CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP013294	Bacillus sp. OxB-1	5 crisprs	cas3,csa3,DEDDh,PrimPol,c2c9_V-U4,DinG	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP013294_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013294_1

175869-175961

Orphan

Consensus_repeat	Method
CATAACTCCAACCAACCGCTCATAAAATCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP013294_1

>merge|NZ_AP013294|1|175869-175961|CRISPRCasFinder
CATAACTCCACCCAACCGATCATAACTCCAACCAACCGCTCATAAAATCCACCCAACCGATCATAAGTCCAACCAACCGCTCATAACTCCACT

>NZ_AP013294|1|1|175869-175961|CRISPRCasFinder
CATAACTCCACCCAACCGATCATAACTCCAAC	CAACCGCTCATAAAATCCACCCAACCGAT
CATAAGTCCAACCAACCGCTCATAACTCCACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013294.1\|WP_041071057.1\|169640_170294_-\|pyrophosphatase-PpaX	unknown	unknown	gnl\|CDD\|237336
NZ_AP013294.1\|WP_041071093.1\|185286_185811_+\|tryptophan-transporter	unknown	unknown	gnl\|CDD\|293704
NZ_AP013294.1\|WP_041071084.1\|182740_182983_-\|IDEAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|235145
NZ_AP013294.1\|WP_041071099.1\|186659_187241_+\|HTH-type-transcriptional-regulator-Hpr	unknown	unknown	gnl\|CDD\|237501
NZ_AP013294.1\|WP_041071081.1\|180251_182237_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_AP013294.1\|WP_041071087.1\|183125_184331_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377581
NZ_AP013294.1\|WP_041071090.1\|184314_185064_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_AP013294.1\|WP_041071050.1\|166443_167397_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_AP013294.1\|WP_041071069.1\|175083_175443_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_AP013294.1\|WP_041071078.1\|177371_180245_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_AP013294.1\|WP_041071075.1\|176106_177288_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|226123
NZ_AP013294.1\|WP_041071060.1\|170286_171228_-\|nucleoside-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|369457
NZ_AP013294.1\|WP_041071063.1\|172054_172999_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_AP013294.1\|WP_041076087.1\|171241_172051_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_AP013294.1\|WP_041071066.1\|173441_175043_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_AP013294.1\|WP_041071055.1\|169113_169644_-\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_AP013294.1\|WP_041071053.1\|167495_169019_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_AP013294.1\|WP_041071101.1\|187441_187627_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041071096.1\|185943_186306_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|227313
NZ_AP013294.1\|WP_041071072.1\|175432_175780_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP013294.1\|WP_041071057.1\|169640_170294_-\|pyrophosphatase-PpaX	gnl\|CDD\|237336	PRK13288, PRK13288, pyrophosphatase PpaX; Provisional.	2.96557e-106
NZ_AP013294.1\|WP_041071093.1\|185286_185811_+\|tryptophan-transporter	gnl\|CDD\|293704	pfam17099, TrpP, Tryptophan transporter TrpP. TrpP is a bacterial transmembrane protein that is probably involved in tryptophan uptake. Its expression is regulated by tryptophan-activated RNA-binding regulatory protein (TRAP).	2.15277e-34
NZ_AP013294.1\|WP_041071084.1\|182740_182983_-\|IDEAL-domain-containing-protein	gnl\|CDD\|235145	PRK03636, PRK03636, hypothetical protein; Provisional.	7.83489e-06
NZ_AP013294.1\|WP_041071099.1\|186659_187241_+\|HTH-type-transcriptional-regulator-Hpr	gnl\|CDD\|237501	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr.	5.97327e-107
NZ_AP013294.1\|WP_041071081.1\|180251_182237_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_AP013294.1\|WP_041071087.1\|183125_184331_-\|ABC-transporter-permease	gnl\|CDD\|377581	pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters.	1.07511e-88
NZ_AP013294.1\|WP_041071090.1\|184314_185064_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.77557e-85
NZ_AP013294.1\|WP_041071078.1\|177371_180245_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_AP013294.1\|WP_041071069.1\|175083_175443_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	2.88912e-49
NZ_AP013294.1\|WP_041071050.1\|166443_167397_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	1.31083e-153
NZ_AP013294.1\|WP_041071075.1\|176106_177288_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|226123	COG3595, COG3595, Uncharacterized conserved protein [Function unknown].	4.20855e-15
NZ_AP013294.1\|WP_041071060.1\|170286_171228_-\|nucleoside-recognition-domain-containing-protein	gnl\|CDD\|369457	pfam07670, Gate, Nucleoside recognition. This region in the nucleoside transporter proteins are responsible for determining nucleoside specificity in the human CNT1 and CNT2 proteins. In the FeoB proteins, which are believed to be Fe2+ transporters, it includes the membrane pore region, so the function of this region is likely to be more general than just nucleoside specificity. This family may represent the pore and gate, with a wide potential range of specificity. Hence its name 'Gate'.	2.88445e-05
NZ_AP013294.1\|WP_041071063.1\|172054_172999_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	6.8131e-158
NZ_AP013294.1\|WP_041071066.1\|173441_175043_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	4.06636e-117
NZ_AP013294.1\|WP_041076087.1\|171241_172051_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	8.82356e-122
NZ_AP013294.1\|WP_041071053.1\|167495_169019_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.91859e-13
NZ_AP013294.1\|WP_041071096.1\|185943_186306_+\|YtxH-domain-containing-protein	gnl\|CDD\|227313	COG4980, GvpP, Gas vesicle protein [General function prediction only].	7.07823e-13
NZ_AP013294.1\|WP_041071055.1\|169113_169644_-\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	1.53112e-31

>NZ_AP013294.1|WP_041071072.1|175432_175780_-|hypothetical-protein
METDTPLQEIQGSGKEEEWIRLIDEWRESGQSIKDWVHEKEDITYKQFLYWRKQLFPDEIEKRPVEMKETVWSSLNVEIPSATLDVFVHDCRIEVTTGFDQELFREIVEVLRNAN
>NZ_AP013294.1|WP_041071069.1|175083_175443_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MRINLDGIHGIYLAHGTTDMRLSIDGLAATVQETFQLDPCSSNLFLFCSRGRDRVKILHWDHNGFWLYYRRLENGRFQWPDGPEDTATVITPRQLRWILDGLTLEEGKVFPKVTAKKVV
>NZ_AP013294.1|WP_041071066.1|173441_175043_-|IS66-family-transposase
MKKLQPPSSHTTEHENRILELEEKVEKLETLVNWYEEKLRLKIHQKFGASSEKQPVGQLELNLFNEAESAAGLKEAKAEVASPPEDSSPEGKRRSRKSLAPDIPTETILYSLPPEGRACSDCGNEVHVMKTESRREIKIIPAQVKVIQHEREIYACRTCERENIRTPIIAAPMPEPVIPKSMASPSAVAYVLTQKYMVGLPLYRLEEQLRQTGVHLSRQTLSNWIIQTGERWIQPLYELMAEFLLEQEVLHADETTVQVLREDGRAASTKSYMWLYCTGRSGPPCVLFDYQTTRAAKHPKRVLKGFKGKLHTDGYPGYNDLPGVTLSGCWAHMRRKFVEAQKAVIRPKGGGKTFSEEAIDRIGAIYGIEKEITKMEKEAGIQNPEIRRAIREEKILPLAEAFFAWLKKERPTIVPKSGLGTAVTYALNQEKKLMVPFSDGRLDIDNNHAERMIKPFVIGRKNWLFSTTPRGAKVSAMAYSLIVTAKENGLDVFSYLDHLFETLPNINMDDKERLQNLLPWSEKLPVHCRLPKE
>NZ_AP013294.1|WP_041071063.1|172054_172999_-|HPr-kinase/phosphorylase
MSSITVKDVVDRFGLTVSVAEENIYKRVTTSDISRPGLEMAGFFDFYNAERIQVLGKTELYFFASLSDEERRERMNGLCSPETPAFVVTHGVEVPEELRVAAGRVGIPVLQTDTPTTKFAGMLTNYLEGRLAPMIALHGVLVDVYGVGILITGKSGVGKSETALELVKRGHRLVADDLVEIREVSKNVLIGNAPKLLEHMLEIRGVGIIDMMTLFGAGSVRIDKRILIVIDLEIWDPEKTYDRLGIEDEKMKIMDSEVIKMTVPVRPGRNLSVIIEVAAMNHRMKRLGVNAAEQFSERLDAAIGHQSDLEEGNE
>NZ_AP013294.1|WP_041076087.1|171241_172051_-|prolipoprotein-diacylglyceryl-transferase
MFTLLEINPVAFHLGPFPVRWYGILIVSGIILAYLVVQREMVKRGMHKDFLTDLLIWAVPISILCARIYYVVFSWDYYKDHPSQIIEIWEGGIAIHGALIGAFLTTYFYTKKRGVSFWKVVDIAAPGLLIGQIIGRWGNFMNQEAYGGPVSEKFLETTIIPDWIMNQMIVEGVTHHPTFLYESMWNVVGLIILILLRRVNLKRGEMFLFYLVWYSAGRFFIEGMRTDSLYVVGELRAAQLVSVIAIVVALILFIIRRYVKKVDVRYKDQ
>NZ_AP013294.1|WP_041071060.1|170286_171228_-|nucleoside-recognition-domain-containing-protein
METVKKGLKVGLQTTWSLGKIIFPITILVVILQHTPVLPWVIELLSPFMGLFGLSGEAAIPLVLGNALNLYAGIAGILSLELTVKEVFIIAVMLSFAHNIFIETGVALKVGVKLWVVLVVRYGLAALSGIVINLVWRGGGETAKYGIMPKAETLPEGWMEIIVLGVQKASFGVLQLALIVIPLMVIVQYLKDRNHLQKFSEKLAPFTKVIGVQPNASMTLVAGLVIGLAYGAGIMIQAVQEDGVSKKDATLAFIFLVACHAVIEDTLLFVPLGIPVLPLLVIRLITAFVLTIAVAAVWKRNEQQKKEVPVTDG
>NZ_AP013294.1|WP_041071057.1|169640_170294_-|pyrophosphatase-PpaX
MVKPITTLLFDFDGTLLDTNELIIGSFQHVLNGRFPGKFTREDILHFLGPPLIDSFNTIDPENAEAMVTEYREWNHLMHDELAREFDGVSESLKQLKTLGLKMAIVSTKRNETIMRGLRLLDAEGIFDVIVGLDDVTRPKPDPEPILLALSKVGSTIEEALMIGDNSHDIEGGKNAGVRTAGVSWSIKGEAFLQSLNPDYMLQHLSDLQDIVQGEQA
>NZ_AP013294.1|WP_041071055.1|169113_169644_-|acyltransferase
MRRTERHPAKNGANSLWHIYKTVPFLKVAKNFIIIQLARYTPFMSVKNFLYRTFLRMKVGRKTSFALMVFPDVMFPERIRVGDNSIIGFNTTILAHEYLIEEYRIGDVVIGDNVLIGANTTILPGVEIGDGAIVSAASLVNSDIPPGAFAGGNPARVIFTKEEMEKRQRDRFPEAQ
>NZ_AP013294.1|WP_041071053.1|167495_169019_-|tetratricopeptide-repeat-protein
MDKKRKIHDKKVISFIPDGEFYYHKAIQAMQRDRFDDARKYLMRATELSPEDPSILMQYGVLLMEEGRFDEAHEHLMKAHVLDPSEEEVIFYLAEVHAHLGLLRDAKKYAEQYISLLPDGVFADEAMEIIDFAEQEEAFYDAEEMPDGEVYFLQEKARRLMEGGDFKAAVHHLESIIVDYPDFWAAYNNLALAYFYIGETEKASSLLHEVLERNKGNIHALCNLAVFYYYEKKEEELDSLLELLLKIKPYQIEHRYKLGATFALIGRHKEAYHWLRSLQKRGFDGDAGYYFWLSHSAYFSGHETVAKEAYAKLIEIDPTKAGYEPWRDVQSDIPPDSYEQDRGFLLGKIQNGYRSERMFGFYLLGKSGHKQEIISHPSYINVSELSEMERLFLATSLDYELVPVDELDESFLRALETTDLLYEEYRPLNKQGTHLFQMWFALCESALNKSYPFANPAALAAAADYMFQSSRYADVTKKALAQKYGISVPTLTKYVGQLIEFLPIFDS
>NZ_AP013294.1|WP_041071050.1|166443_167397_-|thioredoxin-disulfide-reductase
MATEKTYDVIIIGAGPAGMTAAVYTSRANLSTLMLERGMPGGQMANTEDIENYPGFEHILGPDLSTKMFEHAKKFGAEYAYGDVTEVIDGDVYKTVKVGDTEYKAHAIIITTGAEYRKMGIPGESELTGRGVSYCAVCDGAFFRNKEIVVIGGGDSAVEEGAYLTRFADKVTIIHRRDELRAQKILQDRAFANEKIDFIWNTTVKKVNEKDGKIGSVTLVSTVDGSEREFETDGMFVYIGMDPLTAPFSDLGILDENGYIETNEIMETAVPGIYAAGDVREKLLRQVVTATGDGSIAAQAVQKYVEEVKEKTASEAK
>NZ_AP013294.1|WP_041071075.1|176106_177288_-|DUF4097-family-beta-strand-repeat-protein
MQNERKRILAMLENGTITTDEALTLLEKLGPSQHRTKPDEDQKDGRAAHTEEPSQSEEPSQSEERKSEGSRRGPHTADDFLEDLKRDFTNVSDRFMQFMQTAVQKVKSFDFDVPFGNAVTFTHVMNMPAAGIKEVVFDIDNGKVTVTRSETDEVQAVFHVKTYNNESEEAAKRDFLEKLIFLNDHGKLRIMSDLKMTQVNVELQVPAAEYDAVTAKLLNGSFSLQDVNAERLRIKTGNGKVEVSGLEFQEAELETANGSIHLSGASGRKLEAETLNGRVYIDGALKDVEAQSLNGHVVVTTTDSEAERIDVKSMSGSIEIYIPSNVALSGEVTSNMGRLDLQLDDIDRIAEQEQLFHRSIRFRKESMDTSRPLHITGEAKTGSVLVCYNASHE
>NZ_AP013294.1|WP_041071078.1|177371_180245_-|excinuclease-ABC-subunit-UvrA
MKNTEIVIQGARAHNLKNIDVRIPRDRLVVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGKPICPIHGTEISSQTVEQMVDRLMELPERTRIQVLAPVVSGRKGTHAKLIEDIKKQGYVRIRVNGETMDLDDNIDLNKNKKHSIEVVIDRIVIKADIEARLSDSLESALRLAEGTVLVDVIDGEEILFSEHHACPLCGFSIGELEPRMFSFNSPFGACPDCDGLGSKLEVDAELVIPDPSRSLKDHAIAPWEPTSSQYYPELLRTVADHFGIPMDAPVSELPEEDLHKILYGSKDEKIRFRYTNEFGGTRDNNIYFEGVLANVARRFKETSSDYIREQMEKYMAQRPCPTCDGYRLKEETLAVKVNSVHIGQVTELSIMEADHFFKELQLSEKDAQIAKLILREIDERLGFLINVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLIGTLQSMRDIGNTLIVVEHDEDTMMAADYLIDIGPGAGVSGGQIVSAGTPEEVMADPASLTGQYLSGRMFIPLPLERRESDGRKVVIKGASENNLKGVDAEFPLGQFIAVTGVSGSGKSTLVNEVLHKVLAQKLNRSKQKPGQYESITGLEELEKVIDIDQSPIGRTPRSNPATYTGVFDDVRDVYAATNEAKVRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIADVLAMTVEDALQFFENIPKISRKLQTIVDVGLGYVQLGQPATTLSGGEAQRVKLASELHKRSNGKSFYILDEPTTGLHVHDIAKLLTVLQRLVDTGNTVLVIEHNLDVIKTVDHIIDLGPEGGDKGGQIIATGTPEMVAEVEQSYTGRYLRPILERDRERMDNIMEEAEKAAE
>NZ_AP013294.1|WP_041071081.1|180251_182237_-|excinuclease-ABC-subunit-UvrB
MKNYQFDLQAPYSPSGDQPAAIASLVEGLAKGKKHQTLLGATGTGKTFTISNVVKEINRPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSFYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRHSATSALFERNDVLIVASVSCIYGLGSPEEYRNHLISLRPGMEIERNVLLRRLVDNLYERNDVNFTRGTFRVRGDVVEVLPASQDEHCLRIEFFGDEIERIREVDALTGEILGEREHVAIFPASHFVTGEAKMAKAIENIEIELEEQLKILREQDKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGATPYTLLDYFPDDFLIVADESHVTLPQIRGMYNGDQARKKVLVDHGFRLPSALDNRPLMFEEFERYIHRAIYVSATPGPYEIEHTPEMVEQIIRPTGLLDPIIEVRPIEGQIDDLLDEIQQRVERNERVLITTLTKKMSEDLTDYLKDVGVKVNYLHSEIKTLERIEIIRELRLGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNSNGHVIMYADRMTDSMTKAIEETKRRREIQMAYNEKHGIIPKTIQKEVRDVIRATQAADEAVSYIDKVTEGKKLTKEEKTALLATLESEMKEAAKALDFERAAELRDTILELKAER
>NZ_AP013294.1|WP_041071084.1|182740_182983_-|IDEAL-domain-containing-protein
MENNYSYAEFLKAVGKNSSSLQAEKLLNEIYMDLFLKHIHREQTKKRLVQLIDDALDRRDEKAFLLYTESLAKLEDQENE
>NZ_AP013294.1|WP_041071087.1|183125_184331_-|ABC-transporter-permease
MNGLREIWSGRFIHYVTELQKYLKYVFTGHLAIVLMFSIGAGGYAYSEWLKEVPADFPAVLITSIILAAVLAYSPAVTLLKPADVVFFLPFEKKMGRYIGRALRWTTFSQLALPLVLYIVALPLLSATETGSKVILLWLAAFIVVIKWGFVETEYFFRHTFSGGGIWKDRLIRFVLAALYIYCWLGPSPVVAIGFLALIGFYGAYWRKRKSAKPFPYEHFIELEQNRMMRFYRFANYFTDVPHLQGSVSRRGWLGFLMGRPDFHNPAPQSYLLVRTFIRTDDIFWLWVRLTALSIVGVVLIPFPFVSFIYVGALAFASAVQLIHALRAGDDFRMDRLFPEKEDSRPSAIRKLVRLVQWIQILLVGIAAFMTYGVSMNPLLILAVMLIISEATIRLTQDKKE
>NZ_AP013294.1|WP_041071090.1|184314_185064_-|ABC-transporter-ATP-binding-protein
MAILELNDVTGGYTRKPVLHDLSFEIEKGELVGLIGLNGAGKSTTIKHIIGLMDPHSGEIKVNGVTFQENPEMYRKSFTYIPETPILYDELTLQEHLELTATAYGLDEDLFKARSEKLLKEFRMEKRLKWFPAHFSKGMRQKVMIMCAFLVEPSLYIIDEPFVGLDPLGIRSLLEQMTEMKEQGASVLMSTHVLSTAERYCDRIILLHEGRVRAAGTMDDLRKAFGQPGATLDDLYIAMTEENHDERLA
>NZ_AP013294.1|WP_041071093.1|185286_185811_+|tryptophan-transporter
MNTKNLVFMALLVAVGAALYLVIPGYNGGMKPDFMLTMMFIGILLFPQARNVFLLGGTTGVISGIFSSFPGGFVPNVIDKLVTAFVIYAIIVAFKSIRNNLVGSTVLAGIGTILSGTIFLSIAIFILGVDLPFSALFLTVVLPAVAMNGVAFFIIYPIVTTLLKRTSMKTAVTN
>NZ_AP013294.1|WP_041071096.1|185943_186306_+|YtxH-domain-containing-protein
MKTSTFLIGLATGAVGAAITVLFSTPQSGSELRSSVKNASTDMKEKLSDLKEKLENLKDSITHLKKEAKEVIPETIEEMKEVVSDWQQAAAPHRIRMEQEIADIQAAIEDLERSIAAQQK
>NZ_AP013294.1|WP_041071099.1|186659_187241_+|HTH-type-transcriptional-regulator-Hpr
MTQNSSPQMEAMIFSQRVAQMSKALWKAVEKDWQAWIKPYDLNINEHHILWIAFHLDGATISDVAKFGVMHVSTAFNFSKKLEQRGYLQFYKKDDDRRNTYISVTEEGKELLLEMNENYYSSSHGILEGSMPIKNLYGKFPEFLEVMSVIKNIYGDDFMEIFERGFQNIGDTFVAKQEEKEPVPAEAGTPVEK
>NZ_AP013294.1|WP_041071101.1|187441_187627_+|hypothetical-protein
MILIATVMFSLFYLFQINKMTYALCESREIPEEKQPKIFKTVNILVTILILSFYVEVFFRA

