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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP012543 Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-2, complete sequence 0 crisprs NA 0 0 0 0
NZ_AP012542 Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-1, complete sequence 0 crisprs NA 0 0 0 0
NZ_AP012541 Lactobacillus paracasei subsp. paracasei JCM 8130 4 crisprs DinG,WYL,DEDDh,cas3,csa3 0 0 14 0

Results visualization

1. NZ_AP012541
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP012541_1 569457-569565 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP012541_2 650403-650510 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP012541_3 1808375-1808445 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP012541_4 1820049-1820166 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12704 : 57570 45 Faecalibacterium_phage(30.0%) bacteriocin,protease,holin,transposase NA
DBSCAN-SWA_2 129273 : 178593 46 unidentified_phage(20.0%) transposase NA
DBSCAN-SWA_3 295799 : 400759 91 Lactobacillus_phage(20.0%) protease,holin,transposase NA
DBSCAN-SWA_4 440975 : 569331 111 Lactobacillus_phage(46.67%) integrase,transposase attL 476127:476186|attR 502280:503667
DBSCAN-SWA_5 623729 : 693123 58 unidentified_phage(18.18%) head,tail,transposase,capsid NA
DBSCAN-SWA_6 822777 : 902878 92 Lactobacillus_phage(86.27%) capsid,integrase,head,portal,protease,holin,tRNA,terminase,tail attL 812838:812856|attR 898861:898879
DBSCAN-SWA_7 950729 : 960072 8 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 1833934 : 1897521 68 Lactobacillus_phage(75.47%) capsid,head,integrase,portal,protease,holin,tRNA,terminase,transposase,tail attL 1833789:1833808|attR 1876615:1876634
DBSCAN-SWA_9 1917487 : 1995027 82 Lactobacillus_phage(46.67%) head,integrase,protease,holin,transposase,terminase,tail attL 1953377:1953395|attR 1993476:1993494
DBSCAN-SWA_10 2026742 : 2094958 52 Acidithiobacillus_phage(12.5%) protease,tRNA,transposase NA
DBSCAN-SWA_11 2361677 : 2489548 119 Staphylococcus_phage(15.38%) transposase,protease,tRNA,bacteriocin NA
DBSCAN-SWA_12 2494511 : 2519025 22 Escherichia_phage(50.0%) transposase NA
DBSCAN-SWA_13 2711422 : 2779502 59 Streptococcus_phage(20.0%) transposase,protease,holin,tRNA NA
DBSCAN-SWA_14 2805987 : 2871611 55 unidentified_phage(18.18%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage