CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010359	Pseudomonas plecoglossicida strain NyZ12, complete genome	2 crisprs	DEDDh,cas3,DinG,WYL,RT,csa3,PD-DExK	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010359_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010359_1

1851616-1851737

Orphan

Consensus_repeat	Method
ACCTGTGGGAGCGGGTTTACCCGCGAAGAGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010359_1

>merge|NZ_CP010359|1|1851616-1851737|CRISPRCasFinder
ACCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGTGCAGGCAGTAGATGCTCCCCACAGGTCTCCAACGCCCTTGAGGACTGTACAGTACCTGTGGGAGCGGGTTTACCCGCGAAGAGGCC

>NZ_CP010359|1|1|1851616-1851737|CRISPRCasFinder
ACCTGTGGGAGCGGGTTTACCCGCGAAGAGGCC	AGTGCAGGCAGTAGATGCTCCCCACAGGTCTCCAACGCCCTTGAGGACTGTACAGT
ACCTGTGGGAGCGGGTTTACCCGCGAAGAGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010359.1\|WP_038409713.1\|1864176_1866351_-\|phage-adsorption-protein-NrfB	unknown	unknown	gnl\|CDD\|236884
NZ_CP010359.1\|WP_023661513.1\|1859104_1860196_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP010359.1\|WP_013972847.1\|1843250_1844744_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143410
NZ_CP010359.1\|WP_003259958.1\|1856981_1857683_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP010359.1\|WP_015270567.1\|1848605_1849727_+\|quinohemoprotein-amine-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|211887
NZ_CP010359.1\|WP_024087217.1\|1840353_1841646_+\|phenylethylamine-degradation-protein-PeaF	unknown	unknown	gnl\|CDD\|223717
NZ_CP010359.1\|WP_013972844.1\|1846817_1848248_+\|quinohemoprotein-amine-dehydrogenase-maturation-protein	unknown	unknown	gnl\|CDD\|274848
NZ_CP010359.1\|WP_023661325.1\|1851757_1852333_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP010359.1\|WP_013972839.1\|1857689_1858988_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236724
NZ_CP010359.1\|WP_041505906.1\|1849865_1851539_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|237145
NZ_CP010359.1\|WP_041505908.1\|1861174_1864180_-\|phage-receptor	unknown	unknown	gnl\|CDD\|236624
NZ_CP010359.1\|WP_041505907.1\|1860335_1861175_-\|DUF4434-family-protein	unknown	unknown	gnl\|CDD\|182155
NZ_CP010359.1\|WP_041505905.1\|1837960_1839694_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP010359.1\|WP_003259966.1\|1866544_1866976_+\|PACE-efflux-transporter	unknown	unknown	gnl\|CDD\|226610
NZ_CP010359.1\|WP_004375838.1\|1848249_1848573_+\|quinohemoprotein-amine-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|312520
NZ_CP010359.1\|WP_031325501.1\|1845202_1846768_+\|quinohemoprotein-amine-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|274849
NZ_CP010359.1\|WP_038409715.1\|1855534_1856710_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|169982
NZ_CP010359.1\|WP_024087218.1\|1839683_1840361_+\|peptidase-S8	unknown	unknown	gnl\|CDD\|173817
NZ_CP010359.1\|WP_024087216.1\|1841784_1843098_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372583
NZ_CP010359.1\|WP_023661326.1\|1852394_1855523_-\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335

Protein	Function_ID	Function_description	E-value
NZ_CP010359.1\|WP_038409713.1\|1864176_1866351_-\|phage-adsorption-protein-NrfB	gnl\|CDD\|236884	PRK11234, nfrB, phage adsorption protein NrfB.	0
NZ_CP010359.1\|WP_023661513.1\|1859104_1860196_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.69112e-51
NZ_CP010359.1\|WP_013972847.1\|1843250_1844744_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143410	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences.	0
NZ_CP010359.1\|WP_003259958.1\|1856981_1857683_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.01275e-81
NZ_CP010359.1\|WP_015270567.1\|1848605_1849727_+\|quinohemoprotein-amine-dehydrogenase-subunit-beta	gnl\|CDD\|211887	TIGR03907, QH_beta, quinohemoprotein amine dehydrogenase, beta subunit. Quinohemoprotein amine dehydrogenase is a three subunit enzyme with both a heme group and a cysteine tryptophylquinone group derived by post-translational modification of the gamma subunit. This model describes the beta subunit. This enzyme catalyzes oxidative deamination of primary aliphatic and aromatic amines (). [Energy metabolism, Amino acids and amines].	0
NZ_CP010359.1\|WP_024087217.1\|1840353_1841646_+\|phenylethylamine-degradation-protein-PeaF	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	6.26919e-16
NZ_CP010359.1\|WP_013972844.1\|1846817_1848248_+\|quinohemoprotein-amine-dehydrogenase-maturation-protein	gnl\|CDD\|274848	TIGR03906, quino_hemo_SAM, quinohemoprotein amine dehydrogenase maturation protein. Members of this protein family are radical SAM enzymes responsible for post-translational modifications to the gamma subunit of quinohemoprotein amine dehydrogenases. Ono, et al. () suggest that this protein is responsible for intrapeptidyl thioether cross-linking rather than cysteine tryptophylquinone biogenesis in the gamma subunit. [Protein fate, Protein modification and repair].	0
NZ_CP010359.1\|WP_023661325.1\|1851757_1852333_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	6.98344e-80
NZ_CP010359.1\|WP_013972839.1\|1857689_1858988_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	3.34747e-72
NZ_CP010359.1\|WP_041505906.1\|1849865_1851539_+\|AMP-binding-protein	gnl\|CDD\|237145	PRK12583, PRK12583, acyl-CoA synthetase; Provisional.	0
NZ_CP010359.1\|WP_041505908.1\|1861174_1864180_-\|phage-receptor	gnl\|CDD\|236624	PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane subunit; Provisional.	0
NZ_CP010359.1\|WP_041505907.1\|1860335_1861175_-\|DUF4434-family-protein	gnl\|CDD\|182155	PRK09936, PRK09936, DUF4434 family protein.	5.80874e-149
NZ_CP010359.1\|WP_041505905.1\|1837960_1839694_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.3426e-137
NZ_CP010359.1\|WP_003259966.1\|1866544_1866976_+\|PACE-efflux-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	2.62035e-41
NZ_CP010359.1\|WP_004375838.1\|1848249_1848573_+\|quinohemoprotein-amine-dehydrogenase-subunit-gamma	gnl\|CDD\|312520	pfam08992, QH-AmDH_gamma, Quinohemoprotein amine dehydrogenase, gamma subunit. Members of this family contain a cross-linked, proteinous quinone cofactor, cysteine tryptophylquinone, which is required for catalysis of the oxidative deamination of a wide range of aliphatic and aromatic amines. The domain assumes a globular secondary structure, with two short alpha-helices having many turns and bends.	1.05144e-47
NZ_CP010359.1\|WP_031325501.1\|1845202_1846768_+\|quinohemoprotein-amine-dehydrogenase-subunit-alpha	gnl\|CDD\|274849	TIGR03908, QH_alpha, quinohemoprotein amine dehydrogenase, alpha subunit. Quinohemoprotein amine dehydrogenase is a three subunit enzyme with both a heme group and a cysteine tryptophylquinone group derived by post-translational modification of the gamma subunit. This model describes the beta subunit. This enzyme catalyzes oxidative deamination of primary aliphatic and aromatic amines (). [Energy metabolism, Amino acids and amines].	0
NZ_CP010359.1\|WP_038409715.1\|1855534_1856710_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|169982	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit.	8.97637e-118
NZ_CP010359.1\|WP_024087218.1\|1839683_1840361_+\|peptidase-S8	gnl\|CDD\|173817	cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.54752e-17
NZ_CP010359.1\|WP_024087216.1\|1841784_1843098_-\|hypothetical-protein	gnl\|CDD\|372583	pfam13372, Alginate_exp, Alginate export. This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.	0.000837979
NZ_CP010359.1\|WP_023661326.1\|1852394_1855523_-\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0