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Crispr_ID: NZ_AP013294_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013294_2

377196-377356

Orphan

Consensus_repeat	Method
ACGGGGGCTTATGAGCGCAAGGCTGGGATTATGAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP013294_2

>merge|NZ_AP013294|2|377196-377356|CRISPRCasFinder
ATGTGGGATTATGAGCGTGAGGCTGGGCTTATGAGCGCGGCACGGGGGCTTATGAGCGCAAGGCTGGGATTATGAGCGTGAGACGGAGACTTATGGGCGCGAGGCACGGGCTTATGAGCGTGAGACGGGGGCTTATGAGCGCAAGGCTGGGGTTATGAGCG

>NZ_AP013294|2|2|377196-377356|CRISPRCasFinder
ATGTGGGATTATGAGCGTGAGGCTGGGCTTATGAGCG	CGGCACGGGGGCTTATGAGCGCAAGGCTGGGATTATGAGCGTGAGACGGAGACTTATGGGCGCGAGGCACGGGCTTATGAGCGTGAG
ACGGGGGCTTATGAGCGCAAGGCTGGGGTTATGAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013294.1\|WP_052483829.1\|379296_379923_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274288
NZ_AP013294.1\|WP_041071514.1\|385060_386488_-\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|224062
NZ_AP013294.1\|WP_041071502.1\|377555_378653_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NZ_AP013294.1\|WP_041071490.1\|372777_373629_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381383
NZ_AP013294.1\|WP_041071496.1\|375087_376281_+\|cystathionine-beta-lyase	unknown	unknown	gnl\|CDD\|236146
NZ_AP013294.1\|WP_041071505.1\|378989_379250_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041071493.1\|373969_375091_+\|methionine-biosynthesis-PLP-dependent-protein	unknown	unknown	gnl\|CDD\|181320
NZ_AP013294.1\|WP_041071518.1\|386507_387224_-\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NZ_AP013294.1\|WP_041071511.1\|383527_384289_+\|collagen-like-protein	unknown	unknown	gnl\|CDD\|189968
NZ_AP013294.1\|WP_041071487.1\|370795_372268_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_AP013294.1\|WP_041076159.1\|384341_385061_-\|lactate-utilization-protein-C	unknown	unknown	gnl\|CDD\|224473
NZ_AP013294.1\|WP_041071481.1\|368848_369802_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_AP013294.1\|WP_052483830.1\|388034_388907_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_AP013294.1\|WP_158333630.1\|388954_389110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041071508.1\|382918_383335_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041071484.1\|369955_370783_-\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NZ_AP013294.1\|WP_041071475.1\|365451_367656_-\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_AP013294.1\|WP_041071499.1\|376299_377049_+\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|224790
NZ_AP013294.1\|WP_041071478.1\|367652_368852_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_AP013294.1\|WP_041071472.1\|363782_365189_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614

Protein	Function_ID	Function_description	E-value
NZ_AP013294.1\|WP_052483829.1\|379296_379923_-\|hypothetical-protein	gnl\|CDD\|274288	TIGR02765, deoxyribodipyrimidine_photolyase, cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes. [Cellular processes, Adaptations to atypical conditions].	0.00865376
NZ_AP013294.1\|WP_041071514.1\|385060_386488_-\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	0
NZ_AP013294.1\|WP_041071502.1\|377555_378653_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NZ_AP013294.1\|WP_041071490.1\|372777_373629_-\|aldo/keto-reductase	gnl\|CDD\|381383	cd19157, AKR_AKR5G1-3, AKR5G family of aldo-keto reductase (AKR). Bacillus subtilis glyoxal reductase (GR), uncharacterized oxidoreductase YtbE, and Bacillus aryabhattai aldo-keto reductase are founding members of aldo-keto reductase family 5 member G1-3 (AKR5G1-3), respectively. GR (YvgN, EC 1.1.1.283), also called methylglyoxal reductase, reduces glyoxal and methylglyoxal (2-oxopropanal). It is not involved in vitamin B6 biosynthesis.	1.9522e-176
NZ_AP013294.1\|WP_041071496.1\|375087_376281_+\|cystathionine-beta-lyase	gnl\|CDD\|236146	PRK08064, PRK08064, cystathionine beta-lyase MetC.	0
NZ_AP013294.1\|WP_041071493.1\|373969_375091_+\|methionine-biosynthesis-PLP-dependent-protein	gnl\|CDD\|181320	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein.	0
NZ_AP013294.1\|WP_041071518.1\|386507_387224_-\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	6.59649e-61
NZ_AP013294.1\|WP_041071511.1\|383527_384289_+\|collagen-like-protein	gnl\|CDD\|189968	pfam01391, Collagen, Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.	8.16548e-09
NZ_AP013294.1\|WP_041071487.1\|370795_372268_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_AP013294.1\|WP_041076159.1\|384341_385061_-\|lactate-utilization-protein-C	gnl\|CDD\|224473	COG1556, COG1556, Uncharacterized conserved protein [Function unknown].	3.15515e-68
NZ_AP013294.1\|WP_041071481.1\|368848_369802_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	8.04305e-106
NZ_AP013294.1\|WP_052483830.1\|388034_388907_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.64785e-13
NZ_AP013294.1\|WP_041071484.1\|369955_370783_-\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	0
NZ_AP013294.1\|WP_041071475.1\|365451_367656_-\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	6.41571e-26
NZ_AP013294.1\|WP_041071499.1\|376299_377049_+\|cyclase-family-protein	gnl\|CDD\|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	7.89906e-57
NZ_AP013294.1\|WP_041071478.1\|367652_368852_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.25251e-27
NZ_AP013294.1\|WP_041071472.1\|363782_365189_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0

>NZ_AP013294.1|WP_041071499.1|376299_377049_+|cyclase-family-protein
MTKTLTNEVLEAIQLVKSKEWVDLTHTFGKDSPHFSAFDAAETVTLFDHDDGFFAQQFTFAGQYGTHIDAPIHFVRDTRYLEELELKELVLPLVVIDKSKEAAENHDFTLAVQDILDFEAEHGEIEDGTFVALRTDWSKRWPDKEAFDNKDADGNNRIPGWGLEALKFLFEERKVKAIGHETYDTDSAIDFQKNNALLGEYYVLEQDTYQIELLTNLDKLPAKGAVIFNIVPKPEKASGFPVRSFAILP
>NZ_AP013294.1|WP_041071496.1|375087_376281_+|cystathionine-beta-lyase
MSYQRLETKFIHASTSGDFEQKTGAVNVPIYLSSTFHQEDFDSFGPYDYSRSGNPTRDALEKAIAELEGGARGLAFASGIAAISSAFMLLKSGDHIVVTEDVYGGTFRFITQVLTKFGIEHTFVDLADLETTAAAIRPNTKVIYMETPSNPRLGITDIAAIVELAKANGCLTFLDNTFMTPLYQRPIELGVDIVLHSATKFLSGHSDIIAGLAVTKDEELGNQLAFIQNSFGAILGAQDSFSLIQGIKTLGARLAQSSASAKRIADYLNEHPLVEHVYYPGLADHPGHAIHAAQSSDAGAVLSFRLPNRETAKAFVDHIRIPVFAVSLGGVESILSYPAQMSHAAMPKEERDKRGITDGLLRFSVGLEHVDDLIADFEQALQAAAEVNKDFAVVEIK
>NZ_AP013294.1|WP_041071493.1|373969_375091_+|methionine-biosynthesis-PLP-dependent-protein
MTKRSLATTLVQLGNHSDPKTGAINPPIYLSTAYKHDGIGKTTGYDYTRTKNPTRSILEDGIAKLESGDAGFACSSGMAAIQLVLSLFRSGDELIVPEDIYGGTYRLLDYYSDVYSIETTYTDFTNVETVEELITENTRALFIETPTNPLMQEIDLAAYAQLAKQHGLLLIVDNTFLTPYFQRPIEYGADIVLHSATKYIGGHNDVLAGLVVAKGEELCERLGKNHNAIGAVLSPSDSWLIIRGLKTLHLRMKQHDANAKAIVEYLKSEPKVTDVLYAGQGGMLSFRLKESAWVGTFLESLQLITFAESLGGVESFITYPTTQTHADIPEEERMRRGVCDRLLRFSVGVEEADDLIDDLKQVFAKLESGGPQR
>NZ_AP013294.1|WP_041071490.1|372777_373629_-|aldo/keto-reductase
MVAKHLQDCTTLSNGVQMPWMGLGVYQSKGEEVVDAVKWALDAGYRSIDTAAIYRNEEEVGRALKESSVPREEIFVTTKVWNSDQGFEAALEAFDDSLKRLDLEYVDLYLIHWPEPGKYKETWKALEKLYKDGRARAIGVCNFNIHHLEDLMADAEIMPMVNQVEYHPCLTQVELLAFCKENGIQMEAWSPLMRGQLLDNPVLVEIAEKYGKTVPQVMLRWDLQNGVVTIPKSVKQSRIIDNSNVFDFELTVEEVEAIGTLNENKRVGPDPDNFDFTGVTVKR
>NZ_AP013294.1|WP_041071487.1|370795_372268_-|nicotinate-phosphoribosyltransferase
MSSNYKDDSWTLHTDLYQINMAESYWADGIHNRKAVFELFFRKLPFGNGYAVFAGLERILDYLRELRFTESDLAYLREELGYREDFIAYLKELRFTGDIYSMQEGEIVFANEPIIRVEAPLIQAQLIESAILNIVNYQTLIATKASRIKQVVKDEVVMEFGTRRAHEMDAAIWGARATYIGGIEATSNVLAGKRFEIPVAGTHAHSMVQAYKSEYEAFHSYAKRHKDCVFLVDTYNTLKIGVPTAIQVAKELGDQINFQGIRLDSGDIAYLSKETRRMLDEAGFPDAKIIVSNDLDEYTILNLKAQGARVDVWGIGTKLITAYDQPALGAVYKIVSIENEEGEMEDTIKISSSTEKVTTPGRKKLYRIIDRENGMAEGDYIAMYDEDPASEKRIKMFHPIHTFISKFVTNFEAKDLHVKVVDQGEIVYENPPLREMREYAKENLALLWDEYKRSLNPEEYPVDLSQKCWDNKMRNIQEVQEMVEEYIENK
>NZ_AP013294.1|WP_041071484.1|369955_370783_-|ammonia-dependent-NAD(+)-synthetase
MTTLQEKIIAELKMKPVIDPKEEIRKSIGFLKAYLQKNPFLHGYVLGISGGQDSTLVGKLAQMAVDELNDENGDETYKFIAIRLPYGTQFDEDDAQDVLEYIRPSLTYTINIKEAVDASERALVEAGITLSDYAKGNEKARERMKVQYSVAAMHNCVVLGTDHAAEAITGFYTKFGDGAADLMPIFRLNKRQGKQLLRELNCPEHLYTKVPTADLEDEKPAIPDEVALGVTYDDIDDYLEGKQIADAARQTIENHFLRSQHKRHMPITIFDDFWK
>NZ_AP013294.1|WP_041071481.1|368848_369802_-|MoxR-family-ATPase
MTNREMIGSILDNIEKVMIGKREIAELSLTALLSGGHVLLEDVPGVGKTMLVKALAKSIGADFKRIQFTPDLLPSDVLGVSIYNPKEMQFEFRPGPILGNIVLADEINRTSPKTQSALLESMEESSLTVDGETIRIPQPFFVMATQNPIEYEGTYPLPEAQLDRFLFKLKMGYPSKSEEVEVLRRAVEEVAVEKLEPVITLADLRDLQQAVKNVTVDDTVKSYIVDCATATREDADVYLGVSPRGSLALMRGCQAYALGKGRTYVTPDDVQYLAPFVFGHRVIVKPEARFQGVSPDTLIRRILGNVYVPVDRSRFTR
>NZ_AP013294.1|WP_041071478.1|367652_368852_-|DUF58-domain-containing-protein
MKAARLRIGLLGRLLFVVTLLATSFVFAMFQGGIVSWTIFYILLPFVGYSILLFFYPISSIKVERELMPPRVHRGGSLMVVVRLKRKFRFPLLYVVAAEMGDDSRLHASAGSRMKQIFLLGISKEVEWTYTIDRMPRGEHKFRGIEIELSDFFGWIKKTALLHLPETILVYPKITDFQYNPRDSRSETGSLDTSQNSKDLTLVTGVRDYQAGDRMAWIHWKSFAKTQNLMTKEFDGGRAKHLFLVLDGRYSDVFEGQVELAASLLRETSRRQSGLAFAILGSNPLLLPSIQSEDQLHQAFVQLAKLQPSNEEGLPVVELAALPSSENVVIITGNPDEILFESLLSHFQQARSIVCFVIVDQEGLSGKREGAIQLARSKGVKVHTLYRKPSSDTFNEVAR
>NZ_AP013294.1|WP_041071475.1|365451_367656_-|transglutaminase-domain-containing-protein
MRNERQIDKWMLILLYVLAFVLLWEWLLPVMELTSSGNMPLFLLFVALFFLMALFNLKWWIAIPVKITYILWAVHYIFFHELLFSKQALVLLRDDFIANLVVLLKGQWEGISNPFRTLLFFALLWMTAYLIRYWIEVKKSILLFYVMTVVFIAFIDTFSPYSAEQSIFRIMMSGCLLLGLLTISRLVQKQRKPLRLRTYLFISLPLLLVVSMSGLLAHYLPKGEPVWPDPVPFVKAVVQGVEESGNIAGVMKSGYDPDDSRLGGSFVQDDTLIFEAETAKRQYWKIETKNTYTSKGWEQVSPSSEQTGYRMGDELRTVSEEGELRWAELVFSKPFPFVIYPYGLHKVHADEAYQLILTNATGKYATVAANANQTSFSAVQLPVYAMEFEEPKYSLKTLRATTMNDYATVKENLNPYLQLPSQLPPRVRELAQEIAGESQSVYEKAKAIERYFARDGFVYAQDDIAVPRTGQDYVDQFLFETKRGYCDNFSTSMVVMLRSIDIPARWVKGFAPGEETRNAEGDKIFRVTNNEAHSWVEAYMPGVGWMPFEPTIGFTNTADIEYDLDLNVGNAETPEQQEQRPKEVKKNEPKTAAKKEGGFTSFIADLDKWFQTNTMKTVFFGLALLLVVSMAYVQRAKWLPALLTRWRRSESGDWEMFRKQYGSLLKQLDRVGLKRRHGMTLADYAKEVDRHFGGTSMSLLTVAYEKGFYGGETVDHDWMNLQEMWEDLIKKTVG
>NZ_AP013294.1|WP_041071472.1|363782_365189_-|glutamine-hydrolyzing-GMP-synthase
MSTAPLLVEQEKIVVLDLGSNYNQLITRTIRNFGVYSELHAHTVTAEEIKKMNAVGIILSGGPASAEDPEALTIDPEIFSAGIPILGINYGMRLIAKQVGVDTPSSPQDSINAIGGDANKTYGIEFQPEAGGSVNGLEFLRQFTLTICEAKGDWTMERFIEIEVEKIRATVGDKKVLCALSGGVDSSVVAALIHRAIGDQLTCMFVDHGLLRKGEAESVVDTFSNQFHMNFIKIDASERFLDKLKGITDPETKRKTIGNEFIYVFDDEAAKLDGIDYLAQGTIYADIIESGTATKEVIKSHHNVGGLPEDMEFELIEPLKALFKDEVRAVGAELGLPSDIVHRQPFPGPGLGVRVLGEVTKEKLDIVREADWILRDEIAKAGLDREIWQYFAVLPDIRSVGVRNEKRSYDYAVGIRAVHSIDGMTADWARIPWDILEKISTRITAEVEHVNRVVYDITAKPPGTIEWE
>NZ_AP013294.1|WP_041071502.1|377555_378653_+|3-phosphoserine/phosphohydroxythreonine-transaminase
MSQTNQRAYNFNAGPSALPLAVLEKAQEELVNFRGTGMSVMELSHRSAAFEEVHNAAIDRLKSLFAIPENYEVLFLQGGASLQFSMIPMNFLPEGQQAGYVMTGSWSEKAYKEAELLGRPYELASTKDNKYRSIPGLDELQFNSTDAYVHVTSNNTIYGTQWTEFPETGDAPLIADMSSDIMSRPVNVSQFGMIYAGAQKNLGPSGVTVVIIRKDLLEKAKSELPTMLKYSTHVKNNSLYNTPPTFGIYMLGEVLNWIEEKGGLEAIAKQNEEKAKLIYDAIDDSNGFYTGHAAPDSRSLMNITFNLANEELEKKFLAEAKEAGFVGLNGHRSVGGCRASTYNAVPVEACQALRDFMLEFQSKNS
>NZ_AP013294.1|WP_041071505.1|378989_379250_+|hypothetical-protein
MLWKEAHFKLESGDEVTGTIVSVGSNFLEVLVDDALPQESETTLSIPEEEHESEKREQPVGKTWIFSLDQIAHVEVVGEQPHRPCQ
>NZ_AP013294.1|WP_052483829.1|379296_379923_-|hypothetical-protein
MSGNTPDSPAPQLPSPTDDLPPELLEDIQDANDLLLDLALSDDRSIDETYQKVFDGLSDLSVQVIDQSGNAIEGKVILAGFDFVVLEGEASNIILPYPNIKKVLPAGRFAEPFPALDLLDASSGCKRELAFRFGETVASSPELIHLFFRIRLAVYLLTLEKLPIEVITEDDTFQGTLGYVSKETICLATEAKEIEIPIGRIRLIRVVY
>NZ_AP013294.1|WP_041071508.1|382918_383335_-|hypothetical-protein
MDTIIWLFLYLDSCLFFGFYLYVRKIKKRIGFQLGMNISMAMGGMMAMLSGVLFILQFPFHFTYITMLSALVGMGTGAVFGHLFDYQTFVTGLTNGAVVGLMSPMIGTVVEMPVLFVWSLHILFVISLMVILSSIQRS
>NZ_AP013294.1|WP_041071511.1|383527_384289_+|collagen-like-protein
MERCPKCHQDIFCTCGEATRGKRGPRGYQGPPGEPGCPGPPGERGEPGPPGPKGERGPRGFHGLEGLPGERGEKGEQGEKGERGPQGERGPRGPAGSPGPKGERGERGPKGSTGPPGPRGETGPAGTSDSAYGFAHTDTRQSTSGPIHLPVTGPLREVAPAEAGLQVNKDGVYQISYQVLLDSKMISCDPSSFYLKVNGGDAPLPSMTESTTSATLTSTQLLALQAGDVIQVVAHLQEHCSYKYASLLILQVG
>NZ_AP013294.1|WP_041076159.1|384341_385061_-|lactate-utilization-protein-C
MTGTIQNRDKFLGKLANRLGRDSIATDVPRPQWSRQPQDDVLKNATPDELLEVLKTQCLVIHTDLETTDLAGLPDRLHQVVADYGGGPVITWKDERFEKFGLAPLFNETWPAENIDLHVWNPEQGEANIQFAEQANVGITISDMTLAESGTAVLFSEPDKGRTVSFLPFKSIILIPKSTIVPRMTQAARAIREKTKNGEQLASCINFITGPSNSADIEMILVVGVHGPVNATYIVIEDL
>NZ_AP013294.1|WP_041071514.1|385060_386488_-|iron-sulfur-cluster-binding-protein
MPMKIGTDNFKERVDTGLHDDFMRGAVSAAQDRLENRRLAAAEELGNWEDWRSLGEEIRQHVLANLDFYLNELSENVAKRGGHVFFAETAEEANRYIVEVAKKKEAKKVVKSKSMVTEEIDLNANLEKAGCEVIETDLGEYILQVDDHDPPSHIVAPALHKNKEQVRDVFTEKLDYQGTEKVEELTLHARKMLREDYLTADIGITGCNFAVAETGSICLVTNEGNADLATALPKTQITVMGMERLVPTFEELEVLVGLLSRSAVGQKLPSYVTVLTGPKAAGEVDGPEEFHLVIVDNGRSDILGSEFQSILQCIRCGACANICPVYRHVGGHSYGSIYSGPIGAVLSPLLGGYDDYKELPYASTLCGACTEVCPVKIPLHDLLHKHRQVIVEKEGRAPISEKLAMKAFGLGAASPALYKMGSKFAPTAMNPFTAGDKISKGVGPLKAWTEIREFPAPHKERFRDWFKNRPKGEDE
>NZ_AP013294.1|WP_041071518.1|386507_387224_-|(Fe-S)-binding-protein
MKVTLFATCLVDMFQTNVGKATVELLERLGCQVEFPESQVCCGQPAYNSGYVKDSKEAMKKMIDTFQDAEVIVCPSGSCAYMFHEYQHIFEGDPIWEPKAKKLAEKTFELTEFIVDVLKVEDVGARLEGKATFHTSCHMTRLLGVKEAPVKLLKQVKGLEFTELPNKHQCCGFGGTFSVKMAQISEQMVDEKVQHAEETEAEILIGADAGCLMNIGGRMERVGAPLKVMHIAEVLNSR
>NZ_AP013294.1|WP_052483830.1|388034_388907_+|M23-family-metallopeptidase
MMLVALPVVFLFILWRANFKSRLEWLLDALTTTLIIVWLFRSGNWSWIGYPVRYLWLILLIIALVISWKKTRKLPLFMKYTGNQKFSIGIYVILLLVFGFYNVSTSTAHSVNEQTLDLAFPLLDGAYYVGHGGDHVLLNYHHAHPPQKYALDIVGINKWGARASGLYPEDLEKYVIYGATLYSPCTGRVTDMHNTSPDLTPPDSDPDHPVGNHVALACDGHDAIVYLAHMQEGSVLVQMGDEVQTGQPLGKVGNSGNTSEPHLHIHAELDGKGVPLTFDGRFLVRNQIVR
>NZ_AP013294.1|WP_158333630.1|388954_389110_-|hypothetical-protein
MSKSYAGDKDGPNKNSQDAASIANEAARKAEQQVEDIKREAADEMKKQQGR

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Crispr_ID: NZ_AP013294_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013294_3

1001418-1001504

Orphan

Consensus_repeat	Method
AAATCGAACCCTTCGCTGTTCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP013294_3

>merge|NZ_AP013294|3|1001418-1001504|CRISPRCasFinder
AAATCGAACCCTTCGCTGTTCGAGAAGCGTGCCTTAATTTCTGCAGAGTACGCAGAAATACGGCAAATCGAACCCTTCGCTGTTCGA

>NZ_AP013294|3|3|1001418-1001504|CRISPRCasFinder
AAATCGAACCCTTCGCTGTTCGA	GAAGCGTGCCTTAATTTCTGCAGAGTACGCAGAAATACGGC
AAATCGAACCCTTCGCTGTTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013294.1\|WP_041072433.1\|1000510_1001056_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_070098226.1\|1004995_1005208_+\|pro-sigmaK-processing-inhibitor-BofA-family-protein	unknown	unknown	gnl\|CDD\|377835
NZ_AP013294.1\|WP_041072429.1\|998504_999563_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
NZ_AP013294.1\|WP_041072437.1\|1004068_1004665_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_AP013294.1\|WP_041072419.1\|993721_994222_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_AP013294.1\|WP_158333645.1\|1011490_1011646_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041072427.1\|997212_998508_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_AP013294.1\|WP_041072434.1\|1001950_1003717_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_AP013294.1\|WP_041072423.1\|994979_995639_+\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|224345
NZ_AP013294.1\|WP_041072439.1\|1004677_1004890_+\|YaaL-family-protein	unknown	unknown	gnl\|CDD\|378478
NZ_AP013294.1\|WP_041072449.1\|1014182_1014512_+\|cyclic-di-AMP-receptor	unknown	unknown	gnl\|CDD\|283747
NZ_AP013294.1\|WP_041072417.1\|992425_993700_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_AP013294.1\|WP_041072431.1\|999562_1000456_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_AP013294.1\|WP_041072421.1\|994344_994977_+\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|238836
NZ_AP013294.1\|WP_041072445.1\|1012062_1013499_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224893
NZ_AP013294.1\|WP_041072451.1\|1014531_1014972_+\|YaaR-family-protein	unknown	unknown	gnl\|CDD\|377152
NZ_AP013294.1\|WP_052483876.1\|991136_991982_+\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	unknown	unknown	gnl\|CDD\|179769
NZ_AP013294.1\|WP_041072447.1\|1013498_1014131_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_AP013294.1\|WP_041072435.1\|1003736_1004057_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_AP013294.1\|WP_041072425.1\|995686_997054_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364

Protein	Function_ID	Function_description	E-value
NZ_AP013294.1\|WP_070098226.1\|1004995_1005208_+\|pro-sigmaK-processing-inhibitor-BofA-family-protein	gnl\|CDD\|377835	pfam07441, BofA, SigmaK-factor processing regulatory protein BofA. This family contains the sigmaK-factor processing regulatory protein BofA (Bypass-of-forespore protein A) (approximately 80 residues long). During sporulation in Bacillus subtilis, transcription is controlled in the developing sporangium by a cascade of sporulation-specific transcription factors (sigma factors). Following engulfment, processing of sigmaK is inhibited by BofA. It has been suggested that this effect is exerted by alteration of the level of the SpoIVFA protein.	0.00815797
NZ_AP013294.1\|WP_041072429.1\|998504_999563_+\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NZ_AP013294.1\|WP_041072437.1\|1004068_1004665_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	6.23151e-129
NZ_AP013294.1\|WP_041072419.1\|993721_994222_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	2.98241e-68
NZ_AP013294.1\|WP_041072427.1\|997212_998508_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_AP013294.1\|WP_041072431.1\|999562_1000456_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	1.70806e-97
NZ_AP013294.1\|WP_041072423.1\|994979_995639_+\|deoxynucleoside-kinase	gnl\|CDD\|224345	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism].	3.62158e-83
NZ_AP013294.1\|WP_041072439.1\|1004677_1004890_+\|YaaL-family-protein	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	1.90548e-14
NZ_AP013294.1\|WP_041072449.1\|1014182_1014512_+\|cyclic-di-AMP-receptor	gnl\|CDD\|283747	pfam06153, CdAMP_rec, Cyclic-di-AMP receptor. CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. Cyclic-di-AMP (c-di-AMP) is a bacterial secondary messenger involved in various processes, including sensing of DNA-integrity, cell wall metabolism and potassium transport. CdAMP_rec has a ferredoxin-like fold and is structurally related to Pii-signal transduction proteins.	5.37083e-69
NZ_AP013294.1\|WP_041072417.1\|992425_993700_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_AP013294.1\|WP_041072434.1\|1001950_1003717_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_AP013294.1\|WP_041072421.1\|994344_994977_+\|deoxynucleoside-kinase	gnl\|CDD\|238836	cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.	8.63583e-62
NZ_AP013294.1\|WP_041072445.1\|1012062_1013499_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	7.76735e-132
NZ_AP013294.1\|WP_041072451.1\|1014531_1014972_+\|YaaR-family-protein	gnl\|CDD\|377152	pfam03885, DUF327, Protein of unknown function (DUF327). The proteins in this family are around 140-170 residues in length. The proteins contain many conserved residues. with the most conserved motifs found in the central and C-terminal region. The function of these proteins is unknown.	3.44243e-42
NZ_AP013294.1\|WP_041072435.1\|1003736_1004057_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	1.01476e-41
NZ_AP013294.1\|WP_041072447.1\|1013498_1014131_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	3.02721e-97
NZ_AP013294.1\|WP_052483876.1\|991136_991982_+\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	gnl\|CDD\|179769	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS.	0
NZ_AP013294.1\|WP_041072425.1\|995686_997054_-\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0

>NZ_AP013294.1|WP_041072433.1|1000510_1001056_+|hypothetical-protein
MKRIVMFLAVVLIGFGVYAVGYFSTYNIPKSEKAAEEFLIEFDAKKSGMGVSAVVGWMQLGESDSWLARVSFEDGVYGYAHFEKGWNGKMKFMSLGTTQPLTYREFKTNDGFYGVVFGRNDNLTIDHINVKTLGSTTYEFVIHVANRENFMVGEKLPDGVQDTFPAEFEVVDKEGNLLEAG
>NZ_AP013294.1|WP_041072431.1|999562_1000456_+|homoserine-kinase
MTEANFSVVVPATTANLGPGFDSIGLALALYMTVDVEPSEAWGVSYDGDEYGSLPNGADNLIVQTVLKVAARYDKKVSTHSLRVHSDIPLGKGLGSSATAIAAGIEIADQLAGLDLTPMEKVKIGSEMEGHADNVSAALLGGVTISYYAGDSIDIVHIREPQMGAVILVPPEALRTEESRGLLPGQLPHAKATLGSAASSVMAAAIARDDWATAGKMMEQDIFHEPYRKHLFPDFEEIRLAAKEIGAYGMTISGAGPSIFIAVKSGEEARIADQLMGKFPYYNGLAVQPSSDGAVVK
>NZ_AP013294.1|WP_041072429.1|998504_999563_+|threonine-synthase
MKRWNGLIEEYKEWLPVTENTPALTLQEGNTPLIHMKTLSEQWGIDLYVKTEGTNPTGSFKDRGMVMAVAKAKEEGKKILICASTGNTSASAAAYGARAGMRTIVVIPEGRIALGKLAQARMYGAEILQIEGNFDEALQMVREAGEGDIALVNSVNPHRLEGQKTIAFETIEQLGKVPDIFALPVGNAGNISAAWKGFKEYAEKKGTDLPELLGVQADGAAPIVYDRVFENPETVATAIRIGNPASWQLAKNALAESKGNILSVTDEEILEAYRLISSKEGVFAEPGSCASIAGLKKQVESGLVKKGSTVVAILTGNGLKDPDTAIEVNKDEPFLSREQFDQILSELKEGKN
>NZ_AP013294.1|WP_041072427.1|997212_998508_+|homoserine-dehydrogenase
MKNEINIGLLGFGVVGSGVAKILDNHQEDLQHKLGVPVSIKKVLVKNLNKERDCDLPADVFTTDLDEILGDSSIDLIVEVIGGTSEAREAIEKSLNAGKGVVTANKDVMAEYGLDLLQLADENKCDLFFEASVGGGIPLIRTLEDGLASDRISALTGIVNGTTNFILTKMKHENMSYEDALAEATELGFAEADPTADVDGIDAARKMVILASLAFSTEVRLDDVFVRGLREIQDGDLELAEQFGYTVKLAGSAKKNEDGIEVAVEPVLLPNSHPLASVNNEFNAVYVYGEAVGETMFYGPGAGSLPTATSVTGDIVAACRNLLMGVNGRRTHSPQHERHVKTDDQKFARYFHRIRVKDEVGVLTKLTAIYSRYGASLATVIQDSDNGVEADLIFITHQISRQQHLDIMNELNETPEVIHVLSHYRVEGESR
>NZ_AP013294.1|WP_041072425.1|995686_997054_-|aspartate-kinase
MKVCKFGGTSVATADQIKKVADIILSDPTRKIVVVSAPGKRSDEDTKVTDLLIRLAEAALDGKDATAQLGEVVERYRQIAEGLELSNDIVQVIEHDLKERLEGDKNDPTLFTDTLKAAGEDNNAKLIAEYFSSIGIEAQYISPKEAGLLVNQRPARVQALPEGDAQLAKLRELPGIIVFPGFFGFTEDGTLRTFNRGGSDITGSLLAAATDAELYENFTDVDSVFAANPRIVDEPAAISKMTYREMRELAYAGFSVFHDEALIPAFRRSIPVCIKNTNNPSAPGTLIVKERDHSSQPVIGIAADHGFSTLFVDKFLMNLEIGFGRRLLQILEEEEIPYEHTPSGIDNLSVIIRSRFLTPGKEQRILERVKEELKPDKVFFNHDYSMIVLVGEGMRDTTGLAARAAGAIARTGTSIQMINQGSSEVSLVFGVLKEDETIILKELYKEFFSNIKVCS
>NZ_AP013294.1|WP_041072423.1|994979_995639_+|deoxynucleoside-kinase
MKLRDQYNIPHNTVITVAGTVGVGKSTMAQALAEALGLRTSFEKVNENPYLERFYDDFEKWSFHLQIYFLAERFKEQKRMFEYGGGFVQDRSIYEDTGIFAKMHMENGTMDPVDYSTYTELFEAMVMTPYFPHPDVLIYLEGSPDVILERIRERGRPMEQETPISYWTEMYARYADWIDSFNACPVLRIDVSDYDLLRRPEEVEMIVERIGIVLQHAKR
>NZ_AP013294.1|WP_041072421.1|994344_994977_+|deoxynucleoside-kinase
MAIPFLAVEGPIGVGKTSLAKTIAETWNYKLLQEIVYENPFLGKFYENMEEWSFQTEMFFLCNRYKQLNDIKQGMIADPQPVVSDYHIFKNLIFAKRTLPPAEYQKYEEIYMILTRDMPVPNIIIYLHASLDKLMERIAKRGREFEKNMDTAYLRQLADDYEVFMNEFERAHPSIHVLRFDGDATDFVNNRTDRDTILKAIQAVLDKGAF
>NZ_AP013294.1|WP_041072419.1|993721_994222_-|nucleoside-deaminase
MDVFETDRSFMRLAIKEAKKAEALGEVPIGAVIVHEGNIIARAHNLRETSQNAVTHAELSAIQEACQTLGSWRLEQTTLYVTLEPCPMCAGAILQSRVPRVVYGARDPKGGCVDSLYRLLNDPRFNHECEVTEGILGEECGDMLSAFFRAIRERKKREKKAASEIE
>NZ_AP013294.1|WP_041072417.1|992425_993700_+|serine--tRNA-ligase
MLDIKKIRADFDGVKEKLSKRGEDLTDFDKFGGLDEKRRELIAKVEVLKAERNEVSQQVATMKRNKENADDVIARMREVGDDIKKLDEELNQVEEELNYVMMRIPNIPHESVPVGDSEDDNVEVRTWGAQPEFSFEPKPHWEIGTDLNLLDFERAAKVTGSRFVFYRGLGARLERALINFMLDLHIEEHGYEEMLPPYLVNRTSLTGTGQLPKFEEDAFLVEEEDYFLIPTSEVPVTNFYRDEILDGSQLPAAFAAYSTNFRSEAGSAGRDTRGLIRQHQFNKVELVRFVKPEESYDELEKLTGHAEKVLQLLNLPYRVLKMCTADLGFTAAKKYDIEVWIPTQNTYREISSCSNFEDFQARRAHIRFRREAGAKPEYVHTLNGSGLAIGRTVAAILENYQQEDGSVIIPEVLRPYMGGKEVIR
>NZ_AP013294.1|WP_052483876.1|991136_991982_+|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS
MNFQYGGVIMDVINAEQAKVAEASGAIAVMALERVPSDIRKAGGVARMADPRIIEEVKNAVSIPVMAKARIGHISEARVLEALGVDYIDESEVLTPADEEFHLLKSAFSVPFVCGARDLGEAARRLGEGAKMLRTKGEPGTGNIVEAVRHLRKVNAQVNKIVHMNEEELMTEARDLGAPYDVLLAIKEHGRLPVTNYAAGGVATPADAALMMELGADGVFVGSGIFKSDNPEKFARAIVQATQNFKDYALIGELSKDIGNPMKGLEIGTLLQEERMSERGR
>NZ_AP013294.1|WP_041072434.1|1001950_1003717_+|DNA-polymerase-III-subunit-gamma/tau
MVYQAFYRVYRPQSFTEMSGQHHVKQTLQNALLHNKTTHAYLFSGPRGTGKTSAAKVFAKALNCENGPAKEPCNECPSCRSITDGSNTDVIEFDAASNSRVEEMRDIIEKVRFAPSNARFKVYIIDEVHMLSNSAFNALLKTLEEPPSHVVFILATTEPHKLPLTIISRCQRFDFKPITSVEIIERMKTVLADAGIESDEGALKVIAQAASGGMRDALSMLDQVVSFSGDRVTVEDALLVTGSIGEDIFYQLAEALLERDAGTAISLLDSLIAEGKDVGRLAEDLITFFRDLLLLRTAPDLKDLLELIAGDPRFVELAQTFDMDVLYAFIDILAKTQQEMRFSNHAKVYIESALLKMIHVRQQPVGIGGTSHSEVDPALAEKVEMLERTVQELRQQIANGGGGQSRAEERSAQARKSASKSSQSFKVPVGRIHEVLKAATKQDILTIRQEWAGMMQTMQKSHAALLEETEPVAASESAFVLKFKYEIHCLMASENPSLRTGLSEALRSRTGKPYEVVYVPEEGWLKVREDFIRTNGLGKQQGPPSTEEEPVAEETLSFVTEAEQENTDPVVTEAAKIFGEDFIKVYDD
>NZ_AP013294.1|WP_041072435.1|1003736_1004057_+|YbaB/EbfC-family-nucleoid-associated-protein
MRGMGNMQGMMKQMQKMQKKMADAQEKLGEERMEGTAGGGMVKVIVSGHKEVLEVIIDPSVVDPEDVEMLQDLVVIATNEAMTKAEELANSTMGQFTKGLNLPGMF
>NZ_AP013294.1|WP_041072437.1|1004068_1004665_+|recombination-protein-RecR
MHYPEPISKLIDSFMKLPGIGPKTAGRLAFFVLGMKEDTVLDFAKALVDAKRNLRFCSVCGHITDIDPCHICQDSRRDHSMICVVQDPKDVIAMEKMRDYNGLYHVLHGAISPMDGIGPEDINVPSLLTRLQDEEVQELILATNPTIEGEATAMYISRLVKPSGITTTRIAHGLPVGGDLEYADEVTLSKALEGRREL
>NZ_AP013294.1|WP_041072439.1|1004677_1004890_+|YaaL-family-protein
MFGRKRKLKNEFDERLRSLMMETKEEWENAREIERYINDYDLEVITQRKIAESKHFYLFKEAKERRLGKD
>NZ_AP013294.1|WP_070098226.1|1004995_1005208_+|pro-sigmaK-processing-inhibitor-BofA-family-protein
MLDKKQIRNGAERLSIFWFRLAFAFLLLFAMNIAGGFIGIYVPVNIASGLILAILGIPGFVSLCTLAVLL
>NZ_AP013294.1|WP_158333645.1|1011490_1011646_+|hypothetical-protein
MTKDISTSGKVSALPGDYQRLLQDIGTSRKLSAVVQRYQHLPRNIGSCPAL
>NZ_AP013294.1|WP_041072445.1|1012062_1013499_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MNPIDRPLIDALIQFNKNKPLSLHVPGHKNGALSGLPSDLRAALPFDVTELEGLDDLHEPAGAIEEAQRKLAALYGAERSFFLVNGSTVGNLAMIYATCRRGETIIVQRNAHKSVFHAIELAGAHPVFITPAWNEDVLTPGLVSIEQIEEALHSFPEAKAVVLTYPTYYGTANNGLEKIIRFCHAQGVPVLVDEAHGAHFVLGEPFPRSALEMGADVVVHSAHKSLPAMTMASFLHIRSSLVDPERVAHTLHMLQSSSPSYLLMASLDDARAYVESYTAEDMAYFLKERQAFIEQLESIPGLQPVKMDDPLKLTLRVTGYSGFAIQQCLSAEGVYVELADLYQVLLILPLVKQGARYPLKTVYERINRALTKLAPGTSEQRGEVRLLAIHEKVSQPAYLPSQLADLESEWISYKDAEDRVAAASIIPYPPGIPLLIGGEAVGKEHIRSLRELIAGQARFQGAIQVENELILVVKDGGN
>NZ_AP013294.1|WP_041072447.1|1013498_1014131_+|dTMP-kinase
MEQCGIFISFEGPEGAGKTTALMNVYERLKADGRQVIVTREPGGITISEKIRSIILDNDHEEMDGRTEALLYAAARRQHLVEKIEPALRQGRIVLCDRFIDSSLAYQGHARGLGMEEVLAINKFAIGETMPDLTIFFDIPPEAGLARIASNENREQNRLDNESLQFHRVVYEGYQQVLQRYPERIRSVDASLSEEEVAEKVWKLIYSQLI
>NZ_AP013294.1|WP_041072449.1|1014182_1014512_+|cyclic-di-AMP-receptor
MKLVVAVVQDQDSNRLSNALTKNDFRATKLASTGGFLRSGNTTFLIGTEDSLVPKALELIRDNCRSRDQMVAPVSPMGGNADSYIPYPVEVAVGGATVFVLPIEQFHHF
>NZ_AP013294.1|WP_041072451.1|1014531_1014972_+|YaaR-family-protein
MKVNGDYRAGLDKLRNNPLQTPQGGARFGEMVTKQEQRLQGEQITRLLGDISTVGDRIARSRNLRDMAKFKMLVKRFLKEAVDSGLGLKQSHTWNQFGEGRRLKIVQTIDEKLIEFAEDLLDEEKTSVDLLAKIGEIKGLLINLYM

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Crispr_ID: NZ_AP013294_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013294_4

1479997-1480081

Orphan

Consensus_repeat	Method
GCTTCCCGCCCATAACTCGCGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP013294_4

>merge|NZ_AP013294|4|1479997-1480081|CRISPRCasFinder
AGTACGCGCTCATAATTTGCGTGCTGCGCCCATAGATCGCCATCGCCGCTCATAAGAAGTGGCTCCGCGCTCATAACTCGCATGC

>NZ_AP013294|4|4|1479997-1480081|CRISPRCasFinder
AGTACGCGCTCATAATTTGCGTGC	TGCGCCCATAGATCGCCATCGCCGCTCATAAGAAGTG
GCTCCGCGCTCATAACTCGCATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013294.1\|WP_041073142.1\|1472690_1474199_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_AP013294.1\|WP_041073166.1\|1486171_1486609_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_AP013294.1\|WP_041073163.1\|1482866_1483859_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237563
NZ_AP013294.1\|WP_041073138.1\|1471077_1471302_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|180739
NZ_AP013294.1\|WP_041073148.1\|1475393_1476809_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_AP013294.1\|WP_041073136.1\|1470285_1471011_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_AP013294.1\|WP_041073167.1\|1486700_1487093_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041073150.1\|1477041_1477446_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_AP013294.1\|WP_041076426.1\|1482414_1482684_+\|sporulation-transcriptional-regulator-SpoIIID	unknown	unknown	gnl\|CDD\|378813
NZ_AP013294.1\|WP_041073165.1\|1484787_1485624_+\|flagellar-hook-basal-body-protein	unknown	unknown	gnl\|CDD\|227125
NZ_AP013294.1\|WP_041073140.1\|1472125_1472665_+\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
NZ_AP013294.1\|WP_041073153.1\|1478367_1479663_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_AP013294.1\|WP_041073161.1\|1481595_1482258_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_AP013294.1\|WP_041073146.1\|1474495_1475350_+\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_AP013294.1\|WP_041073164.1\|1483916_1484756_+\|flagellar-hook-basal-body-protein	unknown	unknown	gnl\|CDD\|227125
NZ_AP013294.1\|WP_084212405.1\|1485792_1486125_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|378713
NZ_AP013294.1\|WP_041073168.1\|1487217_1487601_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041073151.1\|1477782_1478010_+\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|227173
NZ_AP013294.1\|WP_041073159.1\|1480616_1481585_+\|stage-II-sporulation-protein-D	unknown	unknown	gnl\|CDD\|274332
NZ_AP013294.1\|WP_084212548.1\|1471574_1472129_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|184060

Protein	Function_ID	Function_description	E-value
NZ_AP013294.1\|WP_041073142.1\|1472690_1474199_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_AP013294.1\|WP_041073166.1\|1486171_1486609_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	2.58012e-94
NZ_AP013294.1\|WP_041073163.1\|1482866_1483859_+\|rod-shape-determining-protein	gnl\|CDD\|237563	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.	0
NZ_AP013294.1\|WP_041073138.1\|1471077_1471302_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|180739	PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.	1.79293e-20
NZ_AP013294.1\|WP_041073148.1\|1475393_1476809_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_AP013294.1\|WP_041073136.1\|1470285_1471011_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.04437e-67
NZ_AP013294.1\|WP_041073150.1\|1477041_1477446_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	2.45743e-44
NZ_AP013294.1\|WP_041076426.1\|1482414_1482684_+\|sporulation-transcriptional-regulator-SpoIIID	gnl\|CDD\|378813	pfam12116, SpoIIID, Stage III sporulation protein D. This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.	1.05706e-26
NZ_AP013294.1\|WP_041073165.1\|1484787_1485624_+\|flagellar-hook-basal-body-protein	gnl\|CDD\|227125	COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion].	1.41282e-50
NZ_AP013294.1\|WP_041073140.1\|1472125_1472665_+\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	6.28624e-52
NZ_AP013294.1\|WP_041073153.1\|1478367_1479663_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_AP013294.1\|WP_041073161.1\|1481595_1482258_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.56613e-14
NZ_AP013294.1\|WP_041073146.1\|1474495_1475350_+\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	9.63073e-156
NZ_AP013294.1\|WP_041073164.1\|1483916_1484756_+\|flagellar-hook-basal-body-protein	gnl\|CDD\|227125	COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion].	1.53192e-72
NZ_AP013294.1\|WP_084212405.1\|1485792_1486125_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|378713	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta. This short 60-residue long bacterial family is the beta subunit of the DNA-directed RNA polymerase, likely to be EC:2.7.7.6. It is membrane-bound and is referred to by the name EpuA.	8.41659e-21
NZ_AP013294.1\|WP_041073151.1\|1477782_1478010_+\|DUF1146-domain-containing-protein	gnl\|CDD\|227173	COG4836, COG4836, Predicted membrane protein [Function unknown].	6.86613e-15
NZ_AP013294.1\|WP_041073159.1\|1480616_1481585_+\|stage-II-sporulation-protein-D	gnl\|CDD\|274332	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell. [Cellular processes, Sporulation and germination].	1.23342e-84
NZ_AP013294.1\|WP_084212548.1\|1471574_1472129_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|184060	PRK13453, PRK13453, F0F1 ATP synthase subunit B; Provisional.	1.92976e-37

>NZ_AP013294.1|WP_041073153.1|1478367_1479663_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MDKIIITGGRVLKGNVRVEGAKNAVLPILAAALLATKGTNIIRDVPDLSDVGTINEVLRSLHARVEYSPEDGEVRIDSSGQLSTEAQFEYVRKMRASILVMGPLLARHGFARVALPGGCAIGSRPIDQHLKGFEAMGAEITFGHGHVEAKAEHGLKGAKIYLDFPSVGATENIMTAAALAEGTTIIENAAKEPEIVDLANFINEMGGRVVGAGTDSIRIEGVTELYGTTHHIIPDRIETGTFMVAAAITGGDIIIENAVPEHNAALISKMGEMGVSITELEEGIRVKATHPLKAVDLKTMPHPGFPTDMQSQMMALMLTSEGTGVLTETVFENRFMHVEEFRRMNANVKIEGRSVIVMGPSKLQGAEVAATDLRAAASLILAGLVAEGVTRVTELEHLDRGYVNFHGKLAALGADIIRISETSEEKAKQFA
>NZ_AP013294.1|WP_041073151.1|1477782_1478010_+|DUF1146-domain-containing-protein
MLGYHPLLVIASHIFFIGVSFFALQAVRSEKIIRKNRVLQAQLLFILISISIGWAVSNFFLEISYWSRRIPFLFE
>NZ_AP013294.1|WP_041073150.1|1477041_1477446_+|F0F1-ATP-synthase-subunit-epsilon
MKTMKVNIVTPDGPVCETEADMIIAAAESGEIGILPGHIAMVAPLQIGDLRLKKDGATEHVAVHGGFIEVRPDVVTVLAQSAEMAATIDLARAKAAAKRAEEKLRAQSDEKEHQIMEYALQRAITRIKVYETRL
>NZ_AP013294.1|WP_041073148.1|1475393_1476809_+|F0F1-ATP-synthase-subunit-beta
MNKGQILQVMGPVVDVKFDGGNLPDIYNALKVQIQRANAEAETLTLEVALHLGDDSVRTIAMSSTDGLQRGAEVLDTGAAISVPVGDVTLGRVFNVLGEVIDLREEIPASEQRDPIHRSAPTFENLSTEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGISVFAGVGERTREGNDLYHEMTDSGVINKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLSEMGIYPAVDPLASTSRALSPEIVGEEHYEVARQVQSTLQRYRELQDIIAILGMDELSEEDKLVVGRARRIQFFLSQNFHVAEQFTGQAGSYVPVAETIKGFKEILDGRYDHLPEDAFRLVGRIEEVIEKAKGMGVEV
>NZ_AP013294.1|WP_041073146.1|1474495_1475350_+|F0F1-ATP-synthase-subunit-gamma
MASLRDIETRIKSTKKTSQITKAMQMVSASKLTRAEQNAKAFVPYMEKIQEVVGSIAAGTSDSGHPMLTSRPVKKTGYIVITSDRGLVGGYNANILRVARRAIESRHKSKDEVMIIAIGRKGFEFFNRMGFNVVESLIGLSDHPTFGEIKDIANRAVGMFTEGVYDEVYLYYNHFVSAISSEATEKKLLPLTDLTSAPTASYEFEPSGEAILEVLLPQYAESLIFGAVLDGKASEHASSMTAMQTATDNASELIDSLTLSFNRARQAAITQEITEIVGGVAALE
>NZ_AP013294.1|WP_041073142.1|1472690_1474199_+|F0F1-ATP-synthase-subunit-alpha
MSIKAEEISSLIKQQIEGYQSEMEVSEVGTVIVIGDGIARAHGLDNVMAGELLEFSNGVMGMAQNLEANNVGIVILGPYTDIKEGDEVRRTGRIMEVPVGEELIGRVVNPLGQPVDGLGPIATTKTRPIESPAQGVMARKSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTILNQADQDMICIYVAIGQKESTVRGVVETLRKNGALDYTIVVTASASQPAPLLYLAPYTGVTMAEEFMFQGKHVLVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDTLGAGSITALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLSVSRVGGSAQIKAMKKVAGTLRLDLAAYRELEAFAQFGSDLDAATKAKLDRGARTVEVLKQDLNKPLKVEYQVVSLYALTRGFLDDVAVKDILRFESEINTWLESNHTEVLEHIRTTKDLPSDDVMADAINAFKKTFVPSE
>NZ_AP013294.1|WP_041073140.1|1472125_1472665_+|F0F1-ATP-synthase-subunit-delta
MSQSVAAKRYALALFELAQEKGLTGQLREELLEVKKVFLDNEKLGELLETPRLTEEAKKNLLSGAFQTANPYVLNALFVLLEKKRINEVVNVVEEFVEYANDAAGVADAKVYSTRPLTESESQSISAAFARKVGKLSLRIENIIDPSLIGGIRLQIGNQIYDSSLSAKLNRLKRDLIGS
>NZ_AP013294.1|WP_084212548.1|1471574_1472129_+|F0F1-ATP-synthase-subunit-B
MFLDNFVLLAAEAPNSGFLASLNNRLNLGDIIVTVVFFTILMILLKKFAWGPLMGVMDQRAELIAKEIEEAEKSRAESQKLLDEQRNLLKTAREDAQQIVESARKQGDAQREELVQAARAEVSRMKDSAALEIATEKEKAIAAVREEFVSLSILAASKVLGKEVSEEDNRALIEETIVKAGDAQ
>NZ_AP013294.1|WP_041073138.1|1471077_1471302_+|F0F1-ATP-synthase-subunit-C
MVGSVGLLAAALAIGLGALGAGIGNGLIVSKTVEGIARQPEARGVLQTTMFIGVALVEALPIIATVVAFIVMNQ
>NZ_AP013294.1|WP_041073136.1|1470285_1471011_+|F0F1-ATP-synthase-subunit-A
MNHENPLWTAFEGTAFELTFNLSNVLMLFITCLIVFLIAVAATRNLQVKPTGMQNFFEWIMDFVKGIIKNNMDWKTGGRFHVLGITLIMFVFVANVLGLPMAISWDYKLWWKSPTADPVITMTLATMVVALTHYYGVRQLGMKQYLTGYIKPFPFLAPINIIEEFANTLTLGLRLYGNIYAGEILIGLLASLGASSFFGFAGALVPALAWQGFSLFIGAIQAFIFVMLTMVYMAHKVNTDH
>NZ_AP013294.1|WP_041073159.1|1480616_1481585_+|stage-II-sporulation-protein-D
MDKLLTVFFIILLFFIPILLKQPLPTKNLTEELHEELCPVVIRVEGIKEPIPLEEYVVGVVAAEMPATFHPEALKAQAIAARTYALRSTDSGKKPIAADVSAQVYATEADRKERWKKEFKRNEKKVRSAVEATAGEIVKYEDQLISAMFFSTSNGKTEAAKNFSGNDIPYLQSVESAGEEQVAPQVERQIEMSLADWNRAMGNQWNADHFRSLQLVRNPTGRVQKAVTTGYETSGREMRDLLGLASTDFDIAFDVTNEIVHVTTTGYGHGVGMSQYGAEAYAQKGWNAEKILQHYYTATEIKKFKLDDSECLKTPSLANNSK
>NZ_AP013294.1|WP_041073161.1|1481595_1482258_+|M23-family-metallopeptidase
MREEKPKSPSQMNKGPKKNNWFWPVLYSAIAVVFVGMIWGYNAFMKSDSSEQADMAGKDPSDSVVVETNAGNETLKYPFAETLLDDAVILHEFYDAGASEEMRESALLVFDQKYVTNTGVCISVGGEPFEVVAAMSGKVKEVIDDPFKGSEVTITHADGKETTYGSLTGVLVKPDEEVVQGQAIATATENEWNPEAGVYLHFEVKEDGVTKNPRTYLGFQ
>NZ_AP013294.1|WP_041076426.1|1482414_1482684_+|sporulation-transcriptional-regulator-SpoIIID
MHEQIRRRCVRLGKMLLETGLTVRALAKATGYSKSTVHKDLTDRLPNVDLALSEEVAKILAYHKSVRHLRGGEATRIKWMNETKKIGDE
>NZ_AP013294.1|WP_041073163.1|1482866_1483859_+|rod-shape-determining-protein
MFSKDIGIDLGTANVLIHVKGKGIVLNEPSVVAVDKKTNKVLAVGEEARQMVGRTPGNIIAIRPMKDGVIADFDVTEAMLRHFINKLNVKGFLSKPRILICCPTNITSVEQKAIRQAAEKSGGKQIYLEEEPKVSAVGAGMDIFQPSGNMVIDIGGGTTDVAVLSMGDIVTSQSIKVAGDTFDTDITNYIKKEYKLLIGERTAENIKINVGTVFPGGRKEEIDIRGRDLVTGLPRTITVNSQEIGDALKESVYLIVQAAKNVLEKTPPELSADTIDRGIFLTGGGALLHGIDQLLAEELKVPVFIAESPLDCVAIGTGILLENMGKASMV
>NZ_AP013294.1|WP_041073164.1|1483916_1484756_+|flagellar-hook-basal-body-protein
MFRGFYTVGSGMIAQQRKTELLANNIANANTPGFKADQSVIRSFPEMFMSSIETARIPTKNGFQMKGLSPVGPISTGVYMQETLPLFTQGQLRETGLNTDVALIDGLLPTDEETGIQGAIFFRLENEGGTEHYTKNGNFALDPNGFLTHPAGYYVLDENGQRIELQNDDFHITSEGVIMDGDNEVATIGVSFAQRPDTLMKLGNGTFVQEGGGDLPAADGVAGVTYSMQQRYLEASNVDAARAMTDMLTAYRAFEANQKILQAYDRSMEKTVTEVGRVT
>NZ_AP013294.1|WP_041073165.1|1484787_1485624_+|flagellar-hook-basal-body-protein
MIRTMATATNTLNQLQHQFDIIGNNLANASTHGYKSNEASFHELLYQQFNNDKADEAPRQSPLGIRYGTGAVLGQAQVNWKIGSLQMTGRELDFALTEPKQHFNILMPGENGEQTVYTRQGNFYVSPVANGQLMLVTGDGYPVANSAGQPITFADNVQSYKVQPGGVLEMTFTDGTVGQAELGITVMERPNVMTRLSATNFALPENLADLGVNEADILTEIQGAARNGIGLQNQALEASNVNYEKEMTDLISVQRSYQFNARTVTLADQMLGLINGIR
>NZ_AP013294.1|WP_084212405.1|1485792_1486125_+|DNA-directed-RNA-polymerase-subunit-beta
MTDEKRYGSNQIGRERLETEAPAKRSLRTSRHERKKKEEETGQPEESRKWVQIRILPIWLRILLVLLLLAGAAILGAMIGYGYLGDGQPSEVLKKETWTHIFDIMNGKES
>NZ_AP013294.1|WP_041073166.1|1486171_1486609_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MLTASQIQEIIPHRYPFLLVDRILELEEGKRAVGLKNVTANEDFFNGHFPGYPVMPGVLIVEALAQVGAVAMLQKEENKGRLAFFAGIDNCRFKRQVTPGDTLRLEVEIVRLRGSIGKGKAVATVDGEIACETEMTFALGPASGN
>NZ_AP013294.1|WP_041073167.1|1486700_1487093_+|hypothetical-protein
MFKDLSPNIKSSITRSITQTFEQYMSNIEWSEERFSIDDYFSSWREYITTKALWYNKIPDAMKQDPKFHQDLADRINEIIERILSEPPSEEQIATIQMMQEELGTHYEYECKAEALYVENILKNYIQNQR
>NZ_AP013294.1|WP_041073168.1|1487217_1487601_+|hypothetical-protein
MFKKVLPLVFMSGLVLAACNNNGDNENNGNNGAVPNNNETPMENLEDRTRDWTPDVNNNDVNNNGQTGPNLDGIDNGNDNRVRDGIINDTDMNNGLDTGDTTTTPRDNVKDDLNNNRKNNMNGTNNR

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Crispr_ID: NZ_AP013294_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP013294_5

3416305-3416412

Orphan

Consensus_repeat	Method
CATGACAGGTTCCTCGATTGCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP013294_5

>merge|NZ_AP013294|5|3416305-3416412|CRISPRCasFinder
CATGACAGGTTCCTCGATTGCCCTCATAGTTTCGGGAATTGCCATGACACTTCCGGGGGTTTTCCCATGACAGTTTGGACGAGCCATGACAGGTTCCTCGATTGCCCT

>NZ_AP013294|5|5|3416305-3416412|CRISPRCasFinder
CATGACAGGTTCCTCGATTGCCCT	CATAGTTTCGGGAATTGCCATGACACTTCCGGGGGTTTTCCCATGACAGTTTGGACGAGC
CATGACAGGTTCCTCGATTGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP013294.1\|WP_041075794.1\|3423730_3424366_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234971
NZ_AP013294.1\|WP_041075763.1\|3408913_3409459_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224427
NZ_AP013294.1\|WP_041075777.1\|3416528_3417593_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717
NZ_AP013294.1\|WP_041075781.1\|3418555_3419611_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235440
NZ_AP013294.1\|WP_052484210.1\|3414530_3415061_+\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_AP013294.1\|WP_158333769.1\|3418281_3418425_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041075769.1\|3412385_3413060_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_AP013294.1\|WP_041075789.1\|3421876_3422461_-\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|234873
NZ_AP013294.1\|WP_041075771.1\|3413062_3414478_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP013294.1\|WP_041075785.1\|3420247_3421009_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_AP013294.1\|WP_041075787.1\|3421005_3421719_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|179108
NZ_AP013294.1\|WP_041075761.1\|3407457_3408720_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NZ_AP013294.1\|WP_144399734.1\|3409507_3411304_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_AP013294.1\|WP_041075773.1\|3415129_3415429_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041075767.1\|3411466_3412222_-\|FixH-family-protein	unknown	unknown	gnl\|CDD\|379037
NZ_AP013294.1\|WP_041075759.1\|3406613_3407465_-\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_AP013294.1\|WP_041075775.1\|3415516_3415837_+\|general-stress-protein	unknown	unknown	gnl\|CDD\|378584
NZ_AP013294.1\|WP_041075779.1\|3417689_3417971_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP013294.1\|WP_041075791.1\|3422450_3423734_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|376389
NZ_AP013294.1\|WP_041075783.1\|3419603_3420245_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	unknown	unknown	gnl\|CDD\|235067

Protein	Function_ID	Function_description	E-value
NZ_AP013294.1\|WP_041075763.1\|3408913_3409459_+\|transcriptional-regulator	gnl\|CDD\|224427	COG1510, COG1510, Predicted transcriptional regulators [Transcription].	4.49901e-44
NZ_AP013294.1\|WP_041075783.1\|3419603_3420245_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	gnl\|CDD\|235067	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE.	2.16182e-116
NZ_AP013294.1\|WP_041075781.1\|3418555_3419611_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	0
NZ_AP013294.1\|WP_041075777.1\|3416528_3417593_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_AP013294.1\|WP_041075769.1\|3412385_3413060_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.73451e-88
NZ_AP013294.1\|WP_041075789.1\|3421876_3422461_-\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	6.38478e-118
NZ_AP013294.1\|WP_041075771.1\|3413062_3414478_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.1132e-59
NZ_AP013294.1\|WP_041075791.1\|3422450_3423734_-\|histidinol-dehydrogenase	gnl\|CDD\|376389	pfam00815, Histidinol_dh, Histidinol dehydrogenase.	0
NZ_AP013294.1\|WP_041075787.1\|3421005_3421719_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	gnl\|CDD\|179108	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated.	7.80138e-128
NZ_AP013294.1\|WP_041075761.1\|3407457_3408720_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	0
NZ_AP013294.1\|WP_052484210.1\|3414530_3415061_+\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	9.04575e-44
NZ_AP013294.1\|WP_144399734.1\|3409507_3411304_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	8.85219e-34
NZ_AP013294.1\|WP_041075794.1\|3423730_3424366_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234971	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed.	4.19401e-108
NZ_AP013294.1\|WP_041075767.1\|3411466_3412222_-\|FixH-family-protein	gnl\|CDD\|379037	pfam13115, YtkA, YtkA-like.	3.58612e-09
NZ_AP013294.1\|WP_041075759.1\|3406613_3407465_-\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	1.60794e-131
NZ_AP013294.1\|WP_041075775.1\|3415516_3415837_+\|general-stress-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	4.13452e-29
NZ_AP013294.1\|WP_041075785.1\|3420247_3421009_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	1.19795e-133

>NZ_AP013294.1|WP_041075775.1|3415516_3415837_+|general-stress-protein
MTVKKTVENAVQAKQEIENLVTQGYTHDDIYIFAHDKKRGDDITEALDTEKVGLSEQGFLDSMKNMFSSRGDELRSKMEAAGLTEQEAADAEKELDQGKLVLIAKK
>NZ_AP013294.1|WP_041075773.1|3415129_3415429_+|hypothetical-protein
MDPILSKIEYTIVDRKTVWHEQTFIRSSHHVTLTRQVIATGKNTFHLRDVLDLSYRPFSGGTGLFYLHTIQGVFTFTVVEDPSSFMDLFEQLKSGFSSF
>NZ_AP013294.1|WP_052484210.1|3414530_3415061_+|SCO-family-protein
MAGCGSEMAPGRELASFSFTDQDGRSFGTDELQGHIWVANFIFTNCETVCPPMTMEMASLQKMAEENSLDIQFVTFTVDPDVDSPKVLKKYIQHFTENESNWHLLTGYSQKEIERFALEQFQTIVQKPKTSNQVIHGTNFYLIDPNGRLLKEYNFADDSYQEDLLKDMERLTRLDS
>NZ_AP013294.1|WP_041075771.1|3413062_3414478_+|HAMP-domain-containing-histidine-kinase
MKSPTLSKKILIVLLTSIGFTILFSFFFIHYLYSELYLDSIEESIIYQGKRTASHYHYGELSDEIIDKIRWYNIVSEYEIIVVDNLEELSSYFPYKINYETLVDEKDHAQLERGAYVEKKGYVEELNRDILGAIFPIKGEDGLIGFIYIYVPLAAIQDVFRESIPLLIIVGSLFFFVLFLVVNRAWHSLFKPLKDLQQLSYEVSQGNYSNRIETEREDEIGQLTKAFNTMSLSLEEQEERKKEFTSNIVHELRTPLTYISGYTHALKEKIYSSPEEAESYLQTMEKETERLNKLIYDLADLNHLQQDLYTIDWQPIAVAQLLYDTLDLFSIHLKEKKLLLDLYLEEDTILSGDPKRLQQVFYNTLDNAIKYSLHGGRISVTLKEEADSIVFQVTNGGTVIDEEDIGRIGERFFRTDKARNRTTGGTGLGLSIVKEIVRLHGGSFQIASSPDSGTTITIHLPGMNGDEEGVK
>NZ_AP013294.1|WP_041075769.1|3412385_3413060_+|response-regulator-transcription-factor
MKQTTILIIDDEEQMRKLIRTFLEKEGYAVLEASDGIQALSLVEKEEPHLCIVDVMMPYMDGFTFAREVKRISTVPLIFLSAKGEEWDKIQGLKLGGDDYIVKPFLPGELLARVESVLRRTYQQRQSEDVLRAGPLVINQTSHTVTLNGKPLSLTLKEFGVLHLLASNKGRVYSREQLLHLVWGDEHQSSERTVDTHIKTLRLKMGDDGQMIETVWGVGYKFEV
>NZ_AP013294.1|WP_041075767.1|3411466_3412222_-|FixH-family-protein
MKRILGWLLIGMTLAVLAACGKNEEPEVSTEPEEILPIAVELTVTEQVEIGETVKMEALVTQGDEKVEDADKVVFEVWEEGKKDDSVMIDSTNAKEGLYTADTTFDHDGLFHIQVHVDARGMHTMPKKEVTVGGGGNYEAVQEEEAGHEHGHADGFSMHFEKPEAVAAEEEQELIVHLQMDGHPLERANVRYEIWNEGNENAKDWVDAKEIQAGEYAATHTFQEPGTFHIQIHVENEDGLHEHEEHTVEVK
>NZ_AP013294.1|WP_144399734.1|3409507_3411304_-|methyl-accepting-chemotaxis-protein
MRKWIQKVKGMRVVRLKRQSAVTRVEWSFKYRLMTAISSILLVSTTCIGFVTYEKSKENTIDLVSSRLEREVHIINDLAKTLMLAHVRDRGRFMSELEAVVKRQHVSLVQSGYRADMFYLEGEKLIPFSISKNRDLPISPSVLSKIREDRKGVLHETIGGEPYTLSFFEIQELGGEYIIAIPDHDYLAATQQMAVFVFVTIIISLLLGILLISWIIRNMTNPMIQLQQKMRVVREGDLRVDLTAKSNIPEIRSLNKSFQMMIASMSQMLVGVQQTSTRLLNTGQQLQQNSTVLLAKNELVKDIVSELGTVANETVSVSAQQQQAFHHMKESLHGLFGEMEDVSRLSARTEQVANTGEMSVAAAADSMQLFFDSMRQVVQTIGELQGKCESLDQIVNLIAHVTEQTRMLALNAKIEATRAGSAGAGFLVVANEVQRLAEQSNDATEKIKDMLIGMEQSVHDSASNVETMKEKGAVFQIVTTENGQHFQEAAVQIRALNEKLLIMSDHLHTLETAVPLLENVTVQVEQVSLKNKENAVRMLHSFQEQHEAMVQVEKAGLDLAALSDTLRSNAEFFQVPEPQPEHEDVEMAGSIPVPAEVV
>NZ_AP013294.1|WP_041075763.1|3408913_3409459_+|transcriptional-regulator
MDGREKLDKARERIIETIAENIHLYGLTPSSGRQYGAMYFHDEPLTLDEMTEMLGMSKTSMSTSVRALSDLKLVERAWKRGVRKDLYQVKDDWYQSFIDLFSIKWRRAISLHSVAVRRSLKELGELLQDESIDDDLRKSVEKDIAKLEYMRDYYDWLDRLVDAFEDHEIFDLVPIDKNQDK
>NZ_AP013294.1|WP_041075761.1|3407457_3408720_-|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MSDQSLVKKIQVKKITKIFGKNMKRAARMLNEKKSKREILQATGATVGVNDASFDIYEGEIFVIMGLSGSGKSTLVRMLNRLIDPTMGEILLDGEDIVKMNKEQLREVRRNKIGMVFQNFALFPHKTILENTEYGLEIKGVSKEQRREKALESLKLVGLAGYEDQYPKQLSGGMQQRVGLARALANGPDILLMDEAFSALDPLIRKDMQDELLQLHHDMGKTIIFITHDLDEALRIGDRIALMKDGEVVQVGTPEEILMSPSNEYVERFVEDVDLSKVLTAGHIMKKADTVQIDRGPRVALRLMKRLRISSIYVVDSGNRLLGAVTAQDAVQAVETGKTLEEVLITDFPMIPADTVLTDLFDIVSTTAIPVAVIDERRKLEGIIIRGALIGALSGDNQFINNNGTIESAEQVNEEVDGNE
>NZ_AP013294.1|WP_041075759.1|3406613_3407465_-|proline/glycine-betaine-ABC-transporter-permease
MNEFLPRLPFADWIDNGIDWLVSTFGSVFDGVADFLAGIVEGSVEWLNMVPSILLAVLFSLLAWFLSTRRIAIFTLVGLLFIDYLGYWYPMLQMLALVLTSVFFALVIGVPIGIWGSQKRTVRNVVNPVLDLMQTMPAFVYLLPAIFFFNIGVVPGVVASVIFSMPPTIRLTMLGIQQVPKDLIEATEAYGSTTWQRLSKVQIPLAKPTIMAGVNQSIMLSLSMVVIASMVGAPGLGEEVYRAVTQLKTGVGFETGLSIVIVAIILDRITQHAGKKKKGGLTE
>NZ_AP013294.1|WP_041075777.1|3416528_3417593_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MKKSIYGLTLDQLTEWLVEHGQKKFRAAQVWDWLYKKRITDFTDMKNINKDCIQLLDEHFVIETLELAVKQESADGTIKFLFKMQDGNLIETVLMTFPYGHSVCVTTQVGCNIGCSFCASGLLKKNRDLDAGEIVGQIMKVQQHLDTKNNDERVSHIVVMGIGEPFDNYTNLMNFLRVVNDQKGLSIGARHITVSTSGLTPKIREFANENIQINLAVSLHAPNNDLRTRIMKINKAYPIEKLMEAIDYYLETTNRRITFEYILLQDVNDHVAEAQQLAKLLENKRHLSYVNLIPYNPVDEHGQYKRSKPEAIKAFYETLKKKGINCGVRLEQGTDIDAACGQLRSKQIKKEKVK
>NZ_AP013294.1|WP_041075779.1|3417689_3417971_-|hypothetical-protein
MGRDSAILRKAGLPDPGQHIISLEIGHTHMEAGNLKVSKALDVLLMAFVVYLAVVRFREGMLGSGALFTVLAIVYLATFIVRIKNEKKRIDDK
>NZ_AP013294.1|WP_158333769.1|3418281_3418425_-|hypothetical-protein
MLDQAEVKVLKEEIQKLKRDSEKCPAAIKPLIIKDIDLLRKAISSVK
>NZ_AP013294.1|WP_041075781.1|3418555_3419611_-|histidinol-phosphate-transaminase
MTKYWSSMVKRTDPYVPGEQINQKDIIKLNTNENPYPPSPKVLAAIQAEMQQTLQLYPSPTADGLREAIANQNGISKEEVFVGNGSDEVLAFSFMAFFEPGKVIRFPDISYSFYPVYAKIFDISYDEVPVNDDFTLPIEQFYGAEGGVILPNPNAPTSLYAELEDIERIVKNNPDHVVIIDEAYIDFATESAVALIRKYDNLLVVQTTSKSRSLAGLRVGLAMGNPSLIEALIRIKDSFNSYTIDRLAMAGATAAFEDVTYFEETVGKIVATREKTARALGQLGFTILPSQANFVFARHETAAAETLYNQLKEAGILVRYFNKPQIDNYLRITIGTDAQMEKLLETLKQLV
>NZ_AP013294.1|WP_041075783.1|3419603_3420245_-|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE
MTFDSNSLKFDENGLIPAIVQDEQSGNVLMLAYMNKEALQKTLETKETWFFSRSRQELWNKGATSGNKQTVKRLSFDCDQDTILVQVVPQGPACHTGETSCFYTTVFEEEPSIREVVYEVADEIRERKANPVEGSYTSYLFHEGLDKVLKKVGEESTEVVIGAKNHDKEEVTNELADLVYHSLVMMEILDVTIEDVKTILRKRRPKKEVLRND
>NZ_AP013294.1|WP_041075785.1|3420247_3421009_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MTKKKIIACLDVDNRKVVKGKKFLDVQEVADPLTLAKQYVADGVDELVFYDISASTKNRGMFLDLIEEIAKEVPVPFVVGGGIRTIEDVEKILSIGGDKVSINSAALKDPSIIEEAAKKFGSERVMLSMDVSEVAPGKWNVFAKAGMEDTGIDAIEWAKKGEQLGAGELVVNCIDQDGVKDGYNLELNRAMAEAVDIPIIASGGAGKPEHFRDVLTEGKADVALAASVFHFGDINIRELKNYLDEQNIPVRND
>NZ_AP013294.1|WP_041075787.1|3421005_3421719_-|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase
MILFPAIDIRGGKCVRLIQGDYDQEVVYNDSPTEMAKEWQRQGAEFIHVVDLDGAKTGDSLNREAIEEIAKSVEVPVQVGGGIRSMEIVDSHIANGVSRVIIGTAAIQDKQFLKEAVEKYGSKIAVSIDARNGFVATDGWTETSEVKAVDLLAELVEIGVETVVYTDIAKDGMLQGPNFQELDVMNNASTIDIIASGGVSTEEDIRKLREMNMYGAIIGKALYEGKLSLEKVLEESK
>NZ_AP013294.1|WP_041075789.1|3421876_3422461_-|imidazoleglycerol-phosphate-dehydratase-HisB
MRSKTISRETAETSIDMEFAIDGTGKTVIDTGVGFLDHMLTLFTKHGRFDLDVKCNGDIEVDQHHSVEDIGIVLGQAFNASIGTKEGIERYAQAAVPMDEALSTVTIDISGRSFLVFNVEGMKDKVGNFDTELVEEFFHAFTSHAKVTLHINLDYGKNTHHIIESIFKGFGRALRMASAVNPDVKGIPSTKGLL
>NZ_AP013294.1|WP_041075791.1|3422450_3423734_-|histidinol-dehydrogenase
MKIVSWQEFESEKRDSGEQVDLEFDRAVLAIIDQVRENGDQALREYTERYDRVELKDFAVSEEEFAEARELVADDFVSALQNAKQRIAAYHEVQKERSWFINQENGVMLGQKVTPLDSVGIYVPGGKAAYPSTVLMNAIPAKIAGVGRIAMVTPPQSDGKVNPHVLAAAELAGVDVVYKVGGAQAIAALAYGTETIQKVVKITGPGNAFVARAKKWVFGDVAIDMIAGPSEICVVADDKANPVYTAADLLSQAEHDERAAAICVTTSRQFAEELAQEVDRQLAKLDRKEIAGKSIADYGRIVLVDSLREAFDFVNELAPEHLQLMIENANEQLPYIKHAGAIFLGNYSPEALGDYIAGPNHTLPTSGTAAFSSPLGVYDFMKKSSIIQFSQAAFEEVADDIITLATAEQLTGHANSIRVRKVDQHEK
>NZ_AP013294.1|WP_041075794.1|3423730_3424366_-|ATP-phosphoribosyltransferase
MEYLTVAMAKGRTADRAMKFLEKADVRFSEFTDESRKLVIFDDEQNIKLIFVKAVDVPTYVEKGAADVGIVGKDTIMEDPRDVYELLDLGFGKCKLAVAGFPGKEISGMPFLTVASKYPNAAKEYFDRNGIRTEMIKLNGSIELAPLIGMADVIVDIVETGTTLKENGLVVLEEIADISARLIVNKASYATKTERIQQFISDLKMGLEGNS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP013294_1	1.1\|175901\|29\|NZ_AP013294\|CRISPRCasFinder	175901-175929	29	MN692957	Marine virus AFVG_117M60, complete genome	1930-1958	7	0.759
NZ_AP013294_1	1.1\|175901\|29\|NZ_AP013294\|CRISPRCasFinder	175901-175929	29	MN692970	Marine virus AFVG_117M24, complete genome	2024-2052	7	0.759

1. spacer 1.1|175901|29|NZ_AP013294|CRISPRCasFinder matches to MN692957 (Marine virus AFVG_117M60, complete genome) position: , mismatch: 7, identity: 0.759

caaccgctcataaaatccacccaaccgat	CRISPR spacer
gaaccactcataaaatccaccgaagtgga	Protospacer
 ****.*************** ** .*.

2. spacer 1.1|175901|29|NZ_AP013294|CRISPRCasFinder matches to MN692970 (Marine virus AFVG_117M24, complete genome) position: , mismatch: 7, identity: 0.759

caaccgctcataaaatccacccaaccgat	CRISPR spacer
gaaccactcataaaatccaccgaagtgga	Protospacer
 ****.*************** ** .*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

444 : 9563

Staphylococcus_phage(85.71%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041070645.1\|444_1650_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.4e-160	70.3
WP_041070648.1\|2142_3729_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.4e-192	63.0
WP_041070650.1\|3839_4631_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.2e-35	41.1
WP_041070652.1\|4620_5082_-	NUDIX domain-containing protein	A0A2H4PQM4	Staphylococcus_phage	6.3e-16	34.2
WP_041070654.1\|5129_5438_-	hypothetical protein	NA	NA	NA	NA
WP_041070656.1\|5524_5707_-	putative motility protein	NA	NA	NA	NA
WP_041070658.1\|5767_6217_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	8.2e-45	58.9
WP_084212349.1\|6346_6607_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.9e-22	63.5
WP_041070662.1\|6736_7717_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041070664.1\|8090_9563_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.6e-67	32.3

DBSCAN-SWA_2

1519491 : 1527420

Lactococcus_phage(50.0%)

integrase,transposase

attL 1516788:1516802|attR 1529691:1529705

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1516788:1516802	attL	NA	NA	NA	NA
WP_084212407.1\|1519491_1519851_-\|transposase	transposase	NA	NA	NA	NA
WP_084212408.1\|1519968_1520778_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	S5WIU1	Leptospira_phage	6.1e-06	24.2
WP_041076450.1\|1521393_1522617_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	4.0e-49	35.4
WP_041073196.1\|1522618_1523395_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.6e-59	46.3
WP_041073198.1\|1523442_1524162_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.9e-27	35.2
WP_041073200.1\|1524158_1525679_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_144399661.1\|1525850_1526981_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_084212409.1\|1526952_1527420_-\|transposase	transposase family protein	NA	NA	NA	NA
1529691:1529705	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2873361 : 2909955

Clostridium_phage(31.43%)

tail,plate,terminase,portal,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052484056.1\|2873361_2874009_-	hypothetical protein	A0A0U4II26	Bacillus_phage	3.7e-30	38.6
WP_173426019.1\|2874137_2874278_-	hypothetical protein	S6B9W8	Thermus_phage	6.1e-07	59.5
WP_052484057.1\|2874279_2874666_-	hypothetical protein	NA	NA	NA	NA
WP_041075121.1\|2874678_2875623_-	hypothetical protein	NA	NA	NA	NA
WP_052484058.1\|2875622_2876465_-\|tail	phage tail protein	A0A2H4J194	uncultured_Caudovirales_phage	6.1e-41	48.9
WP_041075122.1\|2876479_2877085_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_041075123.1\|2877077_2878157_-\|plate	baseplate J/gp47 family protein	A0A0A8WFK0	Clostridium_phage	3.0e-77	46.3
WP_041075124.1\|2878156_2878567_-	DUF2634 domain-containing protein	A0A0A8WFW6	Clostridium_phage	8.9e-30	52.0
WP_041076879.1\|2878563_2878944_-	DUF2577 domain-containing protein	L0P6Y6	Lactobacillus_phage	1.8e-05	31.7
WP_041075125.1\|2878945_2879914_-	hypothetical protein	H7BVH4	unidentified_phage	6.0e-93	53.7
WP_041075126.1\|2879906_2880572_-	LysM peptidoglycan-binding domain-containing protein	X5J9Z8	Clostridium_phage	4.1e-40	42.4
WP_158333723.1\|2880564_2882766_-	tape measure protein	X5JAB7	Clostridium_phage	3.5e-104	34.9
WP_041076883.1\|2883250_2883616_-	hypothetical protein	S6B1J4	Thermus_phage	2.1e-30	60.2
WP_041075129.1\|2883861_2884290_-\|portal	phage portal protein	X5JAB6	Clostridium_phage	2.2e-31	52.7
WP_052484060.1\|2884348_2884855_-\|tail	phage tail tube protein	A0A0A8WJ62	Clostridium_phage	4.7e-49	59.1
WP_041075130.1\|2884869_2886192_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A8WIF0	Clostridium_phage	1.0e-135	56.4
WP_052484203.1\|2886191_2886371_-	hypothetical protein	NA	NA	NA	NA
WP_041075132.1\|2886405_2886849_-	hypothetical protein	X5JAB5	Clostridium_phage	4.1e-12	35.0
WP_041075133.1\|2886838_2887342_-	HK97 gp10 family phage protein	A0A0A8WFV8	Clostridium_phage	8.9e-32	44.2
WP_144399710.1\|2887341_2887650_-	hypothetical protein	NA	NA	NA	NA
WP_041075135.1\|2887697_2888093_-	hypothetical protein	X5JAJ0	Clostridium_phage	1.5e-21	43.6
WP_041075136.1\|2888098_2888278_-	hypothetical protein	NA	NA	NA	NA
WP_041075137.1\|2888292_2889315_-\|capsid	major capsid protein	S5MA55	Brevibacillus_phage	1.6e-123	64.9
WP_041075138.1\|2889340_2889655_-	hypothetical protein	S5M669	Brevibacillus_phage	1.6e-26	58.7
WP_041075139.1\|2889673_2890264_-	phage scaffolding protein	S5MUG0	Brevibacillus_phage	1.3e-29	42.2
WP_052484061.1\|2890368_2890584_-	hypothetical protein	A0A1L2JY50	Aeribacillus_phage	7.7e-09	47.1
WP_144399711.1\|2890650_2890833_-	hypothetical protein	NA	NA	NA	NA
WP_158333725.1\|2890850_2891021_-	hypothetical protein	NA	NA	NA	NA
WP_041075141.1\|2891017_2892046_-\|head	phage head morphogenesis protein	X5JAI9	Clostridium_phage	1.2e-115	56.8
WP_070098210.1\|2892032_2893547_-\|portal	phage portal protein	S5MNW1	Brevibacillus_phage	1.4e-104	42.2
WP_144399712.1\|2893560_2894811_-\|terminase	PBSX family phage terminase large subunit	A0A0S0KEN9	Bacillus_phage	1.2e-130	54.8
WP_041075143.1\|2894803_2895652_-\|terminase	terminase small subunit	Q5YA77	Bacillus_phage	3.9e-80	64.5
WP_144399713.1\|2895723_2896338_-	MFS transporter	NA	NA	NA	NA
WP_041075145.1\|2896584_2897001_-	hypothetical protein	A0A290FZR5	Caldibacillus_phage	1.6e-34	54.0
WP_041075146.1\|2897017_2897209_-	hypothetical protein	NA	NA	NA	NA
WP_084212487.1\|2897301_2897469_-	DUF3954 domain-containing protein	A0A2P1JTX5	Anoxybacillus_phage	4.0e-05	53.7
WP_041075147.1\|2897542_2897827_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041075148.1\|2897823_2898075_-	IDEAL domain-containing protein	NA	NA	NA	NA
WP_041075149.1\|2898192_2898399_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_144399715.1\|2898448_2898946_-	hypothetical protein	NA	NA	NA	NA
WP_158333727.1\|2899084_2899546_-	Holliday junction resolvase RecU	Q0H273	Geobacillus_phage	2.5e-33	47.9
WP_173426020.1\|2899605_2899773_-	hypothetical protein	NA	NA	NA	NA
WP_041075151.1\|2899938_2900541_-	dUTP diphosphatase	R9TQ23	Paenibacillus_phage	2.4e-39	47.5
WP_158333729.1\|2900531_2900690_-	hypothetical protein	NA	NA	NA	NA
WP_041075152.1\|2900700_2901186_-	hypothetical protein	NA	NA	NA	NA
WP_041075153.1\|2901216_2901696_-	single-stranded DNA-binding protein	A0A290GHL8	Caldibacillus_phage	9.7e-44	55.6
WP_041075154.1\|2901692_2901932_-	hypothetical protein	NA	NA	NA	NA
WP_041075155.1\|2901928_2902111_-	hypothetical protein	NA	NA	NA	NA
WP_158333731.1\|2902107_2902260_-	hypothetical protein	NA	NA	NA	NA
WP_041075156.1\|2902256_2902562_-	hypothetical protein	NA	NA	NA	NA
WP_041075157.1\|2902551_2902824_-	hypothetical protein	NA	NA	NA	NA
WP_041075158.1\|2902929_2903178_-	hypothetical protein	NA	NA	NA	NA
WP_158333733.1\|2903174_2903342_-	hypothetical protein	NA	NA	NA	NA
WP_144399717.1\|2903338_2903491_-	DUF5320 domain-containing protein	NA	NA	NA	NA
WP_041075159.1\|2903483_2904095_-	DUF1642 domain-containing protein	A0A1C8E9B0	Bacillus_phage	3.9e-05	38.7
WP_084212565.1\|2904106_2904817_-	ATP-binding protein	A0A1B0T6C3	Bacillus_phage	1.4e-43	41.4
WP_052484062.1\|2904927_2905791_-	hypothetical protein	U5Q085	Bacillus_phage	1.1e-40	64.1
WP_041075160.1\|2905829_2906630_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A290GJV0	Caldibacillus_phage	3.9e-90	62.7
WP_052484063.1\|2906580_2907507_-	V-type ATPase subunit	A0A2P1JTZ5	Anoxybacillus_phage	5.6e-104	67.2
WP_041075161.1\|2907585_2907792_-	hypothetical protein	NA	NA	NA	NA
WP_158333735.1\|2907788_2907950_-	hypothetical protein	NA	NA	NA	NA
WP_041075162.1\|2907942_2908152_-	hypothetical protein	NA	NA	NA	NA
WP_041075163.1\|2908523_2908802_-	hypothetical protein	NA	NA	NA	NA
WP_041075164.1\|2908798_2909083_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_052484064.1\|2909223_2909955_-	ORF6C domain-containing protein	A0A0A0YSF8	Streptococcus_phage	6.0e-29	31.9

DBSCAN-SWA_4

2950264 : 3011344

Bacteriophage(22.86%)

tail,plate,protease,terminase,portal,integrase,transposase,holin,capsid,tRNA

attL 2965939:2965954|attR 3004443:3004458

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041075204.1\|2950264_2950963_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_041075205.1\|2951119_2951494_-	cytochrome c	NA	NA	NA	NA
WP_052484070.1\|2951720_2952887_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_041075206.1\|2952983_2953523_-	hypothetical protein	NA	NA	NA	NA
WP_041075207.1\|2953657_2954782_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.9e-39	37.9
WP_041075208.1\|2954797_2956630_-	DNA primase	A0A1S5RH70	Helicobacter_phage	7.8e-41	29.6
WP_041075209.1\|2956835_2957648_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_173426021.1\|2957658_2958297_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041075211.1\|2958603_2959983_+\|tRNA	glycine--tRNA ligase	A0A1V0SIF1	Klosneuvirus	3.7e-35	30.2
WP_041075212.1\|2960005_2960791_-	DNA repair protein RecO	NA	NA	NA	NA
WP_041075213.1\|2960820_2961735_-	GTPase Era	NA	NA	NA	NA
WP_041075214.1\|2961709_2962129_-	cytidine deaminase	NA	NA	NA	NA
WP_041076922.1\|2962148_2962499_-	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_041075215.1\|2962509_2962977_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_041075216.1\|2962992_2965119_-	HDIG domain-containing protein	NA	NA	NA	NA
WP_041075217.1\|2965237_2966200_-	PhoH family protein	L7TP00	Rhizobium_phage	1.1e-46	47.1
2965939:2965954	attL	NA	NA	NA	NA
WP_041075218.1\|2966205_2967312_-	sporulation protein YqfD	NA	NA	NA	NA
WP_041075219.1\|2967304_2967559_-	hypothetical protein	NA	NA	NA	NA
WP_041075220.1\|2967609_2968104_-	hypothetical protein	NA	NA	NA	NA
WP_041075221.1\|2968138_2969155_-	flotillin-like protein FloA	NA	NA	NA	NA
WP_041075222.1\|2969154_2970486_-	nodulation protein NfeD	NA	NA	NA	NA
WP_041075223.1\|2970691_2970865_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_041075224.1\|2971001_2971673_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_052483843.1\|2971745_2972033_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_084212371.1\|2972007_2973246_-\|transposase	transposase	NA	NA	NA	NA
WP_041071467.1\|2973373_2974729_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_052483828.1\|2975166_2976453_-	N-acetylmuramoyl-L-alanine amidase	D6QWM8	uncultured_phage	1.5e-54	59.2
WP_041075225.1\|2976449_2976719_-\|holin	holin	A0A0U4JE55	Bacillus_phage	1.5e-17	51.8
WP_144399719.1\|2976723_2977047_-	hypothetical protein	A0A2H4J540	uncultured_Caudovirales_phage	4.9e-07	36.4
WP_158333739.1\|2977150_2977327_-	hypothetical protein	NA	NA	NA	NA
WP_041075227.1\|2977413_2978409_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	2.7e-19	28.2
WP_041075228.1\|2978822_2979050_-	hypothetical protein	NA	NA	NA	NA
WP_041075229.1\|2979112_2979985_-	hypothetical protein	NA	NA	NA	NA
WP_173426019.1\|2980327_2980468_-	hypothetical protein	S6B9W8	Thermus_phage	6.1e-07	59.5
WP_052484057.1\|2980469_2980856_-	hypothetical protein	NA	NA	NA	NA
WP_041075231.1\|2980868_2981813_-	hypothetical protein	NA	NA	NA	NA
WP_041075232.1\|2981812_2982469_-	hypothetical protein	NA	NA	NA	NA
WP_041075233.1\|2982487_2982871_-	hypothetical protein	NA	NA	NA	NA
WP_052484071.1\|2982958_2984005_-\|tail	phage tail protein I	A0A2K9V471	Faecalibacterium_phage	2.4e-18	36.8
WP_041075234.1\|2983997_2985116_-\|plate	baseplate J/gp47 family protein	A0A0C5AEG2	Bacteriophage	2.3e-80	44.1
WP_052484073.1\|2985102_2985408_-	hypothetical protein	NA	NA	NA	NA
WP_052484075.1\|2985412_2986072_-\|tail	phage tail protein	A0A067ZI88	Vibrio_phage	3.3e-10	31.0
WP_052484077.1\|2986077_2986503_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	1.3e-12	36.8
WP_041075235.1\|2986502_2987522_-	hypothetical protein	A0A067ZG47	Vibrio_phage	5.8e-38	31.2
WP_041075236.1\|2987518_2987734_-\|tail	tail protein X	A0A0C5AEF4	Bacteriophage	3.5e-09	45.3
WP_052484079.1\|2987726_2990618_-\|tail	phage tail tape measure protein	A0A1Q1PVX7	Staphylococcus_phage	2.4e-65	46.5
WP_041075237.1\|2990762_2991131_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_041075238.1\|2991146_2991665_-\|tail	phage major tail tube protein	A0A0C5AJ56	Bacteriophage	1.3e-22	34.5
WP_041075239.1\|2991679_2993128_-	hypothetical protein	A0A0C5AEE8	Bacteriophage	4.2e-114	45.4
WP_041075240.1\|2993127_2993439_-	hypothetical protein	A0A067ZI83	Vibrio_phage	4.3e-08	35.1
WP_041075241.1\|2993428_2993914_-	hypothetical protein	NA	NA	NA	NA
WP_052484081.1\|2993917_2994463_-\|tail	phage tail protein	A0A067ZG41	Vibrio_phage	1.0e-17	32.4
WP_041075242.1\|2994474_2994813_-	hypothetical protein	NA	NA	NA	NA
WP_041075243.1\|2994802_2995171_-	hypothetical protein	NA	NA	NA	NA
WP_041075244.1\|2995186_2996212_-\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	4.9e-77	42.1
WP_041075245.1\|2996217_2996586_-	hypothetical protein	NA	NA	NA	NA
WP_070098211.1\|2996587_2997634_-\|protease	Clp protease ClpP	A0A2H4JAJ9	uncultured_Caudovirales_phage	2.2e-56	51.2
WP_041075246.1\|2997620_2999174_-\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	5.9e-159	57.1
WP_052484204.1\|2999189_2999384_-	hypothetical protein	A0A067ZJ01	Vibrio_phage	5.1e-12	55.6
WP_052484084.1\|2999428_3001264_-\|terminase	phage terminase large subunit family protein	A0A0C5ABH4	Bacteriophage	3.6e-171	51.8
WP_041075248.1\|3001190_3001769_-	hypothetical protein	A0A0C5AN04	Bacteriophage	2.3e-15	35.6
WP_041075249.1\|3002401_3002956_-\|integrase	site-specific integrase	D2XR58	Bacillus_phage	6.4e-47	54.1
WP_041075250.1\|3002952_3003396_-	hypothetical protein	Q0H270	Geobacillus_phage	7.6e-27	43.8
WP_173426022.1\|3003409_3003586_-	hypothetical protein	NA	NA	NA	NA
WP_158333741.1\|3003682_3003856_-	hypothetical protein	NA	NA	NA	NA
WP_041075251.1\|3003913_3004150_-	hypothetical protein	NA	NA	NA	NA
WP_041075252.1\|3004170_3004470_-	hypothetical protein	NA	NA	NA	NA
3004443:3004458	attR	NA	NA	NA	NA
WP_041075253.1\|3004506_3004761_-	hypothetical protein	A0A127AWG6	Bacillus_phage	7.7e-08	38.6
WP_052484088.1\|3004800_3005079_-	hypothetical protein	NA	NA	NA	NA
WP_144399720.1\|3005117_3005369_-	hypothetical protein	NA	NA	NA	NA
WP_144399762.1\|3005528_3005777_-	hypothetical protein	D9J0X5	Brochothrix_phage	6.4e-23	67.5
WP_041075255.1\|3005884_3006157_-	hypothetical protein	NA	NA	NA	NA
WP_041075256.1\|3006153_3006429_-	hypothetical protein	NA	NA	NA	NA
WP_052484091.1\|3006515_3007226_-	hypothetical protein	A0A0S2MVI5	Bacillus_phage	8.7e-57	48.7
WP_041075258.1\|3007247_3007652_-	hypothetical protein	A0A1L2JY32	Aeribacillus_phage	8.2e-36	65.5
WP_158333743.1\|3007676_3007817_-	hypothetical protein	NA	NA	NA	NA
WP_144399721.1\|3007833_3007962_-	BH0509 family protein	NA	NA	NA	NA
WP_041075259.1\|3007964_3008432_-	hypothetical protein	NA	NA	NA	NA
WP_041075260.1\|3008434_3009706_-	replicative DNA helicase	Q38152	Bacillus_phage	1.4e-76	38.2
WP_052484092.1\|3009706_3010510_-	conserved phage C-terminal domain-containing protein	A0A2H4JEZ8	uncultured_Caudovirales_phage	3.4e-41	48.4
WP_173426023.1\|3010521_3010677_-	hypothetical protein	NA	NA	NA	NA
WP_041075261.1\|3010660_3011344_-	ORF6N domain-containing protein	A0A0K2CNP0	Brevibacillus_phage	4.9e-33	35.9

DBSCAN-SWA_5

3124760 : 3180533

Streptococcus_phage(33.33%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041075357.1\|3124760_3127406_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	4.4e-162	42.1
WP_084212506.1\|3127874_3128066_+	hypothetical protein	NA	NA	NA	NA
WP_041075358.1\|3128033_3128753_-	hypothetical protein	NA	NA	NA	NA
WP_041075359.1\|3128989_3130282_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_041075360.1\|3130282_3131263_-	porphobilinogen synthase	NA	NA	NA	NA
WP_041075361.1\|3131262_3132024_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_041075362.1\|3132016_3132946_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_041075363.1\|3132961_3133792_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_041075364.1\|3134120_3135479_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_041075365.1\|3135601_3136186_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_041075366.1\|3136185_3138504_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	8.8e-175	42.9
WP_041075367.1\|3138630_3139896_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.0e-145	65.1
WP_041075368.1\|3140110_3141397_-	trigger factor	NA	NA	NA	NA
WP_041075369.1\|3141685_3142660_-	hypothetical protein	NA	NA	NA	NA
WP_041075370.1\|3142856_3143414_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_041075371.1\|3143767_3144865_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.4e-59	37.4
WP_041075372.1\|3144857_3145613_-	GTP cyclohydrolase II	A0A1V0SE20	Indivirus	1.7e-26	43.3
WP_041075373.1\|3146079_3147045_-	D-glycerate dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	7.0e-25	34.8
WP_041075374.1\|3147056_3147752_-	RraA family protein	NA	NA	NA	NA
WP_041075375.1\|3147788_3148553_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_158333755.1\|3148549_3150283_-	FAD-binding protein	NA	NA	NA	NA
WP_158333757.1\|3150297_3151893_-	acyl CoA:acetate/3-ketoacid CoA transferase	NA	NA	NA	NA
WP_041075377.1\|3152039_3153179_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_041075378.1\|3153216_3154677_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_041075379.1\|3154688_3155858_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_041074262.1\|3156457_3157693_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	1.0e-68	43.6
WP_084212571.1\|3157965_3158958_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_041075381.1\|3159266_3159851_+	TRAP transporter small permease	NA	NA	NA	NA
WP_041075382.1\|3159851_3161132_+	TRAP transporter large permease	NA	NA	NA	NA
WP_052484107.1\|3161166_3162315_+	glycerate kinase	W6LM47	Streptococcus_phage	5.2e-43	36.2
WP_052484108.1\|3162513_3163170_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_041076997.1\|3163490_3164852_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	5.6e-121	51.2
WP_052484109.1\|3165552_3167232_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_041075383.1\|3167386_3168169_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_041072671.1\|3168339_3169455_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_041075384.1\|3169633_3170389_-	response regulator transcription factor	NA	NA	NA	NA
WP_041075385.1\|3170600_3171926_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_041075386.1\|3171963_3172323_+	cupin domain-containing protein	NA	NA	NA	NA
WP_041075387.1\|3172423_3173353_+	DMT family transporter	NA	NA	NA	NA
WP_041075388.1\|3173406_3174885_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_041072671.1\|3175050_3176166_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_041075389.1\|3176874_3177414_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_052484110.1\|3177544_3178675_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_052483823.1\|3179018_3180533_-\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP013294

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection