CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007152	Marinobacter salarius strain R9SW1 chromosome, complete genome	3 crisprs	DEDDh,csa3,DinG,WYL,cas3	0	1	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007152_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007152_1

1502069-1502158

Orphan

Consensus_repeat	Method
CAGGGATTCGAGTTTACGGATATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007152_1

>merge|NZ_CP007152|1|1502069-1502158|CRISPRCasFinder
CAGGGATTCGAGTTTACGGATATCAGATGTGGAAAGGCAGGCTTTTTCCTGCTGCAGGACGTCCGCCAGGGATTCGAGTTGACGGATATC

>NZ_CP007152|1|1|1502069-1502158|CRISPRCasFinder
CAGGGATTCGAGTTTACGGATATC	AGATGTGGAAAGGCAGGCTTTTTCCTGCTGCAGGACGTCCGC
CAGGGATTCGAGTTGACGGATATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007152.1\|WP_036208003.1\|1502710_1503415_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|180794
NZ_CP007152.1\|WP_036208006.1\|1502204_1502531_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP007152.1\|WP_036207996.1\|1504586_1505414_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NZ_CP007152.1\|WP_036207982.1\|1511588_1511864_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|224174
NZ_CP007152.1\|WP_036207984.1\|1510629_1511577_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP007152.1\|WP_036207980.1\|1511895_1512495_-\|DUF938-domain-containing-protein	unknown	unknown	gnl\|CDD\|253548
NZ_CP007152.1\|WP_041333235.1\|1508082_1509144_-\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_CP007152.1\|WP_036208061.1\|1478401_1479841_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP007152.1\|WP_036207976.1\|1512706_1514314_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP007152.1\|WP_041333225.1\|1484307_1484970_+\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|377219
NZ_CP007152.1\|WP_174447630.1\|1482234_1483449_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183401
NZ_CP007152.1\|WP_041333228.1\|1485006_1485981_+\|23S-rRNA-pseudouridine(2605)-synthase-RluB	unknown	unknown	gnl\|CDD\|182659
NZ_CP007152.1\|WP_041333222.1\|1480016_1481183_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP007152.1\|WP_036208055.1\|1481182_1482055_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP007152.1\|WP_036208016.1\|1500088_1500706_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP007152.1\|WP_036208476.1\|1514413_1514665_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377710
NZ_CP007152.1\|WP_036208039.1\|1487181_1487865_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP007152.1\|WP_036208013.1\|1500947_1501685_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237974
NZ_CP007152.1\|WP_036207985.1\|1509756_1510287_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_CP007152.1\|WP_041333231.1\|1494678_1497429_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007152.1\|WP_036208006.1\|1502204_1502531_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	3.14995e-18
NZ_CP007152.1\|WP_036207996.1\|1504586_1505414_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	1.38646e-95
NZ_CP007152.1\|WP_036207982.1\|1511588_1511864_-\|acylphosphatase	gnl\|CDD\|224174	COG1254, AcyP, Acylphosphatases [Energy production and conversion].	1.04778e-31
NZ_CP007152.1\|WP_036207984.1\|1510629_1511577_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	4.08058e-42
NZ_CP007152.1\|WP_036208016.1\|1500088_1500706_-\|peptidylprolyl-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	1.38498e-67
NZ_CP007152.1\|WP_041333235.1\|1508082_1509144_-\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	8.23556e-95
NZ_CP007152.1\|WP_036208061.1\|1478401_1479841_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP007152.1\|WP_036207976.1\|1512706_1514314_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	7.76133e-48
NZ_CP007152.1\|WP_041333225.1\|1484307_1484970_+\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|377219	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB. This is a family of prokaryotic proteins that form one of the subunits, ScpB, of the segregation and condensation complex, condensin, that plays a key role in the maintenance of the chromosome. In prokaryotes the complex consists of three proteins, SMC, ScpA (kleisin) and ScpB. ScpB dimerizes and binds to ScpA. As originally predicted, ScpB is structurally a winged-helix at both its N- and C-terminal halves. IN Bacillus subtilis,one Smc dimer is bridged by a single ScpAB to generate asymmetric tripartite rings analogous to eukaryotic SMC complex ring-shaped assemblies.	1.94256e-63
NZ_CP007152.1\|WP_174447630.1\|1482234_1483449_+\|tryptophan--tRNA-ligase	gnl\|CDD\|183401	PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.	0
NZ_CP007152.1\|WP_041333228.1\|1485006_1485981_+\|23S-rRNA-pseudouridine(2605)-synthase-RluB	gnl\|CDD\|182659	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB.	1.29272e-110
NZ_CP007152.1\|WP_041333222.1\|1480016_1481183_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP007152.1\|WP_036208055.1\|1481182_1482055_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP007152.1\|WP_036207980.1\|1511895_1512495_-\|DUF938-domain-containing-protein	gnl\|CDD\|253548	pfam06080, DUF938, Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.	1.11433e-69
NZ_CP007152.1\|WP_036208003.1\|1502710_1503415_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|180794	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA.	6.16717e-60
NZ_CP007152.1\|WP_036208476.1\|1514413_1514665_+\|hypothetical-protein	gnl\|CDD\|377710	pfam06794, UPF0270, Uncharacterized protein family (UPF0270).	0.00103815
NZ_CP007152.1\|WP_036208039.1\|1487181_1487865_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.3766e-27
NZ_CP007152.1\|WP_036208013.1\|1500947_1501685_+\|hypothetical-protein	gnl\|CDD\|237974	PRK15489, nfrB, glycosyl transferase family protein.	2.09295e-06
NZ_CP007152.1\|WP_036207985.1\|1509756_1510287_-\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	1.96228e-52

>NZ_CP007152.1|WP_036208013.1|1500947_1501685_+|hypothetical-protein
MKIRQGFEEKSRLGRLLINRGYLSEIQLEEGLRLQHETGQRLGEVFIQSGWITERELHRVLKHQSRYRNAAALVTMAVLPFQPLVSFAAGSTTNDSRDVTDAAQLYERAGLAPLNDDEMAGVSGQGDQSLLDRIATVSAMTGSNDGTGEVDPDVIEGLKLTANIFVPVLNFLDSDLTISGVHYRDDVPRYTVRDDGGLTLAFPERIEQIRMDNIRVSGSQGPSMGNIALDNIRFHPDSQMTIYTR
>NZ_CP007152.1|WP_036208016.1|1500088_1500706_-|peptidylprolyl-isomerase
MTNFVKPFRYVMQIALSVTFMLGIGNCLAAEGQQNELPQVIIETSEGAIEVTLRPDIAPETVENFITYAKNGFYEGTLFHRVIPGFMIQGGGFDQDLNQKQTRSPIRNEARPTAKNLRGTIAMARTSSPDSATSQFFINLTDNDFLNAGVRGPGYAVFGKVTGGMGVVDAIASKKTVRSRGMADVPQEPVIIRSVSVRQTDTAAE
>NZ_CP007152.1|WP_041333231.1|1494678_1497429_+|hypothetical-protein
MRADSLSCLSCALRCFPRGGCLALLSLILVVIGGCKTEQDAEDPYILGTPPDEAYLGVEYAYNFGAFDSDDILDYSLTNAPSWLALEDTSNKARQGVIMRGVPGLTGGSRGRDDLGTTENITLVGNDGRAAGTQPFDIEVRENVLSLAIDDFTEGEAFEAPEERDNRCEAPEIGEIGRQTYEVNEYDDDGAVVKTVQRTSATYPVLVRVLLDQPSVTRVSVAFELDSSFNPQRCDEDIDPPHQRCENGTANDNEAIIGKDIVGLGTQSEPTLPVPSYLQYQPDDDGFLSKGVITLEPGITECYIRLEVIEDTEAEPLETLNIRLTEVRSGLAGLGSSNSGVRELLRIADNEPTVRLETGAGGTRDALNVGDVREYVALISGERAGAYSVKLGEDDDSDVILGEDFLVEVRDGNGEWVEGDLLTFAEGVEEMRFRIRIPDDYTNGQLENDRFLLLGLDERYQSGRENFAASADADKLRVNINELTSPIEVGNSAAFVPTDTAFGHNGRLFIAGYRIDDGDRPWVRIVTQKGEVTEQPLSEAAIAQGGEPVIGFVERNFKEGDDDVTRYEFVVSFGSEQTPDGAPGGNGVDVHTLLYFFDTAQDPDSYVPVWSIVTGTSGDDFPRWTGIDEDGGYVVNAGETDGQWPNENAAGGVDSFLQRIDTTVDGNSVVPVVAWTRQVGSAGHDESVVGGSTSTSSPLLIGDSSGAVSGQPQLGGKDAFFYIASSADSTINVRQRGTSGNEDLSDGIYGTNNVWLVGQGTGNYRVESGDGNRSLQRRQINSQAGFALSYTALGDVTRAFTFNDTDDTSTESLRAVRTYDRDILVAGSTNGNFSESEGNSQTHPILARISLEENSDDDTDSSREWRTQLPLVGAEGEIERLENYRDDEITALVKIVSGASETWEVRLFTGEGLPLH
>NZ_CP007152.1|WP_036208039.1|1487181_1487865_+|GntR-family-transcriptional-regulator
MRFQAPESLSEQIAQHLGQRIVTGDLRPGERIQELKVAGELNVSRGSVREALLILQRRHLVDIFPRRGAVVSRLTPELVNSLYDIYIDLLCMLGRKVLERWSGSELSGVMGQVRELQAVIDALNSSGGDAAEQVIDAGFGVMRYAYGLVENPFLEETLENFRPAISRTYFVALENFRDELAETGRFFRQLADAAVRDDAAGLETAICEFGEHQREQVLSILREEVSA
>NZ_CP007152.1|WP_041333228.1|1485006_1485981_+|23S-rRNA-pseudouridine(2605)-synthase-RluB
MAANRPRKPEQRQPDETTVSGPERIQKLLARAGVGSRREVESWIEAGRLSINGNPVEPGQKVTVDDRIELDGKRLDIAAGAEVVRRVLIYNKPEGEVTTRRDPEGRPTVFDSLPRLRDHRWIAIGRLDINTTGLVLFTTDGELANRLMHPSRQIDREYAVRVFGEVDEAMIKRLSEGVLLDDGMAKFSDISEAGGKGINQWFHVTLLEGRNREVRRLWESQGVRVSRLKRVRYGPIFLPSRLTVGKWEELDQKAVDSLSKAVDLKPVDIPAKTPSEQKTLDRKRRKQAGAGPRKSGGARWQVDSTGPSTGRKSSGKPPAKSGKR
>NZ_CP007152.1|WP_041333225.1|1484307_1484970_+|SMC-Scp-complex-subunit-ScpB
MNEDNLRKIQAITEAALLAAGKPLSVDQLRDLFEEGERPARQIMEHVLVLLEQSCQGRGFELKKTASGYRLQVREEFAPWVGRLFEEKPQRYSRALLETLALVAYRQPITRGEIEDIRGVTVSSNIVRTLLEREWVRVVGHRDVPGRPAMYATTRQFLDYFNLEGLDQMPPLSEIRDLEEIGREIEKNMQAEIEFESPARNTGDDGDDSNPDNAPGQTLH
>NZ_CP007152.1|WP_174447630.1|1482234_1483449_+|tryptophan--tRNA-ligase
MSSVDSQQRILSGMRPTGKLHLGHYHGVLKNWVKLQHEFECFFFVADWHALTTNYDDPSGIEDSVWDMVIDWLAAGVNPGSSTMFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLREKDLATYGFLGYPLLQSADILMYRAGRVPVGADQVSHVEITREVARRFNHIYGREPGFEEQAEGAIVKMGKKNAKLYRTLKKRYQEEGDMEALETARALLKEQQNISLGDRERLYGYIEGGGKVILPEPQPLLTPESKMPGLDGQKMSKSYNNYIGLREEPDSVAQKIRTMQTDPQRVRRTDPGEPEKCPVWGLHQVYSDADTQEWVQTGCRSAGIGCLECKKPLIDSIIEEQRPLHERAREYEGNPDLVHAIIEEGCEHARDAARDTLEEVRTAMGLNYR
>NZ_CP007152.1|WP_036208055.1|1481182_1482055_+|succinate--CoA-ligase-subunit-alpha
MSILINKDTKVICQGFTGAQGTFHSEQAIEYGTKMVGGVSPGKGGTEHLGLPVFNTVREAVEKTGAEATVIYVPAPFCKDAIVEAADAGIQLIVCITEGIPTIDMLYAKEYVDRKGVRMIGPNCPGVITPGESKIGIMPGHIHKPGKVGIVSRSGTLTYEAVKQTTDFGYGQSTCVGIGGDPIPGSNFIDILQLLQDDPQTEAIVMIGEIGGTAEEEAAAFIKDNVSKPVVSYIAGVTAPPGKRMGHAGAIISGGKGTADEKFAALNDAGVKTVRSLAEIGKALKEVTGW
>NZ_CP007152.1|WP_041333222.1|1480016_1481183_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNLHEYQGKQLFAEYGLPVSKGIACDTPKDAVAAADEIGGDAWVVKAQVHAGGRGKAGGVKLVKSKDDIRAFAESWLGKNLVTYQTDENGQPVSKILVESLTDIDQELYLGAVVDRGTRRIVFMASTEGGVEIEKVAEETPEKILKAEVDPLVGAQPFQGRELAFKLGLEGKQIGQFTKIFLGLAKLFEECDLALVEINPLVITPAGDLHCLDAKIGVDGNALYRQKKIHEMHDPSQEDSREAEAAKWELNYVALDGNIGCMVNGAGLAMGTMDIIKLSGGQPANFLDVGGGATKERVSEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKDVGVKVPVVVRLEGNNAEKGTKVLADSGLNIIAATSLSNAAEQVVKAAGGK
>NZ_CP007152.1|WP_036208061.1|1478401_1479841_+|dihydrolipoyl-dehydrogenase
MSDKYDVIVIGAGPGGYVAAIKAAQLGLKTACIESWTDKEGKNRLGGTCLNVGCIPSKALLEISHKYEEASHDFAEQGIIAKEVGFDIAKMMKRKEGIVDQLTGGIGGLFKSNGVTPIYGHGKLLANRNVEVTDKDGKKKTYEAENVIIATGSRPIQIPPAPFDGTHIVDSEGALEFTEVPKRLGVIGAGVIGLELGSVWARLGAEVTVLEAVDTFLPVVDQQVAKDALKQFQKQGLNVVLGARMTGAEVKRKLVNVTYEDSKGKQEAKFDKLIVAVGRRPYTDNLLSEDSGVKLDERGFIFVDDNCKTEAPGVWAVGDVVRGPMLAHKASEEGVMVAERIAGHKPQVNYDCIPNVIYTSPEVAWVGKTEQEMKAEGEEYNVGTFPFAANGRAMAANAASGMVKIIADAKTDRIVGFHVVGPQASEIVAQGVIAMEFGSSAEDLALTCFAHPTLSESVHEAALGVAGGAIHIANRRKKK
>NZ_CP007152.1|WP_036208006.1|1502204_1502531_-|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSVDFNGIGPGQVNTQKTTADKSSATQSTQPSTAEQAKTQAQGARGENVNLSSQAKNLKQLEQKLGSYPEMDDDRIEQIRSALESGSYKVDAEKLAQKMLEMDESIFG
>NZ_CP007152.1|WP_036208003.1|1502710_1503415_-|flagellar-basal-body-P-ring-formation-protein-FlgA
MRITNFAIILLFTVTAGPAMASTTTSEQIQSSAEQFLEAFSEAQANEGFTVSHDTGQLDARLSLATCDTPLSVSFSGDPWRTTQPSLLVSCEGERPWRMFLPVSVTITGEAMVAARPLGRGERLTKAAIQSDNVVVNSIRRGAITNVDQLVGMEMRRGVNAGTVFTPDLVLAPAAIERGDHVIISARSGNFSVNSRGKALASAGIGEQVLVENLSSSRTVRARVTAPGHVEIPM
>NZ_CP007152.1|WP_036207996.1|1504586_1505414_+|protein-glutamate-O-methyltransferase-CheR
MKAEITPQEYEAFKSFLQDACGILLGENKQYLVKSRLRRIMEENELRTLGDLLDRVKRTGRSSLKEVVIDAMTTNETLWFRDNHPFRILQEKLLPEFGDRKSAQSLRIWSAACSTGQEPYSVAMIIEEFRRQRPGRLRDVKITATDISKSVLEVARRGEYEMIAIGRGLSPERQKQFFTPAMNGSWQIRPQIKSMVEFRELNLLERYMLGKFDIVMCRNVLIYFSAELKKDILTRIHATLNPGGYLILGASESLNGLPHLYEMVQCHPGIIYRKK
>NZ_CP007152.1|WP_041333235.1|1508082_1509144_-|Glu/Leu/Phe/Val-dehydrogenase
MTVFTHPEFDHHEHLTFCCDPETGLRAIIAVHNTSRGPALGGCRMYPYASDDEALTDVLRLSRGMTYKSALANLDLGGGKSVIIGDPRQHKTEALLESMGRFLEQLGGLYIAAEDSGTSVADLQVMGRKTSNVAGISERPGFDGRPSNGDPSPATAWGTFVGINAAVKHKLGRSDLEGLNVAVQGIGNVGYRLARHLKEAGAKLWVYDVHQDQMDRAVAELGATPATADEILYLPVDVVAPCAMGAVLNDHSIRKLQATIVAGAANNQLATPAHDQALFERGVLYAPDFVINAGGIIDVCYERKGPDPQAVRKHVDSIANTLEEIFQRSDRDALPTGQIADQLAEERFRHKSR
>NZ_CP007152.1|WP_036207985.1|1509756_1510287_-|isochorismatase-family-protein
MMMKADESTLVLIDLQKKLMPVISHGNLMLAESVRLAQIAKLLDVPVIATEQIPEKLGHNDEQISALADQTLSKTHFDACGGGLVEAIADNRKQVVIGGCEAHVCLLQTALSLLAAGFRVWVVENATGSRHDNDRDAALERMQQAGAVIVTLEMVAFEWMRDCEHPRFREVQKLIK
>NZ_CP007152.1|WP_036207984.1|1510629_1511577_-|AEC-family-transporter
MTLLGTFLHTLETTLPVFAMVFIGLGLKRLGWIDTNFINTASALVFRATLPTLVFLSIVRADLDTTLNPALLGFFVAATLASFLFCWLWAIRAAPTIDRGVYVQGAFRGNCGIVGLALAASLYGDFGLSAGGLLLGVVIISYNALSVVVLTAYQPGQTASWGRILGDIGRNPLILAVVIAVPFAWSGLQLPNWLMTSGDYFASLTLPLALMCIGGTLSLSAMRTDRKLAISASVMKMVTLPVLCTFAAWLAGFEGRELGLMFLFFASPTAAASFVMVKALGGNDRLAANIVALTTLMASVTVTAGVFVLRTAGVA
>NZ_CP007152.1|WP_036207982.1|1511588_1511864_-|acylphosphatase
MSHQRLTMLISGKVQGVCYRASAADMANSLGVTGYARNLPDGRVEIVAEGSPASLVSLRQWCRDGPPSAIVDKINTTEDSATGEFTNFGVR
>NZ_CP007152.1|WP_036207980.1|1511895_1512495_-|DUF938-domain-containing-protein
MVHSKPFSQACVNNRQPILECIKTVFTEPATILEIGTGTGQHAVYFAAELPHLTWQPSDRPGGADHSLGWIQEADLANIRTPLELDVSLGSWPVDTIDGAYSANTAHIMSWEEVEAMFAGLAKRLIAGGLFCLYGPFNYEGQFTSDSNRQFDHHLRSQAPHMGIRNMDDMLELAGRVRFGLESDFEMPANNRLLVWRKL
>NZ_CP007152.1|WP_036207976.1|1512706_1514314_+|methyl-accepting-chemotaxis-protein
MLRTVRSRILFFSFLSVFALAALAALSSSIMTRAESASEALVRESLMESWLLEDLEQDHRRLQDLAYKIKAQLMLWDEIDAEFQALTEVLPEHWRAIEDNAGLSEWATDNRALFESVLALIESMRPGIEGRSYYRVGQVVDFDLFPALGPMLTAINNRKEASRNIIEVRSQDLLAFLDAQKIWLLAGSAVFLMSVVLMTLWLRRSVIGRLQLLESGLREMDETSDLSRRPVITGHDEVAGVTRALVGLVSRFELFIGEVRTAAHSINDRSTSLDSQAEDVQASTDTTRRQIHDVSQSMAAIANQASAIDLATENSATTVRDAVAANAVVQEGLRNSEQAAEHTVEVIGRVSLSIQALSESSGKIESVIGVIADIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRTLSKRTSDSTREIRQWVTDLVTGVSGVEDLLDEMRDAGGMNRRNLDALKDHLERLASQFTELELRSAEIGDAVAVQREEIDRVGRRSRALDDSSGSLITSVDNTRQISEYLRQESVTMRQLISRFKAA
>NZ_CP007152.1|WP_036208476.1|1514413_1514665_+|hypothetical-protein
MTDEAGHEPQPDPREEKFVVDVGLLSEDQLDGLVDEYCTRYHGLNDTENPMAERERVKSAARRGDLVVWFDPVENTASLGVPR

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Crispr_ID: NZ_CP007152_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007152_2

3771283-3771384

Orphan

Consensus_repeat	Method
GGATGTATTCACAGCGTGTTTTGGAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007152_2

>merge|NZ_CP007152|2|3771283-3771384|CRISPRCasFinder
GGATGTATTCACAGCGTGTTTTGGAAAGCCGAACCACAGGGTACGCGGTCGGCGAACGAGAGCGGAGCGCACAGGGATGTATTCACAGCGTGTTTCGGAAAG

>NZ_CP007152|2|2|3771283-3771384|CRISPRCasFinder
GGATGTATTCACAGCGTGTTTTGGAAAG	CCGAACCACAGGGTACGCGGTCGGCGAACGAGAGCGGAGCGCACAG
GGATGTATTCACAGCGTGTTTCGGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007152.1\|WP_007155058.1\|3768492_3768984_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP007152.1\|WP_144402220.1\|3782428_3784174_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_041335410.1\|3754786_3755359_-\|GspH/FimT-family-pseudopilin	unknown	unknown	gnl\|CDD\|227305
NZ_CP007152.1\|WP_041335412.1\|3758652_3760305_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP007152.1\|WP_036203682.1\|3761322_3762300_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP007152.1\|WP_052479562.1\|3785258_3786257_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_041335423.1\|3780961_3781576_+\|DUF4123-domain-containing-protein	unknown	unknown	gnl\|CDD\|379225
NZ_CP007152.1\|WP_036211226.1\|3773007_3773661_+\|type-VI-secretion-system-associated-protein-TagO	unknown	unknown	gnl\|CDD\|378637
NZ_CP007152.1\|WP_052479561.1\|3754144_3754630_-\|GspH/FimT-family-pseudopilin	unknown	unknown	gnl\|CDD\|227305
NZ_CP007152.1\|WP_041335425.1\|3781572_3781953_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_144402221.1\|3784230_3784671_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_041335419.1\|3771445_3773011_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP007152.1\|WP_041335415.1\|3762289_3763033_+\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP007152.1\|WP_041335428.1\|3782024_3782351_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_041335418.1\|3770158_3771010_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NZ_CP007152.1\|WP_041335440.1\|3786428_3786632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_052479560.1\|3753653_3754136_-\|type-IV-pilus-modification-protein-PilV	unknown	unknown	gnl\|CDD\|131575
NZ_CP007152.1\|WP_041336829.1\|3760349_3761186_-\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP007152.1\|WP_041335437.1\|3784652_3785252_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_041335408.1\|3752523_3753651_-\|PilW-family-protein	unknown	unknown	gnl\|CDD\|379761

Protein	Function_ID	Function_description	E-value
NZ_CP007152.1\|WP_007155058.1\|3768492_3768984_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.27459e-92
NZ_CP007152.1\|WP_041335410.1\|3754786_3755359_-\|GspH/FimT-family-pseudopilin	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	2.18017e-17
NZ_CP007152.1\|WP_041335412.1\|3758652_3760305_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP007152.1\|WP_036203682.1\|3761322_3762300_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	4.20569e-152
NZ_CP007152.1\|WP_041335423.1\|3780961_3781576_+\|DUF4123-domain-containing-protein	gnl\|CDD\|379225	pfam13503, DUF4123, Domain of unknown function (DUF4123). This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.	1.58761e-15
NZ_CP007152.1\|WP_036211226.1\|3773007_3773661_+\|type-VI-secretion-system-associated-protein-TagO	gnl\|CDD\|378637	pfam11319, VasI, Type VI secretion system VasI, EvfG, VC_A0118. VasI is a family of Gram-negative proteins that form part of the pathogenicity apparatus for bacteria-to-bacteria attack. The exact function of this component is not known.	4.09798e-62
NZ_CP007152.1\|WP_052479561.1\|3754144_3754630_-\|GspH/FimT-family-pseudopilin	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	5.91009e-23
NZ_CP007152.1\|WP_041335419.1\|3771445_3773011_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	2.40969e-125
NZ_CP007152.1\|WP_041335415.1\|3762289_3763033_+\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	8.9662e-120
NZ_CP007152.1\|WP_041335418.1\|3770158_3771010_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	1.75273e-66
NZ_CP007152.1\|WP_052479560.1\|3753653_3754136_-\|type-IV-pilus-modification-protein-PilV	gnl\|CDD\|131575	TIGR02523, probable_type-4_fimbrial_biogenesis_protein, type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc. [Cell envelope, Surface structures, Protein fate, Protein modification and repair].	1.18643e-20
NZ_CP007152.1\|WP_041336829.1\|3760349_3761186_-\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	1.38096e-85
NZ_CP007152.1\|WP_041335408.1\|3752523_3753651_-\|PilW-family-protein	gnl\|CDD\|379761	pfam16074, PilW, Type IV Pilus-assembly protein W. PilW is a family of putative type IV pilus-assembly proteins. PilW is one of the component proteins of the pilus biogenesis process whereby pilus fibers are assembled in the periplasm, emerge onto the cell surface and are there stabilized, to allow bacterial attachment to host cells. PilW is an outer-membrane protein necessary for both the functionality of fibers and their stabilisation.	4.30789e-22

>NZ_CP007152.1|WP_041335418.1|3770158_3771010_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MTDEKKQAETQAEKKDVRGRSDASGHEHDIESGEVVEEELVEGAPVRRKGIYLLPNALTTASLFSGFYAIVSAANGVFDNAAIAIFVSMILDGLDGRVARLTNTQSKFGEEYDSLADMVAFGVAPGMVAFFWSLNSLGQVGWAITFIYVAGAALRLARFNTQIGSMDKKFFVGLPSPAAAACVAGLVWCFHAMEPASWLTLMTIIVVGGCGVLMVSNILYKSFKDLDMRGRVPFAAILLVVLMFVVVALDPATVLFSGFLVYALSGPVFALFRKSRRSAGESA
>NZ_CP007152.1|WP_007155058.1|3768492_3768984_+|acetolactate-synthase-small-subunit
MRRIISVLLENEPGALSRVVGLFSQRNYNIETLTVAPTEDETLSRLTVTTTGSDKVIEQITKQLNKLIEVVKLVDLTEGSHIERELMLVKLKATGSQRAEIKRTVDIFRGQIVDVTSSVYTVQLAGASEKLDGFIQAVGTSGVLEVVRSGVSGIARGEKVLSL
>NZ_CP007152.1|WP_041335415.1|3762289_3763033_+|peptidoglycan-editing-factor-PgeF
MTSELPVIVPDWPVPSWVHAACTTRMGGVSQAPWQSLNLGTHVGDHPDDVAKNRSLLGQWAEPGAQSFGWLNQVHGTDVVELPQSGAVTADASVTSQPGVACVVMTADCLPVLFCNPASGQVAAAHAGWRGLCGGVLERTVEYLGNPAAVLAWLGPAIGPEQFEVGPEVREAFLMSDSQSGDAFISSPRNPTHYLADIYELARQRLAMAGVLQVYGGEFCTVTDRERFFSYRRDGQTGRMASLIFIS
>NZ_CP007152.1|WP_036203682.1|3761322_3762300_+|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSSENRIIASFSIPPEHSDRRLDQAAAELMPEHSRSRLQGWIKSGALTVNGKTCKPRDKVMLGDRLDLDAEPEAQVSWEAESIDLDIVYEDEHLLVINKPAGLVVHPAAGHADGTLVNALLNHAPEVENLPRAGIVHRLDKDTSGIMVVARSLIAHTSLVDQLQTRTMGREYEAIVVGTLTGGSTVDAPIGRHPRERKKMAVVPTGKPAVTHYRLVERFAAHTHVRCKLESGRTHQIRVHMAHVKHPLVGDPQYGGRLRLPKGTTDELRDVLASFQRQALHARQLTLEHPQTGEILTWEVPLPDDIEGLLAALRKHVKELENHDV
>NZ_CP007152.1|WP_041336829.1|3760349_3761186_-|outer-membrane-protein-assembly-factor-BamD
MRSVVRLLLVTTAALFISACASNDKQEEVLPEQTYYENARDAMNSGNFNEAEQNLDYLETYYPFGRYAEQAQLDLIYARYQNLDLEGARAAADRFLRLNPQSDHADYALYMRGLASYNLDIGLAARYFPVDVSARDPGEQRQAFRDFSELLNRYPSSEYAPDARQRMIAIRNRLAELELYAARYYISREAYIAANNRARYIIENYSTTPSVEEALIILAETFRFMDLKKGATDAVAMLKENFPDSAAFNENGEFQPDILKREDRSLSSVVTFGLMGDE
>NZ_CP007152.1|WP_041335412.1|3758652_3760305_+|NAD+-synthase
MSVQKDGQGPGKLRVVMAQLDFLVGDIPGNTQKVIEATRRAEQEHQADLVVFPELCLTGYPPEDLLLRPSMDVRVADALETLRGEHLGPAIIVGAPIREGALLYNAAVAIELGNITGRYFKRFPPNYQVFDEKRYFANGVDTLVMDIKGVPVGITICEDIWSEGPVEDAAAAGARLVVNLNASPYDIDKQVRRKALVERKAFENRVSIVYVNLIGGQDELVFDGGSVVYDHSGVLAAEAPQFSEGLYPVDFVCEHHCQPIPQPAVAEPSLEENVYKALVLGVRDYVNKNGFKSVVLGLSGGIDSAVTLAVAADALGADRVRAVMMPFRYTSGMSIEDAEAEAVALGVQYDVFSIEPMYDAFMKTLAAPFEGTQPDTTEENLQARLRGVLLMSLSNKFGSLVLTTGNKSEMAVGYSTLYGDMAGGFDVLKDVPKTLVFRLAWYRNSVSQVIPERVITRPPSAELAPDQKDEDSLPGYDVLDQILNLYVERDLSADAIVAQGFDRADVDRVVRLVDINEYKRRQAPIGVRITERGFGKDRRYPITNGWKSGK
>NZ_CP007152.1|WP_041335410.1|3754786_3755359_-|GspH/FimT-family-pseudopilin
MRYPARTRGFTLVELILTLALVAMLAGIASTSWTRLISSTRHTDVINDTRRMFAVARSYAVHQKTLTTVCPLSPALRCTDDWNNAVSVFPDRNNDKRPDAGKVHRVFTLTRGQSSLYSRTAGRGYFQLSAKGMSHGTMGSLVACSASTNGRFDMSYLALNIGGRIRTLHDEDGDGEIRLPWGTTITCPGP
>NZ_CP007152.1|WP_052479561.1|3754144_3754630_-|GspH/FimT-family-pseudopilin
MLKRTAGFTLIELLITMVILAIIATVALPGFGRLIESNRLVTGTNLLVSSIKLARTEAIKRGTNVTFSTDGGLGGGWCVHEGDDAGDCTNDQIRGFESPGNLTFTESVGDLVFDRRGFLVPQTAQTFTVAPVGCTSGDISFRRIRVSPVGRTEVDDGEVCP
>NZ_CP007152.1|WP_052479560.1|3753653_3754136_-|type-IV-pilus-modification-protein-PilV
MTQTSKHRSGLASPRHQSGLGMIEILITVLVLAIGILGVASTQVVSLQMNSQSQSRSQAVLLAEDLLDRIRANSDNPGDYALAQDDAQGADGGDCATSFVPANATVAANDIAAWENSLACLLPEAERTVAVDPLTNVVTVTIDWNQNDQAMNPVVVRTQI
>NZ_CP007152.1|WP_041335408.1|3752523_3753651_-|PilW-family-protein
MSKFRAPSAPDTRPGASQSGLSLVELLIATALGLILTLGVIQIYLSGNETYRQTQGLAHAQESTRFVSAVLTPDFRSAGSFGCLAEMGRPLDQVVDNRLNGGLVVPLDQALQGWEYTGTGPGDSVTLANAMATPGAGNWASGTAGANLPADLAGSVITNSDVIIVNALTSLGVPVNSANPQNGNSINLADNSGVEAESVVLATRGDCSEGEMFQKSNNANSSSVTMAGGNVNPGNNGNNFNLNYDPQTRVYQFTSMAYYIGQGTNGEPALFRRMMTPLQPPQELVSGVETLQILYGEDTGGTSAADDYVPADEVVDWNTIVSVRFSVMTRSQDEVLEEENNRNFDMLGSEVSQANNGDRRVRLISVSTTALRGRM
>NZ_CP007152.1|WP_041335419.1|3771445_3773011_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MQTELHTGIDLAVELLRQDNLPTLLKVASRQLENTFGLTRCWSLELDLSGRTLHCAALGEQGEFDCGDFSHPFAHLLQQGKPRELSRAASYHLDHPGFQALVDASNRPRSFWLEPIKGEDGRTLGILVLCNEEPEWDGITAQPLYRGLLTLLSHQWVSQLKTSDQVWQRRMLKRSLDHLHDAEAVRQRCEELATTLVGNSKAMTDLRAQIVRAAGSQLSVLVQGETGCGKDLVAQGIHRFSDRAEGPLVVVNCAAIPDSLLESELFGHTKGAFSGADRAKEGLLAQADGGTLFLDEIGDMPMALQSKLLRVLESRRFRPLGAQQEQHSDFRLVAATHQPLSDCIEEGRFRRDLFYRLSQFPLRVKPLRERPEDLEPLCRHFIREYTAREGAGPLGISSHALGMLAAYNFPGNARELRNIVEFACLQTPVGDDIQPEVLRLDDLFPSQETCVASDFQGTVVPGMPQADEVDDLRAAAQAFEAAIIRERLRQYGGNRAQAAESLGLPKRTLAHKCLKYQVTEA
>NZ_CP007152.1|WP_036211226.1|3773007_3773661_+|type-VI-secretion-system-associated-protein-TagO
MNPSIRSNSLLAIVLCALGTTMSLAANAQGNPQVAEAMACTEESQRLERLACFDEVFGTPFSVAVEDAIVGNQPERWRQAFAQEQRRRPGDGPLYRNTSELAGHLLTLSALGVKPPRPLLAVQCHNNITELTLMMPEAVKEERVTVDFGQGRQIWRVRDDGFVISGGRGLPAIRTVRNMAAASGVTVASSSGVVDGLMFDLTGFRETLEPLREACGW
>NZ_CP007152.1|WP_041335423.1|3780961_3781576_+|DUF4123-domain-containing-protein
MGAMETMNAGNLHFHEKHLQWYALLEGAHPTYNTLDLVYKNIAIPEWAAIYQFAPYEALAKVSPVLVKLDQPRKWLQQWQQSFPGLAGSMLGSDSGLETVVGHLRTLVSVRVEGGVDSLFRFHDSWIASALYPTLEDTERVRFHGPICQWLWPRGGEVYRAERPGEMPTEDRALSEGWLQLSTESQRAIHQGLMSKRNWKEGQQ
>NZ_CP007152.1|WP_041335425.1|3781572_3781953_+|hypothetical-protein
MTGPYISAGSPCKEPDKLYVEVAGTDVHPGHELVLEKNGEPVSTLSMEQRQWHQRYECDYTAGAAERFDHTLTLTVEKEQGGNLRLPLLDEPHPTRLSAYTQPNLLFPIYPLAEMPRVEAKPGMPC
>NZ_CP007152.1|WP_041335428.1|3782024_3782351_+|hypothetical-protein
MRDIDLPHYRELVKSESPIAAGEREPAGVVLNTLWVPARFQTVGAAQWTIGDVELAWSEQQWSWEYIESLESGQEIIHLPASYRELTGIPPTARAERSTSMPVAGPDA
>NZ_CP007152.1|WP_144402220.1|3782428_3784174_+|hypothetical-protein
MSDAAPCRRRSPDREKDAANPALVAQALDGSGLDDENSPLGKIRYELERMEGFTCKAAETVDFASGLTRWVDELIGEDWRAQFGGGEATPGAAEATDKSEAARKELLDEVRRRLRAGDSDEDQLSSLRERHVPAVPIPDLLFELEWLTNQTGLHLTHLSTVAESAQEHPHFKSAMLVHSAIFDHKGYERGPFDDYRYSVDTEKLDTALRKADREACRATCYELIERRIRLLENQAVPVFNDLFALNGLSHPISLQTLNPLLAHLETSVFHFDPLVSKVAREREAYRDEAGAEFIKKLARGQTGLSDFLAADADIEQDQVSEPEPNDGSGKPRPGLLKWIQAQRPAAGDLPEALRDQYELSKHEREKVYENIRNMADPELLQWATASYTTMGQLMADLSSEFYLITQRALLRNIGNGPIYQVTDTLEIPTRYMKLGNPFFGGLVLGHANPAMLNPNPEMVPLGMRFGSQAAGIGTFSNEAIDHALQRSNGSQIVRPRGGVVNRVGPGMSGNYAVIRNGNGKLLANATSVAGLQGSTPTASAQVEMFSAHKDSVAARMSKGFTSRAGSVLMRWLRRGCWGCLG
>NZ_CP007152.1|WP_144402221.1|3784230_3784671_+|hypothetical-protein
MISVTYGATNFLYWLGHIVEAENLARETRLSWLTRTRVEVDRIANPLLRSVAGRLFADRALSIAKYAGVFGAALEVVLSLWEGVQRLQANDMDAAAGYFTAAAGFGVFMFSHLAGTGLVPILGVSFAAALAAVALIVALAAWHGLS
>NZ_CP007152.1|WP_041335437.1|3784652_3785252_+|hypothetical-protein
MAWAILNTDDALEIWLKHGPFGKEDPANQFQHLHSEPEDAFQFLMGGLFPLIGKSGNLAEFNDRGLLSDTEKDWLLDNDRSEGHVITVRSAAFALVDRPEEQFQAHFWMTWRHGGKATALTPEYVYYDAERQMLRFHLPKPQWRGMGRFRSMEQLRAKVQIALGNGGLLPVSDMEQPLVPAVDEPEHTGKNSRWLTITS
>NZ_CP007152.1|WP_052479562.1|3785258_3786257_+|hypothetical-protein
MTDEYQDTAYRSDAIPVLPPGGHPDMDKAFQRLPWGHYQNPVMPNTMETQLAYARLFEDESDAEDGHPWGESIFSVSKGFLSGLQGFLYILYMCAALAFFISFLPLAAHTLGVMTRGGSVDEFATVFYSYLYIYLVIGICYFGGKYGRLLLAHLTNKRQRANPTGLYRREGVVRIKEGKEVFEAPFIEFDAYLVHTPSGRGGRYFNLVLQHRYSKHQLWMKGLLTDAMDQKEVYAYWDMLQQYMDVTRPLPDVPLFEPFRSRDPVTAKWDERTGRDPFKWRKMSPESWRKNHEQTYRDRLRSTNFHHPCILDAHIQGRGLALPEEPRGAMLA
>NZ_CP007152.1|WP_041335440.1|3786428_3786632_+|hypothetical-protein
MAETAYYSSTAWNPGRDEKPRRRGQLDARSKRFRVLREKEDEMHRRVKRIDTERRPNLMAEKLKYAS

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Crispr_ID: NZ_CP007152_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007152_3

4422917-4422996

Orphan

Consensus_repeat	Method
CCCCACTGAATTTCGTCCTACAGTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007152_3

>merge|NZ_CP007152|3|4422917-4422996|CRISPRCasFinder
CCCCACTGAATTTCGTCCTACAGTAGTAAGAGTTCATTCCGAGACGTCCTGCTGCCCCACTGAATTTCATCCTACAGTAG

>NZ_CP007152|3|3|4422917-4422996|CRISPRCasFinder
CCCCACTGAATTTCGTCCTACAGTAG	TAAGAGTTCATTCCGAGACGTCCTGCTG
CCCCACTGAATTTCATCCTACAGTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007152.1\|WP_011784144.1\|4437332_4438277_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP007152.1\|WP_041336175.1\|4423026_4423317_+\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_082040619.1\|4412605_4413235_-\|transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP007152.1\|WP_052479617.1\|4441206_4442181_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_041336173.1\|4421683_4422685_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_041336170.1\|4416205_4416403_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_041336182.1\|4440189_4441020_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_007154021.1\|4408191_4408566_+\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP007152.1\|WP_158498382.1\|4441006_4441228_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007152.1\|WP_031209879.1\|4432424_4433492_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP007152.1\|WP_041336167.1\|4403808_4408023_+\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NZ_CP007152.1\|WP_011784143.1\|4435444_4436695_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP007152.1\|WP_011784135.1\|4428561_4429614_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP007152.1\|WP_158498381.1\|4415657_4416014_-\|transposase	unknown	unknown	unknown
NZ_CP007152.1\|WP_036203340.1\|4408679_4409150_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP007152.1\|WP_016915087.1\|4423313_4423658_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP007152.1\|WP_036203343.1\|4409168_4411274_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP007152.1\|WP_041336171.1\|4420870_4421584_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213191
NZ_CP007152.1\|WP_031209878.1\|4433624_4433945_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|178203
NZ_CP007152.1\|WP_036205627.1\|4399654_4403731_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749

Protein	Function_ID	Function_description	E-value
NZ_CP007152.1\|WP_036203343.1\|4409168_4411274_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP007152.1\|WP_011784144.1\|4437332_4438277_+\|IS5-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	3.01669e-32
NZ_CP007152.1\|WP_036203340.1\|4408679_4409150_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	1.16015e-104
NZ_CP007152.1\|WP_082040619.1\|4412605_4413235_-\|transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.95317e-07
NZ_CP007152.1\|WP_007154021.1\|4408191_4408566_+\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	2.34524e-89
NZ_CP007152.1\|WP_031209879.1\|4432424_4433492_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	7.36713e-26
NZ_CP007152.1\|WP_041336167.1\|4403808_4408023_+\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NZ_CP007152.1\|WP_011784143.1\|4435444_4436695_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	1.82423e-79
NZ_CP007152.1\|WP_011784135.1\|4428561_4429614_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.31968e-49
NZ_CP007152.1\|WP_016915087.1\|4423313_4423658_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.39668e-44
NZ_CP007152.1\|WP_041336171.1\|4420870_4421584_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	7.0239e-108
NZ_CP007152.1\|WP_031209878.1\|4433624_4433945_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|178203	PLN02593, PLN02593, adrenodoxin-like ferredoxin protein.	6.06772e-25
NZ_CP007152.1\|WP_036205627.1\|4399654_4403731_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0

>NZ_CP007152.1|WP_041336173.1|4421683_4422685_+|hypothetical-protein
MNYRNSLLTFVFASSLGAAPATHAVDLGTYNDTSFSVGGFLKAEGIFEDPENGDSRIFGRANQSRFNLKTVTQKQGHTVVGFIEGDFYGGVYPGENNDWRLRHAFIKIDNATVGQTWTGQFWAVAFTDYLDFLGGPRGTLAGLNFRTALASYQFQDLRVTAQDPVYADADIPDLAINYNLNLDGGHKIILTASGREVDNGDFVAGGAVGTKIMLGRHSLNLNAHYGEGLGAFTGVGVNGSLSGDVENGEAVSQGGLNAGFRYVFNNHWRANVSYTKVEVDDQAETDYEGHRLNVIHNIIPELEVGVEWRKYNLAFGPLAPEGQQVEVMAKYAF
>NZ_CP007152.1|WP_041336171.1|4420870_4421584_+|ABC-transporter-ATP-binding-protein
MSEALLEIKNINTLYGHSHILHDLSFRLDKGQSMSLMGRNGMGKTTTLKSILGIVPPRSGHVYFDGEDVGRLPTWKRMRRDIAYVPEGRGIFHNLTVKEHLQMAARPGSDGRGSWDYDRVLETFPRLQERLSNLGTELSGGEQQMLAIGRALVTNPRLMILDEATEGLAPLIRQDIWSVIAAIRESGISTLVVDKNIKALKKLCDRHVVLIKGKVHFDGSSEELDLNLENVERALSL
>NZ_CP007152.1|WP_041336170.1|4416205_4416403_-|hypothetical-protein
MLPAILTQHDHALAVDLGDDPQHDAFPALEGYFQAHPQLTQRLEIFLIPQFVDAPSVSLVVQLAI
>NZ_CP007152.1|WP_158498381.1|4415657_4416014_-|transposase
MPGNRNTGEDWSPEAKLAVVVETASMSEAELSAYCREKGLYPEQVQRWKEACLQGAGMQEDRDKAAQKQKRESRKTLKKLKAEVRRKDKALAETTSLLVLSKKLEALYGEDPDSSEDD
>NZ_CP007152.1|WP_082040619.1|4412605_4413235_-|transposase
MKRNPVIWPEGCWLNPPFLHSDNGAPMTSYTLKARLADLSMLMSHSSPRVSNDNPYSESLFRTVKYCPAWPSKGFASLAAVCNWMLAFEEAYNEQHLHSGIQFVTPADRHRGIDHERLAHRKMVYEKAKRLNPRRWSGPTRNWEVTGPVSLNPGKLQELERNKLAGSHVFNEHEHPPAVCSVGKDDVERSMNVMNSRRTGFSRDETSGR
>NZ_CP007152.1|WP_036203343.1|4409168_4411274_+|elongation-factor-G
MARKTPIKRYRNIGICAHVDAGKTTTTERVLFYTGISHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWQGMDKQYPEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEPQSETVWRQANKYEVPRMVFVNKMDRAGANFLRVVNQIKNRLGATAVPIQLPIGAEDEFAGLVDLIRNKAIYWNEDDAGATYDQRDVPAEMADEVAKYREEMMEAAAEANEELMERYLEEGELSIEDIKKGLRIRTLANEIVVATCGSAFKNKGVQAVLDSVIEFLPAPDEVKAIRGEVDEDGTEETRQADDDAPFSALAFKIATDPFVGTLTFFRVYSGKLESGNAVYNSVKSKKERVGRMVQMHSKERQEIKEVLAGDIAAAIGLKSVTTGDTLCDENHKIILERMEFPEPVISVAVEPKSKADQEKMGVALGKLAQEDPSFQVRTDEESGQTIISGMGELHLDIIVDRMRREFKVEANIGKPQVAYRECIRKNVDVEGKFVRQSGGRGQYGHVKLKLEPLPLDEEDGENFIFVNEIVGGVVPKEYIPAVQQGIEEQMKNGCLAGYPLLRIKATLYDGSYHDVDSNEMAFKVAGSMAMKKGALEASPALLEPLMKVECVTPEEYMGDVVGDLNRRRGLVQGMEDGPSGKTIRAEVPLSEMFGYATDLRSATQGRASYAMEFSRYMEAPSNIAEAIIKKG
>NZ_CP007152.1|WP_036203340.1|4408679_4409150_+|30S-ribosomal-protein-S7
MPRRRVAAKREIIPDPKFGSARLAKFINHVMESGKKAVAERIVYGALDIVADKSKEEPIDMFEKALENIQPMVEVKSRRVGGATYQVPVEVRPSRQNALAMRWLVEFSRKRGEKSMAQRLAGEILDAADSKGSAVKKREDVHRMAEANKAFSHFRF
>NZ_CP007152.1|WP_007154021.1|4408191_4408566_+|30S-ribosomal-protein-S12
MATINQLVRKPRKRKAAKSDVPALQACPQRRGVCTRVYTTTPKKPNSALRKVCRVRLTNGYEVSSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGTLDTQGVQNRKQGRSKYGAKRPKS
>NZ_CP007152.1|WP_041336167.1|4403808_4408023_+|DNA-directed-RNA-polymerase-subunit-beta'
MKDLLNLLKNQNQKQEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALASVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLYFESFIVIEPGMTTLERGQLLNDEQYYEALEEFGDEFDARMGAEAVQELLEGIDLQAEVEALREEIPQTNSETKIKKFSKRLKILEAFLYSGNKPGDMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVEREEGVVWDILDEVIREHPIMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERKSAVGEGMVFADVKEAHRAYGAGKVDLQAIVKVRVKEVTIQEDGERTEEYKIVDTTVGRALLFDIVPDGLSYELVNKPMVKKSISNLINTCYRDAGLKDTVIFADQLMYMGYHYATVSGISIGFNDFEIPPEKYELVDAASEEVKDIETQYASGLLTQGEKYNKVIDIWSRANDKVSKAMMDRLSKEQVIGPDGKPVKGENGEDLMQESFNSVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVSQDLVVTETDCGTEEGLLMTPHIEGGDVVVPLGDRVLGRVTARAAFTPTDKDNAVVEAGVLLDEKAVESLERAGVDEVWVRSAITCETRHGICSKCYGRDLARGHEVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDNIQVKHGGTVRLHNLKSIEKSDGSLVVVSRSSALAIADEQGREREWYKLPYGAVLSVKHGDAVEAGVAVAKWDPHTHPIIAEAEGTAKFVNMDQGITVRTQTDELTGLSTMEVIDPKERPAAGKDIRPAIQLIDDKGNDVELPGGGTAIFFLPANALVTMANGAKIELGDVVARIPQESSKTRDITGGLPRVADLFEARRPKESSILAEVSGVVSFGKETKGKKRLVITPKDADPYEVLIPKHRQMNVFEGETVEKGEVISDGPSNPHDILRLLGVVALAKYITNEIQDVYRLQGVVINDKHIEVIVRQMLRKVEITDAGDTSLLAGDQVEITQFMEENEKAEAADKETARCERLLLGITKASLATESFISAASFQETTRVLTEGAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHAERRRKRDLEEQGVTAADVEEALSAELNRES
>NZ_CP007152.1|WP_036205627.1|4399654_4403731_+|DNA-directed-RNA-polymerase-subunit-beta
MTYSYTEKKRIRKDFSKLPSVMDVPYLLSIQLDSFRDFLQSEAAPENRRETGLHAAFKSVFPIVSYSGNAALEYVSYRIGEPVFDVKECQLRGVTYAAPLRVKVRLIIYDKESSNKAIKDIKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARVIPYRGSWLDFEFDAKDSVFVRIDRRRKLPASILLRALGYNSEQMLEMFFDTSKFSIGPEVCKLELVPSRLRGDIATFDIKDKKGSVIVEEGRRITARHIKQLEKAGLTELEVPTEYLYGRVLSKDMVDTKSGEVLVECNTELTEEVVTKILDAGVTEIETLYTNDLDCGPFMSDTLRIDPTRTPLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSSVGRMKLNRRLRREESTGEGTLTHDDIIDVLKTLIDIRNGQGNVDDIDNLGNRRVRCVGEMAENQFRVGLVRVERAVRERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARSNSYGFLESPYRKVVDGEVTDEVVYLSAIEESNYIIAQASAAMDENKRLSDELVTVRHQNEFTVTPPENVNFMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSQVPLVGTGVERTVAQDSGVCVTARRGGVIESVDAARIVVRVNDDETEAGDAGVDIYNLTKYTRSNQNTCINQRSIVNQGDEIARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISEKVVQEDRLTTIHIQELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVGPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSSRVPTGTRGTVIDVQVFTRDGIEKDTRAQSIEKEQLDEYRKDLKDEYRIVEGATFERLTNALKGQEVISGPGLKKGAKLDESYLAELPRDDWFKLRMKDEALNELLEKSEQGLEDRKKEHEARFDDKKGKLQQGDDLAPGVLKIVKVYLAIKRRIQPGDKMAGRHGNKGVISSVMPIEDMPYDEHGNTVDVVLNPLGVPSRMNVGQVLETHLGAAAKGLGERISQMLDEQRKIAELRNLLDEIYNHSDEVTKVDLDSLSDKEILALANNLRAGVPMATPVFDGAKEAEVKRMLELAGLSTTGQTVLYDGRTGDEFDRPVTVGYMYILKLNHLIDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESD
>NZ_CP007152.1|WP_041336175.1|4423026_4423317_+|IS66-family-insertion-sequence-hypothetical-protein
MRKHRTIEQWQVLVDQQIGSSLSAMQFCKQEHIGYASFCNWRKRLSDPSTDDSTGSGEPGFLDLSSLMGTSQSSGPGWNIVLSLGNGVELRLSQNG
>NZ_CP007152.1|WP_016915087.1|4423313_4423658_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIGLDSQARIWLCTEPTDMRKSFRGLSALVRNQLKHDPLSGQYFVFVNRRKTQMKMLYFTATGYCLWAKRLEQGQFRVPLSASGQRALTLTDLQLLIDGIEVQKYRQFKRFRGV
>NZ_CP007152.1|WP_011784135.1|4428561_4429614_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MRFLLTLFISLLILSGCQQSAETPPEARPPVPWVKTVELKEAGPTSQRFSGTLRGRHEVPQAFQIAGRIQQRFIDPGQRVEKGDLLFKLDSRDLIATAEGAAADLRRAEAALAIATNELQRQQELVGRQFVSEQTLQRLELAEREARSQVETASARNQQAQNALGYAELKAANAGVITEVIVEPGQVVGVGQTLAVLAEDQSLEVEVFLPQGSNPPRQGYVPLPNGEQLAVNLREIAGAADARSRSWRARYSLEGPYPSSLTLGSVVSVRLMQKQTTASHRVPLGALDERGETPQVWLVSDGMVTPLAVEVIDLGEEYAQIRANINATTPIVALGTHLLTPGMAVRELAQ
>NZ_CP007152.1|WP_031209879.1|4432424_4433492_-|AraC-family-transcriptional-regulator
MAARKKMEELQSPGPDIPSNYSRLVARELNLTARQLPRLLRGTGLGVTQFLSEDGLLTVAQQIQILRNAMDLSGQPEFGLRLGKRMTPATHGAMGFVAYSSPDLLTALHAIRTFLPTRASFIQLHLQQVGERLECILQYLGPLDDDIQRCLSDAMVKALFEFGEFMVGRPLREAEVCFAHPKPEYHATYSDFLSGQIHFDCSQLKLSLPMALCREPNASANHENYHLAMRQCEAMLAQLQSDKPSYQTRLKKMMLSRPPGTLSEEEAAASLFISKRTLARKLNHEGSSFRKIRDEILSQQAALYLRDSELSIEAIAALMNYHDSANFRRAFKRWFGQPPEQFRLNVRSHTIYTRD
>NZ_CP007152.1|WP_031209878.1|4433624_4433945_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MGKVTFIEHDQTEHVAEFKAGSSVMQIAVDSAIPGIDGDCGGECACGTCHVIVTNEWFSKTGTPGNEEEQMLSMTPERASTSRLGCQVVLTDEMDGMTVHLPEFQM
>NZ_CP007152.1|WP_011784143.1|4435444_4436695_+|FAD-dependent-oxidoreductase
MVSKRKERTVIVGGGHAAGALLTALLQKKYQHEVVLVGNEPHPPYHRPPLSKNYLTGDVDQESLYLKPRSVYENAGHQLRLGVRVEQIDRDSSTISLSDQSRLQYDRLVLATGSHLRHLNAPGADLNGIHYLHDIADSEVLREQLVAGKRLVVVGGGYIGLEVAASANKKGVNVTVLEAAERLMQRVTGPEISAFLYDKHRGAGVDVRLNTAVTGFEAGDQGHVAGVTLADGSTVPADIVLVSIGIIPETALAKDAGLPCDNGIIVDEFTRTEDPAILAIGDCTRHRNLFFEKMQRLESVANAVDQARTAAATLMGEEKPYDSVPWFWSNQYDVRLQMVGLSQNHDQRVVRGTPEDKGFAVFYLREGCVIAVDAVNLPLAFLVGKTLVQQRRTINPELIEDPDTELKSLVNGRLQS
>NZ_CP007152.1|WP_011784144.1|4437332_4438277_+|IS5-family-transposase
MDQITFSEAEYQTKKRKTRREIFLERMDKLIPWKQLEKKVARYYPKGQNGRPPYPLSAMLRVHCMQLFYNLSDPAMEDALYEIESMRQFAGLKLDRLPDETTILKFRHFLEQHGLGKVLFKEVNKHLEKNGLMLREGSIVDATIISASSSTKNSSGKRDPEMHQTRKGNEWQFGMKMHIGVDDTLGLIHSIDTTAANVHDIVPSGKLLHGEERRVFGDAGYLGIQKRGEHKHRKNVSWFIAKRPGSRKALNADKLKAEKIKASIPSKVEHPFRYIKQVFGYNKVRYRGLSKNTNRLHLLAAFSNLLIGEKYLLA
>NZ_CP007152.1|WP_041336182.1|4440189_4441020_+|hypothetical-protein
MSYQLYVTGGYGFTEAILPTLLHPSNAVDIARDYFTRGYQGQHIDLPPDADVSHTGNLTDTQKQTLLEDLQEGRLVLSSRYEPGFDLFTETQANPDTLRSDLPPTLRQRLQQHWPGRSRGGATAARSDSLAPANESSAPSPEPPAPAAPVPGAGPYRVTLAYRWLDGTGVAGLPFTLATDDEEITGTLDPNGEAHIEGLNGRFAFVRLSSDASDDEVGQQRRAIQHALTEVLKHEQREADAGAGIPTDALASAYGRQHRCCLPGGCGRRYWALAVR
>NZ_CP007152.1|WP_158498382.1|4441006_4441228_+|hypothetical-protein
MQFVDSMADLASPSQSLMDGLKAAWIASENSSDASWYESYRANYNETRHKRWSRPWASIPRTSPVRTWPKRMS
>NZ_CP007152.1|WP_052479617.1|4441206_4442181_+|hypothetical-protein
MAEAYELTNLVMADPILRESLNDFVAEYASIQHHTEVTYLTGAVAFDLILMAVLAVATGGAAAVGAAAGRIRHAGLLASLGKTVKAYCAAVRRQRLRYLWRSTDLKKKNHLEARASKRVEGQELKPAKNVPNKFGEVYAKAPAAKLEIDTIADEIAEMFGGQVAKAPIKSQDRATQKIMNDYDGDATKIKDLARNTIIVSPEKMDAVAAELAKRGANVKVINGTTDPLGYSGVNSTIKTQAGIFGEVQVNTPAMIYAKESESVARVLLGDDLYTSIASKSGIPGGQGHKFYEEWRVLSPSSTQAQSVSEQSQEYYEAIRKANGY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007152_3	3.1\|4422943\|28\|NZ_CP007152\|CRISPRCasFinder	4422943-4422970	28	NZ_CP021334	Marinobacter salarius strain HL2708#2 plasmid pHL2708Z5, complete sequence	138923-138950	0	1.0

1. spacer 3.1|4422943|28|NZ_CP007152|CRISPRCasFinder matches to NZ_CP021334 (Marinobacter salarius strain HL2708#2 plasmid pHL2708Z5, complete sequence) position: , mismatch: 0, identity: 1.0

taagagttcattccgagacgtcctgctg	CRISPR spacer
taagagttcattccgagacgtcctgctg	Protospacer
****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4492253 : 4605501

Enterobacteria_phage(33.33%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007154039.1\|4492253_4493537_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	9.3e-126	54.8
WP_027832426.1\|4496351_4496624_+	HU family DNA-binding protein	A4JWM7	Burkholderia_virus	1.6e-22	65.6
WP_041336244.1\|4499064_4500264_+	hypothetical protein	NA	NA	NA	NA
WP_007154034.1\|4501350_4501899_+	hypothetical protein	NA	NA	NA	NA
WP_041336245.1\|4501908_4504308_+	hypothetical protein	NA	NA	NA	NA
WP_041336247.1\|4505380_4506115_+	type III pantothenate kinase	NA	NA	NA	NA
WP_041336249.1\|4511589_4512081_-	PaaI family thioesterase	NA	NA	NA	NA
WP_041336251.1\|4512820_4513435_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_041336253.1\|4513486_4514158_-	OmpW family protein	NA	NA	NA	NA
WP_144402240.1\|4514243_4515107_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	7.9e-20	30.4
WP_041336255.1\|4515096_4515378_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_158498387.1\|4515426_4515798_+	diguanylate cyclase	NA	NA	NA	NA
WP_158498388.1\|4515837_4516008_+	hypothetical protein	NA	NA	NA	NA
WP_041336258.1\|4516113_4516611_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_041336260.1\|4516694_4517834_-	cyclohexanecarboxyl-CoA dehydrogenase	NA	NA	NA	NA
WP_041336261.1\|4517888_4518674_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_041336262.1\|4519508_4521173_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	2.7e-32	29.1
WP_041336264.1\|4521383_4522148_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_041336267.1\|4525231_4525732_+	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	NA	NA	NA	NA
WP_041336269.1\|4525728_4526073_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_052479624.1\|4526107_4527460_+	guanine deaminase	NA	NA	NA	NA
WP_041336271.1\|4528752_4529397_-	hypothetical protein	NA	NA	NA	NA
WP_041336276.1\|4535857_4537018_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_041336282.1\|4544592_4545387_+	2-oxo-3-hexenedioate decarboxylase	NA	NA	NA	NA
WP_082040628.1\|4545383_4545596_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_041336285.1\|4545600_4545831_+	hypothetical protein	NA	NA	NA	NA
WP_041336287.1\|4546237_4547593_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_041336289.1\|4547612_4548107_+	benzene 1,2-dioxygenase	NA	NA	NA	NA
WP_041336290.1\|4548320_4549334_+	ring-hydroxylating dioxygenase ferredoxin reductase family protein	NA	NA	NA	NA
WP_041336292.1\|4550312_4550636_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_052479626.1\|4550717_4551413_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_041336293.1\|4551433_4552531_-	hypothetical protein	NA	NA	NA	NA
WP_041336294.1\|4552530_4554891_-	hypothetical protein	NA	NA	NA	NA
WP_139043652.1\|4554953_4555259_-	hypothetical protein	NA	NA	NA	NA
WP_041336295.1\|4556083_4556650_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011784148.1\|4561134_4562589_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_081467554.1\|4562640_4562787_-	rubredoxin	NA	NA	NA	NA
WP_167604019.1\|4566412_4566559_-	rubredoxin	NA	NA	NA	NA
WP_041336937.1\|4566880_4567249_+	DUF3703 domain-containing protein	NA	NA	NA	NA
WP_041336298.1\|4567327_4567699_+	hypothetical protein	NA	NA	NA	NA
WP_041336299.1\|4567775_4568183_+	hypothetical protein	NA	NA	NA	NA
WP_041336300.1\|4568551_4569031_+	hypothetical protein	NA	NA	NA	NA
WP_041336301.1\|4569138_4569435_+	hypothetical protein	NA	NA	NA	NA
WP_091644673.1\|4569548_4569935_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_143071190.1\|4570557_4571490_-	hypothetical protein	NA	NA	NA	NA
WP_041336304.1\|4571609_4571987_-	hypothetical protein	NA	NA	NA	NA
WP_041336306.1\|4572033_4572414_-	hypothetical protein	NA	NA	NA	NA
WP_041336308.1\|4572517_4572994_-	hypothetical protein	NA	NA	NA	NA
WP_041336310.1\|4577263_4577725_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_052479689.1\|4582361_4583336_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_041336312.1\|4584945_4585686_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	9.7e-43	40.7
WP_041336314.1\|4585851_4587036_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.7e-140	61.1
WP_052479629.1\|4587032_4587836_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.2e-107	76.5
WP_052479630.1\|4588043_4588847_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.2e-108	75.6
WP_144402242.1\|4590613_4591432_+	hypothetical protein	NA	NA	NA	NA
WP_041336316.1\|4594888_4596190_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_052479633.1\|4599942_4600560_-	LemA family protein	A0A0C5K8T5	Enterococcus_phage	1.2e-09	27.3
WP_091644701.1\|4601968_4603121_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	9.5e-53	46.6
WP_126813345.1\|4603216_4604331_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	5.4e-21	30.2
WP_144402243.1\|4604544_4605501_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	6.9e-25	31.8

Anti-CRISPR protein detection

Acr_ID: NZ_CP007152.1|WP_052479578.1|4058716_4059034_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP007152.1|WP_052479578.1|4058716_4059034_-|hypothetical-protein

4058716_4059034_-

105 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|93	0.44761904761904764	1	0.7222222222222222

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007152

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information