>NZ_CP010359.1|WP_041505906.1|1849865_1851539_+|AMP-binding-protein
MPQPSYSQGNQDKPLLTQCIGDAFDTTVARFPDRDALVVRHQALRYTWQQLAEAVDQHARALMALGVQPGDRLGIWAPNCAEWCITQFASAKVGAILVNINPAYRSSELDYALGQSGCRWVICADAFKTSDYHAMLLGLVPGLAGGQPGALICERFPELRGVVSLAVAPPAGFLAWHDLQARAAAVSREALAERQAQLRCDDPINIQYTSGTTGFPKGATLSHSNILNNGYMVGESLGLTEHDRLVVPVPLYHCFGMVMANLGCMTHGSTLIYPNDAFDPLATLRAVAEEKATALYGVPTMFIAELDHPQRGEFDLSSLRTGIMAGATCPIEVMRRVIGEMHMAEVQIAYGMTETSPVSLQTGASDDLERRVTSVGRTQPRLENKVIDADGNTLARGEIGELCTRGYSVMLGYWNNPKATAESIDEEGWMHTGDLAVMDEQGYVRIVGRSKDMIIRGGENIYPRELEEFFFTHPAVADVQVIGVPCSKYGEEIVAWVRLHPGHTASAEELRDWAKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISVEELSAR
>NZ_CP010359.1|WP_015270567.1|1848605_1849727_+|quinohemoprotein-amine-dehydrogenase-subunit-beta
MKAGRCASLALTIAATACAGLVQAADTGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR
>NZ_CP010359.1|WP_004375838.1|1848249_1848573_+|quinohemoprotein-amine-dehydrogenase-subunit-gamma
MKHLKPLNNKARILEQAAAEDRVEEVMAMSAVAGCTATTDPGWEVDAFGGVSSLCQPMEADLYGCSDPCWWPAQVPDMMSTYQDWNAQASNSAEDWRNLGTVFPKDK
>NZ_CP010359.1|WP_013972844.1|1846817_1848248_+|quinohemoprotein-amine-dehydrogenase-maturation-protein
MGALLNLVERNLHEVQVDADRMLFHIPSSSLFTADAVTGGIIDTLRQQGCSAEELMQRLGQQFAGSDIQDTLRELIALELVSDGSPLTPEIALKQVERTALNTVVLNVNTGCNLSCTYCYKEDLDKPSAGKKMSTATAEASVEMLLKESPDEQRYSVVFFGGEPLSNRPLIEHMVAYCERRFAEAGKQVEFIMTTNATLLTEEIIDWLNAHRFGLSISIDGPKTVHDRNRITVGGQGTYDVVRRKVDMLLSRYHSRPVGARVTLTRGITDVETIWNHLFNELGFAEVGFAPVTSGDMANFNLTGEELVQVFANMKALGRRYLEAALEHRNIGFSNLHQLITDIHEGHKKALPCGAGLKMLAVDHEGELNLCHRFTGSSLPTFGNVHQGVKQAQLNDFLSQRLDRSNTGCDSCRIRNLCSGGCYHESYARYGDPQHPTYHYCELMRDWVDFGIEVYSRIMAANPAFIDRYITPRKAH
>NZ_CP010359.1|WP_031325501.1|1845202_1846768_+|quinohemoprotein-amine-dehydrogenase-subunit-alpha
MKTTRLRRHAGKLALVAAALLSTQAMAAEQGPSLLQNKCMGCHIPEGNDTYSRISHQRKTPEGWLMSIARMQVMHGLQISDDDRRTLVKYLADKQGLAPSETDGVRYAMERRLNTVEQFDTQLSETCGRCHSGARVALQRRPAKEWEHLVNFHLGQWPSLEYQAQARDRDWLPIALQQVVPDLAKRYPLESAAWAEWQKARPKADALPGQWAFSGHMLAKGDVRGVMSVTPDQGDTFKVEVKGAYADGTPFNGSGSAILYNGYEWRGNVKVGDANLRQVFAALDGEMKGRMFEAEHDERGLDFTAVKEGKARLLAVQPAFIKAGGESEITLVGSGLAGKPDLGAGVEVTEVLEQTPTLVRVKARAAADAKPGQREVAIGALKGVNLAVYDKVEEVKVVPAFSIARIGENGASVPKVQGRFEAEAWGKDANGQPLRIGYLPASWKVEPFNERAVEDEDVKFAGKMQADGVFVPGGAGPNPERKMMTNNAGNLKVIATLADGGQTGEGHMIVTVQRWNNPPLP
>NZ_CP010359.1|WP_013972847.1|1843250_1844744_-|aldehyde-dehydrogenase-family-protein
MLSELPILPATRAFLERKLKMRIGADWQDAASGRTLSFRNPATGEVLGEVPAAEAEDVDRAVRAARQAFDDSPWSRLRPRERQNLLWRLADLMERDARQLAELECLNNGKSAAVAQVMDVQLAIDFLRYMAGWATKIEGSTVEASMPLMPNDQFHGFVRREAVGVVGAIVAWNFPLLLACWKLGPALATGCTVVLKPADETPLSVLKLAELVDEAGYPAGVFNVVTGTGLNAGAALSRHPGVDKLTFTGSTEVGKLIGKAAMDNMTRVTLELGGKSPTIVMPDANLQEAAAGAATAIFFNQGQVCCAGSRLYVHRKHFDNVVADIAGIANGMKLGSGLDPAVQMGPLISAKQQDRVTGYIELGRELGATIACGGEGFGPGYFVKPTVIVDVDQRHRLVQEEIFGPVLVAMPFDDIDEVIGMANDNPYGLGASIWSNDLSAVHRMIPRIKSGSVWVNCHSALDPALPFGGYKMSGVGREMGAAAIDHYTELKSVLIKL
>NZ_CP010359.1|WP_024087216.1|1841784_1843098_-|hypothetical-protein
MRHKLACTLALLFAAPITQAYELYNHDGTTLNADLEALFGAFHSDESFNLAGNRKPGSTAWQEGYVKYGLSGSQALADSGALYGAFNLLSSATWGDGDAAGLTLGDERRTAIEDLYLGWRSANLFPALGEDGVDISGGRQVVTLGDGFLIQGDPVNLGKVDLGANFDRGGAYYLAARKAFDRTAVLRLGGKQGWRSDLMWLKSDNHYQADTSLAVANLEHVADAGTVGLSWIRGLDVDQRYAQIMGLEHRDGMDTASLRGRGNLGVKDLELAAEYVTQDKTGGRENAWYLEGNWTFSELPWSPTATYRYSRFSEDFDPLFYGLSRGYGTWFQGEVAANYAGPFNSNSQVHHVALKGKPRDNLTVGALYFDFDTLDTDQGNLGGRELDLYVEWMVNDHLLISPLVGFYKPERSAANGGTQLGGRDTGTYMQLIVGTFF
>NZ_CP010359.1|WP_024087217.1|1840353_1841646_+|phenylethylamine-degradation-protein-PeaF
MAEPRIVVLGAGPAGAATAIGLRRLGYAVTVVSEWRRFAAVEGVSQRVLDGLRHAGLGGALRQAAMPATRQVHWNGQQLHLNQEFLLDRQRFDRALRDDLQRAGVSVVEGRVREVVREVGHGIRLDDGQVLQADFLVEARGRQAPLAADRLRGPETVSLLNVWQAAPGAPASAVESLADGWAWMARLEDGRCYWQVTLDAAGLPGKAGLADYCAARRAGSVLVAELFDARALAPAEVHARSSTAILAGECVGQDWIRVGDAAMAVDPLSGNGIFQSLSSALQAPVVINTLLRRPERAGLARQFHQQRIEQLFLRFARIGRDFYGQEQGRVGQPFWARRQGWPDMQALHVAADWSAVRVERRPVLRDGLVDEAEVVVTADQPLGVWHLQGVELAPVVRGLRSGRPIEAVLSGLPGEQQMMVRRWLLEQGLV
>NZ_CP010359.1|WP_024087218.1|1839683_1840361_+|peptidase-S8
MGTDVRVGVIDSGCTPEQASALLGARRFWLEDGQLREGDMLPDQLGHGSAVLAGLQREAGPVPVLLAQVFGAQASTSALQVAAALLWLVEAGVTLVNLSLGLQQDRPVLHQACAEALAAGVLLCASSPAQGGPVYPASYPGVIRVTGDARCAPGQWSWLGTRQADFGGYVGAGGRAGASLGCAALSGRIAALLRDEPGMGHQQVHDWLRHHAAFTGPERRGVGHG
>NZ_CP010359.1|WP_041505905.1|1837960_1839694_+|ABC-transporter-ATP-binding-protein
MGGLFARLVESSDPVLMRQALAWLYGFVRPHRRAIGLLLGLSLGASLLALAQPWLVKTLIDEGLLAKDYQTLWHMAAIMIGAGLLGTVLAGVNRYLHTRLSGRILFALRDDLYRHLQQLSPTFYGRRRIGDILSRLDGDVAEIQRFAVDSLFSAVSAVIGLVGAVVLMLMLSWQLSLLLALLVPIEVLWLRWMRRKVAREVRNLRERSADVSSFLVETLPAMKFIQAAGQQGREAGRLDQLGQGYMRQLLKVQVTEFFTQAIPGTLTSWCRACAFLVGGWWVIQGTWQLGALIAFSTYMGMAVGPVQSLLGLYVAVQRMAVSLGRVMELKQEAVAVRPAANPQPVPDGPGELRLEGVSFAHEGRQGAVLNDVQVCVPGGLKVAISGASGVGKSTLIDLLQRFYDPDAGRILLDGTDLRELDLAALRRRIAVVSQDIVLFRGTLAQNLAYGVPEASREELERVVRLARLDSLVDSLPLGLDGLLGERGQQLSGGQKQRIAIARAVLQAPAILVLDEATSAVDEATEREVIAAIDQLFAGRTRILISHRASTLADADLHLQLHAGQLQVLPEEVIRHGH
>NZ_CP010359.1|WP_023661325.1|1851757_1852333_-|molybdenum-cofactor-guanylyltransferase-MobA
MPDALPPCSILILAGGRGQRMGGRDKGLVDWQGEPLVAHVQRVVRPLSDDLVISCNRNQQAYQAYADQLVGDAEADYPGPLAGVIAGLKVARHEWVVLLACDAPLVDRGLIEDLLHLAVTSDSAAMVRQGGYWQPMFSVLPRRVLPVLEQAWVAGERSLQKALQREAVQGLECVDDDRRLSNFNSPELLQG
>NZ_CP010359.1|WP_023661326.1|1852394_1855523_-|multidrug-efflux-RND-transporter-permease-subunit
MPQFFIDRPVFAWVVALFILLAGALAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDESVVSLIEQELNGADNLLYFESQSSLGSATITATFAPGTNPDLAQVDVQNRLKVVESRLPRPVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLKGVGKAQLYGSERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPIRGTQEITANVVVKGQLSTPEEFAGIVLRANPDGSTVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAMETATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENVERIMAEEGLPPKEATRKAMGQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCATLLKPVAKGEHHERKGFFGWFNRRFEGMSNGYQRWVVQALKRSGRYLLVYALLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIEAHNAEEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSERGADDSAQSIADRATMAFTQLKDAVAYSVLPPPIDGLGESTGFEFRLQDRGGMGHAELMAARDELLANAGKSKVLTNVREASLAESPQVQLEIDRRQANALGVSFADIGSVLDVAVGSSYVNDFPNQGRMQRVVVQAEGDQRSQVEDLLKIHVRNDSGKMVPLGAFVQARWVSGPVQLTRYNGYPAVSISGEPAAGYSSGEAMAEIERLVAQLPAGAGLEWTGLSLQERLSGSQAPMLMALSLLVVFLCLAALYESWSIPTAVLLVVPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKSLVDQGVDAADAAVQAARLRLRPIVMTSLAFILGVVPLAIASGASSASQKAIGTGVIGGMLSATLAVVFVPVFFVVVMRLAGRRQAGKADTQAVTSDS
>NZ_CP010359.1|WP_038409715.1|1855534_1856710_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MSTTLPPRLRPLALLAFLSLSLAGCDDSAEQEEQAPTPQVRVETLQLQPLAISSELSGRILAPRTAEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATLYQARLQEQRYRELVDDKAVSRQEYDNAKASYLQADAAVAEARAALERARLNLGYATVTAPISGRIGRAQVTEGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRAMRAGELQQVGDGQARATLIQDDGSTYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVPQRAILRDSAGVPKVLVVDPQARVSDRQVVLGSAQGDRWIVSEGLAPGERVVVEGLQHVKAGDQVQVDNASGASPIAQHTGQ
>NZ_CP010359.1|WP_003259958.1|1856981_1857683_+|response-regulator-transcription-factor
MPNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLPGIDGLQLCRLLRQESQGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVLNRDRILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEWEC
>NZ_CP010359.1|WP_013972839.1|1857689_1858988_+|two-component-sensor-histidine-kinase
MLKILVRLYLVIIVAYAGALLFIPDTIVGLFQDRFMAYNLDQAKGVQSLIVRQFRQAPREQWPAVEQELASDFAPLELQLLRMDQADLSEDEQARLEHGLYAVRIAEWGYYETVLAPLDKEWLVRLHSPPDPLDINVLSWGVTVLIGAAMLGCLLLWVWPHWRDLERLKETARRLGQGQMAERTHISPHSNIGELAGVFDTMASDLERHVNQQRELLNAVSHELRTPLTRLDFGLVLLFDEVPPASRKRLLELVGHVRELDELVLELLSYSRLYNADQARERVEVSLLELVDSVLGGFAEELDGRGIQWEVRAEGDLPRFVLDPRLTARAVQNLVRNAMRYCDESLLLRLRLEDDGACLVTVEDDGIGIPVEERERIFQPFYRLDRSRDRNTGGFGLGLAISRRAIEGQGGTLTVAQSALGGAQFRIRLPAG
>NZ_CP010359.1|WP_023661513.1|1859104_1860196_-|GGDEF-domain-containing-protein
MFKTIEAHVRKQVAPAALRAEFRQHEFEVMRPFCLLVFCVSILIWLVFDLIVSFLGGQGFTWLSYLFITLLGSLTVVLRFTRRSHHFDVLNLLFIAAITLGMRLVIEGIPVAQRPVWLVLGVSTVLYAVSVLPVRRWSFFCAMAITWVVLNPFYHTRIGPDELEGAMLISYAVFLSGLVIYSYLQMRKAKLHNFYLSKVLLDQAYVDALTEIPNRRSFMAQAGHQLRLATTEQYLAMIDIDNFKRVNDRFGHDVGDEVLKRVALHIKASMAGYEFARLGGEEFAIFFQGLDQQGAEQRVAALCQRVREDVGEHPVTISIGLARVDQGDSLTTALVRADQALYEAKHSGKDRFVLWSARLAESD
>NZ_CP010359.1|WP_041505907.1|1860335_1861175_-|DUF4434-family-protein
MRTFLALCLVALCLPASADQRLFYQPLNRDANVTPAQWQQLWHATVAQGGKTLIVQWSAYGDSDFGGARGWLADSLRSARAQGLQLVLGLYMDPAYYQRIDELDGEGLNSYWKAQLGRSLSQYRQLRQAWQLPVDGWYLPMELDDHHFREAERRDALHSQLQAFNRQLDKPLHISAFSAGKLSPRVNAAWLDQLAGLGLTVWWQDGAGTGRLPALVRQGYEQALPCRVGVVREAFRQVSAPGQAFRAEPAQPKLGAGCHAEAVFDLRYRPWARGVLPTN
>NZ_CP010359.1|WP_041505908.1|1861174_1864180_-|phage-receptor
MKPRFSLTFTGLLLCSAALPCAASAPMTDFQRFTSYPFMERSYREAKKDNWAEVERLTRHVLGRVPNNDEARALLVEALAHQRRYKEAEALAEQLGDSPEHANALLELRLTWIEQDPPPASQVEQWLASSDGAQRVRLWQAYSLSLARFGGAARALDWLNHLPAQGDGQVLRLARANFAEQLRNWKETIEQLQPLAEQGQLPAQDWQRLANAYIQQVDEKGLKALLPSAPSPDAANQARLAMANRAIAVGHNQQAQRWLQALPTAELNQPEQRQQLWELAREGDDAPLVQRLSNELQRPCLETVDWLSLHDPQLAREQFKGCTASTAPRAYAVLKQRLYGDPPQPPQPRTAAEWEQRYRQSGDMAVLEQTTFLLMQQGHDEHARQLLEQAYDRHQGRLAPSLLQRLGNLYARNDGPLDARRMLGLVPRVNATTRAQLLGRLAEAGQCDAVHQAVPATPSEPGQYRALGRCAMPDQPGEAVVYYQAAERLGDSGSRLPLAYALEAAGDSEAALPIWRTQPDSAWTDNARLTAARGALNAGDAQAARRYWDAAAHDSADDWALGAAIAQRQGDYQAALGFQRQALAHNPRADHYYAASSTAQLAGDSAQSSAWLAEAVRLAPDQPRYRADYGMRLAGSTYKAQRRQSIPYLERATQDFPEDYRLGETLALRYDEAEDSASARRELRRILDVEQELVDGDDEYGSLEARKYRQRRAHESLSRRDTITLASTWSPAGTSTNDKFLDNGQRSGTSRRAQSQNVQLAMWDHALGEEPSRNGSTLSVYGRVLFGGQSRTDYAQSMGTGVGLRYKPFGQANLNLYAELYHQRQIDEEHYRGLSLGQLLSPAKVGGNWGDLRHHAESSNDLLLRATASFLDQGDWRNDWRVDEDDWNERFLYLDAAWWTRAGDHAWLSRYQQGHAWKLPGSSPQTIMPYGFVEFSSQDPSNDWRQDARAGVGVRWQWWFDDDRYNAYRGSLKVRAEYQQSLGGNLYERANGVLVGAEMTF
>NZ_CP010359.1|WP_038409713.1|1864176_1866351_-|phage-adsorption-protein-NrfB
MSLVFIDFLTYVLFGLKILAIILASLMFLLGLDDLFIDLCYWGRKLIRRFRIYDKYEKADEKRLFEVPEKPLAIMVPAWNEVGVVGEMARLAASTIDYENYQIFVGTYPNDPQTQADVDAVCLHYPNVHKVVCARPGPTSKADCLNNIIDALLRFQQDAGIEFAGFILHDAEDVISPMELRLFNYLLPNKDMIQIPVYPYAPEWKGFTAGHYVDEFAENHGKDVIVREALTGQVPSAGVGTCFSRRAISALLEDGDGIAFDVQSLTEDYDIGFRLKQKGMKCIFARYSIADPALTLKQEWRPGMSREFSQVICVREHFPRDWQHAIRQKSRWIVGIVFQGTSNLGWSRKGALNYFLWRDRRGLFAYLLSFLVNLLLLVLLAMWLVTVIAPESWRFMSILSDSWLLTTLLWLNGLMLFNRLFQRAWFVTRFYGIGEGLLSAPRMMWSNFVNFFANLRALRQVMEMGDSRRVAWDKTTHEFPAIAAPARTPLGQRLVAKGLISDEQLQQAITSPVRRRLGRELLLRGWLNSEQLVATLAEQMDLPWAPLNPFKLDPQLIAKLPRKLATHYGVLPVAEDGDTLVLASESPVSQVSLGVISRHLKRPVSARLAPQGRVTLGLRYHYPSPWQKPETRDMLAILERHQDDEQLLEQVSHHQVMLGALLQVRGMVPVTLFNQALIDFDPEHQSLGEHLIARGIITEQVLQQALIEQASEQQAAFDLTREVA
>NZ_CP010359.1|WP_003259966.1|1866544_1866976_+|PACE-efflux-transporter
MQGKARKIVQAILYEAIAVACVAPALELAFGAGMAQSTVLSVLMSGIAMSWNMAYNWVFERWEARQHRRERTFLRRLLHALGFEGGLVLILLPLVAYWLDVSLWAALLTNLALFVFFFVYAFVFQWGFDKVFDVPLSAQQAKC

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Crispr_ID: NZ_CP010359_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010359_2

2897153-2897251

Orphan

Consensus_repeat	Method
AGCCCTTTCGCGGGCAAGCCCGCTCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010359_2

>merge|NZ_CP010359|2|2897153-2897251|CRISPRCasFinder
AGCCCTTTCGCGGGCAAGCCCGCTCCTACCTTGACCGCACAGGCTTCAAGTCTTGGGCGGTCCCTGTGGGAGCCCTTTCGCGGGCAAGCCCGCTCCTAC

>NZ_CP010359|2|2|2897153-2897251|CRISPRCasFinder
AGCCCTTTCGCGGGCAAGCCCGCTCCTAC	CTTGACCGCACAGGCTTCAAGTCTTGGGCGGTCCCTGTGGG
AGCCCTTTCGCGGGCAAGCCCGCTCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010359.1\|WP_015269943.1\|2907881_2909306_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP010359.1\|WP_031325920.1\|2892813_2893482_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372616
NZ_CP010359.1\|WP_013972055.1\|2900017_2900728_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP010359.1\|WP_013972058.1\|2895757_2897131_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP010359.1\|WP_013972050.1\|2906149_2907559_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|273797
NZ_CP010359.1\|WP_041506090.1\|2874722_2885495_-\|heme-peroxidase	unknown	unknown	gnl\|CDD\|188653
NZ_CP010359.1\|WP_015269957.1\|2886039_2887776_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP010359.1\|WP_041506091.1\|2893559_2895467_-\|sugar-phosphate-isomerase/epimerase-and-4-hydroxyphenylpyruvate-domain-containing-protein	unknown	unknown	gnl\|CDD\|225726
NZ_CP010359.1\|WP_024086771.1\|2900825_2902217_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274522
NZ_CP010359.1\|WP_003259277.1\|2902232_2903549_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225180
NZ_CP010359.1\|WP_003259286.1\|2873874_2874483_+\|L(+)-tartrate-dehydratase-subunit-beta	unknown	unknown	gnl\|CDD\|236192
NZ_CP010359.1\|WP_031325771.1\|2890543_2891407_+\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP010359.1\|WP_023661575.1\|2897335_2898748_-\|amino-acid-decarboxylase	unknown	unknown	gnl\|CDD\|215475
NZ_CP010359.1\|WP_023663259.1\|2887782_2889123_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP010359.1\|WP_023661576.1\|2898929_2899874_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP010359.1\|WP_031324779.1\|2904863_2905235_+\|DUF2784-domain-containing-protein	unknown	unknown	gnl\|CDD\|378502
NZ_CP010359.1\|WP_013972053.1\|2903793_2904663_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132382
NZ_CP010359.1\|WP_023661943.1\|2905224_2906001_-\|trans-aconitate-2-methyltransferase	unknown	unknown	gnl\|CDD\|234970
NZ_CP010359.1\|WP_023663258.1\|2889124_2890453_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP010359.1\|WP_013972061.1\|2891424_2892786_+\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350

Protein	Function_ID	Function_description	E-value
NZ_CP010359.1\|WP_015269943.1\|2907881_2909306_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	5.64316e-111
NZ_CP010359.1\|WP_031325920.1\|2892813_2893482_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.64575e-12
NZ_CP010359.1\|WP_013972055.1\|2900017_2900728_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	2.92765e-108
NZ_CP010359.1\|WP_013972058.1\|2895757_2897131_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.1829e-153
NZ_CP010359.1\|WP_013972050.1\|2906149_2907559_-\|amino-acid-permease	gnl\|CDD\|273797	TIGR01773, GABA_permease, gamma-aminobutyrate permease. GABA permease (gabP) catalyzes the translocation of 4-aminobutyrate (GABA) across the plasma membrane, with homologues expressed in Gram-negative and Gram-positive organisms. This permease is a highly hydrophobic transmembrane protein consisting of 12 transmembrane domains with hydrophilic N- and C-terminal ends. Induced by nitrogen-limited culture conditions in both Escherichia coli and Bacillus subtilis, gabP is an energy dependent transport system stimulated by membrane potential and has been observed adjacent and distant from other GABA degradation proteins. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP010359.1\|WP_041506090.1\|2874722_2885495_-\|heme-peroxidase	gnl\|CDD\|188653	cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial family of heme peroxidases. Animal heme peroxidases are diverse family of enzymes which are not restricted to metazoans; members are also found in fungi, and plants, and in bacteria - like this family of uncharacterized proteins.	0
NZ_CP010359.1\|WP_015269957.1\|2886039_2887776_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP010359.1\|WP_041506091.1\|2893559_2895467_-\|sugar-phosphate-isomerase/epimerase-and-4-hydroxyphenylpyruvate-domain-containing-protein	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	1.61461e-142
NZ_CP010359.1\|WP_024086771.1\|2900825_2902217_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	0
NZ_CP010359.1\|WP_003259277.1\|2902232_2903549_-\|MFS-transporter	gnl\|CDD\|225180	COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism].	6.67855e-125
NZ_CP010359.1\|WP_003259286.1\|2873874_2874483_+\|L(+)-tartrate-dehydratase-subunit-beta	gnl\|CDD\|236192	PRK08228, PRK08228, L(+)-tartrate dehydratase subunit beta; Validated.	2.42239e-151
NZ_CP010359.1\|WP_031325771.1\|2890543_2891407_+\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.2347e-54
NZ_CP010359.1\|WP_023661575.1\|2897335_2898748_-\|amino-acid-decarboxylase	gnl\|CDD\|215475	PLN02880, PLN02880, tyrosine decarboxylase.	2.67252e-142
NZ_CP010359.1\|WP_023663259.1\|2887782_2889123_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.42905e-114
NZ_CP010359.1\|WP_023661576.1\|2898929_2899874_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.36132e-58
NZ_CP010359.1\|WP_031324779.1\|2904863_2905235_+\|DUF2784-domain-containing-protein	gnl\|CDD\|378502	pfam10861, DUF2784, Protein of Unknown function (DUF2784). This is a family of uncharacterized protein. The function is not known however it is conserved in Bacteria.	1.39537e-36
NZ_CP010359.1\|WP_013972053.1\|2903793_2904663_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|132382	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). [Regulatory functions, DNA interactions].	1.27012e-133
NZ_CP010359.1\|WP_023661943.1\|2905224_2906001_-\|trans-aconitate-2-methyltransferase	gnl\|CDD\|234970	PRK01683, PRK01683, trans-aconitate 2-methyltransferase; Provisional.	1.24465e-119
NZ_CP010359.1\|WP_023663258.1\|2889124_2890453_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	3.20301e-80
NZ_CP010359.1\|WP_013972061.1\|2891424_2892786_+\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	1.01681e-58

>NZ_CP010359.1|WP_013972058.1|2895757_2897131_+|MHS-family-MFS-transporter
MAHSSSQAKKATASGWIGSALEYYDFFIYAQAAALIFPQIFFPNTDPKMAIIASLATYGVGYLARPVGAFVLGHWGDTRGRKNVLLLCMFLMGLSTMAVGLLPTYHDIGLLAPALLVVLRLVQGFAVAGEISGASSMIMEHAPFGRRGYYASFTLQGVQAGQVLAAAVFLPLAYFMPSEAFNDWGWRIPFLLSAFVLIAGFIIRKEVHETPAFVKEEKQDKVAKSPISEAFRHSWKHMVLVMFMALMNVIPVVATIFGAAYAVQPAYGIGFDKSVYLWIPVVGNIVAVLVIPFVGNLSDKIGRRPTMIAGCLGSGLLAFVYLYAISIQNVPLAFASSIVMWGMVYQGYNAVFPSFYPELFHTRYRVSAMAIAQNIGTMLTAMLPALFALVAPPGSDNIPLVVGSLAFFITCVCALAAYIAPETHRLAMEDLGNPDAKPMDKTAYEASRKGSFQAVSN
>NZ_CP010359.1|WP_041506091.1|2893559_2895467_-|sugar-phosphate-isomerase/epimerase-and-4-hydroxyphenylpyruvate-domain-containing-protein
MQRSIATVSLSGTLPEKLEAIAAAGFDGVEIFENDLLYYAGSPRQVRQMCADLGIAITLFQPFRDFEGCRRDRLQKNLDRAERKFDLMQELGTDLVLVCSNVQADALGEEQLLVDDLRLLAEHAGKRGLRIGYEALAWGRHVNTYQQVWNLVRQADHPALGVILDSFHTLSLNGDPSAIRDIPGDKIFFVQMADAPILAMDVLEWSRHFRCFPGQGEMDMAGFLAPILATGYRGPLSLEIFNDGFRAAPPRQNAADGLRSLLYLEEHTRLRLEQEGTSIEPGVLFTPPAASAYDGVEFLEFAVDEAVGARLGSWLKRLGFADAGKHRSKEVQLLRQGDINIVLNAEPYSFGHNFFEAHGPSLCATALRVKDQQAALKRATAFRGQPFRGLVGPNECEVPAVRAPDGSLLYLVEQGTAGQTLYDTDFSLDKNATATGGLRRIDHMALALPAESLDSWVLFYKSLFDFEADDEVVLPDPYGLVKSRALRSQCGTLRLPLNISENRNTAIAHALSSYRGSGVHHIAFDCDDIFREVARAKLAGVPLLEIPLNYYDDLAARFDFDDEFLSELAYYNVLYDRDAQGGELFHVYTEPFEERFFFEIIQRKGGYAGYGAANVAVRLAAMAKARSGAARKPVL
>NZ_CP010359.1|WP_031325920.1|2892813_2893482_+|methyltransferase-domain-containing-protein
MRNPEDALLDSWQHNAQAWIDAVRSGSIDSRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALGDRGVEAVGVDGDRALVDAARAAGSAEVHLASYAQLAAAQAYVGKDYDLICANFALLQQDIIPLLAAMNALLAPGGALVIQTLHPWSVADGDYQDGWREESFAGFGGDWQVMPWYFRTLASWLNALDMAGLRLVSLQEPQHPQSALPQSLLLVAERP
>NZ_CP010359.1|WP_013972061.1|2891424_2892786_+|chromate-efflux-transporter
MTEHLQGAAEQTRGHISRIEALLFWLKLGFISFGGPAGQIAIMHQELVERRRWISERRFLHALNYCMLLPGPEAQQLATYIGWLMHRTWGGVIAGTLFVLPSLFILIGLSWVYLAWGEVPVVAGIFYGIKPAVTAIVVHAAHRIGTRALKNGWLWAIAAASFVAIFALDVPFPLIVLAAALLGHVGGRLLPGQFAPGGGHGATRASQGPAVIDDDTPAPEHTRFSWGRLLGLLLVGAALWLLPMGVLMATFGWQGTLTQMGWFFTKAALLTFGGAYAVLPYVYQGAVGHYGWLSPTQMIDGLALGETTPGPLIMVVAFVGFVGGYLHPMFGTDQAFMAGAVAASLVTWFTFLPSFLFILAGGPLVESTHNELKFTAPLTGITAAVVGVILNLALFFGYHVLWPAGFDGRFDWPSALIALAAAVALFRYKRGVIQVLIACALAGLATHLLTGAQ
>NZ_CP010359.1|WP_031325771.1|2890543_2891407_+|sensor-domain-containing-diguanylate-cyclase
MPVDLQALYPRLIHLMLDTVFVVDRGNQIIFVSDACEALLGYQACELIGTPITDYMHPDDLAITRASIVRVMNGQPHYDFRNRYIRKDGSIVHILWSASWSDEANARIGVARDITAQHQAEEELRFLAHHDPLTRLANRAMFNERLGTALVAARHHNHPLALLFIDINDFKDINDNHGHSVGDRVLCILARRLEGCVGATDTVARMGGDEFTVLLTDYASPEAIAEQVARILAAMAEPLGAEFAGIGAPSCSIGVARFPEDGNDADMLLRHADGDMYRIKRQRAAAS
>NZ_CP010359.1|WP_023663258.1|2889124_2890453_+|TolC-family-outer-membrane-protein
MNRPCLMLCLLGLSVQASAMDLKQAWDLLQYQGPIYRAAVHEKEAGSENRAIGQAGLLPQINAVGYFNKVNGSQRQSGRDNDLDYDSKGANVRLRQPLFNKQKMAEYHQGQQRADYSVAVFDAKTQDAAVRLADAYFDVLLASETITLAKAKLNAFEEQLASAKRRMELGAGTITDIDESIARRDLAEADLIEAQDNLVNARRKLEEYIGETPESLTTLQPGFNTPPLMPGNLQDWLVKAQADSPLIHARRHNYELAEEEVKRARAGHWPTLDFVAGYTAGSSQSISELNQRNHYSSIGLELNIPLYSGGSTSALTRQASANSSKALDELDATRQEVISDTTREYRGVQSGALRIQALEKAVASNERSLLSARKGFREGGTSTNSDVLNAEELLFDARHDLFEAKLNYLMSRLRLASSVGSLGDDDIQQINDYLGPELVVSN
>NZ_CP010359.1|WP_023663259.1|2887782_2889123_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MQMTQHTELIPAEARNEIDLDIHRPARWGVWLVAAGFGGFLLWSGLAPLDAGVVATGTVKVSSNRKAVQHLTGGTVEAILVREGDVVKKGQEVVRLDALRAVAEQGAVSAQYIVSKTVENRLEAERDGRDQVTFDPALLKHYGGDPRLLAAMDLQQRLLDTRRAGLAGELSILEENLAATAVQLKGLQQVYGARASQIGFLNQELQGTRVLAAEGYVPRNRLLELERNNADLSAGQAENLNNIARARSQATEIKLRILQRQHDYLKEVESQLTDTAKENTTLADRLRALDYEVTHTVIRSPIDGMVQALSIATVGGIIQPGAKIMEVVPLDQPLQVDAMIPVQAIDKMVPGLDVDLAFPAFNHAKTPNIPGRVKTISADRLMDEESKQPYYLAQVEVTQDGMALLGSNHIRPGMPATVTIKTGERNLLSYLLKPMLERVDASFKEQ
>NZ_CP010359.1|WP_015269957.1|2886039_2887776_+|type-I-secretion-system-permease/ATPase
MHKPPRTRSELADVLFRLRRSFFALAAFSGVINVMMLTPAIYMLQVYDRALVSRNVTTLTMLTLLVIGLFMLMSALEMVRTRVLIRVGNFLDMDLNRRIFSAAFERNLSRAGGNPAQALQDLAQVRQFLTGNGLFAFFDAPWTPIYLLVCYLIHPLLGLVTLIGSLILVGLAYLTEKATQKPLAEANQAALSSASYANNNLRNAEVIEAMGMLPAIGKRWFQGHLRILQMQTLASDRAAIISSTGRFVRITLQSVILGAGALLAIEGKITPGMMIACSILTGRALAPVEQVIAAWKQLQGSRSAWGRLNDLLHDYPQRPPSMSLQRPMGMLAVENVVAGAPGTSNSIVRGVSFSLVPGESLGIIGPSASGKSTLARLLVGVWPTQAGKVRLDGADIFTWNKAELGPWLGYLPQDVELFEGTIAENIARFAEVDSEAVIRAARSSGVHDMILRFPQGYDTRLAADGSPLSGGQKQRIALARALYGEPNLVVLDEPNANLDDVGEKALVDALAELKARGATVILISHRPNVLCAVDKVLMLRDGAVHMLGSRDEVFAALRKASVIPTATAAPLASVKVRE
>NZ_CP010359.1|WP_041506090.1|2874722_2885495_-|heme-peroxidase
MADFSKSDLEFILQQIFIAEAHADGASLIDLLPNSQVPFGLRTVDGSYNNLVTGQSEFGAADNSFLRLLSPSFTGDYAGTGTVIDSQPRTISNLIVDQTANNPAAVEANGGAAPVISPGIDGVFGTADDTEVFFIPNVSPDVGLTAGFNAWMTFFGQFFDHGLDLVTKSSTDVVFIPLQPDDPLYVEGSPTNFMVLPRAVRTAGADGVVGTADDGQTNTTSPFVDQSQTYSSHPSHQVFLREYTLNAAGDPVATGRLITNRDLGADGRFGTADDGNGESGGMATWAVVKAQARDLLGINLTDADVHSVPLLATDPYGNFLRGPNGMPQVVMRVNNGADGIAGTADDVTTLVEGNRDAPISLANAVSTGHGFLDDIAHNAAPVIVNGVLQADADIAVGNAQPTGPGGNNLTYDNELLDAHYIAGDGRVNENIGLTAVHHVFHSEHNRLVQQTKDTLLAAGDLAFLNQWLIDDVAAIPTTPAEIAALVWDGERLFQAAKFGTEMQYQHLVFEEFARTIQPQIDEFLAPNGYDTSIDPAILAEFAHVVYRFGHSMLTETVDRYDPTFATVNDDPQLGLIAAFLNPLAFAGSGATADEAAGAIIRGVTRQLGNEIDEFVTEALRNNLLGLPLDLPALNIARGRDTGIPTLNEARREFYAMTGDSQLKPYISWADFADHLKHPASLINFIAAYGTHATITGADTEAAKRAAAVALVLGGDGAPADRLDFLNGTGAYANVTLAGADGIAGTADDITGVTVTGVDAIDFWVGGLAEKKMPFGGMLGSSFNFVFETQLEALQNGDRFYYLSRTAGMNFGTELENNSFAKLIMLNSDVTHLSNTVFLTPTFTLEVDQTKQFTGLGADGRADPTGGIMINGVEVVSLVIRDNPDTVNTPDTGPDTNYLHYTGEDHVVLGGTAGADIIIAGEGDDTLYGDGGNDLLEGGAGNDAVLGGAGDDIITDSFGDNRLEGNDGNDVIVAGSMLVGGNLILGGNGQDFIITTEDISTTFGGQGDDFILGAKTNLPPTGNEGDDWIEKGTQDGAPGDNFAPLLGDEVVGNDIFVGGGGFDEMIGEGGDDIFVGSDAQDKMDGMSGFDWITNKNDQVGVTVDLTLAALAQPHGNAPNQNTGIFNPVGASPASILDRFAEVEGVSGSNFADVLKGDNVDAVTILNHGGATGSALTNVALIRGLQQFLADAGLPTTGFATGNIMLGGNGSDLIEGRGGDDLIDGDKWLNVRIAVYAPGDVNHTGPEIASFDSMVDMIPFMLDRTYNPGQLKAVREILPGTSTGGAAFDTAVFSGVQSEYTVTQNTKGTLDTSDDVWTVTDNVAGRDGVDTLLHIERLQFADSQRVLVEGLNAQPVGSPTVTDNNGGAITVGDLLTVNVAGVRDADNISAGNPLGTLADRSVSYYWQFEATPGSGVFEDIILLPAGDLAFQSADGTTFKVSPDLAGLSLRVKAIYQDAHGTTEVLFSQPTTVVQPGAPVVPTPATPVVDATAGGAGLHMVRSDLNFILEQIKIAEADANGADILSLLPNIRAPLGLRAVDGSNNNLMNLNGINNTEFGAADNVFPRVTDPVFNPAEGAPAGFFGPGSPAIPGSSYEQTSGPVFDSQPRTISNLIVDQTSNNPAAYATAYDPGADGVLNFGVEGNDDVLKDGVRIVASPGLDGQFGTDDDHDVYLFENTAADAGLSAPFNAWMTFFGQFFDHGLDLVTKGGSGTIYIPLQPDDPLYVEGGFTNFMVVTRATNQPGPDGVLGTADDIHEHTNTTSPFVDQNQTYSSHPSHQVFLRGYVLTDDGPIATGRLITNRDLGADGRYGTADDTEIGGMATWKVVKAQARDVLGINLTDADVDNVPLLATDAYGNFIKGPNGFPMVIMKGADGIAGTADDQQVEGNPLAPIDLTNAVRTGHQFLADIAHNAVPVFSNGVLVPDADTDVGNAVPVNPQTGANLAYDNELLDAHYIAGDGRVNENIGLTAVHAIFHSEHNRLVAQTMDTVLDSGDLAFINEWLLNPLSALPANQAEIDALVWNGERLFQAAKFGTEMQYQHLVFEEFARTVQPRVDLFFAPTQVYDVDLDASIVAEFAHTVYRFGHSMLTETVDRFDVDFTVISDPASANPDQQLGLIAAFLNPLAYAASGVTPEDATSAIVRGVTRQAGNEIDEFVTEALRNNLLGLPLDLPAINIARGRDVGIPSLNAVRRDIYAQTGDTQLKPYTSWVDLVQHLKHPESLINFIAAYGTHSTITGATTLLEKRAAAMALVFGGDGAPADRLDFLNSTGAYANVTLPGKDGVLGTVDDLRAVTVTGVDAIDLWIGGLAEAKTPFGGMLGTTFNFVFENQLEKLQDGDRFYYLERTAGLSMNAELESNSFAKLIMANTSATHLPGLVFSDVGFYLEVDQSKQFNEGLGNADPLGENGEQVVFRDSPLTVGPDTNYIRYAGDQHIVLGGTNGDDILVSSEGDDTVWGDGGNDRIEGGDGNDQLRGGAGDDIISDMGGDDNIQGGDGNDVLHGGNGINLIIGGFGNDFIVTGEDASEAIGGQGNDFILGSKANEQDMGNEGDDWIEKGTSDGAPGDNFDPLGNDPIIGNDVFIGGNENDKFNGEGGDDIMVGSLGFGDRYIGGSGYDWATFKGLAQGVTVDFSDRFFDVPPVPGSGASALVRFDIMEGLSGSAHGDFLRGDSETSATLPTNGANGSVLTNISLINGLSSLLAAGATFYDGGNIILGGSGSDLIEGRGGDDILDGDKWLNVRISVRANSDGTGPEIASYDSMEPMVPLMLNGTYNPGQLVIVREILNGTDSYDTAVYSGVASDYSVVVDGNSVIVTDSVAGRDGVDRLTGIERLQFSDSSQASGVGTAVNAGPTGSLVILDAATGVRDDTPVSGQLLRVTPLAVHDADNVSATNLTGAITGPVAYYWQVETLPGSGVYEDITFVAAGEVSRAVGTTYRVTDDVAGLNIRVRAVYQDTKGTLEIVDSAPNNAPTAGPTVTGLLVQNQTLTANPATIVDADGLSNPRFTFQWQSNRGTGWVDIAGAINSTFLLTQNQVGQNMRVVVSYVDDFGVQESIASDILDPVANVNDAPTGAVLISDTTPDQGQTLTALTGSIADLDGLGAFSFQWQQNIGGTFSNIAGATAATFTPGFEQGNRQLRVVVSYTDAFGTLETLTSAATAAVVPPAGVVLVGTAGANTLTGGAGNDTLSGLGGNDVLNGLGGADQLFGGDGNDILNGGNDPDSLDGGAGNDTLNGGLGADAMVGGAGNDTFVVDNLGDTVSEALNGGVDLVQTTLASYTLGANVENLTFTGAGNFTGTGNTLANTITGGAGNDLLDGGAGIDRLVGGLGDDTYVVDNAGDVVVEATAAGTDTVRATAASYTLGANVENLTYIGAGNFTGTGNGLANVITGAAGNDTLNGDGGNDQLLGGLGTDTLNGGAGDDTLDGGAGNDSLFGDTGNDNLQGGAGDDNLDGGNGVDVLQGGDGNDTLFGGVGNDTLQGGAGNDFLNGAAGNDTVVGGAGDDTMMASDGNDVFQFAAGFGNDLIINFDAVPQGGQDRLDISALNITAATFAANVTIADVGNDTLVSIGATDSIRLVGVADATTVTVADFNLAG
>NZ_CP010359.1|WP_003259286.1|2873874_2874483_+|L(+)-tartrate-dehydratase-subunit-beta
MKKILSTPISDEDLANLNVGDVVYLTGQLVTCRDVAHRRLIELGRELPVDLRGGAIFHAGPIVRKKDDGSFEMVSIGPTTSMRMEKFEKQFIEQTGVKLIVGKGGMGPETTTGCLENKAVHAVFPGGCAVLAATQVEEIERAEWQDLGMPETLWVNRVREFGPLIISIDTKGNNLFEQNKARFNERKGAVIEKINSQVRFIK
>NZ_CP010359.1|WP_023661575.1|2897335_2898748_-|amino-acid-decarboxylase
MTPEQFRQYGHQLIDLIADYRQSVGERPVMAQVEPGYLKAALPAQAPRQGEPFAAILDDVNQLVMPGLSHWQHPDFYGYFPSNGTLSSVLGDFLSTGLGVLGLSWQSSPALSELEETTLDWLRQLLGLSGQWSGVIQDTASTSTLVALICARERASDYALVRGGLQAQAKPLIVYVSAHAHSSVDKAALLAGFGRDNIRLIPTDERYALRPEALQVAIEQDLAAGNQPCAVVATTGTTATTALDPLRPIGEIAQAHGLWLHVDSAMAGSAMILPECRWMWDGIELADSLVVNAHKWLGVAFDCSIYYVRDPQHLIRVMSTNPSYLQSAVDGEVKNLRDWGIPLGRRFRALKLWFMLRSEGVEALQARLRRDLDNAQWLAGQIGAAAEWEVLAPVQLQTLCIRHRPAGLEGEALDAHTKGWAERLNASGDAYVTPATLDGRWMVRVSIGALPTEREHVEQLWARLQEVVKG
>NZ_CP010359.1|WP_023661576.1|2898929_2899874_-|LysR-family-transcriptional-regulator
MNPAFASLSLAHLRTLDHLLQLKNLSHAAERLGVSQSALSRQLAHLREAFDDPLLVRQGRGYVLSEHAEALVEPLRQVLEELHALRQPAVFDPGRCERRFCLAASDYVAEHMLPLLVAALEREAPGVSLEYRTWQAGQYALLASGEIDLATTLFDESPPNLHGRLLGEDRAVCLMRNDHPLAAHGALSQADYLGHKHVRISGGGDKDSFIDRHLRAQGLQRRVSLEVPFFSATVQVIANSQALATVPEHIARQLCRLHDLAWRPLGFIDHSQRYWVVWHQRLQASAEHRWLRNRVFELWRQSQFGVQGGHAGLP
>NZ_CP010359.1|WP_013972055.1|2900017_2900728_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGAQWKAKHKEAAANAKGKIMGKLSKEIQIAAKSGADPDMNPRLRLAIEQAKKASMTRETLERAIRKGAGLDGDAVQYSAVSYEGFAPHQVPLIVECLTDNVNRTVAQIRVLFRKGQLGASGSVAWDFNHVGLIEATPNGDADPEMAAIEAGAQDFEEGDEEGSTLFITDTTDLDAVQKALPEHGFTVTSAKIGYTPKNPVSAASLSAEALAEVEAFLEAIDENDDVQNVYVGLTD
>NZ_CP010359.1|WP_024086771.1|2900825_2902217_-|FAD-dependent-oxidoreductase
MRPFWLQQALDSAQEAVCPPLQGDARCDVCIVGGGYTGLWTALMLKEAVPALDIVLIEADICGAGASGRNGGCALSWSAKYFTLERLFGVAEAVRLVRESERSIGEIGAFCAANGIDCDYRLDGTLYTATNAAQVGATDAVIAALEQKGINSFRRLPLQQLQRLAGSARHLEGWFSPAAATVQPGKLVRGLRRVALQRGVRIHEGTAMTGLEHGAPVQVRTAHGTVRADRVVLGLNAWMARAFPQFERSVAIVSSDMVITEPCPELLHQIGLDSGISVLDSRIFVHYYHNTSDGRLMLGKGGNTFAYGGRMLPVFDQPSPYRPLLRESLGGFFPALAQVPLAASWNGPSDRSVTGLPFFGRLNGQGNVFYGFGYSGSGVGPCHMGGQILSSLALGLDNPWTRSPLVKGPLGLFPPEPIRYLGSLMVRNAIRRKERAEDRGQRPRRLDVRLARFAAAAGKADKG
>NZ_CP010359.1|WP_003259277.1|2902232_2903549_-|MFS-transporter
MNQSLAAFKRWRIQIFAITWLAYAAFYFTRKAFSVAKLGIGEDPDFMLDKAAMANLDAIYLAAYAVGQFTWGMLADRFGPRVVVLGGLLISAVAAVVMGSYATFPIFATCMLVQGLAQSTGWAGLCKNIGSFFPASQRGRVLGLWSSCYAFGGLVASPFAGWWAYTLVGTWHAAFFSSAAVVALVAVLFFFLQRNKPEDVGLPAVEPEPQSMAPAGNLCSVWAPLKEIMRNRTVLTLGLAYFLLKPARYAILLWGPVIVFEQMPSVGKVGAAIIPTAFELAGLLGPIIIGLASDKLFGARRMPACVISLVLLTVALAAFMAAMHTGSVILVVALLFVMGLTLYGPDSMISGAAAIDFGTAKAGATAAGFVNGCGSVGAVLGGLLPGYFDGVTVFIVFAGCALFSALVLLPHWNSRPASAAQSTDVAPNTSMAIKPLRT
>NZ_CP010359.1|WP_013972053.1|2903793_2904663_+|LysR-family-transcriptional-regulator
MSVSHAQLKAFHAVAVHGSFTRAAEKLFLTQPAVSDQVRKLEERFGVLLFHRNKRSVQLTDLGERLLGISQRLFACEAEAHELLQDSRALHTGSLVLAVDAPVHVLPQIARFCQRYPGIQVKIETGNTDESLARLFSYQADLALLGRDVDDERLHCLPLRRDPMVAFVSHQHPWASRGAISLADLDDTPLVLREPGSVTRQTLEEEMQRAGLRIRPAIQVEGREAAREAVVVGIGVGVVSAAEFGADARVCALPIVDCQRHLTETLVCLSEQRTRRVVATFLQMVEEGL
>NZ_CP010359.1|WP_031324779.1|2904863_2905235_+|DUF2784-domain-containing-protein
MLYRLAADTLVLLHLLFILLVLFGGLLVLRWRPALLLHLPAMAWGLAVECLHLGCPLTTWENRMRSAAGDAGYQGGFVEHYIWPLIYPAGLTPHIQLLLGTFVLLLNLGIYSYVACRWRRPSG
>NZ_CP010359.1|WP_023661943.1|2905224_2906001_-|trans-aconitate-2-methyltransferase
MAWSATQYSLFEDERTRAVRDLLAAVPPRPVRHATDLGCGPGNSTEVLLQRYPDAQVTALDSDPDMIDKARERKRLCIPRVRTVIADIAGWTAPEPQDLILANASLQWVPDHASLYTHLVRQLSEGASLAVQTPDNLDEPAHRQLREIASQGPWAAKFADFQLPPRHNAAFYYDLLSPLCARVDVWRTTYHHPLAGGAEAVVEWFKGSALRPYLGRLEEQEQADFLQMYLQAMQRDYPPATDGKVLLPFPRLFVIATR
>NZ_CP010359.1|WP_013972050.1|2906149_2907559_-|amino-acid-permease
MDATSTTTTAKSGHESKLSASLKSRHLTMMSIAGVIGGALFVGSGSVIHSAGPAAVLAYLAGGILVVLIMRMLGEMATSSPDTGSFSTYADRAIGRWAGFTIGWLYWWYWVILMAWEAYVAGKILHGFFPDVSVNVFVLATTLLLITVNFFNVKHYGEFEFWFALIKVIAIVCFLIVCTAAVLNIWQFGEVRGISHLTAEGFMPNGITTVIGALLGVMFAFLGAEIVTIAASEAKDPAAQIVKATNSVVWRVCLFYVGSIFLIVCLVPWNDPHLGVSGYGAYRRTLELLGVPYAELLMNFVVLTSVSSCLISGHYTASRMLFSLAQRGDAPSFFKITRAGTGVPVYAIMGSCAVAVVCALINFSETLRPKDVLETLMNTTGMIALLVYLVIAFSQLRMRRKLVAEGKEVRLKMWLFPWLTYLVIAFIVAALVTMAFMPDYQILVISTGIAAAIVVAMGVVHQIRTGKQH
>NZ_CP010359.1|WP_015269943.1|2907881_2909306_+|PLP-dependent-aminotransferase-family-protein
MFELHPDSSTPLVNQIIDGLRELIDNQTLKPGAKVPSIRAFAASYSVSTFTVVEAYDRLVAQGLLVSRGNAGFFVNRAAGELLDPHNAEADTSRPTFNSEWYLQQIFEIRQLPFKPGCGWLPNDWMYEDGLRRGLRQVAGSPLELSGYGDPMGLMELRALTAQNLQQELSIVANPAQLMLTHGASQALDLAARTLVRPGDVVLVDDPGYPNLMSILRTQGATLVGVPRTPAGYDLNQLEQLLTHHRPTAFFTQPHLHSPTCSRTPLPQLHRLLQLASQHGFRLVENNLYADMVAEPQPCLASLDHLQQVVYVGSYSKSISPNVRVGYMLANPELMQKLLHLKMRSGLTTSQVMERVVYAAIIDGRWRKHLKRLRQRLAEAHQEVGRHLHRLGFELFIESDEGMYIWTRHPAIPDSAALLDDALEKGIMLGPGQLFMVDAKATGWMRFNVAFSTEPAMWELLEKVLVKHVRRGGV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1305433 : 1314175

uncultured_Caudovirales_phage(75.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003258877.1\|1305433_1306714_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-96	54.4
WP_041505785.1\|1306714_1308106_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_013973281.1\|1308222_1309182_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_023661640.1\|1309274_1310279_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.7e-154	80.1
WP_013973279.1\|1310275_1310611_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	5.7e-43	76.6
WP_013973278.1\|1310607_1310904_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.5e-28	63.6
WP_024087386.1\|1310903_1311263_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.6e-35	63.3
WP_013973276.1\|1311264_1311657_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	9.3e-53	79.1
WP_023661639.1\|1311836_1313216_-	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.6e-27	51.1
WP_003251184.1\|1313503_1314175_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0

DBSCAN-SWA_2

1392765 : 1439374

Bacillus_phage(15.38%)

transposase,integrase,protease

attL 1411624:1411647|attR 1434266:1434289

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041506435.1\|1392765_1394202_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_041505852.1\|1395371_1396619_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	1.0e-97	46.2
WP_156155233.1\|1397064_1397223_+	hypothetical protein	NA	NA	NA	NA
WP_013973222.1\|1397327_1397513_-	hypothetical protein	NA	NA	NA	NA
WP_013973221.1\|1397833_1398034_-	hypothetical protein	NA	NA	NA	NA
WP_023662101.1\|1398154_1398733_-	cysteine hydrolase	NA	NA	NA	NA
WP_023662099.1\|1400576_1401338_+	TSUP family transporter	NA	NA	NA	NA
WP_041505853.1\|1401339_1402764_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	9.4e-18	32.8
WP_023662098.1\|1402901_1404731_-	SLC13 family permease	NA	NA	NA	NA
WP_013973215.1\|1404869_1405253_-	hypothetical protein	NA	NA	NA	NA
WP_003257401.1\|1405327_1405519_-	hypothetical protein	NA	NA	NA	NA
WP_003257402.1\|1405648_1405939_-	RcnB family protein	NA	NA	NA	NA
WP_016498900.1\|1406053_1406404_+	hypothetical protein	NA	NA	NA	NA
WP_013973518.1\|1406737_1407691_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013973212.1\|1407807_1408629_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015270905.1\|1408629_1409397_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.3e-18	31.7
WP_023662816.1\|1409433_1410501_-	phosphotransferase family protein	NA	NA	NA	NA
WP_003257405.1\|1410706_1411024_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_013973208.1\|1411080_1411791_-	histidine phosphatase family protein	NA	NA	NA	NA
1411624:1411647	attL	NA	NA	NA	NA
WP_023662815.1\|1411988_1413008_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	2.6e-22	25.5
WP_013973206.1\|1413334_1414387_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.0e-106	58.3
WP_003251051.1\|1414388_1414634_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_024087378.1\|1414673_1415021_-	hypothetical protein	NA	NA	NA	NA
WP_023662812.1\|1415105_1415306_-	hypothetical protein	NA	NA	NA	NA
WP_023662811.1\|1415599_1415929_-	hypothetical protein	A0A023NGB2	Nitrincola_phage	1.7e-23	51.1
WP_023662810.1\|1416052_1416280_+	hypothetical protein	NA	NA	NA	NA
WP_013973203.1\|1417211_1417661_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_013973202.1\|1417814_1418519_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_023662809.1\|1418617_1419511_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023662808.1\|1419728_1420943_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_013973199.1\|1421260_1421497_-	hypothetical protein	K7PJU3	Enterobacteria_phage	5.1e-14	52.3
WP_013973198.1\|1421662_1422673_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	1.9e-28	26.9
WP_013973197.1\|1423132_1423330_+	hypothetical protein	NA	NA	NA	NA
WP_015270882.1\|1423331_1423745_-	DoxX family protein	NA	NA	NA	NA
WP_031325629.1\|1424137_1424413_+	hypothetical protein	NA	NA	NA	NA
WP_031325628.1\|1424455_1425616_+	PAS domain S-box protein	NA	NA	NA	NA
WP_013973193.1\|1425622_1427068_+	AAA family ATPase	NA	NA	NA	NA
WP_023662806.1\|1427079_1427433_+	response regulator	NA	NA	NA	NA
WP_004375914.1\|1427478_1427676_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	7.5e-11	55.6
WP_013973191.1\|1427929_1428952_-	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	1.7e-37	30.7
WP_038409937.1\|1429009_1430101_-	molybdenum ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-13	27.6
WP_013973189.1\|1430102_1430783_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_023662423.1\|1430782_1431541_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041505854.1\|1431722_1432811_-	nitronate monooxygenase	NA	NA	NA	NA
WP_004375922.1\|1433032_1433335_-	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_024087369.1\|1433495_1433855_+	hypothetical protein	NA	NA	NA	NA
WP_023662562.1\|1433932_1434583_+	cytochrome c4	NA	NA	NA	NA
1434266:1434289	attR	NA	NA	NA	NA
WP_013973182.1\|1434579_1435494_+	c-type cytochrome	NA	NA	NA	NA
WP_013973181.1\|1435796_1436636_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	7.3e-63	46.2
WP_013973180.1\|1436824_1438180_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	2.3e-50	30.3
WP_013970357.1\|1438423_1439374_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2336440 : 2351427

uncultured_Caudovirales_phage(66.67%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023660894.1\|2336440_2337106_+	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	2.9e-94	69.8
WP_041505981.1\|2337776_2338253_+	hypothetical protein	NA	NA	NA	NA
WP_156155240.1\|2338585_2339326_+	hypothetical protein	NA	NA	NA	NA
WP_041505983.1\|2339310_2339976_+	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	1.4e-93	70.7
WP_041505984.1\|2340163_2341213_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	8.7e-21	30.0
WP_080963540.1\|2341332_2341506_-	DUF2514 family protein	NA	NA	NA	NA
WP_082041884.1\|2341465_2341696_-	hypothetical protein	H2BDA1	Pseudomonas_phage	1.2e-20	69.3
WP_156155252.1\|2341899_2342265_-	hypothetical protein	J7HXL1	Pseudomonas_phage	3.9e-21	54.9
WP_082041837.1\|2342258_2342576_-	ammonia monooxygenase	G8GWD9	Rhodobacter_phage	4.2e-27	51.9
WP_041505986.1\|2342572_2343016_-	structural protein P5	A0A2H4J6R1	uncultured_Caudovirales_phage	4.6e-32	52.8
WP_041505987.1\|2343077_2343302_-	hypothetical protein	NA	NA	NA	NA
WP_041505988.1\|2343515_2343896_-	hypothetical protein	NA	NA	NA	NA
WP_082041838.1\|2343892_2350741_-	DUF1983 domain-containing protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	63.4
WP_041505989.1\|2350797_2351427_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	4.3e-68	65.9

DBSCAN-SWA_4

2401115 : 2445468

Pseudomonas_phage(55.26%)

capsid,head,holin,tail,integrase,portal,protease,terminase

attL 2410779:2410794|attR 2443880:2443895

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034032494.1\|2401115_2402315_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_041505994.1\|2402517_2402868_-	hypothetical protein	NA	NA	NA	NA
WP_041505995.1\|2403044_2403230_+	hypothetical protein	NA	NA	NA	NA
WP_156155241.1\|2403226_2403394_-	hypothetical protein	NA	NA	NA	NA
WP_041505997.1\|2403421_2404177_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	1.3e-119	76.5
WP_041505998.1\|2404179_2404929_-\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	1.3e-124	79.5
WP_041505999.1\|2404925_2405264_-\|tail	phage tail protein	A0A1S5R1J0	Pseudomonas_phage	6.7e-15	37.5
WP_041506000.1\|2405263_2408551_-\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	2.5e-74	35.6
WP_041506001.1\|2408829_2409174_-	hypothetical protein	NA	NA	NA	NA
WP_041506002.1\|2409214_2409715_-	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	2.7e-65	73.9
WP_041506003.1\|2409770_2410157_-	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	2.0e-55	83.6
WP_041506004.1\|2410149_2410725_-	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	8.0e-53	56.3
2410779:2410794	attL	NA	NA	NA	NA
WP_081951447.1\|2410913_2411240_-\|head	phage head closure protein	A0A2H4JC00	uncultured_Caudovirales_phage	4.8e-18	45.5
WP_041506005.1\|2411236_2411578_-\|head,tail	phage gp6-like head-tail connector protein	C4ML08	Xanthomonas_virus	4.4e-14	39.1
WP_156155242.1\|2411582_2412113_-	hypothetical protein	NA	NA	NA	NA
WP_041506006.1\|2412161_2413355_-\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	1.4e-144	70.1
WP_041506007.1\|2413351_2414215_-\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	1.5e-95	62.5
WP_041506008.1\|2414218_2415529_-\|portal	phage portal protein	H2BDA8	Pseudomonas_virus	2.0e-179	69.7
WP_041506009.1\|2415679_2417359_-\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	2.3e-193	60.7
WP_041506010.1\|2417362_2417854_-\|terminase	terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	3.1e-21	46.6
WP_041506011.1\|2418011_2418350_-	HNH endonuclease	B5WZZ4	Pseudomonas_phage	4.8e-29	55.1
WP_041506012.1\|2418349_2418673_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	2.3e-28	63.2
WP_041506013.1\|2418752_2419079_-	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_027609633.1\|2419236_2419626_-	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	1.8e-43	64.1
WP_041506014.1\|2419637_2419955_-	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	5.6e-32	63.8
WP_156155243.1\|2419951_2420230_-	hypothetical protein	NA	NA	NA	NA
WP_041506016.1\|2420226_2421528_-\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	2.0e-176	73.0
WP_041506017.1\|2421524_2421953_-	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	4.3e-43	64.3
WP_041506018.1\|2421949_2422246_-	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	3.6e-33	72.0
WP_041506458.1\|2422373_2423153_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	7.5e-62	56.7
WP_041506019.1\|2423139_2424108_-	hypothetical protein	A0A1B0VME0	Pseudomonas_phage	6.0e-109	70.1
WP_052484831.1\|2424109_2424817_-	DNA-binding protein	A0A1B0YZY9	Pseudomonas_phage	3.9e-49	53.0
WP_052484804.1\|2425018_2425243_-	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_041506020.1\|2425347_2426235_+	helix-turn-helix domain-containing protein	H2BD63	Pseudomonas_phage	1.1e-37	44.6
WP_041506021.1\|2426329_2427223_+	hypothetical protein	NA	NA	NA	NA
WP_041506023.1\|2427498_2427900_+	hypothetical protein	NA	NA	NA	NA
WP_041506024.1\|2427955_2428258_-	DUF1654 domain-containing protein	A0A127KNY9	Pseudomonas_phage	7.5e-18	59.3
WP_156155244.1\|2428938_2429130_+	hypothetical protein	NA	NA	NA	NA
WP_041506027.1\|2429800_2430184_+	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	1.6e-25	59.8
WP_041506028.1\|2430198_2430465_+	hypothetical protein	NA	NA	NA	NA
WP_041506029.1\|2430461_2430920_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	1.1e-47	62.5
WP_041506030.1\|2431008_2431356_+	hypothetical protein	I3PUY8	Vibrio_phage	1.4e-23	50.0
WP_041506031.1\|2431382_2432198_+	DUF2303 family protein	A0A0P0ZBZ4	Stx2-converting_phage	2.2e-48	40.7
WP_052484805.1\|2432307_2432766_-	hypothetical protein	NA	NA	NA	NA
WP_041506032.1\|2432879_2433356_+	hypothetical protein	NA	NA	NA	NA
WP_052484832.1\|2433561_2434071_+	hypothetical protein	NA	NA	NA	NA
WP_041506034.1\|2434123_2434477_+	four helix bundle protein	NA	NA	NA	NA
WP_082041843.1\|2434675_2435833_+	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	2.3e-46	35.0
WP_041506036.1\|2435888_2436305_+	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	9.6e-40	62.0
WP_041506037.1\|2436347_2436626_-	hypothetical protein	NA	NA	NA	NA
WP_041506038.1\|2436756_2438541_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.4e-95	34.5
WP_052484806.1\|2438562_2439264_+	hypothetical protein	NA	NA	NA	NA
WP_041506039.1\|2439260_2439485_+	hypothetical protein	NA	NA	NA	NA
WP_041506040.1\|2439573_2440164_+	hypothetical protein	NA	NA	NA	NA
WP_041506041.1\|2440160_2440487_+	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	8.1e-18	48.6
WP_041506042.1\|2440483_2440801_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_041506043.1\|2440797_2441202_+	DUF2591 domain-containing protein	J7I4M3	Pseudomonas_phage	7.0e-11	35.0
WP_041506044.1\|2441189_2441522_+	hypothetical protein	NA	NA	NA	NA
WP_041506045.1\|2441518_2441806_+	hypothetical protein	NA	NA	NA	NA
WP_041506046.1\|2441852_2442071_+	hypothetical protein	A0A0N9ERZ3	Pseudomonas_phage	2.0e-25	68.1
WP_052484807.1\|2442128_2442455_+	hypothetical protein	NA	NA	NA	NA
WP_041506047.1\|2442667_2443846_+\|integrase	site-specific integrase	J7HXC4	Pseudomonas_phage	4.9e-121	57.5
WP_013972511.1\|2443881_2445468_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	2.2e-60	28.3
2443880:2443895	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3022291 : 3082918

Acidithiobacillus_phage(28.57%)

transposase,integrase

attL 3065866:3065881|attR 3089010:3089025

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003299771.1\|3022291_3025285_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	5.7e-259	47.6
WP_003089113.1\|3025297_3025510_-	hypothetical protein	NA	NA	NA	NA
WP_003150552.1\|3025517_3025793_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_003089115.1\|3025805_3026156_-	mercury transporter MerT	NA	NA	NA	NA
WP_003089120.1\|3026230_3026629_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_041506131.1\|3026618_3026981_-	hypothetical protein	NA	NA	NA	NA
WP_041506132.1\|3026998_3027715_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-14	26.0
WP_023048108.1\|3027714_3028473_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	7.4e-14	28.0
WP_023048107.1\|3028469_3029378_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_024075423.1\|3030508_3031960_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_023048105.1\|3032069_3033437_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_041506133.1\|3033675_3034905_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_023628647.1\|3034989_3035967_-	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_023048102.1\|3036159_3036879_+	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_082041849.1\|3037256_3038216_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023662936.1\|3038313_3040404_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_023662937.1\|3040439_3042185_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_052062200.1\|3042485_3043859_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_031637015.1\|3044358_3045531_-	hypothetical protein	NA	NA	NA	NA
WP_041506134.1\|3045684_3047046_-	allantoin permease	NA	NA	NA	NA
WP_023662939.1\|3047692_3048637_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_023048095.1\|3048637_3049402_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_023048094.1\|3049458_3050697_-	CoA transferase	NA	NA	NA	NA
WP_023048093.1\|3050723_3051926_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_023048092.1\|3051935_3053477_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_023628973.1\|3053480_3054266_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_023048090.1\|3054502_3055369_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_023048089.1\|3055430_3056585_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_023048087.1\|3057488_3057686_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_082041850.1\|3057725_3058334_-	hypothetical protein	NA	NA	NA	NA
WP_010953412.1\|3058628_3059222_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_041506135.1\|3059612_3060233_+	glutathione S-transferase	NA	NA	NA	NA
WP_010466266.1\|3061342_3062611_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_019692570.1\|3063834_3064860_+\|transposase	IS110-like element IS1383 family transposase	NA	NA	NA	NA
WP_003118432.1\|3065404_3066232_+	phosphonate ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.4e-07	25.7
3065866:3065881	attL	NA	NA	NA	NA
WP_010562501.1\|3066228_3067092_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010466252.1\|3067100_3067928_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_003127732.1\|3067936_3068947_+	phosphonate dehydrogenase PtxD	NA	NA	NA	NA
WP_003127731.1\|3068940_3069810_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019692570.1\|3070122_3071148_-\|transposase	IS110-like element IS1383 family transposase	NA	NA	NA	NA
WP_041506137.1\|3072684_3074370_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.2e-165	57.8
WP_041506138.1\|3074257_3075007_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.9e-80	59.9
WP_041506139.1\|3075639_3075984_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	6.3e-37	66.4
WP_041506140.1\|3076678_3077155_-	cytochrome P460 family protein	NA	NA	NA	NA
WP_041506141.1\|3077806_3078214_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_041506142.1\|3078210_3080100_-\|integrase	integrase	NA	NA	NA	NA
WP_041506143.1\|3080096_3081773_-	hypothetical protein	NA	NA	NA	NA
WP_041506144.1\|3081772_3082918_-\|integrase	site-specific integrase	NA	NA	NA	NA
3089010:3089025	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3229771 : 3266016

Feldmannia_species_virus(25.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023662544.1\|3229771_3230740_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_031325352.1\|3230736_3233034_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_023662546.1\|3233133_3233910_-	molecular chaperone	NA	NA	NA	NA
WP_013971931.1\|3233949_3234453_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_023662547.1\|3234456_3234987_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_003256412.1\|3235005_3235542_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_024086641.1\|3235572_3236100_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013971928.1\|3236363_3238613_+	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	6.2e-32	21.8
WP_013971927.1\|3238628_3239090_+	response regulator	NA	NA	NA	NA
WP_013971926.1\|3239103_3241491_+	hybrid sensor histidine kinase/response regulator	Q8QNA2	Ectocarpus_siliculosus_virus	4.9e-11	26.9
WP_013971925.1\|3241918_3242161_+	hypothetical protein	NA	NA	NA	NA
WP_003256418.1\|3242162_3242588_-	DUF1810 domain-containing protein	A0A2H4UVK5	Bodo_saltans_virus	1.3e-10	37.6
WP_031324969.1\|3242746_3243817_+	cell division protein ZapE	NA	NA	NA	NA
WP_041506156.1\|3243925_3245815_-	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	3.3e-55	29.9
WP_023663489.1\|3245995_3246862_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041506157.1\|3246835_3247990_-	HPP family protein	NA	NA	NA	NA
WP_013971920.1\|3248331_3249651_-	sensor histidine kinase	NA	NA	NA	NA
WP_013971919.1\|3249647_3250316_-	response regulator transcription factor	NA	NA	NA	NA
WP_013971918.1\|3250316_3250631_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_003256549.1\|3250630_3250942_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_041506158.1\|3251221_3252301_+	hypothetical protein	NA	NA	NA	NA
WP_003256551.1\|3252354_3252711_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_013971916.1\|3252841_3253357_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_023661205.1\|3253727_3256337_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_013971914.1\|3256513_3257998_-	2-methylcitrate dehydratase	NA	NA	NA	NA
WP_013971913.1\|3258152_3259343_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_015269715.1\|3259476_3262065_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_013971911.1\|3262234_3263362_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_003259689.1\|3263546_3264437_-	methylisocitrate lyase	NA	NA	NA	NA
WP_013971909.1\|3264433_3265150_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_023662146.1\|3265479_3266016_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

DBSCAN-SWA_7

4210673 : 4218452

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012270662.1\|4210673_4211483_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.5e-25	32.5
WP_041506244.1\|4211731_4212706_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	8.0e-37	32.8
WP_013971081.1\|4212718_4213243_+	HAD family hydrolase	A0A140XBD6	Dickeya_phage	1.2e-26	47.4
WP_013971080.1\|4213251_4213824_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_023660773.1\|4213810_4214335_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_003257916.1\|4214335_4215061_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.9e-23	27.0
WP_023660774.1\|4215236_4216730_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_003255135.1\|4216809_4217118_+	ribosome hibernation promoting factor	A0A0M7QH33	Escherichia_phage	4.4e-05	34.1
WP_015269060.1\|4217130_4217595_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_013971076.1\|4217597_4218452_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	6.2e-09	32.8

DBSCAN-SWA_8

4951732 : 5016948

Bacillus_virus(22.22%)

bacteriocin,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013970502.1\|4951732_4952677_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_023662282.1\|4952800_4953685_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_013970500.1\|4953703_4954669_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_013970499.1\|4954679_4955156_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_003257487.1\|4955576_4955834_+	hypothetical protein	NA	NA	NA	NA
WP_015268639.1\|4955953_4957060_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_023661916.1\|4957516_4958893_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_003257486.1\|4959346_4960294_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013970496.1\|4960378_4961224_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_003257485.1\|4961220_4962399_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-24	36.2
WP_013970495.1\|4962519_4963290_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_003257484.1\|4963300_4964038_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_003257483.1\|4964065_4964326_-	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_013970493.1\|4964326_4964965_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_003255736.1\|4964965_4965559_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_013970492.1\|4965797_4967459_-	OFA family MFS transporter	NA	NA	NA	NA
WP_023661917.1\|4967764_4970011_+	AsmA family protein	NA	NA	NA	NA
WP_013970490.1\|4970007_4971075_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_003257478.1\|4971071_4971344_+	oxidative damage protection protein	NA	NA	NA	NA
WP_013970489.1\|4971717_4972698_+	polyphosphate kinase 2	NA	NA	NA	NA
WP_013970488.1\|4972755_4973199_+	hypothetical protein	NA	NA	NA	NA
WP_013970487.1\|4973380_4974766_-	GABA permease	NA	NA	NA	NA
WP_003257472.1\|4975431_4976205_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-21	32.0
WP_013970486.1\|4976216_4976969_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013970485.1\|4977023_4977716_+	ABC transporter permease	NA	NA	NA	NA
WP_023661919.1\|4977715_4978405_+	ABC transporter permease	NA	NA	NA	NA
WP_041506499.1\|4978529_4979735_+	methyltransferase	NA	NA	NA	NA
WP_003257466.1\|4980010_4980301_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_003257464.1\|4980875_4981124_+	hypothetical protein	NA	NA	NA	NA
WP_013970481.1\|4981450_4981657_+	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_023661061.1\|4982132_4984430_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_023661060.1\|4984570_4985290_+	response regulator	W8CYM9	Bacillus_phage	1.1e-30	34.1
WP_013970476.1\|4985291_4986680_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_041506300.1\|4986795_4988463_+	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_013970474.1\|4988580_4989900_-	OprD family porin	NA	NA	NA	NA
WP_023661826.1\|4990405_4992484_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_041479960.1\|4993042_4994335_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-28	30.4
WP_023661825.1\|4994834_4995941_-	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	1.3e-102	50.3
WP_041506301.1\|4996220_4996766_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.3e-49	53.4
WP_024087997.1\|4996808_4998623_+	sensor histidine kinase	NA	NA	NA	NA
WP_041506302.1\|4998619_5000026_+	sigma-54-dependent Fis family transcriptional regulator	W8CYM9	Bacillus_phage	3.0e-08	28.7
WP_023662600.1\|5000025_5000481_+	thioesterase	NA	NA	NA	NA
WP_041506303.1\|5000652_5001471_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_013970466.1\|5001467_5002034_-	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_003257447.1\|5002098_5002761_+	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_023661080.1\|5002872_5003313_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_013970464.1\|5003498_5004329_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_023661081.1\|5004334_5006680_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_041506304.1\|5006998_5007481_+	surface antigen	NA	NA	NA	NA
WP_023662788.1\|5007536_5007977_-	thioesterase	NA	NA	NA	NA
WP_013970460.1\|5008209_5009751_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	6.6e-126	46.9
WP_013970459.1\|5009930_5010830_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_023662013.1\|5010951_5011746_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_013970457.1\|5011875_5012277_-	RNA-binding protein S4	NA	NA	NA	NA
WP_003257436.1\|5012386_5012869_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_013970455.1\|5012865_5013771_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.1e-39	34.0
WP_013974684.1\|5013834_5014398_+	thiol-disulfide isomerase	NA	NA	NA	NA
WP_023662888.1\|5014483_5016676_+	hypothetical protein	NA	NA	NA	NA
WP_023662887.1\|5016672_5016948_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_9

5249762 : 5258501

uncultured_Caudovirales_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023660508.1\|5249762_5250962_+	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	6.0e-34	31.0
WP_128637022.1\|5251002_5251668_-	hypothetical protein	NA	NA	NA	NA
WP_023660510.1\|5252066_5253365_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_023660511.1\|5253452_5254001_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	7.2e-59	65.5
WP_023660512.1\|5253993_5255076_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	5.7e-108	66.4
WP_023660513.1\|5255101_5255605_-	protein phosphatase	NA	NA	NA	NA
WP_023048559.1\|5255609_5256323_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.8e-118	89.5
WP_031324193.1\|5256346_5256817_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.6e-67	82.7
WP_023660516.1\|5256831_5258115_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	5.7e-200	85.0
WP_023660517.1\|5258144_5258501_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	4.1e-39	65.8

DBSCAN-SWA_10

5275199 : 5304876

uncultured_Caudovirales_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019692570.1\|5275199_5276225_-\|transposase	IS110-like element IS1383 family transposase	NA	NA	NA	NA
WP_033041454.1\|5276416_5277394_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	6.3e-98	58.9
WP_019692570.1\|5277665_5278691_+\|transposase	IS110-like element IS1383 family transposase	NA	NA	NA	NA
WP_023660534.1\|5279612_5280956_-\|transposase	transposase	NA	NA	NA	NA
WP_031324203.1\|5280958_5281903_-	hypothetical protein	NA	NA	NA	NA
WP_096010408.1\|5282828_5283979_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.2e-101	66.3
WP_023660537.1\|5284470_5284863_+	hypothetical protein	NA	NA	NA	NA
WP_023660538.1\|5284899_5286159_-	abortive infection family protein	NA	NA	NA	NA
WP_023660539.1\|5286330_5287476_-	hypothetical protein	NA	NA	NA	NA
WP_012316909.1\|5288600_5289971_-	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	7.4e-28	57.1
WP_012316910.1\|5289963_5290905_-	chromate resistance protein	NA	NA	NA	NA
WP_012316911.1\|5291095_5292400_+	MFS transporter	NA	NA	NA	NA
WP_012316912.1\|5292440_5292614_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_012316913.1\|5292683_5293625_-	CDF family Co(II)/Ni(II) efflux transporter DmeF	NA	NA	NA	NA
WP_012316914.1\|5293621_5293897_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_012316915.1\|5294264_5294921_-	hypothetical protein	NA	NA	NA	NA
WP_012316916.1\|5294932_5295670_-	HupE/UreJ family protein	NA	NA	NA	NA
WP_012316917.1\|5296182_5296491_+	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_012316918.1\|5296495_5296936_+	DedA family protein	NA	NA	NA	NA
WP_012316919.1\|5296932_5297664_+	TraX family protein	NA	NA	NA	NA
WP_016489890.1\|5297736_5297868_-	YHYH domain-containing protein	NA	NA	NA	NA
WP_009684101.1\|5300330_5301818_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.4e-266	98.4
WP_012316922.1\|5301829_5302681_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.9e-143	92.9
WP_009684099.1\|5302773_5303307_+	NUDIX domain-containing protein	A0A2H4J8B3	uncultured_Caudovirales_phage	2.4e-67	96.2
WP_009684098.1\|5303340_5304876_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.6e-116	45.9

DBSCAN-SWA_11

6107476 : 6149114

Pseudomonas_phage(52.63%)

capsid,head,holin,tail,integrase,portal,protease,terminase

attL 6100748:6100779|attR 6158571:6158602

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6100748:6100779	attL	NA	NA	NA	NA
WP_013974309.1\|6107476_6108340_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.4e-05	47.3
WP_041506373.1\|6108611_6110150_+	MFS transporter	NA	NA	NA	NA
WP_041506374.1\|6110464_6110974_-	hypothetical protein	NA	NA	NA	NA
WP_041506375.1\|6110978_6112172_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.7e-177	79.9
WP_052484824.1\|6112867_6113257_-	carbon storage regulator CsrA	A0A0U1UNS3	Pseudomonas_phage	1.8e-08	56.6
WP_041506376.1\|6113347_6113743_-	LuxR family transcriptional regulator	A0A0A0YWH0	Pseudomonas_phage	4.4e-34	69.2
WP_041506511.1\|6113882_6114647_-	LexA family transcriptional regulator	A0A0U1SXS9	Pseudomonas_phage	1.5e-38	42.2
WP_041506377.1\|6114752_6115049_+	Cro/Cl family transcriptional regulator	A0A0U1UNM4	Pseudomonas_phage	1.9e-13	59.1
WP_041506378.1\|6115045_6115582_+	DNA-binding protein	A0A0H5ARR4	Pseudomonas_phage	2.1e-39	47.7
WP_041506379.1\|6115981_6116311_+	hypothetical protein	NA	NA	NA	NA
WP_041506380.1\|6116828_6117137_+	hypothetical protein	NA	NA	NA	NA
WP_041506381.1\|6117133_6117877_+	hypothetical protein	A0A191ZDI8	Acinetobacter_phage	2.2e-18	52.5
WP_052484825.1\|6117873_6118479_+	hypothetical protein	NA	NA	NA	NA
WP_041506382.1\|6118475_6118706_+	hypothetical protein	A0A1W6JTF8	Pseudomonas_phage	2.4e-16	52.6
WP_041506383.1\|6118702_6119503_+	hypothetical protein	A0A2H4J0Z7	uncultured_Caudovirales_phage	2.6e-17	57.4
WP_041506384.1\|6119499_6120279_+	AAA family ATPase	A0A0A0YRV1	Pseudomonas_phage	5.8e-70	52.3
WP_041506385.1\|6120275_6121685_+	replicative DNA helicase	A0A1W6JTB3	Pseudomonas_phage	1.1e-119	50.2
WP_041506386.1\|6121671_6122184_+	hypothetical protein	NA	NA	NA	NA
WP_041506387.1\|6122180_6122468_+	hypothetical protein	NA	NA	NA	NA
WP_041506388.1\|6122464_6122854_+	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	1.1e-37	58.6
WP_052484826.1\|6122982_6123234_+	hypothetical protein	NA	NA	NA	NA
WP_041506389.1\|6123401_6123911_+	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.2e-84	92.9
WP_143133026.1\|6124158_6124554_+	hypothetical protein	NA	NA	NA	NA
WP_029886755.1\|6124741_6125116_+	hypothetical protein	A0A2H4J7X6	uncultured_Caudovirales_phage	1.7e-64	99.2
WP_041506391.1\|6125116_6125398_+\|holin	phage holin family protein	A0A2H4J0H1	uncultured_Caudovirales_phage	7.4e-44	96.8
WP_143133028.1\|6125399_6125825_-	hypothetical protein	NA	NA	NA	NA
WP_041506393.1\|6125928_6126111_+	hypothetical protein	NA	NA	NA	NA
WP_041506394.1\|6126101_6126470_+	HNH endonuclease	Q6JIE9	Burkholderia_virus	6.3e-19	45.3
WP_019438292.1\|6126597_6126981_+	hypothetical protein	Q9XJT7	Pseudomonas_phage	3.0e-19	44.2
WP_024086706.1\|6126980_6128690_+\|terminase	terminase large subunit	A0A0R6PIM0	Moraxella_phage	3.1e-233	68.6
WP_082041878.1\|6128858_6130193_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	2.4e-132	56.3
WP_041506395.1\|6130189_6130891_+\|head,protease	HK97 family phage prohead protease	Q6JIM8	Burkholderia_virus	1.1e-72	62.8
WP_052484827.1\|6130900_6132157_+\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	2.3e-92	48.8
WP_041506396.1\|6132198_6132423_+	hypothetical protein	NA	NA	NA	NA
WP_041506397.1\|6132426_6132903_+\|head,tail	phage gp6-like head-tail connector protein	G3ENA1	Psychrobacter_phage	7.0e-18	39.6
WP_041506398.1\|6132902_6133244_+\|head	phage head closure protein	B5WZS5	Pseudomonas_phage	6.7e-23	51.3
WP_041506399.1\|6133236_6133722_+	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	6.3e-59	73.9
WP_041506400.1\|6133718_6134087_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	3.0e-37	63.1
WP_041506401.1\|6134137_6134653_+\|tail	phage major tail protein	H2BDC0	Pseudomonas_virus	1.2e-50	60.8
WP_041506402.1\|6134662_6135001_+	hypothetical protein	NA	NA	NA	NA
WP_096009868.1\|6135027_6135285_+	hypothetical protein	Q9MCA3	Pseudomonas_phage	1.4e-12	44.7
WP_041506404.1\|6135346_6135682_+	superinfection immunity protein	E5FIG5	Escherichia_phage	1.3e-07	50.9
WP_041506405.1\|6135735_6138297_+\|tail	phage tail tape measure protein	A0A2H4PI09	Pseudomonas_phage	3.9e-224	59.5
WP_041506406.1\|6138306_6138891_+	hypothetical protein	A0A2H4IYI9	uncultured_Caudovirales_phage	1.6e-53	50.0
WP_096009869.1\|6139196_6139487_+	hypothetical protein	A0A059VA31	Pseudomonas_phage	8.7e-40	78.1
WP_041506408.1\|6139492_6139891_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	6.0e-47	62.9
WP_082041891.1\|6139944_6146208_+	DUF1983 domain-containing protein	A0A2H4J0B1	uncultured_Caudovirales_phage	1.7e-260	57.7
WP_041506409.1\|6146204_6146585_+	hypothetical protein	NA	NA	NA	NA
WP_041506410.1\|6146798_6147023_+	hypothetical protein	NA	NA	NA	NA
WP_041506411.1\|6147083_6147527_+	structural protein P5	A0A2H4J6R1	uncultured_Caudovirales_phage	6.0e-32	52.8
WP_041506412.1\|6147523_6147886_+	hypothetical protein	J7HXL1	Pseudomonas_phage	1.2e-17	52.8
WP_096009870.1\|6147978_6148224_+	hypothetical protein	H2BDA1	Pseudomonas_phage	5.3e-22	69.6
WP_052484829.1\|6148253_6149114_-	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	4.6e-28	32.9
6158571:6158602	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010359

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection