.******** * ************   * .

7. spacer 4.12|3240323|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

atacccgcgcgttgccgtacacctgcgcat	CRISPR spacer
cgtccagcgcgttgccgtacatctgcagct	Protospacer
   ** ***************.****.  *

8. spacer 4.14|3240457|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

tcgtcggcgtcaagtacgactgtgtgatcg	CRISPR spacer
acgtcggcgtcgagtacgacggtgcgcagc	Protospacer
 **********.******** ***.*    

9. spacer 4.7|3239988|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 9, identity: 0.7

tgtccatatacccaccacgacggccctgca	CRISPR spacer
ccgtgatatacccaccacgactgcccgtaa	Protospacer
.  . **************** ****   *

10. spacer 4.8|3240055|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to MN693601 (Marine virus AFVG_25M543, complete genome) position: , mismatch: 9, identity: 0.7

cgttagccgaaacacttgcagaaatgccgc	CRISPR spacer
gagtagccgaaaaacttgcagaattgagaa	Protospacer
 . ********* ********** **  . 

11. spacer 4.12|3240323|30|NZ_AP014683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 10, identity: 0.667

atacccgcgcgttgccgtacacctgcgcat	CRISPR spacer
cgctgcgcgcgttgccgcacacctgcctgg	Protospacer
   . ************.******** .. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 683001 : 732564 52 uncultured_virus(40.0%) transposase NA
DBSCAN-SWA_2 1095352 : 1145955 45 Cedratvirus(14.29%) integrase,tRNA,transposase,protease attL 1090896:1090912|attR 1149491:1149507
DBSCAN-SWA_3 1172167 : 1217033 42 Leptospira_phage(40.0%) protease,transposase,integrase attL 1171028:1171044|attR 1192424:1192440
DBSCAN-SWA_4 1592204 : 1659944 60 uncultured_Mediterranean_phage(16.67%) tRNA,transposase,protease NA
DBSCAN-SWA_5 1812328 : 1878600 79 Acidithiobacillus_phage(42.86%) head,transposase,portal,terminase,tail,capsid NA
DBSCAN-SWA_6 3193100 : 3242396 56 uncultured_virus(50.0%) transposase,integrase attL 3192939:3192957|attR 3194428:3194446
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage