CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007633	Thermotoga sp. RQ7 chromosome, complete genome	7 crisprs	cas14k,DEDDh,cas3HD,cas6,csx1,cas10,cas7,cas5,cas3,cas4,cas1,cas2,WYL,csa3	0	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007633_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007633_1

594480-594906

Orphan

III-A

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CRT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	PILER-CR

6 spacers

The CRISPR arrays of NZ_CP007633_1

>merge|NZ_CP007633|1|594480-594906|CRISPRCasFinder,CRT,PILER-CR
TTTCCTATACCTCTAAGAAAGGATTGAAACTTGACATTGTCAAAAGAACGTGGCACTAAACAACGGTTTCCATACCTCTAAGGAAGTATTGAAACCGTGCACCTTCTTTGAGAAGTTCAGTGGGATCTTTTGTTTCCATACCTCTAAGGAAGTATTGAAACGGAACTGTTAGATGGCTGGGATATGAAGATCAAAAAGTTTCCATACCTCTAAGGAAGTATTGAAACCTTATTTCGGTGGTCGAACGGAAGCGTGGTTCTTAGGGTTTCCATACCTCTAAGGAAGTATTGAAACTTGTTGAATGTTTGATTTATTGCTTCCATTACAGCGTGTTTCCATACCTCTAAGGAAGTATTGAAACGTACAACAGAGGCACTGGTTCACCGTTGAACAAAGCGTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP007633|1|1|594480-594906|CRISPRCasFinder
TTTCCTATACCTCTAAGAAAGGATTGAAAC	TTGACATTGTCAAAAGAACGTGGCACTAAACAACG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CGTGCACCTTCTTTGAGAAGTTCAGTGGGATCTTTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGAACTGTTAGATGGCTGGGATATGAAGATCAAAAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CTTATTTCGGTGGTCGAACGGAAGCGTGGTTCTTAGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTGTTGAATGTTTGATTTATTGCTTCCATTACAGCGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GTACAACAGAGGCACTGGTTCACCGTTGAACAAAGC
GTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP007633|1|1|594480-594906|CRT
TTTCCTATACCTCTAAGAAAGGATTGAAAC	TTGACATTGTCAAAAGAACGTGGCACTAAACAACG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CGTGCACCTTCTTTGAGAAGTTCAGTGGGATCTTTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGAACTGTTAGATGGCTGGGATATGAAGATCAAAAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CTTATTTCGGTGGTCGAACGGAAGCGTGGTTCTTAGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTGTTGAATGTTTGATTTATTGCTTCCATTACAGCGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GTACAACAGAGGCACTGGTTCACCGTTGAACAAAGC
GTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP007633|1|1|594545-594906|PILER-CR
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CGTGCACCTTCTTTGAGAAGTTCAGTGGGATCTTTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GGAACTGTTAGATGGCTGGGATATGAAGATCAAAAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CTTATTTCGGTGGTCGAACGGAAGCGTGGTTCTTAGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTGTTGAATGTTTGATTTATTGCTTCCATTACAGCGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GTACAACAGAGGCACTGGTTCACCGTTGAACAAAGC
GTTTCCATACCTCTAAGGAAGTATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007633.1\|WP_041843982.1\|586406_588359_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|181342
NZ_CP007633.1\|WP_041843989.1\|597972_599103_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|272865
NZ_CP007633.1\|WP_041843993.1\|601874_602891_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|181535
NZ_CP007633.1\|WP_041843980.1\|584352_585363_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP007633.1\|WP_041843990.1\|599099_599861_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|223247
NZ_CP007633.1\|WP_041843994.1\|603143_604391_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|162098
NZ_CP007633.1\|WP_041843987.1\|596112_596550_-\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|376496
NZ_CP007633.1\|WP_041843981.1\|585359_586325_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380315
NZ_CP007633.1\|WP_041843988.1\|596546_598025_-\|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	unknown	unknown	gnl\|CDD\|172457
NZ_CP007633.1\|WP_041843983.1\|588330_588876_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274317
NZ_CP007633.1\|WP_041843986.1\|595530_596154_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|280058
NZ_CP007633.1\|WP_041843991.1\|599857_601120_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP007633.1\|WP_041843992.1\|601116_601878_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|223364
NZ_CP007633.1\|WP_041843984.1\|589000_589501_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380325
NZ_CP007633.1\|WP_038066527.1\|590164_591511_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
NZ_CP007633.1\|WP_015918823.1\|593356_594322_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223318
NZ_CP007633.1\|WP_041843985.1\|589528_590188_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NZ_CP007633.1\|WP_038066529.1\|591556_591892_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP007633.1\|WP_015918822.1\|591916_593248_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
NZ_CP007633.1\|WP_168098974.1\|604412_604580_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007633.1\|WP_041843982.1\|586406_588359_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|181342	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP007633.1\|WP_041843989.1\|597972_599103_-\|chorismate-synthase	gnl\|CDD\|272865	TIGR00033, Chorismate_synthase, chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation. [Amino acid biosynthesis, Aromatic amino acid family].	3.61023e-172
NZ_CP007633.1\|WP_041843993.1\|601874_602891_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|181535	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed.	0
NZ_CP007633.1\|WP_041843980.1\|584352_585363_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.34754e-16
NZ_CP007633.1\|WP_041843990.1\|599099_599861_-\|shikimate-dehydrogenase	gnl\|CDD\|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	3.73759e-82
NZ_CP007633.1\|WP_041843994.1\|603143_604391_-\|MFS-transporter	gnl\|CDD\|162098	TIGR00900, multidrug_transporter, H+ Antiporter protein. [Transport and binding proteins, Cations and iron carrying compounds].	1.48736e-70
NZ_CP007633.1\|WP_041843987.1\|596112_596550_-\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|376496	pfam01220, DHquinase_II, Dehydroquinase class II.	7.86197e-88
NZ_CP007633.1\|WP_041843981.1\|585359_586325_-\|redoxin-domain-containing-protein	gnl\|CDD\|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	1.73096e-80
NZ_CP007633.1\|WP_041843988.1\|596546_598025_-\|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	gnl\|CDD\|172457	PRK13951, PRK13951, bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB.	0
NZ_CP007633.1\|WP_041843983.1\|588330_588876_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274317	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	4.06018e-63
NZ_CP007633.1\|WP_041843986.1\|595530_596154_+\|LysE-family-transporter	gnl\|CDD\|280058	pfam01810, LysE, LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.	4.80642e-28
NZ_CP007633.1\|WP_041843991.1\|599857_601120_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP007633.1\|WP_041843992.1\|601116_601878_-\|prephenate-dehydrogenase	gnl\|CDD\|223364	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism].	9.94038e-61
NZ_CP007633.1\|WP_041843984.1\|589000_589501_-\|nitroreductase-family-protein	gnl\|CDD\|380325	cd02150, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.	3.85184e-94
NZ_CP007633.1\|WP_038066527.1\|590164_591511_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NZ_CP007633.1\|WP_015918823.1\|593356_594322_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|223318	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	1.95713e-151
NZ_CP007633.1\|WP_041843985.1\|589528_590188_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	2.47285e-83
NZ_CP007633.1\|WP_038066529.1\|591556_591892_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	5.82489e-21
NZ_CP007633.1\|WP_015918822.1\|591916_593248_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	3.56844e-79

>NZ_CP007633.1|WP_015918823.1|593356_594322_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MRFFVLGAGSWGTVFAQLLKENGEEVILWARRKEIADLINNSHTSPYIDEMEISVRATNNLDELKSTDILVIAIPVQHVREHLSRLSKKPSMVLNLSKGLEIKTGKRISEIVKEILGCPYAVLSGPSHAEEVARKLPTAVTLAGDNARELQRRISNEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGLGGWDNAKAALETRGIYEIARFGRHFGADQKTFMGLAGIGDLMVTCNSKYSRNRRFGELIAKGFDPQKLLESSHQVVEGAFTVKAVVKKADELEIDMPISEEVYRVIYGGKSPFQSMKDLMKRSLKDEFWAD
>NZ_CP007633.1|WP_015918822.1|591916_593248_-|FAD-dependent-oxidoreductase
MKYDVVIVGGGPAGLVAAFTTKRFYKDKKILVVKKTEKETVPCGIPYIFHTLSGVENDYMGIEERFKSAGIDLLIDEVVDGNTDEKKLLTKTGKEIFYEKLIIATGSTPNVPNIPGVDLEGVFTVPKDANYLKMLYEKIKDSKNVVIIGGGFIGVEVADELKKSGKNVTLVEIMDSLLPVSFDPDFGEIARKEIEAENLKVLTGRKVTEIYGSKRVEGVRLDNAETILADAVILATGYRPNSDLARKLGLKVTEYGFIETDEYMRTSKPDVFAAGDCVQHRDFLTGKPSRLMLASAAVFDARIAASNLYGLKVIRTNKGSLNAYSTVIGSKAFGSVGITERVAKEEGFEIVVGRAEAPDRHPGKFEDTTKLIVKLIFSEDSKILLGAQVCGGKSVGEIVNILSLGMQKGITANDLFTMQIGTHPLLTSAPTVYPLAKAAEMVL
>NZ_CP007633.1|WP_038066529.1|591556_591892_-|carboxymuconolactone-decarboxylase-family-protein
MAAKEKLEQIRKQLQEVIGKAPEIGKFAEYVHAAESPKALDTKTKELISLGIAVAVRCEPCIVWHTEAAVRAGATEEEILDAIKVAVCMGGGPALMYGLKAYEVALEFLGK
>NZ_CP007633.1|WP_038066527.1|590164_591511_-|dihydrolipoyl-dehydrogenase
MYDAVIIGGGPGGYVCAIKLAQLGKRVALVEKEALGGTCTNKGCIPTKAMLTVSHLMSEIKDKSSKYGLKVSGVEFDVSSIMKHVEKSVLMSRKGIEYLMKKNNVDVFIGTGIVENRNTVVVEETGTKLETKNLVLAHGSIPSVFPPFDVEGVWTSDDVFRLKEFPESLLIVGGGVIGVEFATFFSSFGVNVTIVEVANHILPYEDEDVAEEVKKSLKRKGVKILEKAKITSLNKIENGFEATLETGETLRAEKVLLAVGRKPNIPEDVKALGVEIKRGVVTDRKMRTNIEGVYAIGDIRGEIMLAHVAMYEGIVAAKNIAGMEEEMDYSAVPNIIFSSPEVASVGLKEKDVNPEEVVISKFPVSANGRARTMLENIGFVKVVADKNGVVLGMSIVSPSATDMIMEGVIAVKHRMKAEDLEKAIHPHPTLTETILGALEGVSGKPIHL
>NZ_CP007633.1|WP_041843985.1|589528_590188_+|endonuclease-III-domain-containing-protein
MKLEKLHKELRSIHGPVGKWWPGTSEEIMVTAILTQNTNWKNVERAMKNIKEELGKDDILRKLSFLSTERIAHLIRPAGFFNIKAKRLKALLEFLREYNFNLKLLKRMPLGALRELLLKIKGIGKETADAILLYALEKPIFVVDSYTKRLLARIFNIELKDYDEIQKLFMSHYPPNVRLYQELHGLIVEHAKRFCSKNPKCRECPLKKKCFYSQMNGLS
>NZ_CP007633.1|WP_041843984.1|589000_589501_-|nitroreductase-family-protein
MSIVYKRRSIRKYQKKDVPDELVKEVIRAAMHAPSACNQQPWHFVVIRDAETRKKVAEIHPHAKMILEAPVAILVCGDPSLEKCKGFWVQDCSAAVENLLLRAAELGLGAVWCGVYPREDRVKSFQKLLGIPEHVIPFALVPMGYPAEQPTPEDRFKPERIHYEKW
>NZ_CP007633.1|WP_041843983.1|588330_588876_-|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYINRIGTLRDHPDLYGVSVYFQGCDAMPKCHMCHNPETWHLSERFKRDPEDVVKTIDEKLSDLLRYFPKVALVLLGGEPLAPYNREDTLLLSKTFKEKFKDRLVVVLFTWRLPKDIVRENLLEYVQYVDEFVMGRYLHTYRREGFPASRNQLHVNRETFEKMISAVKRREHHGSSLFVRK
>NZ_CP007633.1|WP_041843982.1|586406_588359_-|anaerobic-ribonucleoside-triphosphate-reductase
MVVRYSFESDFEELLKELLSRYGYEMFQMDGLGDQLDVVKFTEDFVRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYKIWQKMKEMYGKSVADEFVESQINGAIYLHDRHHAALMPYCFAYTLKPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMWYFVKKDLEEGIIPEDKLDWYIEQHFQILTYSLNQPIRTTQSPYTNFTYLDRNYIKAIFDGERYPDGSLITDHVEDIIRLQKHYWEWVSKERERQMFTFPVLTASLLYRDGKFLDEDSARFINRVNMKWQDTNWYISDSIDAVASCCRLTSSTQTLKKFSLSSEDEKLKGRMNSIGGSDLNIGSFKVITINLPRIALESNGDRDRFLQILRRRVDLVKKSLASIREIIKERISEGLLPLYENELMLLNRQYGTIGITGVWESATIMGLTTEDVDGLKYTKEGERFVDTVLDLIKEEAEKGYSEYGFTFNIEQVPAEKAAVTLAQKDRFLFGEKQPFTIYSNQWVPLAANTDVLNRIRYSGMWDRKVSGGAILHINLGEPFKTEEESFNMVKMIADMGVMYFAFNTKISVCEHNHAFYGERCPVCGKKKVDEYVRIVGYLVPVSAFNKERREIEYPRRQFYSSTIVRK
>NZ_CP007633.1|WP_041843981.1|585359_586325_-|redoxin-domain-containing-protein
MRVKPFELLTDEGKPFTHVDLYGRYTILFFFPKAGTSGCTREAVEFSRENFEKTQVVGISRDSVESLKRFREKNNLKVVLLSDPEGELHEFFDVLENGKTVRSTFILDRWGFVRREWRKVKVEGHVQEVKEALDQLLKEDLSLNRHIEWRRARRALKKDRIPRDEVETLIKAAHLAPSCMNNQPWRFVVVDSEDVLKRLHEALPGGNYWMKNAPVLIAVHSKKDSDCVLSDNREYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILGIPEDHVLITLIAVGYLGDENELSEKHREIERSERVRKDLSEIVRWNL
>NZ_CP007633.1|WP_041843980.1|584352_585363_+|ABC-transporter-permease
MSEFFSLFSAMWKESWRDRIATFFSVAFPVMFLLIFGFIFGGSGESVKTAVVTVEYDLSDFGDVYSSLEEVEGYYHEVAVVERDRIVFIRNTTDEYYQSLLDSWEMSLKTKVERLFNRLNPVIVVKKKPLETTRQLTAFDYTLTGVIAISLLSIGLFGTVDVFSHYRERGFLKRLRATPVGNFSFVFGLVSARMAYGILSTTIIMVLGVLLFKAKYELNVLLFLLSVVSSVLCFIAFGALISILFKKSEVATQVSVILFTIMMFLSGVYFPISFLPDYLRTVALFLPVKYGVEVIRYSLGFEIFTFTRYLFAVSIMFGAGLVFVFYTSSLILRKED
>NZ_CP007633.1|WP_041843986.1|595530_596154_+|LysE-family-transporter
MLSIFFGSFLVGLSGAMAPGPLMAIAISKSTKDWKASLKLITGHVLLEALLVMLLLVGVRTIPPVLMRAISLAGGIFLLYMGISQLFEAKDPSLISNTGNSRFPLPVQGALVSFSNPYFLLWWFSVGSAFLFRAREHLLSGVLLFYFGHILSDISWYAFLGAAGQFLKRPSWKGVYRIVLVSMSFVLIGFGVYFLLTAFRGDFSHVL
>NZ_CP007633.1|WP_041843987.1|596112_596550_-|type-II-3-dehydroquinate-dehydratase
MKLLVVNGPNLNMLGKRDRNVYGNFTYDDLVRMIEDWAKRNGVEVEVFQSNHEGEIIDRLHQLDFDGLVINPGAFTHYSYAIRDALEIVKVPKVEVHISNIHGREEFRRKSVTAEVCDGQISGLGVYGYILALEYVRKVSSEGGK
>NZ_CP007633.1|WP_041843988.1|596546_598025_-|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB
MRIFLVGMMGSGKSTIGKKVADVLDLDFVDMDDEIEKREKRSIGRIFEEDGEEYFRLKEKELLKELVEKDNIVVSTGGGVVIDPENRNLLKKEKTLFLYAPPEVLIERVTEENRPLLKEGKEKIYEIWEKRKHFYAEFKRIDTSSLNEWETTALVVLEALDEMEVSVLEKPHPVKIVLGGFKRVKNEDLVFTTERVKKIYGRYLPDSSLVFPDGEVVKTLEHVSRAYYELVQMDFPRGKTIAGAGGGALTDFTGFVASTFKRGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNIVGTFRMPDYVIIDPVVTLSMDEGRFEEGVVEAFKMALLSGRGLELFDDPEKIERRNLRILSEMVRLSVEEKAKIVMEDPYDKGLRHALNLGHTLGHVYEMLEGVPHGIAVAWGLEKETMYLYRKGIVPKDTFRWIVEKIKEIVPIPVPAVDREKARTLILNDKKIMKGSRVRLPYVREPGKVEFLEVDPLELLEVVD
>NZ_CP007633.1|WP_041843989.1|597972_599103_-|chorismate-synthase
MKLTIAGDSHGKYMVAILEGLPSGIRVDEELIRRDLFRRRNCYGRGKRMKMEEDAFEIVSGLWKGITTGAPVTILIPNRAGNPVKDVRSVPRPGHIDYAAWVKYKLPDLNIYVERSSARWTVALTAAGSLLKSLLKEFGIEVLGFVTRLGNVEARDIPGDFEELKRRRDESVVFCPDPEATKEMVAEIDRAKEEGNTLGGKVRVIARQVPAGIGSYSELFKKLDSRIGSLFFAIPAVKGVIVGSEEMWNGFDYLDEFEIENGQIKRKTNNLGGIEGGISNGEDIWVNVYVKPIPTTGKPLNSVDLRTMKPEKTPYVRSDVTAVPPASVVCEAALSVVISDALLEHLGEGSIDDLKRRFENEDLPRWDDGFWKEHDR
>NZ_CP007633.1|WP_041843990.1|599099_599861_-|shikimate-dehydrogenase
MKFCIIGYPVKHSISPRLYNEYFKRAKMDHLYVMEEIPPDDFDSEIKRVMEEYDGFNVTIPHKEKVMRYVTPSEDAKKIKAVNCVFRGKGYNTDWTGVVRSLESVEVKEPVVVVGAGGASRAVIYALLYLGVEDIWVTNRTLERAKNLEFPVKIFPFDRLDEMVRGAGSLFNTTSVGMKGEELPVSDDSLKNLSLVYDVIYFDTPLVVKARKLGVKHIIKGNLMFYYQAMENLKIWGIYDEEVFKEVFGEVLK
>NZ_CP007633.1|WP_041843991.1|599857_601120_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKVLPAKKVSGTLSVPPDKSITHRALILSALAESESTLYNLLRCLDTERTHDILGKLGTRFEGDWEKMRVFPKPFSEPIEPLFCGNSGTTTRLMSGVLASYEMFTVLYGDSSLSRRPMRRIIEPLEMMGARFMARQNNFLPMAIKGNHLSGISYKTPVASAQVKSAILLAGLRASGRTIVIEPAKSRDHTERMLKNLGVPVEVEGTRVVLEPATFKGFEMKIPGDISSAAFFIVLGAIHPNARITITGVGLNPTRTGLLEIMKLMGANVEWEVTEENLEPIGNVRVETSSNMKGITVPKDIVPLMIDELPLVGLLGVFAEGETVVRGAEELRKKESDRIKVLVENFRKIGVEIEEFQDGFKITGKQKIRGGEVDPEGDHRMAMLFSIAGLVSEEGVEVKNHECVAVSFPDFYEALEKVIG
>NZ_CP007633.1|WP_041843992.1|601116_601878_-|prephenate-dehydrogenase
MRISVLGAGCIGGSIALKLNEKHRVFAFDQSEDVTKALEERGVRTALRQEDLFDTDLLILALPMAVEERFLKETEFTGKILDVASVKTPFMEIAKERGLNFIGGHPMAGNERKGKAGWDPEMFSGRIFFLCSPDEKKDDVVEGVVRDLGSRPVWIDYREHDRIVAAVSHVQYLISLSARFTGKPYEEYAGPGYQSNTRLSRQNMEMALDMIRYNKENILKYLENTRNFLNTLHNFIEKEDFESLKKIIKEVVA
>NZ_CP007633.1|WP_041843993.1|601874_602891_-|3-deoxy-7-phosphoheptulonate-synthase
MIVVLKPGSTEEDIKKVVKLAESYNLRCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIMAGPCAVEDREMLMEIAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADTYGMYVVTEALGEEELPKVAEYADIIQIGARNAQNFRLLSKAGSYDKPVLLKRGFMNTIEEFLLSAEYIANSGNTRIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPERALSDGKQSLDFKLFEELVREMKGLAEALGVKVN
>NZ_CP007633.1|WP_041843994.1|603143_604391_-|MFS-transporter
MNDITFWKRNFVLLALGRFVSILGSSIQAVAIPLFVLDLTHSGTAVATMSIAYMLPRILLMPIAGIIGDRGNRKFLMVSMDFLRGILICFLSFLAFRNAITLSVLYVSQVAMAVMDNLFDIPTGAMFPDIVPEDFLMRANSIMGMVRIFPQILGPALGGMIYGFYGIAIVFLVNGVSFILSAISEIFIVYRQKIEKKPSHFKQILQDLKEGFLFIWNHSLIRTILIFALFLNLLISPLFMVVYPYTIREVMKFSAQEFGFLETSFTLGALFGNLLIASYLSKRNMWKAMKVSIFLFELPIVFLGVLVMPDFSSSVERLVLFMMFFVTFLIMGFLNPIINVPLDTAFQKMTPSHIRARAFSFLVLVANGVTPLGSVLYGYLVDRVSIHFLYYTVGVLSFLIAVLLLVALRGKELPT
>NZ_CP007633.1|WP_168098974.1|604412_604580_-|hypothetical-protein
MRVYLMISAILVGGLFSLIWLYVLLFPATETVSSSQMVQEPVITETSSAMVTESF

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Crispr_ID: NZ_CP007633_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007633_2

975170-975400

III-A

Consensus_repeat	Method
GTTTCCATACCTCAAAGGAAGTATTGAAACC	PILER-CR
GGTTTCAATACTTCCTTTGAGGTATGGAAAC	CRISPRCasFinder

3 spacers

cas10,csx1,cas6,cas7,cas5,cas3,cas4,cas1,cas2

The CRISPR arrays of NZ_CP007633_2

>merge|NZ_CP007633|2|975170-975400|PILER-CR,CRISPRCasFinder
GGTTTCAATACTTCCTTTGAGGTATGGAAACTTCTATCTCTTTCATGTTCCACCCCTTGAACACAAGGTTTCAATACTTCCTTTGAGGTATGGAAACAAAAAGACTGAAGGGTGATACTGAGATCAACAGGTTGCGTTTCAATACTTCCTTAGAGGTATGGAAATTGAGCCATGAGCCAGGCTTCTCTTTTACAATTAGCAGTTTCAATACATCCTCAGAGGTATGATTTA

>NZ_CP007633|2|2|975170-975334|PILER-CR
GGTTTCAATACTTCCTTTGAGGTATGGAAAC	TTCTATCTCTTTCATGTTCCACCCCTTGAACACAA
GGTTTCAATACTTCCTTTGAGGTATGGAAAC	AAAAAGACTGAAGGGTGATACTGAGATCAACAGGTTG
CGTTTCAATACTTCCTTAGAGGTATGGAAAT

>NZ_CP007633|2|2|975170-975400|CRISPRCasFinder
GGTTTCAATACTTCCTTTGAGGTATGGAAAC	TTCTATCTCTTTCATGTTCCACCCCTTGAACACAA
GGTTTCAATACTTCCTTTGAGGTATGGAAAC	AAAAAGACTGAAGGGTGATACTGAGATCAACAGGTTG
CGTTTCAATACTTCCTTAGAGGTATGGAAAT	TGAGCCATGAGCCAGGCTTCTCTTTTACAATTAGC
AGTTTCAATACATCCTCAGAGGTATGATTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007633.1\|WP_041844146.1\|979360_981700_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP007633.1\|WP_038067041.1\|982230_983211_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP007633.1\|WP_041844143.1\|966925_968878_+\|IGHMBP2-family-helicase	unknown	unknown	gnl\|CDD\|273041
NZ_CP007633.1\|WP_083941415.1\|971485_972886_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP007633.1\|WP_144399089.1\|988115_988583_-\|DUF192-domain-containing-protein	unknown	unknown	gnl\|CDD\|224347
NZ_CP007633.1\|WP_015919204.1\|977562_978579_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP007633.1\|WP_041844145.1\|973734_974205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007633.1\|WP_038066989.1\|963865_964540_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|224790
NZ_CP007633.1\|WP_144399156.1\|976355_977570_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	unknown	unknown	gnl\|CDD\|187796
NZ_CP007633.1\|WP_015919196.1\|969854_971465_+\|CRISPR-associated-DxTHG-motif-protein	csx1	cd09671_csx1_CAS-III	gnl\|CDD\|187802
NZ_CP007633.1\|WP_015919213.1\|987267_988107_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP007633.1\|WP_041844144.1\|969089_969842_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NZ_CP007633.1\|WP_041844142.1\|965891_966929_+\|dipeptide-epimerase	unknown	unknown	gnl\|CDD\|239435
NZ_CP007633.1\|WP_015919208.1\|981702_982221_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP007633.1\|WP_041844141.1\|964572_965889_+\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP007633.1\|WP_144399088.1\|983213_983498_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP007633.1\|WP_015919205.1\|978575_979358_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_CP007633.1\|WP_038067003.1\|972925_973735_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007633.1\|WP_038067033.1\|975483_976212_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP007633.1\|WP_038067006.1\|974195_974537_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|365959

Protein	Function_ID	Function_description	E-value
NZ_CP007633.1\|WP_041844146.1\|979360_981700_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	7.73715e-66
NZ_CP007633.1\|WP_038067041.1\|982230_983211_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.34446e-174
NZ_CP007633.1\|WP_041844143.1\|966925_968878_+\|IGHMBP2-family-helicase	gnl\|CDD\|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP007633.1\|WP_083941415.1\|971485_972886_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.43883e-132
NZ_CP007633.1\|WP_144399089.1\|988115_988583_-\|DUF192-domain-containing-protein	gnl\|CDD\|224347	COG1430, COG1430, Uncharacterized conserved protein [Function unknown].	6.89875e-45
NZ_CP007633.1\|WP_015919204.1\|977562_978579_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.10332e-99
NZ_CP007633.1\|WP_144399156.1\|976355_977570_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	0.000126133
NZ_CP007633.1\|WP_015919196.1\|969854_971465_+\|CRISPR-associated-DxTHG-motif-protein	gnl\|CDD\|187802	cd09671, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	9.78663e-71
NZ_CP007633.1\|WP_015919213.1\|987267_988107_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.8737e-64
NZ_CP007633.1\|WP_041844144.1\|969089_969842_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.6916e-72
NZ_CP007633.1\|WP_041844142.1\|965891_966929_+\|dipeptide-epimerase	gnl\|CDD\|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	1.40839e-120
NZ_CP007633.1\|WP_015919208.1\|981702_982221_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.9859e-52
NZ_CP007633.1\|WP_041844141.1\|964572_965889_+\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.37992e-26
NZ_CP007633.1\|WP_144399088.1\|983213_983498_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.40083e-27
NZ_CP007633.1\|WP_015919205.1\|978575_979358_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.68051e-92
NZ_CP007633.1\|WP_038067006.1\|974195_974537_-\|J-domain-containing-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	5.44802e-24
NZ_CP007633.1\|WP_038067033.1\|975483_976212_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.80581e-30
NZ_CP007633.1\|WP_038066989.1\|963865_964540_-\|cyclase-family-protein	gnl\|CDD\|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	2.5653e-62

>NZ_CP007633.1|WP_038067006.1|974195_974537_-|J-domain-containing-protein
MNPYEVLGVEPGASKEEIERAYRELVKKYHPDRYKDHPLRDLAEEKMKQINEAYQMLMNEEPEKNYSEEDSRFFSYSMGYRNNECRDILACLGCAWCTDTCCEACGGDCIPCM
>NZ_CP007633.1|WP_041844145.1|973734_974205_-|hypothetical-protein
MHVKKISYGGLISALVVLLLYTGNFTKSKIFFAALCSVFVGFLVELFGKGAIPLIAALNLLSFLLVPNPGYVSIFLVLSFYSFVRKKSLLYRLFYLNAGFFFLLIVAIRFFKVELPEVSPILYIPGMLGLQIAFLAYDYLYARILDYLLHIVRERR
>NZ_CP007633.1|WP_038067003.1|972925_973735_-|hypothetical-protein
MFGYIKPLKCELKVREYEEFRRYYCGVCRALKRYSIVPRLLLTYEAASLSLLLSSLKGEHVERKRNFCFFTLKKVEYYQSESINRVAEIFVALLSEKMRDNYLDTKNPIYLLVKSFLKKDPKISKLFDRFYTLERKKANFEELAKEQGRILGKILESTVEEEDQRRILYHLGVHLGEWLYIVDALDDFEKDKKKGVYNPLVEEYRDFERAKNAVKDVLEMCINEIWKAYDLLNLKRNRSILDNIMYLGAPAVTERIFMKQRESSPAGKT
>NZ_CP007633.1|WP_083941415.1|971485_972886_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MNDRKELVVGALIHDVGKVVRRAGDSRAHQLAGYDFTNKVKKFAKFQKYIHYHHEKDLKEKNLEDEKVWYVCFADNLSSSERMTDGNVFDEYRRLENLLSKIPEKEQKKPTYFPIRSADKITEAVTEMEEEKESYASLYESFVEDAEKISLSPDDVNFLVYKYFSFIPQETRVEGDMDISLYDHLKVTAMLSLALYDYAKENHLDFKTYDEMKRYFEDPSVKPFLLVGGDVSGIQNFISSVSSKGALRSYRGRSFFIEILQEVVVDEILSRTGFYRTNVHYIGGGHFHLVLSNTEKVKETIEKIRKELNAWFRKRGLSLHLVMEYTEFSTEDVEDMKSVFESIAKKVNLRKLRMYAEEDLEELFPDDLSSIPEKGGFTCKVCGNRVEKLFALGDSEEEIACDFCRKMYELGRDLLKKDEEENYTYIYLVEKDNGRFEIFNKRFDFSRKPGEDCVVWERTEDLVWGM
>NZ_CP007633.1|WP_015919196.1|969854_971465_+|CRISPR-associated-DxTHG-motif-protein
MHEFVKLVTFLGVGNYRESLVKISPDFCVRQKVFPLAIVDYLHHLGKSVEVLFFLTEESRQSETWLECRNYLENKNVSYKFFSIPERVSSEVVMNSLVRTLVENLKEDENIILDITHSFRSFPLMAGVVALYLKEAKRIDVRVIYGKFDPETNTTECEDLTPLTRATEWIYAVRLFREYGYAKELAHLIRKRNEEIHRKNSSKKPRILNSLSSSLQNISFSLRIGSIKAIRKNLSNFFEFFDGKRNQIRSEVKEFVPEIAALLDVLEKSYRVFHIERGGLKLNEEELESERKLLNFYLQTGDLGMALRLAREYLINAYLMMSGEETNFLERDVRESVNLSKLGYDIILQARNHVARFGFNKVDLPSLNKIEKAIKSLVSSHPERILISSEKSYQSRKAALLTPLGTTKGALYTVLKHFSPDLLLIVTSKQGKEILPEILEKVKYKNDYKVILLEDPFTGVNEINRVISEAREYLADSDEIIVNLTGGTTLLTYLVECIKNHLRYGRKIKTVLAVDRRSYEEQIKNPFVVGEILELE
>NZ_CP007633.1|WP_041844144.1|969089_969842_+|CRISPR-associated-endoribonuclease-Cas6
MRIRIHFQTTEARIPLNYNYFLSSFIYKRLASQNENFARFLHESGYGKRFKFFTFSQLFFENSKVVGDKIVIFPGRGWWHISSPVVDFVRYMFSSLSEDPVIRVGKTEFFVQSITVEEALPVLSEYNFVMISPLVVSVPEEKNGKLVHRYLHPCEEEFYEAFKKNLYKKYRIFYGKDPEGDVEIIPDWNYIKSRERITKRIKLKDVFVRAVVFPFRMRGDRKLVEIGYETGFGEKNSMGFGMVALKENKP
>NZ_CP007633.1|WP_041844143.1|966925_968878_+|IGHMBP2-family-helicase
MTVRQFVKRLIKLVELERNAEISAMLDEIKRLSGEEREKKGRAILGLTGKFVGEELGYFLVRFGRRKEIDTEIGVGDLVLISKGTPLKSDYTGTVVEKGTRFITVAVDRLPPWKLKNVRIDLFASDITFRRQIENLMGLSPEGKKCLEFLLGKREPEESVEEEFVPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEAARGRKLLVTAESNLAVDNLVERLWGSVSLVRIGHPSRVSPHLKESTLAHQIETHDEYTKVKEMKENLSKLIEKRDRFTKPSPQWRRGLSDEKILEYAEKNWSARGVPKERIKEMAEWIKLNNQIQEMRELIEEKEEAIARSIVRKAQVVLSTNSSAALDIVSGILFDVVVVDEASQATIPSILIPISRGKKFVLAGDHKQLPPTILSEEARDLSRTLFEELIRLYPEKSVLLDTQYRMNEILMEFPSREFYDGKLKADDSVKNITLLDLGVEPPNFDKLWDVILSPKNVLVFVDTRNRPDRFERQRKDSPSRENLLEARLVKEIVEKLISMGVKEEWIGVITPYDDQVDLVRTLLEEKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIAIGDSSTLSVHPTYRRFVEFARKKGTYVKI
>NZ_CP007633.1|WP_041844142.1|965891_966929_+|dipeptide-epimerase
MSKIVDVKFTLRRYEYEKPFHITGSISSESRNVEVEITLESGIRGYGEASPSFRVNGERVEALLAVENVVKDMITGFDVRNYARIFEITDKLFAFPSLKAAVQFAVLDALAQELDIQVCHLLGGAKSRIETDKTVGIDSIEKRVEEARKIFEEGFRVIKIKVGENLKEDIEAMMEIAKVTKGAKYIVDANMGYSPKEAVEFVKKIYQAGIDISVYEQPVRREDIDGLRFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVKIAEASGLKLMIGCMGESSLGINQSVHFALGTGAFEYHDLDSHLMLKEEKFRGKFIQEGPEMRVREE
>NZ_CP007633.1|WP_041844141.1|964572_965889_+|transglutaminase-domain-containing-protein
MEFLVYSLPEEIAREEALGNFSTALKLIDEFLKKDLPELQRKRLIYEKERIERLIEDYPFSEKEALEKLKEMFEDFSEEEFHRLLKEGILDYIVVNGERRFERRFFHNLAFAKPEYRERLRKKDEKVEKARKILHDRLERLTKGEKPKEYLVRARVTLRLKKTSSRNRVWLPFPKEGFQIENVKLLKTSHKNFYLAPNNVPQRTIYFEGKDSVYFVEFEYTVREWINRVDPEVAEEPGHFEEFLREEPPHIVFTPKLRWLTREVVGDEENPYLRAKRIYDWITFNVRYSYVKPYALYENITDFVVNNLKGDCGFQALLFITMCRIAGIPARWQSGWYINPIFASPHDWALFYIEPYGWLPADLSFGGARKEREDFRSFYFGNLDGFRMVANDDFMKSFDPEPRYIRQDPTDNQVGEAEGEDGRLPFESTLEVLSFEEV
>NZ_CP007633.1|WP_038066989.1|963865_964540_-|cyclase-family-protein
MFIELSYPIEEKMMTYPDNPPTRFEVVDRIEQGDIANTTMIHHFSHTGTHVDAPYHFCKDGWTLDEIPLEYFIFDHPVIVNREKAPMELFTLEDLKGVDLTGADLLMFRSGFSRFRIEDPATYRFLFPGISPELARFLREEVPSLRAIMLDFLSADPIVSGAKEGYPAHRWLLSKKFSRKRPIIIFEDVNLEPIVERKIKRVIALPVRFKGLDGGPVSVLAEVE
>NZ_CP007633.1|WP_038067033.1|975483_976212_+|CRISPR-associated-endoribonuclease-Cas6
MRIFVKIQPESGSEGKFPADYRRIFMSLLKQVYKRTPFEEIVNSHDRIPKPYVFSVGFNKIKDISGDSIIFESPIFFNFSSSIPQMVGYLYNYIVSQDSIMNGLKVAGVDLPVPKIITSKTVTFKIMGSAVLTRAEKDRYYVLPEDNDFEEALNHSIQVRLNLSRELFETFGVRIPNFKPVKVVNKNLRKVPAKHYGGYIEAFSGTITLDGDPDVLSFLHENGLGVRTGQGFGMLKVVREWH
>NZ_CP007633.1|WP_144399156.1|976355_977570_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MLDELYLIDNFDNLSLPRLFVFILEETARIEGDIRKAYNYFKGNVGYYENYVAQVKEKQFMENLSKIVHYIFRKPSLEGTDRCFFCGNSLKTDEDRSILQRKQFSRILFKDFSSSEGKFPNSFWNMSNEFYLCDVCSQMALFRHFVFPKSGESIFVNVPSFKAIWYLNEAIKAYRDLSLELSVSRAISEVHLKLQRLLGIWERQNVEVIYYNSKSYRIYYMPQRVINLLLNTRISSILNSLNSIKIFEAVIYQERLNEILECEYLLLKYLFDVSSSGRSHLAENVKQYVGDVKRNAGYYMNTLPDLFQEVRSVMGVKQMVPVWRMRELGKEASQLFERTRYRLLELIRLAKKDEVYHLILKTYMANNKPFPEDLNRVFSAKDEDFKNLMFAYVSGMISGGEENE
>NZ_CP007633.1|WP_015919204.1|977562_978579_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSNPKAITATIVFESSAVNRDENIANNIQSLKKLRREDGVYTFFSRASMRHHVFNALVRKHGWKPARVAKDGDVIQFDVLEESILTSEELDFFGYMRTFESASLSRKAPVGMTKAVSLEKWEGDMAFYANHDLVQRAREIGESADPNPFSKEEHLSLYKYSVVVDLENIGKEKVIINEKQCEKLNRLFGIDLKELKEKESIANDKGTISLESVGEKSYRILVTLNDPEKQKRLKQFFDIIINGFEIHSSTESWCVSPVFIVIATTRLPVTLFNPYIKLDDGKIDVDLVAKIAEENTNVIDYRIWGVPFILKGEVDKLCKGPKDLNDWVTGVIGGKENS
>NZ_CP007633.1|WP_015919205.1|978575_979358_+|type-I-B-CRISPR-associated-protein-Cas5
MKLLRIEIKASTGHFAIPFLIFERKTFPIPMYSTMIGFVCNILADEAKISRFLSSNFSMAVVGDHDGVVEEYTWFRNLSKESHTKKFICSFNREANNEIEHPGGQSPVKIQTLINPKINLFLKAEEWILEMVKESFENPQCISRPHLGRSEDVVDDIKVELIDCEKKQVFDTNGYTWMPSPEFVDDVSDSYEELYKRISGSVYRVSSVYIIQNNRRIFEFVHAKLHRGAIPMVGFKVPEVLSWNGTPIFLARIRFPDKGG
>NZ_CP007633.1|WP_041844146.1|979360_981700_+|CRISPR-associated-helicase/endonuclease-Cas3
MPILAKSNGISLREHVEDVLKVLNNFSIEPDLKEFLRKAVFYHDLGKVSYEFQKKVGGNVPEDGIPEVPHSFLSIAFVPENTLEEMGEDLSKVFLSAILYHHWRETYLDYLFGSKQGNVREAFKRLLEVGNNLIRMIKEEMKDFLEYDVELNRSLCEYLSQNSILDSGLILPPHLISLLPSIVLKELNLKDDVYRCYILTLGTLMRADRFASCAEGVGKKDLLERADIEFKEDTFEVIESDLKRRYEKVWQSDVVKEIRGKNVVLVAPTGAGKTEFALMWSKGKTVFTLPLQSATNMMYERVKKYFGEENVGLLHSDAAIHLFLTSLYRKDFEDREGEILEIAEQSRFFSYPFVVATGDQVFPATLKYPGYEMIYSVMANSFLVIDEIQAYSPEAAAIIVKTVEDVNTLGGKFLIMTATLPGFIKDEIIKRTDLDEGVKDVYDSIPQGRLRRNVLKFKDSSDPTEEAVKLYEEGWKVLVVRNTVKKAIETYQKLAEKIGKERVLLVHSRMTLEDRKEVERILENYRPGMNGESIVLVSTQVVEASMDIDFDILLTDVAPADSLVQRMGRIFRKREWTENNPNTFIYIGKSKKEFDSLIKGVYSKDIVENTLKALSEVILGLGEEKIDVLFKNLPKQQPFSLNESQKRTWVEKTYEKLELEKGYMERFRKTLDVLDSGYSSEKKHEAHRIFRRISSMSIVPENLKEDLVEELKGASNYFEFKQITSRYLVDVPLYDMDGSLLEPLEVEAQDEKVLRWTSSLYVLKGSKYEKGIGIFLKEK
>NZ_CP007633.1|WP_015919208.1|981702_982221_+|CRISPR-associated-protein-Cas4
MEELDILNISGTMVSYYFTCKRKLWLFAKNIDMEQSQPTTDLIIGKLLNFKSFKQEKHKEIEIEDCVIDFITFRGEIIIHETKKSRKFEEAHVWQTKYYMFVLRKYGLDITHGVIHYPKLMRKEEINFEKDDEEKIRNALLEIKRITHEKIPPPVLNKSFCKRCSYYELCYV
>NZ_CP007633.1|WP_038067041.1|982230_983211_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGKNYYVFSSGRVKRHENTILIEYQKAGMQQRKFIPVENIDQIFFLGEVDLNSKFLDFAAKNNIVLHFFNYYGYYTGSFYPREKFISGELLVRQVEHYLDSEKRLTLARKFVEGAVHNFKRNIEKRGFDITDKISEYLERTKYAKTIPELMSCEAHARKLYYSTWEEITGWPFEERSMQPPLNELNALISFGNSLTYSIVLKELYFTHLNPTISYLHEPGTKRFSLALDIAEIFKPIFVDRIIFKLINLKKIDREKHFLQEARGVFLNEEGRRLFIEEFENMLQQTILHRKLKRKIKYQSLIRLEAYKIIKHLLGEDEYRPLKVWW
>NZ_CP007633.1|WP_144399088.1|983213_983498_+|CRISPR-associated-endonuclease-Cas2
MVKVILVYDISTETKEGVKRLNKVRKIARRYLDHIQKSVFEGELTEGEVEKLKFELSCVIDKNEDFVIIYKMPPSIMMERDFLTNTEDPSSNFI
>NZ_CP007633.1|WP_015919213.1|987267_988107_+|GGDEF-domain-containing-protein
MKNGRFEFLKRVLGSIQSIRGFVLFESVGGELSVKTSVGKVPLFFKEGFSFTTDEIFELLKFQCDTAVVSVMKDREWSKMLVLFLEKPLEKETLSLIQSLMSVSECEDLFFDMKELEYMAYHDPLTGLPNRRYFFELGGKYLDIAKREDKKVFILFLDLSGFKKINDTYGHPFGDEVLKTVSKRILDRIRKSDVISRFGGDEFTLLLYDMKEDYLDSFLKRLFSAFKMPVKIGNTEISVSANVGVARFPEDGTNLEELLKMADSRMYEAKKMKIPYVFV
>NZ_CP007633.1|WP_144399089.1|988115_988583_-|DUF192-domain-containing-protein
MNLRRLLLLALIAAGISVIIVVSNRENRVKFPEGEIVITDGERSLKLRVEIANTPFFRSIGLMYRKSIPDDFGMLFVFEEDTRSGFWMKNTYVPLEIAFIDRNGIVFSIQEMEPCEKEPCKVYYAPKPFRYALEVKRGFFERHGFGVGSRVLIEK

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Crispr_ID: NZ_CP007633_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007633_3

983576-986934

Consensus_repeat	Method
GTTTTTATCTTCCTAAGAGGAATATGAAC	PILER-CR
GTTTTTATCTTCCTAAGAGGAATATGAAC	CRISPRCasFinder
GTTTTTATCTTCCTAAGAGGAATATGAAC	CRT

51 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas6

The CRISPR arrays of NZ_CP007633_3

>merge|NZ_CP007633|3|983576-986934|PILER-CR,CRISPRCasFinder,CRT
GTTTTTATCTTCCTAAGAGGAATATGAACAACCTGCTCTTTAGAGATGCCGACAGCATCAGCAATGTTTTTATCTTCCTAAGAGGAATATGAACTGCTTCGTACAGTTCATCGTAGCTCTTGAACGACCTTGTTTTTATCTTCCTAAGAGGAATATGAACGAGGGCGTTCGACGATGTGAGCAGTGCCCTCTCGAAGTTTTTATCTTCCTAAGAGGAATATGAACTAGACCTGTTCGACAAGTACGTGGCGTTCCCTGAGGAGTTTTTATCTTCCTAAGAGGAATATGAACCAGACAAGGCAAAGTACTTTGCAGGAGAGGCGTTCAGGTTTTTATCTTCCTAAGAGGAATATGAACCCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCCGTTTTTATCTTCCTAAGAGGAATATGAACCCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCCGTTTTTATCTTCCTAAGAGGAATATGAACCGGGACTGGGACGAGTCCCAGAAACTGCCCACGCCGTGTTTTTATCTTCCTAAGAGGAATATGAACTTCATCCTTAATCCTCATTAACTCCTCCCTGAATTCGTTTTTATCTTCCTAAGAGGAATATGAACCCCTTAAATTCGCCAGGCAGAGCAAGTATAAAATAAGTTTTTATCTTCCTAAGAGGAATATGAACGTTTGTGATTAAAATTGAAACAAGCGGCGTCTACATGTTTTTATCTTCCTAAGAGGAATATGAACGCCTAGAACACACCGTTTTTTCGCCAACGCCCCCCAGTTTTTATCTTCCTAAGAGGAATATGAACGCCGACAGAAGGCGTCGTTTTCAAACTGCGACACAAGTTTTTATCTTCCTAAGAGGAATATGAACTGTACTTGGGATCAACGCCGTAGCGTGGATCCCTGAGTTTTTATCTTCCTAAGAGGAATATGAACATAGATTTAAACGTGTAATCGATCACGCCTTTTAACGTTTTTATCTTCCTAAGAGGAATATGAACTCTTCTGTGAACGTCACAAATGCATCCCCGACACTAGGTTTTTATCTTCCTAAGAGGAATATGAACGCCCTAGTTCGTGAGCTTCTTTCTTTGCCTCTTTGATTGTTTTTATCTTCCTAAGAGGAATATGAACCACGGTCCCAAACCTGATCTCGACGAGATCTACGAGTTTTTATCTTCCTAAGAGGAATATGAACACTAACATACTCTCGCCTCCTCTAATTCGTTCTTTTCCGTTTTTATCTTCCTAAGAGGAATATGAACTCGATAACATAATTCATTCCTTTGTTTTCAATCCTCGTTTTTATCTTCCTAAGAGGAATATGAACTACAATTTCATCTTAAATCCCTCCTTCCATCTTTATGTTTTTATCTTCCTAAGAGGAATATGAACGTGATCAAGATGCAGCAAGACACCACACAGTTTGTAGTTTTTATCTTCCTAAGAGGAATATGAACGCGCACAATTGCAGGCAGTTTAGACAGCAGAGGCGCGTTTTTATCTTCCTAAGAGGAATATGAACAAGCGCAAACACGCTGAAAGTGGTGTCGCCTATCTGGTTTTTATCTTCCTAAGAGGAATATGAACCAGTGTTTTATACAACAGAACACCGGTTTGTGATTAGTTTTTATCTTCCTAAGAGGAATATGAACAAATATAAGCTGGTCGTCGTTCGTGAACAGCTGCCACGTTTTTATCTTCCTAAGAGGAATATGAACATCTCGACGAGATCTACGACGCATCAAAATATTACAGTTTTTATCTTCCTAAGAGGAATATGAACCACAATCTCATCCCCTTTCTTCAGACTCAGCAGAATGTTTTTATCTTCCTAAGAGGAATATGAACGGTTCGAGCGTGAAAGGGAACTCAATCCTCATCAAGTTTTTATCTTCCTAAGAGGAATATGAACGCGTCATTGATATCTCCTCCGATGGCGGGAGCTGCGTTTTTATCTTCCTAAGAGGAATATGAACCCTCCTTCAACTCGAGTTCATCACCGTACTTTTCCACGTTTTTATCTTCCTAAGAGGAATATGAACCAAATGCTCTTGGAATCAAAGCTATCGAAGTCGGAGTTTTTATCTTCCTAAGAGGAATATGAACACCAAATCGTCGAGGACATCCTTGTGAACAGGCTCGGGTTTTTATCTTCCTAAGAGGAATATGAACGCACAAATAGTCAACCTGTTCAAAGGGGTGTCTTCAAGTTTTTATCTTCCTAAGAGGAATATGAACTCCTCGTTTAGCGTTGCAAGAGATAGTCCTGTGGGGGTTTTTATCTTCCTAAGAGGAATATGAACCAAAAAGATGACGCTCTCGGCAATATCTTTCCGTGGTTTTTATCTTCCTAAGAGGAATATGAACTGATAAACCATCAGCGGCTCCCTGACCGCCATCCTGGTTTTTATCTTCCTAAGAGGAATATGAACATTTTCTGGGAAATGCAAGAAATTCCAGAAGAACTTGTTTTTATCTTCCTAAGAGGAATATGAACTTCACTGTGGCAGAGATGGCGCAGCAGGACGCAGACGTTTTTATCTTCCTAAGAGGAATATGAACAATGACGGCCGGCACAATCTATGCAATGGCGGCAGCAGGTTTTTATCTTCCTAAGAGGAATATGAACCAGGTTTGTCTGTGCGGTCTTCCGTGTAGAAGAAGAGTTTTTATCTTCCTAAGAGGAATATGAACGCCTGTTTCGAGTGCGGCTTGTGCAAGTGCAAGACGGTTTTTATCTTCCTAAGAGGAATATGAACAGGTGCATATTGAAAATCTATAACAGTATCGTCATAGTTTTTATCTTCCTAAGAGGAATATGAACTCGTATCACCTCAAAAAGGAGGGGGGGGAGGAGCCCCGTTTTTATCTTCCTAAGAGGAATATGAACTCCCTGTATCGTCTGCTCGATAGGGTTGCCTTGTTCGGTTTTTATCTTCCTAAGAGGAATATGAACTGTCTTCTCTCCTATCCGCCTGCCGTTTTTGGGAATGTTTTTATCTTCCTAAGAGGAATATGAACTGCTATCACTTCCTTACCTCTGTATCTCGTACTCGATCGTTTTTATCTTCCTAAGAGGAATATGAACCTTGAGAAGGCTGCTGCACAGGCTGACGCATGGATCGGTTTTTATCTTCCTAAGAGGAATATGAACATGGTCGGGTCATTCCCCTCCTTGTCTCTGAACAACGTTTTTATCTTCCTAAGAGGAATATGAACCAGAACTCCTTCCACCTGTTCACCGCTGCTTTGAACGTTTTTATCTTCCTAAGAGGAATATGAACTGCGGTGTGATAGGTCACACTCCCACCTCACACAACGTTTTTATCTTCCTAAGAGGAATATAGTA

>NZ_CP007633|3|3|983576-986869|PILER-CR
GTTTTTATCTTCCTAAGAGGAATATGAAC	AACCTGCTCTTTAGAGATGCCGACAGCATCAGCAAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCTTCGTACAGTTCATCGTAGCTCTTGAACGACCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAGGGCGTTCGACGATGTGAGCAGTGCCCTCTCGAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TAGACCTGTTCGACAAGTACGTGGCGTTCCCTGAGGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGACAAGGCAAAGTACTTTGCAGGAGAGGCGTTCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CGGGACTGGGACGAGTCCCAGAAACTGCCCACGCCGT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCATCCTTAATCCTCATTAACTCCTCCCTGAATTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCCTTAAATTCGCCAGGCAGAGCAAGTATAAAATAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GTTTGTGATTAAAATTGAAACAAGCGGCGTCTACAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCTAGAACACACCGTTTTTTCGCCAACGCCCCCCA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCGACAGAAGGCGTCGTTTTCAAACTGCGACACAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGTACTTGGGATCAACGCCGTAGCGTGGATCCCTGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATAGATTTAAACGTGTAATCGATCACGCCTTTTAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCTTCTGTGAACGTCACAAATGCATCCCCGACACTAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCCTAGTTCGTGAGCTTCTTTCTTTGCCTCTTTGATT
GTTTTTATCTTCCTAAGAGGAATATGAAC	CACGGTCCCAAACCTGATCTCGACGAGATCTACGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ACTAACATACTCTCGCCTCCTCTAATTCGTTCTTTTCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCGATAACATAATTCATTCCTTTGTTTTCAATCCTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TACAATTTCATCTTAAATCCCTCCTTCCATCTTTAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GTGATCAAGATGCAGCAAGACACCACACAGTTTGTA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCGCACAATTGCAGGCAGTTTAGACAGCAGAGGCGC
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAGCGCAAACACGCTGAAAGTGGTGTCGCCTATCTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGTGTTTTATACAACAGAACACCGGTTTGTGATTA
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAATATAAGCTGGTCGTCGTTCGTGAACAGCTGCCAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATCTCGACGAGATCTACGACGCATCAAAATATTACA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CACAATCTCATCCCCTTTCTTCAGACTCAGCAGAAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GGTTCGAGCGTGAAAGGGAACTCAATCCTCATCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCGTCATTGATATCTCCTCCGATGGCGGGAGCTGC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCTCCTTCAACTCGAGTTCATCACCGTACTTTTCCAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAAATGCTCTTGGAATCAAAGCTATCGAAGTCGGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ACCAAATCGTCGAGGACATCCTTGTGAACAGGCTCGG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCACAAATAGTCAACCTGTTCAAAGGGGTGTCTTCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCCTCGTTTAGCGTTGCAAGAGATAGTCCTGTGGGG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAAAAAGATGACGCTCTCGGCAATATCTTTCCGTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGATAAACCATCAGCGGCTCCCTGACCGCCATCCTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATTTTCTGGGAAATGCAAGAAATTCCAGAAGAACTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCACTGTGGCAGAGATGGCGCAGCAGGACGCAGAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	AATGACGGCCGGCACAATCTATGCAATGGCGGCAGCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGGTTTGTCTGTGCGGTCTTCCGTGTAGAAGAAGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCTGTTTCGAGTGCGGCTTGTGCAAGTGCAAGACG
GTTTTTATCTTCCTAAGAGGAATATGAAC	AGGTGCATATTGAAAATCTATAACAGTATCGTCATA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCGTATCACCTCAAAAAGGAGGGGGGGGAGGAGCCCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCCCTGTATCGTCTGCTCGATAGGGTTGCCTTGTTCG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGTCTTCTCTCCTATCCGCCTGCCGTTTTTGGGAAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCTATCACTTCCTTACCTCTGTATCTCGTACTCGATC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CTTGAGAAGGCTGCTGCACAGGCTGACGCATGGATCG
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATGGTCGGGTCATTCCCCTCCTTGTCTCTGAACAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGAACTCCTTCCACCTGTTCACCGCTGCTTTGAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC

>NZ_CP007633|3|3|983576-986934|CRISPRCasFinder
GTTTTTATCTTCCTAAGAGGAATATGAAC	AACCTGCTCTTTAGAGATGCCGACAGCATCAGCAAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCTTCGTACAGTTCATCGTAGCTCTTGAACGACCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAGGGCGTTCGACGATGTGAGCAGTGCCCTCTCGAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TAGACCTGTTCGACAAGTACGTGGCGTTCCCTGAGGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGACAAGGCAAAGTACTTTGCAGGAGAGGCGTTCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CGGGACTGGGACGAGTCCCAGAAACTGCCCACGCCGT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCATCCTTAATCCTCATTAACTCCTCCCTGAATTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCCTTAAATTCGCCAGGCAGAGCAAGTATAAAATAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GTTTGTGATTAAAATTGAAACAAGCGGCGTCTACAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCTAGAACACACCGTTTTTTCGCCAACGCCCCCCA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCGACAGAAGGCGTCGTTTTCAAACTGCGACACAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGTACTTGGGATCAACGCCGTAGCGTGGATCCCTGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATAGATTTAAACGTGTAATCGATCACGCCTTTTAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCTTCTGTGAACGTCACAAATGCATCCCCGACACTAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCCTAGTTCGTGAGCTTCTTTCTTTGCCTCTTTGATT
GTTTTTATCTTCCTAAGAGGAATATGAAC	CACGGTCCCAAACCTGATCTCGACGAGATCTACGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ACTAACATACTCTCGCCTCCTCTAATTCGTTCTTTTCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCGATAACATAATTCATTCCTTTGTTTTCAATCCTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TACAATTTCATCTTAAATCCCTCCTTCCATCTTTAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GTGATCAAGATGCAGCAAGACACCACACAGTTTGTA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCGCACAATTGCAGGCAGTTTAGACAGCAGAGGCGC
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAGCGCAAACACGCTGAAAGTGGTGTCGCCTATCTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGTGTTTTATACAACAGAACACCGGTTTGTGATTA
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAATATAAGCTGGTCGTCGTTCGTGAACAGCTGCCAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATCTCGACGAGATCTACGACGCATCAAAATATTACA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CACAATCTCATCCCCTTTCTTCAGACTCAGCAGAAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GGTTCGAGCGTGAAAGGGAACTCAATCCTCATCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCGTCATTGATATCTCCTCCGATGGCGGGAGCTGC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCTCCTTCAACTCGAGTTCATCACCGTACTTTTCCAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAAATGCTCTTGGAATCAAAGCTATCGAAGTCGGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ACCAAATCGTCGAGGACATCCTTGTGAACAGGCTCGG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCACAAATAGTCAACCTGTTCAAAGGGGTGTCTTCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCCTCGTTTAGCGTTGCAAGAGATAGTCCTGTGGGG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAAAAAGATGACGCTCTCGGCAATATCTTTCCGTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGATAAACCATCAGCGGCTCCCTGACCGCCATCCTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATTTTCTGGGAAATGCAAGAAATTCCAGAAGAACTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCACTGTGGCAGAGATGGCGCAGCAGGACGCAGAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	AATGACGGCCGGCACAATCTATGCAATGGCGGCAGCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGGTTTGTCTGTGCGGTCTTCCGTGTAGAAGAAGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCTGTTTCGAGTGCGGCTTGTGCAAGTGCAAGACG
GTTTTTATCTTCCTAAGAGGAATATGAAC	AGGTGCATATTGAAAATCTATAACAGTATCGTCATA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCGTATCACCTCAAAAAGGAGGGGGGGGAGGAGCCCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCCCTGTATCGTCTGCTCGATAGGGTTGCCTTGTTCG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGTCTTCTCTCCTATCCGCCTGCCGTTTTTGGGAAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCTATCACTTCCTTACCTCTGTATCTCGTACTCGATC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CTTGAGAAGGCTGCTGCACAGGCTGACGCATGGATCG
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATGGTCGGGTCATTCCCCTCCTTGTCTCTGAACAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGAACTCCTTCCACCTGTTCACCGCTGCTTTGAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCGGTGTGATAGGTCACACTCCCACCTCACACAAC
GTTTTTATCTTCCTAAGAGGAATATAGTA

>NZ_CP007633|3|2|983576-986934|CRT
GTTTTTATCTTCCTAAGAGGAATATGAAC	AACCTGCTCTTTAGAGATGCCGACAGCATCAGCAAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCTTCGTACAGTTCATCGTAGCTCTTGAACGACCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAGGGCGTTCGACGATGTGAGCAGTGCCCTCTCGAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TAGACCTGTTCGACAAGTACGTGGCGTTCCCTGAGGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGACAAGGCAAAGTACTTTGCAGGAGAGGCGTTCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CGGGACTGGGACGAGTCCCAGAAACTGCCCACGCCGT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCATCCTTAATCCTCATTAACTCCTCCCTGAATTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCCTTAAATTCGCCAGGCAGAGCAAGTATAAAATAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GTTTGTGATTAAAATTGAAACAAGCGGCGTCTACAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCTAGAACACACCGTTTTTTCGCCAACGCCCCCCA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCGACAGAAGGCGTCGTTTTCAAACTGCGACACAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGTACTTGGGATCAACGCCGTAGCGTGGATCCCTGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATAGATTTAAACGTGTAATCGATCACGCCTTTTAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCTTCTGTGAACGTCACAAATGCATCCCCGACACTAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCCTAGTTCGTGAGCTTCTTTCTTTGCCTCTTTGATT
GTTTTTATCTTCCTAAGAGGAATATGAAC	CACGGTCCCAAACCTGATCTCGACGAGATCTACGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ACTAACATACTCTCGCCTCCTCTAATTCGTTCTTTTCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCGATAACATAATTCATTCCTTTGTTTTCAATCCTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TACAATTTCATCTTAAATCCCTCCTTCCATCTTTAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GTGATCAAGATGCAGCAAGACACCACACAGTTTGTA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCGCACAATTGCAGGCAGTTTAGACAGCAGAGGCGC
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAGCGCAAACACGCTGAAAGTGGTGTCGCCTATCTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGTGTTTTATACAACAGAACACCGGTTTGTGATTA
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAATATAAGCTGGTCGTCGTTCGTGAACAGCTGCCAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATCTCGACGAGATCTACGACGCATCAAAATATTACA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CACAATCTCATCCCCTTTCTTCAGACTCAGCAGAAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	GGTTCGAGCGTGAAAGGGAACTCAATCCTCATCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCGTCATTGATATCTCCTCCGATGGCGGGAGCTGC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CCTCCTTCAACTCGAGTTCATCACCGTACTTTTCCAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAAATGCTCTTGGAATCAAAGCTATCGAAGTCGGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ACCAAATCGTCGAGGACATCCTTGTGAACAGGCTCGG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCACAAATAGTCAACCTGTTCAAAGGGGTGTCTTCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCCTCGTTTAGCGTTGCAAGAGATAGTCCTGTGGGG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAAAAAGATGACGCTCTCGGCAATATCTTTCCGTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGATAAACCATCAGCGGCTCCCTGACCGCCATCCTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATTTTCTGGGAAATGCAAGAAATTCCAGAAGAACTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCACTGTGGCAGAGATGGCGCAGCAGGACGCAGAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	AATGACGGCCGGCACAATCTATGCAATGGCGGCAGCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGGTTTGTCTGTGCGGTCTTCCGTGTAGAAGAAGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCCTGTTTCGAGTGCGGCTTGTGCAAGTGCAAGACG
GTTTTTATCTTCCTAAGAGGAATATGAAC	AGGTGCATATTGAAAATCTATAACAGTATCGTCATA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCGTATCACCTCAAAAAGGAGGGGGGGGAGGAGCCCC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCCCTGTATCGTCTGCTCGATAGGGTTGCCTTGTTCG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGTCTTCTCTCCTATCCGCCTGCCGTTTTTGGGAAT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCTATCACTTCCTTACCTCTGTATCTCGTACTCGATC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CTTGAGAAGGCTGCTGCACAGGCTGACGCATGGATCG
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATGGTCGGGTCATTCCCCTCCTTGTCTCTGAACAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGAACTCCTTCCACCTGTTCACCGCTGCTTTGAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCGGTGTGATAGGTCACACTCCCACCTCACACAAC
GTTTTTATCTTCCTAAGAGGAATATAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007633.1\|WP_041844146.1\|979360_981700_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP007633.1\|WP_015919215.1\|988600_989935_-\|xylose-isomerase	unknown	unknown	gnl\|CDD\|274238
NZ_CP007633.1\|WP_015919220.1\|993138_993894_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|237566
NZ_CP007633.1\|WP_015919222.1\|994389_995361_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP007633.1\|WP_038067045.1\|990043_991234_+\|M20-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|237578
NZ_CP007633.1\|WP_015919219.1\|992399_993164_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP007633.1\|WP_144399089.1\|988115_988583_-\|DUF192-domain-containing-protein	unknown	unknown	gnl\|CDD\|224347
NZ_CP007633.1\|WP_015919204.1\|977562_978579_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP007633.1\|WP_015919221.1\|993881_994376_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|237761
NZ_CP007633.1\|WP_041844145.1\|973734_974205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007633.1\|WP_015919218.1\|991783_992419_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP007633.1\|WP_015919213.1\|987267_988107_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP007633.1\|WP_038067041.1\|982230_983211_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP007633.1\|WP_015919208.1\|981702_982221_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP007633.1\|WP_144399156.1\|976355_977570_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	unknown	unknown	gnl\|CDD\|187796
NZ_CP007633.1\|WP_144399088.1\|983213_983498_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP007633.1\|WP_015919205.1\|978575_979358_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_CP007633.1\|WP_038067033.1\|975483_976212_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP007633.1\|WP_038067049.1\|991238_991787_+\|ATPase	unknown	unknown	gnl\|CDD\|340391
NZ_CP007633.1\|WP_038067006.1\|974195_974537_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|365959

Protein	Function_ID	Function_description	E-value
NZ_CP007633.1\|WP_041844146.1\|979360_981700_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	7.73715e-66
NZ_CP007633.1\|WP_015919215.1\|988600_989935_-\|xylose-isomerase	gnl\|CDD\|274238	TIGR02630, Xylose_isomerase, xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose. [Energy metabolism, Sugars].	0
NZ_CP007633.1\|WP_015919220.1\|993138_993894_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|237566	PRK13935, PRK13935, stationary phase survival protein SurE; Provisional.	1.02783e-177
NZ_CP007633.1\|WP_015919222.1\|994389_995361_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	9.96168e-22
NZ_CP007633.1\|WP_038067045.1\|990043_991234_+\|M20-family-metallo-hydrolase	gnl\|CDD\|237578	PRK13983, PRK13983, M20 family metallo-hydrolase.	0
NZ_CP007633.1\|WP_144399089.1\|988115_988583_-\|DUF192-domain-containing-protein	gnl\|CDD\|224347	COG1430, COG1430, Uncharacterized conserved protein [Function unknown].	6.89875e-45
NZ_CP007633.1\|WP_015919204.1\|977562_978579_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.10332e-99
NZ_CP007633.1\|WP_015919221.1\|993881_994376_+\|peptide-deformylase	gnl\|CDD\|237761	PRK14597, PRK14597, peptide deformylase; Provisional.	3.70139e-101
NZ_CP007633.1\|WP_015919219.1\|992399_993164_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	2.21568e-88
NZ_CP007633.1\|WP_015919218.1\|991783_992419_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.01504e-79
NZ_CP007633.1\|WP_015919213.1\|987267_988107_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.8737e-64
NZ_CP007633.1\|WP_038067041.1\|982230_983211_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.34446e-174
NZ_CP007633.1\|WP_015919208.1\|981702_982221_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.9859e-52
NZ_CP007633.1\|WP_144399156.1\|976355_977570_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	0.000126133
NZ_CP007633.1\|WP_144399088.1\|983213_983498_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.40083e-27
NZ_CP007633.1\|WP_015919205.1\|978575_979358_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.68051e-92
NZ_CP007633.1\|WP_038067033.1\|975483_976212_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.80581e-30
NZ_CP007633.1\|WP_038067049.1\|991238_991787_+\|ATPase	gnl\|CDD\|340391	cd00075, HATPase, Histidine kinase-like ATPase domain. This superfamily includes the histidine kinase-like ATPase (HATPase) domains of several ATP-binding proteins such as histidine kinase, DNA gyrase B, topoisomerases, heat shock protein 90 (HSP90), phytochrome-like ATPases and DNA mismatch repair proteins. Domains belonging to this superfamily are also referred to as GHKL (gyrase, heat-shock protein 90, histidine kinase, MutL) ATPase domains.	4.53136e-21
NZ_CP007633.1\|WP_038067006.1\|974195_974537_-\|J-domain-containing-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	5.44802e-24

>NZ_CP007633.1|WP_144399088.1|983213_983498_+|CRISPR-associated-endonuclease-Cas2
MVKVILVYDISTETKEGVKRLNKVRKIARRYLDHIQKSVFEGELTEGEVEKLKFELSCVIDKNEDFVIIYKMPPSIMMERDFLTNTEDPSSNFI
>NZ_CP007633.1|WP_038067041.1|982230_983211_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGKNYYVFSSGRVKRHENTILIEYQKAGMQQRKFIPVENIDQIFFLGEVDLNSKFLDFAAKNNIVLHFFNYYGYYTGSFYPREKFISGELLVRQVEHYLDSEKRLTLARKFVEGAVHNFKRNIEKRGFDITDKISEYLERTKYAKTIPELMSCEAHARKLYYSTWEEITGWPFEERSMQPPLNELNALISFGNSLTYSIVLKELYFTHLNPTISYLHEPGTKRFSLALDIAEIFKPIFVDRIIFKLINLKKIDREKHFLQEARGVFLNEEGRRLFIEEFENMLQQTILHRKLKRKIKYQSLIRLEAYKIIKHLLGEDEYRPLKVWW
>NZ_CP007633.1|WP_015919208.1|981702_982221_+|CRISPR-associated-protein-Cas4
MEELDILNISGTMVSYYFTCKRKLWLFAKNIDMEQSQPTTDLIIGKLLNFKSFKQEKHKEIEIEDCVIDFITFRGEIIIHETKKSRKFEEAHVWQTKYYMFVLRKYGLDITHGVIHYPKLMRKEEINFEKDDEEKIRNALLEIKRITHEKIPPPVLNKSFCKRCSYYELCYV
>NZ_CP007633.1|WP_041844146.1|979360_981700_+|CRISPR-associated-helicase/endonuclease-Cas3
MPILAKSNGISLREHVEDVLKVLNNFSIEPDLKEFLRKAVFYHDLGKVSYEFQKKVGGNVPEDGIPEVPHSFLSIAFVPENTLEEMGEDLSKVFLSAILYHHWRETYLDYLFGSKQGNVREAFKRLLEVGNNLIRMIKEEMKDFLEYDVELNRSLCEYLSQNSILDSGLILPPHLISLLPSIVLKELNLKDDVYRCYILTLGTLMRADRFASCAEGVGKKDLLERADIEFKEDTFEVIESDLKRRYEKVWQSDVVKEIRGKNVVLVAPTGAGKTEFALMWSKGKTVFTLPLQSATNMMYERVKKYFGEENVGLLHSDAAIHLFLTSLYRKDFEDREGEILEIAEQSRFFSYPFVVATGDQVFPATLKYPGYEMIYSVMANSFLVIDEIQAYSPEAAAIIVKTVEDVNTLGGKFLIMTATLPGFIKDEIIKRTDLDEGVKDVYDSIPQGRLRRNVLKFKDSSDPTEEAVKLYEEGWKVLVVRNTVKKAIETYQKLAEKIGKERVLLVHSRMTLEDRKEVERILENYRPGMNGESIVLVSTQVVEASMDIDFDILLTDVAPADSLVQRMGRIFRKREWTENNPNTFIYIGKSKKEFDSLIKGVYSKDIVENTLKALSEVILGLGEEKIDVLFKNLPKQQPFSLNESQKRTWVEKTYEKLELEKGYMERFRKTLDVLDSGYSSEKKHEAHRIFRRISSMSIVPENLKEDLVEELKGASNYFEFKQITSRYLVDVPLYDMDGSLLEPLEVEAQDEKVLRWTSSLYVLKGSKYEKGIGIFLKEK
>NZ_CP007633.1|WP_015919205.1|978575_979358_+|type-I-B-CRISPR-associated-protein-Cas5
MKLLRIEIKASTGHFAIPFLIFERKTFPIPMYSTMIGFVCNILADEAKISRFLSSNFSMAVVGDHDGVVEEYTWFRNLSKESHTKKFICSFNREANNEIEHPGGQSPVKIQTLINPKINLFLKAEEWILEMVKESFENPQCISRPHLGRSEDVVDDIKVELIDCEKKQVFDTNGYTWMPSPEFVDDVSDSYEELYKRISGSVYRVSSVYIIQNNRRIFEFVHAKLHRGAIPMVGFKVPEVLSWNGTPIFLARIRFPDKGG
>NZ_CP007633.1|WP_015919204.1|977562_978579_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSNPKAITATIVFESSAVNRDENIANNIQSLKKLRREDGVYTFFSRASMRHHVFNALVRKHGWKPARVAKDGDVIQFDVLEESILTSEELDFFGYMRTFESASLSRKAPVGMTKAVSLEKWEGDMAFYANHDLVQRAREIGESADPNPFSKEEHLSLYKYSVVVDLENIGKEKVIINEKQCEKLNRLFGIDLKELKEKESIANDKGTISLESVGEKSYRILVTLNDPEKQKRLKQFFDIIINGFEIHSSTESWCVSPVFIVIATTRLPVTLFNPYIKLDDGKIDVDLVAKIAEENTNVIDYRIWGVPFILKGEVDKLCKGPKDLNDWVTGVIGGKENS
>NZ_CP007633.1|WP_144399156.1|976355_977570_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MLDELYLIDNFDNLSLPRLFVFILEETARIEGDIRKAYNYFKGNVGYYENYVAQVKEKQFMENLSKIVHYIFRKPSLEGTDRCFFCGNSLKTDEDRSILQRKQFSRILFKDFSSSEGKFPNSFWNMSNEFYLCDVCSQMALFRHFVFPKSGESIFVNVPSFKAIWYLNEAIKAYRDLSLELSVSRAISEVHLKLQRLLGIWERQNVEVIYYNSKSYRIYYMPQRVINLLLNTRISSILNSLNSIKIFEAVIYQERLNEILECEYLLLKYLFDVSSSGRSHLAENVKQYVGDVKRNAGYYMNTLPDLFQEVRSVMGVKQMVPVWRMRELGKEASQLFERTRYRLLELIRLAKKDEVYHLILKTYMANNKPFPEDLNRVFSAKDEDFKNLMFAYVSGMISGGEENE
>NZ_CP007633.1|WP_038067033.1|975483_976212_+|CRISPR-associated-endoribonuclease-Cas6
MRIFVKIQPESGSEGKFPADYRRIFMSLLKQVYKRTPFEEIVNSHDRIPKPYVFSVGFNKIKDISGDSIIFESPIFFNFSSSIPQMVGYLYNYIVSQDSIMNGLKVAGVDLPVPKIITSKTVTFKIMGSAVLTRAEKDRYYVLPEDNDFEEALNHSIQVRLNLSRELFETFGVRIPNFKPVKVVNKNLRKVPAKHYGGYIEAFSGTITLDGDPDVLSFLHENGLGVRTGQGFGMLKVVREWH
>NZ_CP007633.1|WP_038067006.1|974195_974537_-|J-domain-containing-protein
MNPYEVLGVEPGASKEEIERAYRELVKKYHPDRYKDHPLRDLAEEKMKQINEAYQMLMNEEPEKNYSEEDSRFFSYSMGYRNNECRDILACLGCAWCTDTCCEACGGDCIPCM
>NZ_CP007633.1|WP_041844145.1|973734_974205_-|hypothetical-protein
MHVKKISYGGLISALVVLLLYTGNFTKSKIFFAALCSVFVGFLVELFGKGAIPLIAALNLLSFLLVPNPGYVSIFLVLSFYSFVRKKSLLYRLFYLNAGFFFLLIVAIRFFKVELPEVSPILYIPGMLGLQIAFLAYDYLYARILDYLLHIVRERR
>NZ_CP007633.1|WP_015919213.1|987267_988107_+|GGDEF-domain-containing-protein
MKNGRFEFLKRVLGSIQSIRGFVLFESVGGELSVKTSVGKVPLFFKEGFSFTTDEIFELLKFQCDTAVVSVMKDREWSKMLVLFLEKPLEKETLSLIQSLMSVSECEDLFFDMKELEYMAYHDPLTGLPNRRYFFELGGKYLDIAKREDKKVFILFLDLSGFKKINDTYGHPFGDEVLKTVSKRILDRIRKSDVISRFGGDEFTLLLYDMKEDYLDSFLKRLFSAFKMPVKIGNTEISVSANVGVARFPEDGTNLEELLKMADSRMYEAKKMKIPYVFV
>NZ_CP007633.1|WP_144399089.1|988115_988583_-|DUF192-domain-containing-protein
MNLRRLLLLALIAAGISVIIVVSNRENRVKFPEGEIVITDGERSLKLRVEIANTPFFRSIGLMYRKSIPDDFGMLFVFEEDTRSGFWMKNTYVPLEIAFIDRNGIVFSIQEMEPCEKEPCKVYYAPKPFRYALEVKRGFFERHGFGVGSRVLIEK
>NZ_CP007633.1|WP_015919215.1|988600_989935_-|xylose-isomerase
MAEFFPEIPKVQFEGKESTNPLAFKFYDPEEIIDGKPLKDHLKFSVAFWHTFVNEGRDPFGDPTADRPWNRYTDPMDKAFARVDALFEFCEKLNIEYFCFHDRDIAPEGKTLRETNKILDKVVERIKERMKDSNVKLLWGTANLFSHPRYMHGAATTCSADVFAYAAAQVKKALEITKELGGEGYVFWGGREGYETLLNTDLGFELENLARFLRMAVDYAKRIGFTGQFLIEPKPKEPTKHQYDFDVATAYAFLKSHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKLGSIDANQGDLLLGWDTDQFPTNVYDTTLAMYEVIKAGGFTKGGLNFDAKVRRASYKVEDLFIGHIAGMDTFALGFKVAYKLVKDGVLDKFIEEKYRSFREGIGRDIVEGKVDFEKLEEYIIDKETIELPSGKQEYLESLINSYIVKTILELR
>NZ_CP007633.1|WP_038067045.1|990043_991234_+|M20-family-metallo-hydrolase
MEITRKIEELKDEMVDSLKRFISINSVNPVFGGPGEKEKADWLEELLKKMGYTVERHDTKDQNGIWRSNLLAIIPGRDRSKTLWIVTHIDTVPPGDLSLWETDPFIPVVKDDRVYGRGAEDNGGSMIASIYAGKALMELDVVPEYNFGLALVADEEAGSEYGIQYLIEKGVFRPDDMFLVPDAGNKKGDFIEIAEKSILWFKVTVNGKQGHASRPKTTENALRKGAQIITELDETLHRKFSEKDELFDEPLSTFEPTRSEKTVDNVNTVPGRFVFYFDCRVLPRYDLEDVLSTVKSVLDGRGAELEVVVKQPAPDPTPADSDLVVKLSSVLKSLRNLEVRVGGIGGGTCAAFFRKKGWPAVVWSTIEETAHQPNEYRKISHMVEDAKVFALLGVER
>NZ_CP007633.1|WP_038067049.1|991238_991787_+|ATPase
MLRTIADHLMDIAQNSVKAGARNIKITIEETDEWFTFTVEDDGPGIENPEKVFDPFFTTRDPRLRKVGLGLPFLKQAAEQSGGKVSLWTQPGKGTVVKASFNLKSVDCQPIGDLAGTLASLILSDPNVNWYVLRKKDGRGYEIDTSKLKEAGLWDPENPRFASFLFETLENLEEDLKRGEEK
>NZ_CP007633.1|WP_015919218.1|991783_992419_+|class-I-SAM-dependent-methyltransferase
MSEKKFEHYYTVEPTSKLKVREAKLVLKNGHEYVFKTPSGVYSYGKIDKATKVLLENMKVHGKKVLDLGCGYGVIGIVLKKEYPDLEVYMSDINKRAVEFAKINAKDHNVEVEVRWGNLYEPWEGMKFDMIVCNPPIVAGKEVWMEIVRRAPEFLEDGGSLQLVAYHNKGGRRIREYMREIFGNVEELCKSGGIRVYRSVKGLKEDEDIVE
>NZ_CP007633.1|WP_015919219.1|992399_993164_+|ABC-transporter-ATP-binding-protein
MKISLNDVSFGYNGRHVLKNVNMEFETGKIYIVVGKNGSGKTTLLKVVSGLLEAEGTILIDGEPADPLMLRRNVGYVFQNPSSQIIGATVEEDVAFSLEILGIDRDEMQRRIKRVLELVGLSGLEKEDPLNLSGGQKQRLAIASMLARDTHFLAMDEPLSMLDPPSQREISKVIEDLKREGKGIIIATHELEYLEDFDVVLHMRDGTIDFCGSWEAFMDKGFEDVEVPFKWKLWKKFGKESKWEVEDADTFDER
>NZ_CP007633.1|WP_015919220.1|993138_993894_+|5'/3'-nucleotidase-SurE
MRILLTNDDGINSKGIILLAEYLSKEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISEDVVAYSTTGTPADCVKLGYNVIMEKRVDLVVSGINRGPNMGMDILYSGTVSGAMEGAMMNIPSIAISSASYESPDFEGAARFLISFLKEFDLSLLDPFTMLNINVPVGEIKGWKLTRQSRRRWNDYFEERISPFGEKYYWMMGEVIEDDDREDVDYRVVQQGYVSVTPIHPFLTNEGCLRKLREVYESCTE
>NZ_CP007633.1|WP_015919221.1|993881_994376_+|peptide-deformylase
MYRVRVFGDPVLRKRAKPVTKFDEALKRTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNGPVAVINPEILEASPETEIAEEGCLSFPEIFVEIERSKRVKVRYQNVRGEFVEEELEGYPARVFQHEFDHLNGVLIIDRIKPAKRLLLRKRLMDIAKSARG
>NZ_CP007633.1|WP_015919222.1|994389_995361_+|M23-family-metallopeptidase
MKKWLLILALVLLFSVVFSFSPPVDSPRVSASFGEYRGSGNRGPHFHMGMDFSTGLKEGVPIYASERGWLVRLEIDRDDIYGYTVVLEHENGYRTLYAHLSGFAKKLEVIVESLKEEFGDVRIVVEFPEKEIWFEKGEVVGYSGTTGEAPIPHAHFEIRDKKEEVSYDPSNFLNLQKPVDEDIFLENLKIGDNVYDFVENRTYPFTGNFPVLSIKAYSRGFNNTLGLKKISLLMEGEEIYQISFEQIPWSEFTNVWGVYDRKSVSAAYRFELWYKLFPETFSSLVKVNKFPEIGKFPDFAKYTIVLEDIWGMKKEFSFYLQRR

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Crispr_ID: NZ_CP007633_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007633_4

1011390-1012080

Orphan

III-A

Consensus_repeat	Method
GTTTCCATACCTCAAAGGAAGTATTGAAAC	PILER-CR
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CRT

10 spacers

The CRISPR arrays of NZ_CP007633_4

>merge|NZ_CP007633|4|1011390-1012080|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATACTTCCTTTGAGGTATGGAAACTCGAAGTTCTCGTCTATGCTCGAAGTGCCGAGTTTATGTTTCAATACTTCCTTTGAGGTATGGAAACATCCGCCCTTAGGGTTCGTGTAAATGGCGTACTTCAGTTTCAATACTTCCTTTGAGGTATGGAAACACCTCACCCGCCACGACAAAGCATTCGCCGTGGCTAGTTTCAATACTTCCTTTGAGGTATGGAAACCCAGGGCGACGTACAGACCCTCGTATGGGAAGGCGAGTTTCAATACTTCCTTTGAGGTATGGAAACTCTTTCTCTTTGTTTCCTCTGCGATGTATCTCCTCTGTTTCAATACTTCCTTTGAGGTATGGAAACCTCTCTTCCGCATTTCGTCGTTTAAGAGAGGCAGTGTTTCAATACTTCCTTTGAGGTATGGAAACGGTTCGATCCAAACTTCCTCGTCTTTGCGGATATTGGTTTCAATACTTCCTTTGAGGTATGGAAACAAGAATTGTACAAATGGTTAGAGCACGCAGACATCGGTTTCAATACTTCCTTTGAGGTATGGAAACCCCCTTTCTTTCGAGCGCTTTGAGGTTTGCTGCCGGTTTCAATACTTCCTTTGAGGTATGGAAACGAGTGTTCTGGCAGGCGAAAGAACTTTTTGATGAGAAAGTTTCAATATTTCCTTATAGGTACAAACCC

>NZ_CP007633|4|4|1011390-1012012|PILER-CR
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TCGAAGTTCTCGTCTATGCTCGAAGTGCCGAGTTTAT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	ATCCGCCCTTAGGGTTCGTGTAAATGGCGTACTTCA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	ACCTCACCCGCCACGACAAAGCATTCGCCGTGGCTA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCAGGGCGACGTACAGACCCTCGTATGGGAAGGCGA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TCTTTCTCTTTGTTTCCTCTGCGATGTATCTCCTCT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CTCTCTTCCGCATTTCGTCGTTTAAGAGAGGCAGT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GGTTCGATCCAAACTTCCTCGTCTTTGCGGATATTG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	AAGAATTGTACAAATGGTTAGAGCACGCAGACATCG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCCCTTTCTTTCGAGCGCTTTGAGGTTTGCTGCCG
GTTTCAATACTTCCTTTGAGGTATGGAAAC

>NZ_CP007633|4|4|1011390-1012080|CRISPRCasFinder
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TCGAAGTTCTCGTCTATGCTCGAAGTGCCGAGTTTAT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	ATCCGCCCTTAGGGTTCGTGTAAATGGCGTACTTCA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	ACCTCACCCGCCACGACAAAGCATTCGCCGTGGCTA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCAGGGCGACGTACAGACCCTCGTATGGGAAGGCGA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TCTTTCTCTTTGTTTCCTCTGCGATGTATCTCCTCT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CTCTCTTCCGCATTTCGTCGTTTAAGAGAGGCAGT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GGTTCGATCCAAACTTCCTCGTCTTTGCGGATATTG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	AAGAATTGTACAAATGGTTAGAGCACGCAGACATCG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCCCTTTCTTTCGAGCGCTTTGAGGTTTGCTGCCG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GAGTGTTCTGGCAGGCGAAAGAACTTTTTGATGAGAAA
GTTTCAATATTTCCTTATAGGTACAAACCC

>NZ_CP007633|4|3|1011390-1012080|CRT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TCGAAGTTCTCGTCTATGCTCGAAGTGCCGAGTTTAT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	ATCCGCCCTTAGGGTTCGTGTAAATGGCGTACTTCA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	ACCTCACCCGCCACGACAAAGCATTCGCCGTGGCTA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCAGGGCGACGTACAGACCCTCGTATGGGAAGGCGA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TCTTTCTCTTTGTTTCCTCTGCGATGTATCTCCTCT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CTCTCTTCCGCATTTCGTCGTTTAAGAGAGGCAGT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GGTTCGATCCAAACTTCCTCGTCTTTGCGGATATTG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	AAGAATTGTACAAATGGTTAGAGCACGCAGACATCG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCCCTTTCTTTCGAGCGCTTTGAGGTTTGCTGCCG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GAGTGTTCTGGCAGGCGAAAGAACTTTTTGATGAGAAA
GTTTCAATATTTCCTTATAGGTACAAACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007633.1\|WP_038067093.1\|1013091_1015689_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP007633.1\|WP_015919230.1\|1001330_1002992_+\|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl\|CDD\|378342
NZ_CP007633.1\|WP_038067062.1\|1007192_1007849_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007633.1\|WP_015919234.1\|1006612_1007209_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NZ_CP007633.1\|WP_004082369.1\|1019920_1020772_+\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NZ_CP007633.1\|WP_041844151.1\|1020784_1021594_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|279798
NZ_CP007633.1\|WP_041844147.1\|1009120_1010017_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP007633.1\|WP_004082367.1\|1018362_1018986_+\|N-glycosylase/DNA-lyase	unknown	unknown	gnl\|CDD\|234924
NZ_CP007633.1\|WP_015919243.1\|1012693_1013062_+\|dinitrogenase-iron-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224350
NZ_CP007633.1\|WP_038067065.1\|1008294_1009116_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|272894
NZ_CP007633.1\|WP_015919232.1\|1005044_1006313_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|200452
NZ_CP007633.1\|WP_004082365.1\|1016224_1016740_-\|chromate-transporter	unknown	unknown	gnl\|CDD\|224970
NZ_CP007633.1\|WP_015919236.1\|1007845_1008304_+\|YaaR-family-protein	unknown	unknown	gnl\|CDD\|224642
NZ_CP007633.1\|WP_041844150.1\|1016852_1018358_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP007633.1\|WP_015919233.1\|1006327_1006609_+\|DUF503-family-protein	unknown	unknown	gnl\|CDD\|224467
NZ_CP007633.1\|WP_041844149.1\|1012263_1012680_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NZ_CP007633.1\|WP_038067078.1\|1002991_1005043_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
NZ_CP007633.1\|WP_038067070.1\|1010029_1010758_-\|aspartate-dehydrogenase	unknown	unknown	gnl\|CDD\|163567
NZ_CP007633.1\|WP_004082364.1\|1015720_1016221_-\|chromate-transporter	unknown	unknown	gnl\|CDD\|224970
NZ_CP007633.1\|WP_038033138.1\|1018997_1019924_+\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|259802

Protein	Function_ID	Function_description	E-value
NZ_CP007633.1\|WP_038067093.1\|1013091_1015689_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP007633.1\|WP_015919230.1\|1001330_1002992_+\|phosphodiester-glycosidase-family-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	2.03255e-19
NZ_CP007633.1\|WP_015919234.1\|1006612_1007209_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	6.49253e-64
NZ_CP007633.1\|WP_004082369.1\|1019920_1020772_+\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	2.4416e-118
NZ_CP007633.1\|WP_041844151.1\|1020784_1021594_-\|hypothetical-protein	gnl\|CDD\|279798	pfam01501, Glyco_transf_8, Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase.	5.6652e-05
NZ_CP007633.1\|WP_041844147.1\|1009120_1010017_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	3.45425e-159
NZ_CP007633.1\|WP_004082367.1\|1018362_1018986_+\|N-glycosylase/DNA-lyase	gnl\|CDD\|234924	PRK01229, PRK01229, N-glycosylase/DNA lyase; Provisional.	9.73323e-110
NZ_CP007633.1\|WP_015919243.1\|1012693_1013062_+\|dinitrogenase-iron-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|224350	COG1433, COG1433, Uncharacterized conserved protein [Function unknown].	2.34814e-34
NZ_CP007633.1\|WP_038067065.1\|1008294_1009116_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|272894	TIGR00078, Probable_nicotinate-nucleotide_pyrophosphorylase, nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	4.95578e-110
NZ_CP007633.1\|WP_015919232.1\|1005044_1006313_+\|alpha-amylase	gnl\|CDD\|200452	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	1.26709e-156
NZ_CP007633.1\|WP_004082365.1\|1016224_1016740_-\|chromate-transporter	gnl\|CDD\|224970	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism].	6.88435e-37
NZ_CP007633.1\|WP_015919236.1\|1007845_1008304_+\|YaaR-family-protein	gnl\|CDD\|224642	COG1728, COG1728, Uncharacterized protein conserved in bacteria [Function unknown].	1.31229e-47
NZ_CP007633.1\|WP_041844150.1\|1016852_1018358_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP007633.1\|WP_015919233.1\|1006327_1006609_+\|DUF503-family-protein	gnl\|CDD\|224467	COG1550, COG1550, Uncharacterized protein conserved in bacteria [Function unknown].	5.47688e-37
NZ_CP007633.1\|WP_041844149.1\|1012263_1012680_+\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	1.23759e-11
NZ_CP007633.1\|WP_038067078.1\|1002991_1005043_+\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NZ_CP007633.1\|WP_038067070.1\|1010029_1010758_-\|aspartate-dehydrogenase	gnl\|CDD\|163567	TIGR03855, NAD_NadX, aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.	4.19224e-111
NZ_CP007633.1\|WP_004082364.1\|1015720_1016221_-\|chromate-transporter	gnl\|CDD\|224970	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism].	2.94036e-31
NZ_CP007633.1\|WP_038033138.1\|1018997_1019924_+\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.57066e-127

>NZ_CP007633.1|WP_038067070.1|1010029_1010758_-|aspartate-dehydrogenase
MRVLIIGVGNIGKQILKMTHFEKVYAFDKFRKDHIPDIHWLEEFHVPEDVDTVIECASPEAVKEYSSQILKSPVNYLIISTSAFADRVFRESFFEELKVSPAKVFFPSGAIGGLDLLAAVRKNIHRVIIETRKHPKSLGINIEGETTVFEGSVEEAAKLFPRNINIASTVGLIAGFEKVKVIIKADSSLSNNVHIISVISDVGKYEFRIENLPSPENPKTSMVTVYSILKTIESLNSKIVFG
>NZ_CP007633.1|WP_041844147.1|1009120_1010017_-|quinolinate-synthase-NadA
MIDKILKLKKEKGYVILAHNYQIPELQDIADFVGDSLQLARKAMDLEEKKILFLGVDFMAELVKILNPEKKVIVPDRSATCPMANRLTPETIEEYKRKYPNAPVVLYVNSTAECKTLADVICTSANAVDVIRKIDSDVILFGPDRNLAEYVAEKTGKKIFAMPEDGHCPVHQFSENSVDIAKKKHPDARVVVHPECPKPVRDKADYVGSTGQMEKIPEKDTAKTFVIGTEVGMIHKLKKKFPDRNFIPLESAICVNMKKNTLENTLLALETESFEVTLPEDIIEKARRPILKMFEIMG
>NZ_CP007633.1|WP_038067065.1|1008294_1009116_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MEKLLEILSSHVREDEGNLDIASFPLRNTTSRATVFLKTENVVASGIELAQRFLEKYHLKSIFHVKDGEFIPKKGAIGEIEGNTYSLLLIERTLLNTLSLMFSTATVTRRFARKLKHAKIAATRKTIPGFSLFQKLAVMHGGGDTHRFNLGDCVMIKDNHLKLYGSVEKAIQEVKKISSFTRKIEIEVENMEDALKAVEMGADIVMLDNMSPEMVEKVSKKIKEMNPNVVVEVSGGITEENVSDYDIETVDVISTSRLTLSEVFVDLSLEIQR
>NZ_CP007633.1|WP_015919236.1|1007845_1008304_+|YaaR-family-protein
MRIDPLGGESLKNQEVKGKKSKRTSRTGEVDKKEFFDIMKDISVEQFEKLLKEALEEVIESGNELVRSPTPSNLKRYKNAIKEFLKLVEKKLYKLSGSFDMTSGKAKLHVVVEEVNEKLMDLAEKIMKNEWQTINLAARIEEINGLILNLYR
>NZ_CP007633.1|WP_038067062.1|1007192_1007849_+|hypothetical-protein
MKRSSKILLIVVFVVVAVIAVGFLYYRSFLSSPDYRAKEIHYLFRVEGESYFVRIDDTKRMVYIVSFPKESYDPERKESLFSERPLSDLEKIENLLKVKAERVFYSVMSKEEFLKLSQNLLGKQVESFTDFVKELSKRKVKLFDFLFVGSWVKNFGFNNLNRFSLYKFLEKVSSYAIDIFEAPTITKAPVIVKVQGKEYRRLYLDPEKLEVITEEMKR
>NZ_CP007633.1|WP_015919234.1|1006612_1007209_+|HD-domain-containing-protein
MTLVIDELEAILNRVLSKKRIVHVKSVVDFSKRLGEIYNVDLNRLELAALSHDMFRDVPPRKLLKMSRAYGLKISDLEKAHPVLLHGKVAAEFLKRRFGVDDEEVLIAVAYHTSGHVGFREIGKILFIADSLEFTRDFPGVDALRKIAFRNLEEGFFQVLKNKIFYAVGRDLLLIPETVELWNSILMSRGGHVDEEVE
>NZ_CP007633.1|WP_015919233.1|1006327_1006609_+|DUF503-family-protein
MNIGVVNLRVRLFGVRSLKEKRGILRRLMNDLRKKYNISISEVGAHDSKNFFEIGIAMVNTDKAFIEKVFDAIIDYLELYPGMEVEEAEREVW
>NZ_CP007633.1|WP_015919232.1|1005044_1006313_+|alpha-amylase
MNLKNLIIYEAFARAYPGEKGKKFLSLEKDLERLKGMGINTVWLMPIHPTGVEGRKGTLGSPYAIRDYYEIDLLIGTKGDFKKFVKRAHELNMYVLMDMVLNHAAVDNVLVKKHPEWFLRDENGNPTRKVPDWSDVVDFDYSNGELREYMINMMRYWVEEFDVDGFRCDVAGLVPLDFWLQARKNLDPVKRLIWISETHDPYMYQAFDITYDYDGYYRFRDFIEGKNSLREYIDFLRMQDHMYPRGYIKMRFLENHDQPRVAKFLSRESLMHWIAFLFTVKGVPLVHNGQEYALKEDLDIFNEYTLPIPGEENEIFSLHRKLAHYRYKTNVFSNGEMIFIRNDQPERVISYLWRHGNRFILCVLNPLLENTSVTLDFSGIWENICIHSKNVFNDDIVRVSVKNSRAKIKVGREPLILSFVLY
>NZ_CP007633.1|WP_038067078.1|1002991_1005043_+|elongation-factor-G
MGDIRNVRTAALIGHNGSGKSLLLARILYKLNMIDKPETKYVDYDPVEEEKGASFSSHVASFEWKGKRMFLIDTPGFADFISEVINAIFVAENVVSVVNAVAGVEIQTERTWNLAEEMKKPIMVFVNQMDKERANFDNVVAELKERFSRKILPLVVPIGAAENFEGVVDLLKKKAYRYNGEEPVEEDMPSEFDELRSEILEDIVEQDEELMMRYLDGEEIGYDELVKVLKESYRKGELVPVIAGSALSGIGVDVLLDYLENIGVSPAEASPYRATMEDGKEVEIPFSEEEPFCAYIFKSVVDQFVGRITFAKVIAGTLKSGDTIVNVQKDTSEKVGHVYLPVLKQQKEVESVGPGEIVVLLKLKEGAVGETLAHRDRRVKIIAPSFPEPMFSRSVHPKSKSDIDKISGGLSRLSDSDPTFVWEYDPETGETVISGLGAMHLDVMVERLKKIFGVDVEVGRPKIAYRETITATAIAEHKHKKQTGGHGQYGHVKIQLEPLPRGQGYEFVDKIVGGVIPRNFIPSVDKGVREAMKRGVLAGYPVTDVRVILFDGSYHEVDSSDISFQIAAIQAFKKGMEAAKPVILEPIMEVEVFVPEENAGDVMGEISSRRGRPLGMEPSGKGMVKVKAEVPLAEMLDFSNKLSSITSGRGYFTMRFQRYEIVPPNIQEKIIEERRREMQEQEK
>NZ_CP007633.1|WP_015919230.1|1001330_1002992_+|phosphodiester-glycosidase-family-protein
MKQLMFIFLLLACLSFASYVISGKEAFPVRSVFRDGVYYVYVEDLSPVGVGYIHANGYHYVVYDDHVLFVKEKETVLDFVKKLSPPLFLEGKLLLPIDAVKELMEGFQVYTKGENVLIYNSLPILLSATKEKDRIVISYTGVLVPDMVEVEKSMGRVVLKISPVVENIPVVSEGIEVKPGKNEITIITSIGNFYPDVRLTFEKNRLVCQLALIEGFFGKLEIADGVVFERKIEEFGKGEKTVVNYLIMDPEKVEVKPVIAEKGFGSLEKLDDMVKRVGGVAGINGNYFDPVTKFPIGLVVIDGKPYSTMFSGRPIFAITEEGDVFIGRVLVDVTLTVNDVLFLVKGINTLGEGEVLVYTKEFSGTIPKKDDKLYFVVEGNTVKYLGYKEKAEGSESVIAVSRKYETYLSNLKIGDRAYLSIQPNLPIRIRQAVEGGPLLIQNGAPIPDAQEEKARYGGGIAYAKAPRTVVATKNGKLWFIVFEGYNHITRGLNYDELVDFLLSRGFEDAMCVDGGSSSVMAVGGNLFGKAENSTAAIPVGIVVWEKKSTEVGE
>NZ_CP007633.1|WP_041844149.1|1012263_1012680_+|ferredoxin-family-protein
MESKNTPVIGKDALGREIRDLSKIPWWGVDRKAIEWYPVINYDKCATCGICFVTCGRRVFDFDRKEGKVIVARPYNCMVACQTCMNLCPTGAISFPDVSYIKKLVAQNKIVKKAFEIIKPLLPDEHLSTKETETDPEP
>NZ_CP007633.1|WP_015919243.1|1012693_1013062_+|dinitrogenase-iron-molybdenum-cofactor-biosynthesis-protein
MIIAIPVSENKGKDSPISEHFGRAPYFAFVKVENDKVLDISVEENPLAQDHIAGAVPNFVKEKGAELVIVRGIGKRAFSIFETLGIKVIRGASGTVEEVVNRYLAGQLRDLDYEVREKFHHH
>NZ_CP007633.1|WP_038067093.1|1013091_1015689_-|valine--tRNA-ligase
MAELSTRYNPAEIETKWYRYWEEKGYFTPKGVGEKFSIVIPPPNITGRIHMGHALNITLQDIVVRYKRMKGYDVLWVPGEDHAGIATQNAVEKFLLQTQGKTREEIGREKFLEITWEWANKYRREIREQIKALGASVDWTRERFTLDEGLSRAVRKVFVELYKKGLIYRGKYIVNWCPRCKTVLSDEEVEHKEHQSKLYYVKYPVKDSDEYIVVATTRPETMLGDTAVAVHPEDERYKDFVGKTLILPLVGREIPVVADKYVDPKFGTGAVKVTPAHDPNDYLIAQRHNLPMVEIFDDNARINENGGKYRGLDRYEAREKIVKDLEEQGFLVKIEDYTHSVGHCYRCDTVIEPKLSDQWFVATKPLAKRGIEAVEKGEIKFFPERWTKIYLNWMYEIRDWCISRQLWWGHRIPVWYCQDCGHINVSEEDVEKCEKCGSTNLKQDEDVLDTWFSSALWPFSTLGWPEETEDLKRYYPTDLLVTGFDIIFFWVARMIMMGYEFMNEKPFSHVYIHQLVRDKYGRKMSKSLGNGIDPLEVIDEYGADPMRFTLAILAAQGRDIKLDPRYFDAYKKFANKIWNATRFVLMNLEDYKEVPLENLKTVDKWILTRLNKTVKEVTSALENYDFNIAARTIYNFFWDEFCDWYIEASKPRLKTEERHLVQTLLVKTLDTSLRLLHPFMPFLTEELWQKLPVDGESITIAKWPEVEEENIDEAAEKEFTRLMNMIRGVRNVRAEMNLPQSQRVRIFVKGLEITDEMKLLLKTLGNIEEIAIVNEKPQKTATAYVEESVEVYVDLGGLIDFEKEKERLKQNMEKIKKEIDRLEKKLSNKDFLEKAPEEVVEETKERLESNRERLERLESILKDLE
>NZ_CP007633.1|WP_004082364.1|1015720_1016221_-|chromate-transporter
MLKLAFIFLKIGFLSFGGGWAIVGILKNELVTGGFLSPEEFSQAVSIAQMTPGPVAINLATYTGYKFFGLIGAVLNTLAFLGAPILVITTAIFLRKYVKLQRVRLMKALEGATTTLLIVTLLSLLSSVQNPVLILLSAAAFVCSFFKVHPLFIIFGCGVIGAILGF
>NZ_CP007633.1|WP_004082365.1|1016224_1016740_-|chromate-transporter
MIGRLFFLFLRISALTIGGGYAMIPVMKWELERSGLLTEKEFFRIMSTAQVVPGPIAFNTAVLVGRRLAGIYGAIASGLAVVLPPFFAIVAVAEVIRTLSGISYVRSFLRGAYASIIGLVGSVLYRLVRNQRWNLYRAIMIGVAVFVLLLNGSLVIPVVILLVLLLYLKEV
>NZ_CP007633.1|WP_041844150.1|1016852_1018358_+|glutamine-hydrolyzing-GMP-synthase
MVLVVDYGSQYSRLITRRIRENEVYSEVVFPDDKVDLSKVDAVILSGGPRSVYEEDAPKLPEWFQEYKGPVLAICYGMQLIVKEFGGEVKRGRGEYGRTLVELSKDPIFEGIPEKVQVWMSHGDEVVRLPEGFHPIAVSETGVIAAATDGKRFWLLQFHPEVHHTEYGDRMISNFLFNVCKLEKNWKIGDLVEEKIRHIKETIGNKKAILALSGGVDSSVAAVLVHRAIGKNLVCVFVDHGLLRKNEREEVERVFKEHFDMNLVVVDARKRFLEKLRGVTDPEKKRKIIGEEFIRVFEEEAKKHDVEFLVQGTIYSDVIESAASGKTTAKIKSHHNVGGLPEKMNLKLVEPLRDLFKDEVRKVGTYLGIPDRIINRHPFPGPGLAVRVLGEVTEEKLEILREADYIFIETLRKHDYYDKVWQAFAVLLPIKSVGVKGDARAYEYVVALRAVNSVEGMTADWSRIPHDILDEAARRITREVKGIGRVVYDITSKPPATIEWE
>NZ_CP007633.1|WP_004082367.1|1018362_1018986_+|N-glycosylase/DNA-lyase
MEELLKELERIREEAKPLVEQRFEEFKRLGEEGTEEDLFCELSFCVLTANWSAEGGIRAQKEIGKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAFGESPGKFDLYLWYLVKGKVDK
>NZ_CP007633.1|WP_038033138.1|1018997_1019924_+|FtsH-protease-activity-modulator-HflK
MRKYVWIVVFIVLGIYFLTGVYQVGPSEVTLLKTFGRFTSVVPSGIHYHLPYPIQSHVTVDVTTVRKIEIGFRSIQRGERISYQSVPQEAIMITGDNNLVSVEAVVQYRVKDPVAYAFNITEADSIVRFTTESVLREKVAMRSIDDVLTSGRDEIGFETARMLQEILDSYNCGIKVENVYLQEVVPPDPVVDAFDDVNNARQDKERLINEARKYANDVVPKAQGQAQEILRQAEAYAQEVYLKALGEAKRFEEVLEEYSKAPDITRKRMLLDALQSLLEKSENKVFFVGNGDSLNILNISDLLKGMGK
>NZ_CP007633.1|WP_004082369.1|1019920_1020772_+|protease-modulator-HflC
MKIWMISLLIILIVVGAILLFSSFYVLDQTQQAVVLRFGKIVAVETEPGLHFKQPFVDNVVRFDKRILLYDIEPEKIIAADKKTLVIDTYVLWRIKDAEAFIKSLKSVKLALPRIDDVVYSHVRNIFAKANFDEIISEKREDLLREVTALSREDLKDFGIEVVDVRVKHADLPAENEKAVYERMKAERYSIAAQIRAEGEKEARKIRAEADKTAKVLIAEAQSKAEQIKGTGEASAVKIYAEVFSKDKDFYEFWRTMEVYRSIEKGILIIGDELDALKYLKTK
>NZ_CP007633.1|WP_041844151.1|1020784_1021594_-|hypothetical-protein
MNLIATAGNDRIRDFLVNDWYRSLKENVNLSNTDVLVINYGLTGLPKEVINFPAVERSGLINNTRFINLAIFLENHPEYDQILFCDGGDIIFQSDISHLFEEHRDAFRAVVEQLSPPIDLVVKEEDLVNGKEIKSFLSNKKLFNVGVIIAPREGFLEFARTMERRLKNINVWGGDTVIGNYVIYKNPHVELPSKYNFIPSTAREKFYVKDSKFYLENGELIPIVHNAGRYRFLRPVKDFGYGPGKNRVNKFNIWMFRMLFSVSNFLKMK

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Crispr_ID: NZ_CP007633_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007633_5

1090292-1090660

Orphan

III-A

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAAGTATTGAAAC	PILER-CR
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CRT

5 spacers

The CRISPR arrays of NZ_CP007633_5

>merge|NZ_CP007633|5|1090292-1090660|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATACTTCCTTAGAGGTATGGAAACCACATTCTACGTGGATCGAATCGAGATCCTCAAGAAGTTTCAATACTTCCTTAGAGGTATGGAAACTGTGAGGTCTCCCGCCGGAAGGCCAGACAGCGTGTAGGTTTCAATACTTCCTTAGAGGTATGGAAACAACAAGTTCGAACCTCGTAAATTTTCAGGGTTCGCACCTGGTTTCAATACTTCCTTAGAGGTATGGAAACGCAGAAAGCGTGTGTACTTTGACGTTCCCGTGAAGAAGCGTTTCAATACTTCCTTAGAGGTATGGAAACAGCGGCACACCTGAGTTGAAGAACTCGGAGAACTTCAGTTTCAATACTTCCTTAGAGGTATGGAAAC

>NZ_CP007633|5|5|1090292-1090660|PILER-CR
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CACATTCTACGTGGATCGAATCGAGATCCTCAAGAA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TGTGAGGTCTCCCGCCGGAAGGCCAGACAGCGTGTAG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AACAAGTTCGAACCTCGTAAATTTTCAGGGTTCGCACCTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCAGAAAGCGTGTGTACTTTGACGTTCCCGTGAAGAAGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGCGGCACACCTGAGTTGAAGAACTCGGAGAACTTCA
GTTTCAATACTTCCTTAGAGGTATGGAAAC

>NZ_CP007633|5|5|1090292-1090660|CRISPRCasFinder
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CACATTCTACGTGGATCGAATCGAGATCCTCAAGAA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TGTGAGGTCTCCCGCCGGAAGGCCAGACAGCGTGTAG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AACAAGTTCGAACCTCGTAAATTTTCAGGGTTCGCACCTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCAGAAAGCGTGTGTACTTTGACGTTCCCGTGAAGAAGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGCGGCACACCTGAGTTGAAGAACTCGGAGAACTTCA
GTTTCAATACTTCCTTAGAGGTATGGAAAC

>NZ_CP007633|5|4|1090292-1090660|CRT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CACATTCTACGTGGATCGAATCGAGATCCTCAAGAA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TGTGAGGTCTCCCGCCGGAAGGCCAGACAGCGTGTAG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AACAAGTTCGAACCTCGTAAATTTTCAGGGTTCGCACCTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCAGAAAGCGTGTGTACTTTGACGTTCCCGTGAAGAAGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGCGGCACACCTGAGTTGAAGAACTCGGAGAACTTCA
GTTTCAATACTTCCTTAGAGGTATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007633.1\|WP_041844184.1\|1079544_1081926_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379314
NZ_CP007633.1\|WP_038067349.1\|1082014_1082830_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|131023
NZ_CP007633.1\|WP_041844193.1\|1094275_1095109_-\|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	unknown	unknown	gnl\|CDD\|235747
NZ_CP007633.1\|WP_041844195.1\|1096344_1098906_-\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_CP007633.1\|WP_041844187.1\|1086630_1087392_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|378975
NZ_CP007633.1\|WP_041844190.1\|1090760_1092344_-\|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|237369
NZ_CP007633.1\|WP_041844191.1\|1092378_1092888_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP007633.1\|WP_038067352.1\|1084907_1085108_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP007633.1\|WP_041844196.1\|1098895_1100038_-\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NZ_CP007633.1\|WP_041844192.1\|1092875_1094279_-\|NADPH-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|183780
NZ_CP007633.1\|WP_041844185.1\|1083122_1083521_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NZ_CP007633.1\|WP_015919301.1\|1083517_1084678_-\|type-III-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143482
NZ_CP007633.1\|WP_015919320.1\|1102739_1103225_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NZ_CP007633.1\|WP_041844188.1\|1087378_1088128_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224769
NZ_CP007633.1\|WP_041844194.1\|1095731_1096352_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007633.1\|WP_015919317.1\|1100039_1100426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007633.1\|WP_041844189.1\|1088204_1089731_+\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236566
NZ_CP007633.1\|WP_041844186.1\|1085202_1086597_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP007633.1\|WP_041844197.1\|1100422_1102786_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP007633.1\|WP_015919299.1\|1082834_1083110_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223920

Protein	Function_ID	Function_description	E-value
NZ_CP007633.1\|WP_041844184.1\|1079544_1081926_-\|AAA-family-ATPase	gnl\|CDD\|379314	pfam13654, AAA_32, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	0
NZ_CP007633.1\|WP_038067349.1\|1082014_1082830_+\|septum-site-determining-protein-MinD	gnl\|CDD\|131023	TIGR01968, Septum_site-determining_protein_MinD, septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. [Cellular processes, Cell division].	1.06987e-146
NZ_CP007633.1\|WP_041844193.1\|1094275_1095109_-\|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	gnl\|CDD\|235747	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein.	1.40942e-167
NZ_CP007633.1\|WP_041844195.1\|1096344_1098906_-\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	4.96721e-65
NZ_CP007633.1\|WP_041844187.1\|1086630_1087392_+\|metallophosphoesterase-family-protein	gnl\|CDD\|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	2.22897e-28
NZ_CP007633.1\|WP_041844190.1\|1090760_1092344_-\|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|237369	PRK13376, pyrB, bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional.	0
NZ_CP007633.1\|WP_041844191.1\|1092378_1092888_-\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	5.29136e-43
NZ_CP007633.1\|WP_038067352.1\|1084907_1085108_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.48969e-33
NZ_CP007633.1\|WP_041844197.1\|1100422_1102786_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP007633.1\|WP_041844192.1\|1092875_1094279_-\|NADPH-dependent-glutamate-synthase	gnl\|CDD\|183780	PRK12831, PRK12831, putative oxidoreductase; Provisional.	0
NZ_CP007633.1\|WP_041844185.1\|1083122_1083521_+\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.05486e-69
NZ_CP007633.1\|WP_015919301.1\|1083517_1084678_-\|type-III-PLP-dependent-enzyme	gnl\|CDD\|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	8.83095e-174
NZ_CP007633.1\|WP_015919320.1\|1102739_1103225_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	1.03283e-44
NZ_CP007633.1\|WP_041844188.1\|1087378_1088128_-\|radical-SAM-protein	gnl\|CDD\|224769	COG1856, COG1856, Uncharacterized homolog of biotin synthetase [Function unknown].	1.11317e-99
NZ_CP007633.1\|WP_041844196.1\|1098895_1100038_-\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	5.71356e-49
NZ_CP007633.1\|WP_041844189.1\|1088204_1089731_+\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl\|CDD\|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0
NZ_CP007633.1\|WP_041844186.1\|1085202_1086597_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP007633.1\|WP_015919299.1\|1082834_1083110_+\|hypothetical-protein	gnl\|CDD\|223920	COG0851, MinE, Septum formation topological specificity factor [Cell division and chromosome partitioning].	0.000136641

>NZ_CP007633.1|WP_041844189.1|1088204_1089731_+|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MRRYLVLFLVLLLSVFLLGVRLTILHVNDTHGHAWTFDEYQNPGIGGLAAIATIVEEVKREVEEQGGYVIFLHAGDLNTGVPESDLQDAIPDIVGYNMIGLSAMAVGNHEFDNPRDVLLKQMKFADFPFLSANILKENGEPFFTPYILKDFGKLKVAIIGFTTEETTILEPLYLEGLKFENALKVAQKMAPELKNQADVVIALAHLDWGEPEKENITTTHQLAEVDGIDVVVAGHSHVLGSEVVGGKIIVSAGEYGKYVGRLDLDVEDGKIVAWHWQAIPVNLKVYRDGKYEYVGKPYLENRYVAKALEYFKKVGDEKLDTVIGETKIFLDGEREHVRSRSTNLANLITDAMRWKVKADIAFTNGGGIRASIKPGKITVRDILTVLPFGNTLYVLELTGEQIMKVLEYAATIPEGKGAFLQVSGLTWRSKDGKVVEVLVNGEPLDLKKTYRVVTNNYMASGGDGYTMLKEWGGYDTGYLMSDAVVEYIQSVLNGVIEEYDDSQRYIRE
>NZ_CP007633.1|WP_041844188.1|1087378_1088128_-|radical-SAM-protein
MTVDPSHTIPVSVTGTFCSLNCPHCEAHYLKHMISVEEIPVYVEKGYRSFLISGGMLPDGSIPFDRHENELREYKKKYDLLYNFHVGFQKSQLARDLADVVSMDFFGDSAVLKKIYRLNLTPEDILNISRFYRKVVFHITIGILGGQISHEEKALEILSKETDSIVLNVFIPTPNTRFGESPPPDLKEVLRIFEKARKLFKTVVLGCMQPKGLYRRDLQNIVKDLVDVVTKPVDGSGKFKGCCAFAISE
>NZ_CP007633.1|WP_041844187.1|1086630_1087392_+|metallophosphoesterase-family-protein
MRLAFFGDVHGNLEALNAVLEDIQRRGVDEIFCLGDLVGYGPDPEAVVQLIREKNIKTIMGNYDDAVGYSKESCGCSYSPGRETEVGDISLNWSIERTSEETKEFLRSLPKRMSFEVEGVKFLLVHGSPFNELLEYVKPDTSSERLKEIAHTVEENVVVNGHTHLPMVKWVLGKLILNPGSAGRPKDGDPRASYMIVDVKSGVISFETIRVVYDVKTTVEKIAKKGLPIELATVLALGQTFDMGPGKVTFTLK
>NZ_CP007633.1|WP_041844186.1|1085202_1086597_+|glutamate--tRNA-ligase
MVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDLERSSREFEKQILESLKWCGLDWDEGPDVGGDHGPYRQSERLEIYREHARKLVEEKRAYYVVYDKEDPTRELFSTFDYPEEYARKGHPVTVKFKVLPGKTTFEDLLKGQMEFDNSTIEDFIIMKSNGFPTYNFAVVVDDHLMEISHVFRGEDHLSNTPKQIMIYEAFGWNPPVFMHIPLILGPDRTPLSKRHGATSVEHFRKEGILSRALMNYLALLGWKVEGDEIFTIEERLQSFDPRDISNKGVIFDYHKLEWVNGKHMRRIELDDLKREFVEWAEYVGKTIPDVDDEYFLNSLRICREKVNTLSQLYDIMYPFLSEEYEYEKDYIEKFLKKEESEEVLKEVKKELEKLDNWNMEQIERVLREVAGRGIASKKVVFQLVRGAVTGKLVTPGLFETIEVLGKERTLRRLERTLRFLKDL
>NZ_CP007633.1|WP_038067352.1|1084907_1085108_+|cold-shock-protein
MRGTVKWFDSKKGYGFITMENGEDIFVHWSAIQMDGFKTLRENEPVEFDVQQGTKGPQAVNVRPVR
>NZ_CP007633.1|WP_015919301.1|1083517_1084678_-|type-III-PLP-dependent-enzyme
MEYWVRRALEVTKTPFLLFDLSVVEKKFLEMKAALKGADIYYAVKANSHPRILSLLAKLGCNFDVASKGEIEKLLALGISGKRMSFGNTIKKEEDIAFAYKNGIRLFAVDSEMEIEKVAISAPGSRIFVRIATDGSDADWPLSRKFGTDPDHALDLLFYAAKMKLIPAGVSFHVGSQNLNPESWRKAISVAGKIFKKAMRSGLNLFLLNVGGGFPVQHRKPIPTMEEIGRVIEEAIDENLWFVHGLKLISEPGRYMVGEAGWLVTKVLLKSERNGEKWVYLDAGVFHGLAETMQNFEYEVRVLGKENDELEEYHLAGPTCDSVDVIYDRILLPKTITLNDLVCFVNAGAYTVEYNTYFNGIEPPKMVFVEELTEISLEEKMKASLL
>NZ_CP007633.1|WP_041844185.1|1083122_1083521_+|YjbQ-family-protein
MVKKLTLRSSSRTQFIDITSEVIRVIEESKVKSGICVVFVPHTTAGVTINENADPSVRHDIMTTLGKLVPAAANYTHLEGNADSHIKASLVGSSVTLIIENGRPLLGTWQGIYFCEFDGPRTRSVYVKVMED
>NZ_CP007633.1|WP_015919299.1|1082834_1083110_+|hypothetical-protein
MKFLFWEFGKKKKSRDTARKRLEQIVGQTKRKQMNITEIIPKEVLDKNSDKIKERIASWLSETFNVEKDKIKIDLEEREGHVVIITNVFFK
>NZ_CP007633.1|WP_038067349.1|1082014_1082830_+|septum-site-determining-protein-MinD
MGNVIVVTSGKGGVGKTTVTANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYTLIDVVNGKVSPQEALVRHKVLKNLYLLPASQIATKEMVSPEDMKSIVKELVPNFDYIIIDSPAGIERGFRNAVAPAERILVVTTPEVPAISDADRVIGLLENFGFSDDKIHVVINRFKPHMVKKGEMLTTDDIKHTLSLEIIAVIPDSEEIIIASNTGTPVSLNGNTRISKNFENLARRIRGDRVPLEEDFATVSRGFFDSLKDFFSKFKRG
>NZ_CP007633.1|WP_041844184.1|1079544_1081926_-|AAA-family-ATPase
MIRKLKPEEINNFDLDFMNFRTTEEIPPSEGFIGQKKAREAIEMGIKIREKGYNVFVTGVTGTGRRTFVQMMLQNAAKNLPVPEDWGYVYNFENPYEPRAISFKPGQGRIFKKRLEDLINEVVEVLNKAFESEEFARRISEMEERFSRMRKELWESLEAKARELGFMVQLTPAGVVMLPVVDGKPLSPEAINALPDSAKREIEERQIKLKHLVDGTLYRIRKLDIEFRKSLEEFHKRTALFAIEPLFSEVESEFEGETIRKFLEDIKKDIMENLIDFLKMDAKERKEIYMRKYSLNLIVDNSGLDGAPVIYETNPTYSNLFGKIEYYVRGGFLQTDFTMIRSGSVHRANGGFLILEAERLLSQPYVWYNLKRVLLEGQIGVENLETTLGISNTITLKPDKIPLNLKVVVIGTPYLYELLYELDPDFRKLFKIKAEFDWEIPRNELNVQKYTSFISAVCREKNLPHFDKGAVKRVIWYAMRHAKDSTKLSAVFGDIVNLIVESGELARMDGSTVTTSSHVIRAFDAMEKRKNLLEEKYDEMIKKFDLMIEVTGSKVGQVNGLTVLDLGDYSFGVPVKITAKVYLGRPGVVDIQREADLSGKIHSKAVLILEGFLGSRYAQEFPLSVSASISFEQVYSEVEGDSASLAEALALLSAISKVPIKQGIAVTGSINQHGEVQPVGGIIEKVEGFFRACKSRGFDGEQGVIIPKANAKNLVLKDEIVQAMKKGLFHIWTVETVDDAIEIVTGMKAGKLTRTGKFERGSVNYLVYRELKKMKKLLDGAYEERNKKKKGKK
>NZ_CP007633.1|WP_041844190.1|1090760_1092344_-|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit
MKRDFLGRTLAVIEDLSVEEQMFLYEKTRELKKRWYSGEDVSDFRIRKRNVGIYIVFVEPSTRTKESFINAAKFHAGPNVKVNIFDSEHSSFNKQESYTDTFAMLTGYSDYSIFVVRTRLEGVCRLLERRISEFALRNGIEIPSFINAGDGKHEHPTQELLDEYTFLEQNNFDNSYIHLALVGDLLHGRTVHSKVNGLKIFKNVKVDLVAPEELMMPEHYIERMKKNGFEVRTFSSIEEYLNQKDVAKMWYFTRLQLERMGEDILEKVHLLREAVTFRKEFLEKLPEGVKFYHPLPRHKLYPTIPNFLDSLPLNGWETQARNGYWVRIVLLSMFGGAIEAPFDTSKKAPEKEEDFIIPAPIVHGTKGVQKDGKRGIKPIENGTVIDHIAKGKTPEEIYATIVKIRKILKLYDVDSADGIFRSSDGSFKGYISLPDRYLSKKEIKKLAAISPNTTVNIIKNSSVVEKYRIKLPPTIYGFEELRCKNENCITNPAHGENVSPSFVRDENGRFICEYCETPHSFEEIWSI
>NZ_CP007633.1|WP_041844191.1|1092378_1092888_-|dihydrofolate-reductase
MAKVIFIFAMDLSGKIASSFSGWNSPEDRKHFREVTTEIGNVVMGRITFEEIGKPLPGRLNVVLTKNRKTSSDPSLVFFNGSPKDVVEFLEGKGYREVAVIGGRTVFTQFLREKLVDEMFITIEPYLFGRGVPFFSEFDGFFTLKLLEISRLNEKGTLFLKYSVEHSHR
>NZ_CP007633.1|WP_041844192.1|1092875_1094279_-|NADPH-dependent-glutamate-synthase
MNKKTPMREQSPDVRKRNFNEVALGYTLEEAVAEAQRCLQCPTHPCVSGCPVGIDIPGFIRELREGRLEESYRILKSYNNLPAVCGRVCPQEVQCEFRCVVGKMKDSEPVAIGRLERFVADWAAENLEEKVEESAGQRKEKVAIVGSGPAGLTAAADLAKIGYNVDVFEALHKPGGVLVYGIPEFRLPKRIVEREVNYIEKLGVRIFLNTVVGKTIKVKDLLEEYDAIFIGTGAGTPKFMGIPGTNLNGVYSANEFLTRVNLMKAYLFPDYDTPVRVGKRVAVIGAGNTAMDAARSALRLGAEKVYIVYRRTENEMPARREEYHHALEEGIEFLWLTLPVRYLGDANGNVEAMECVRMELKGVDRSGRPKPVPVEGSNFVLEIDMVIEAIGQGPNRVLLSEFPGLELNERGYIKTDRDTGATSVRGVFAGGDIVTGAATVIEAMGAGKRAAQFIHSYLSGEWDPWQK
>NZ_CP007633.1|WP_041844193.1|1094275_1095109_-|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein
MNEIVVKKRLAFDVFDFWVHSPSISKEAKPGQFVIIRLHEKGERIPLTVADTKPEEGLFRMVVKVVGKTTHELSLRKEGDTILDVVGPLGNPSEIRNYGRVLLVGGGVGIATLYPIAKALKNSGNEVVAVLGARTKDYLIMVDEFKEISEVFLVTDDGSVGMKGVVTDAMDRLLREKSFDVCWAIGPTIMMKFCTLKAMEYGVPIWVSLNPIMVDGTGMCGACRVTVSGQMKFACVDGPEFRGEEVDWDELLKRLAQYREQERISYERFLKTAGETK
>NZ_CP007633.1|WP_041844194.1|1095731_1096352_-|hypothetical-protein
MNEERRKKEELIERIIKEKGEEAFPKLIELLEDEDPEVKEIVAEVFYRFGDRAREFLFNEIQKRREKGFEKNDITNLYIVDILGDLGEKRMKNILYELMEKYDSEEALLVIYEALAKIGEGEVFLPELEYLMFEDSYRKELCEQVAMVLAHIPNERSLKILLRSLKSNEFSEDQKEFFRKAVEMILYKKPELASLIDENERKELGL
>NZ_CP007633.1|WP_041844195.1|1096344_1098906_-|SMC-family-ATPase
MRPERLVAKNFLGLKSVDINFEKGITIIEGPNGAGKSSIFEAISFALFGEGIRYGRNVYDYVNTESPERRAQLIFRFERGGKRYEVLREIESGVRKKHSAVLVEVLEEGKKARQAVKVDDVRKKIEEILGVDSRTFTKTIFLPQGKIDELLKSTPGEISRIISDVFLDEDILKRLEDTLNKKMNELNQETSGYERLLSEIISYLDRYRLEDLKKKLSDLLSEKKRLLDEEEKLRGEEKRLSYLVERYREIVEKKERLKKLLQEKTRLEEEVKQERKIKKAKELKPIFEELRIRESNLKRISDEINRYVERLRKLQTERENASKRLLLYEEDLSRKKEQAEKLRRGLEEAEEILERSRPILEKMIRTLESIRQAEEEVEKLHKDLEEKKRELLRIEGIVEEKKTVLEETKKSLAELKKNHLAWLVYQIASQLNDGDTCPVCGGEYHGKAKAVDFDREQFEEMEKRKSSLESELVILEERKKSLSSAIEETKESLMSREKDLSALKKEKERMEENLNRLGYREGMERTLKERRRAVEELEKECRILSEKIISERTKIEQFDDQIRNIMDEMKAKRRELEDSKAELSHLKEDFMKRLEDAGLNFEEFRTLVNEEPKNAEDRLKAVETEIRLLEEDIEKEKDLSPEILEEHKKILDHLEKIKEKLSELNREEGSIRHILEEVKAKEEKRKELESKLLELKKRLEDFGLLKRLLFRKDEFYSYFTEKVLEAVLKRTNSYLEVLTNGRFEIDFVSGKGFVIYDRGTERMASGLSGGESSLIAISLAMSLAEVASGRLDAFFIDEGFSSLDTENKAKVASVLKELKKLNKVIVLITHDREFSNAFERKLRIEEGVVVSNE
>NZ_CP007633.1|WP_041844196.1|1098895_1100038_-|exonuclease-SbcCD-subunit-D
MEELKILHTADWHFGLTSWSSSKPRDRRAEINEALDRVIEEARKEGVDLFLVAGDLLHNRSNPGVTAMKDVMEYLKKMLQIAPVVVLLGNHDWRGLTAFGDLLQVLSDDLVFLRYPEPVDVVAGRGQKVRILPFPYPEESEDLEAKISRGRDFRQWLEKKLAKLKEAGKEDFAVFVGHFTVEGLEPYAGAEQGREIVINRNLIPFFADYVALGHLHGFHVVQEQPLMIYSGSPIRLDFGEEKDEKGAVLVVVKKGSEPVFRKIDTNPLPLKTLFYRTLDTSARREIKDFCRTFPGYVRITYEEDLLNMAHELLGEIDNVVKVEKRIEKVFQSGVDDVREEISKLDFFELFKEYVKTRVKDHENLIKLFEELLEEVKGNET
>NZ_CP007633.1|WP_015919317.1|1100039_1100426_-|hypothetical-protein
MKKDVFYVVVLTVFALLFTITYFSYRTLNERVEYTEKLVKAYELYIFSDYEKFADYVEKEGLKIEGMDLLKEKKARSLLAEAKDLYKLANYGEALVLFEKVSNLTENEEIKKIVDFYVEECKKKLAGD
>NZ_CP007633.1|WP_041844197.1|1100422_1102786_-|endopeptidase-La
MSKQSKEVEKSFKVLEKYARQQERDIEIPDSLPCIPLRNGLGVFPNTVVPFYVGREKSLIALEEAMEKYNRLLFVVNQIDPSVENPGPEDLYRVGTIVKVLQIMKLPDDTFKVLVEGLERARVEDFISTEPFFLVRLEVLKVKYRKTKKLEALMRSVKDKAIRYFNLTRKFPQETLVTLKEMQDPDRLADFVASILPVPLETKQELLETVHPLHRLEKVLSILVKEIEILEIEEEIEKKVKDRIEKTQREYVLREKLRAIKEELGAEEEVEIRELYEKVEKGDYPEYVKEKAVKEIQRLEKMSPYSAEATVVRTYLDWLLNLPWNVTTEDRIDVKEARKILDRNHYGLEEVKERILEYLVARKFSKNLKAPILCLVGPPGVGKTSLGRTIAEAMGRRFGRMSLGGLRDEAEIKGHRRTYVGAMPGRIIQIIRRVGTKNPVILLDEVDKMGISFQGDPASALLEVLDPEQNKDFVDHYLEIPFDLSQVLFITTANVLHTIPPALRDRMEIIEIPGYSDPEKYHIAKDYIVPRIANQYGLSRIEFTPGAIKKIIREYTKEAGVRNLERIIEKVVRKSLVKKERKHLKIGTKDVEELLGPAVYRAEDVLEEDTVGAVTGLAWTPAGGSVLIVESLLVPGKGNLILTGYMGDVMKESAKIALSVVRKMCGEECRDVFEKNDIHIHVPEGAVPKDGPSAGITITVALYSAVTGKKVKKDVAMTGEITLRGKILPVGGIREKLLAAKRAGIKKVILPERNRPDVEKIPKEYLNGLEIVFCREITDVLKEAVLG
>NZ_CP007633.1|WP_015919320.1|1102739_1103225_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MKKLVFEHLDEEKLKRLAEVMTGALKGGEVVVLSGELGAGKTTFVRGMVRAIGLDESIVRSPTFTLMNVYPGAKTIYHLDLYRVKDPEFLLLDVEDVLESEEGVLVVEWGDLFENFWPEDAIKVKIEVADELSRNVEISIPEEVNYLVEAVKRGGKELQGS

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Crispr_ID: NZ_CP007633_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007633_6

1233629-1233857

Orphan

III-A

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAAGTATTGAAAC	PILER-CR
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CRT

3 spacers

The CRISPR arrays of NZ_CP007633_6

>merge|NZ_CP007633|6|1233629-1233857|PILER-CR,CRT
GTTTCCATACCTCTAAGGAAGTATTGAAACATGTCCTGACCTTCTTCAACCTGCCTTTTGATATCGGTTTCCATACCTCTAAGGAAGTATTGAAACGTTCATCACGAAGGTGTACACTTACCTGATCATGCAGTTTCCATACCTCTAAGGAAGTATTGAAACCTTTATCAGATGATCAAAAGGCTTGAAAAGGAGGATGGTTTCCATACCTCTAAGGAAGTATTGAAAC

>NZ_CP007633|6|6|1233629-1233857|PILER-CR
GTTTCCATACCTCTAAGGAAGTATTGAAACATGTC	CTGACCTTCTTCAACCTGCCTTTTGATATCGGTTTC
CATACCTCTAAGGAAGTATTGAAACGTTCATCACG	AAGGTGTACACTTACCTGATCATGCAGTTTCCATAC
CTCTAAGGAAGTATTGAAACCTTTATCAGATGATC	AAAAGGCTTGAAAAGGAGGATGGTTTCCATACCTCTA
AGGAAGTATTGAAAC

>NZ_CP007633|6|5|1233629-1233857|CRT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ATGTCCTGACCTTCTTCAACCTGCCTTTTGATATCG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GTTCATCACGAAGGTGTACACTTACCTGATCATGCA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CTTTATCAGATGATCAAAAGGCTTGAAAAGGAGGATG
GTTTCCATACCTCTAAGGAAGTATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007633.1\|WP_015919452.1\|1223525_1223750_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|184486
NZ_CP007633.1\|WP_041844243.1\|1225884_1227471_+\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|224378
NZ_CP007633.1\|WP_015919457.1\|1229086_1230292_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|179745
NZ_CP007633.1\|WP_041437623.1\|1223715_1225542_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP007633.1\|WP_015919466.1\|1237331_1237982_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP007633.1\|WP_015919459.1\|1231351_1231834_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP007633.1\|WP_041844247.1\|1239952_1241113_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP007633.1\|WP_041844244.1\|1231855_1232890_-\|transcription-termination-factor-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP007633.1\|WP_041844248.1\|1241113_1242190_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NZ_CP007633.1\|WP_041437852.1\|1242204_1242615_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP007633.1\|WP_038067541.1\|1235788_1236466_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|223331
NZ_CP007633.1\|WP_015919454.1\|1225538_1225868_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
NZ_CP007633.1\|WP_041844246.1\|1238699_1239911_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP007633.1\|WP_015919458.1\|1230288_1231461_+\|competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_CP007633.1\|WP_015919465.1\|1236450_1237335_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP007633.1\|WP_015919461.1\|1232902_1233355_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|184777
NZ_CP007633.1\|WP_041844245.1\|1234770_1235748_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP007633.1\|WP_015919456.1\|1227467_1229084_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP007633.1\|WP_038067410.1\|1242611_1243004_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007633.1\|WP_144399165.1\|1237974_1238685_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|132571

Protein	Function_ID	Function_description	E-value
NZ_CP007633.1\|WP_015919452.1\|1223525_1223750_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|184486	PRK14070, PRK14070, exodeoxyribonuclease VII small subunit; Provisional.	1.80141e-18
NZ_CP007633.1\|WP_041844243.1\|1225884_1227471_+\|DAK2-domain-containing-protein	gnl\|CDD\|224378	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only].	0
NZ_CP007633.1\|WP_015919457.1\|1229086_1230292_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|179745	PRK04135, PRK04135, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP007633.1\|WP_041437623.1\|1223715_1225542_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP007633.1\|WP_015919466.1\|1237331_1237982_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.34193e-86
NZ_CP007633.1\|WP_015919459.1\|1231351_1231834_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.25886e-48
NZ_CP007633.1\|WP_041844247.1\|1239952_1241113_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	1.55864e-170
NZ_CP007633.1\|WP_041844244.1\|1231855_1232890_-\|transcription-termination-factor-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	1.26338e-167
NZ_CP007633.1\|WP_041844248.1\|1241113_1242190_+\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	1.73668e-122
NZ_CP007633.1\|WP_041437852.1\|1242204_1242615_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.93872e-34
NZ_CP007633.1\|WP_038067541.1\|1235788_1236466_+\|diaminopimelate-epimerase	gnl\|CDD\|223331	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism].	4.33652e-55
NZ_CP007633.1\|WP_015919454.1\|1225538_1225868_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	1.22375e-26
NZ_CP007633.1\|WP_041844246.1\|1238699_1239911_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP007633.1\|WP_015919458.1\|1230288_1231461_+\|competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	5.01016e-12
NZ_CP007633.1\|WP_015919465.1\|1236450_1237335_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	1.57335e-166
NZ_CP007633.1\|WP_015919461.1\|1232902_1233355_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|184777	PRK14638, PRK14638, ribosome maturation factor RimP.	2.3087e-89
NZ_CP007633.1\|WP_041844245.1\|1234770_1235748_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	2.42628e-152
NZ_CP007633.1\|WP_015919456.1\|1227467_1229084_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.7156e-18
NZ_CP007633.1\|WP_144399165.1\|1237974_1238685_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	gnl\|CDD\|132571	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.	4.29904e-116

>NZ_CP007633.1|WP_015919461.1|1232902_1233355_-|ribosome-maturation-factor-RimP
MFEEMIVEKVRKEAERIAEKQGLEIFDIQYRRESRGWVLRVVIDNPVGYVSVRDCELFSRELERFLDREDLIEHSYTLEVSSPGLDRPLRGPKDYQRFTGKLAKIITKDGKTFIGRIESFVDGIVTISDEKGKHEIDIEDVRKANLEIEF
>NZ_CP007633.1|WP_041844244.1|1231855_1232890_-|transcription-termination-factor-NusA
MNIGLLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGSSKNVEVVIDRNTGNIKVYQLLEVVENVEDPTTQISLEEAKKLDPTAEIGSIIRKELDVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVTSDWADIRIGKLETRLPKKEWIPGEEIKPGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGLMKLEIPEIENGIVEIKAIAREPGVRTKVAVTSNNPNVDPIGACIGEGGSRIAAILRELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENRAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPIMNL
>NZ_CP007633.1|WP_015919459.1|1231351_1231834_-|transcriptional-repressor
MYEELRNELKKRKYRITAQREMILKIFLESKGRHLGVDEVYRELLNRNVRVSKATVYRAVELLVELGFLRKLNFGEGLYRYELIDRSTRESHQHVICQKCGKIVEINSEQVKKIVSDISEKTGYVIKWHDLKFYGLCPECQKEESKAPESGQRTEISEEG
>NZ_CP007633.1|WP_015919458.1|1230288_1231461_+|competence-protein
MILIFFSLCLGALLGALFRFPWYVFFPAAIPLWRKNKEISIAVLFILSGAFLYSLGTLPPGNYELVGLVEGSRVTRVKVFQGEWKKVRPIRIRTSKDGFIYAVGYYDGSIFHPSYLKELEKPSLRRLREEFSKEVRGTAFSLLFGEKDNAVYRSGLGHFFAVSGLHVGIAFSLYTTLISFFTWRRMYQELVALLLLIPYVLSVNTPSVLRAYLTILLWKVLRTLGFKTTPSYITATVGSLMIVLDPTVLFTPSFLLSFFVTLSILNSKNIFELVVKAYLASLPFLCLFFGETNVSALLFSIPMSFAVIPVTWVSHLSFLLFLLGLKTPSMVAADVANIVSFPVDVLVRLSNMMPIIPLPKFLFFVLIPVPLILLFDIRGIIRRTSGRAIL
>NZ_CP007633.1|WP_015919457.1|1229086_1230292_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MLDKQKFVSKLVTTNDTKIVLLVMDGLGDIPVNGKTPLQAASTPNLDSLAKESDLGQTVPVLPGITPGSGPGHLSLFGYDPIKYQIGRGILEALGIGVEVGEKDVVARANFATWDGNVVLDRRAGRPATEESAKVVQLLSEKIKKIEDVEITFYPGKEHRFVVKFTGEGLGDRVTDADPQKEGHPMVWAEGLDEPSKKTARIANELIRKIAEVLKDNPKINFALIRGFSKYPDLPKFPEIYKLRAGAIATYPMYRGLAKLVGMEIIETGQTVEDEINTLKEKWNDFDFFYVHVKKTDSYGEDGKFDEKVKVIEEVDRVIPEILALKPDVLVITGDHSTPVPLKAHSWHPVPLLIWSRYTRRGLSQAFNEFECARGTLGTIHASDVMTLALAYAGRLEKFGA
>NZ_CP007633.1|WP_015919456.1|1227467_1229084_+|tetratricopeptide-repeat-protein
MRGENIKAIVYLPLDPDKAKQNNLPVKLPVLAEDLPRIVEEDRIPLDVVLRGLEAQYEVSKDEYYRSYYVFFLYEKFKELLREQRFDEAEKILEKAREVQYDYRYHFYRGLLLKHRGNLGEAEVEMRIATSMKEDFAPAYFELANILKEKGEIEDSLLFYEKAHETNRDFLLPLLKKGDLLLEEGRFEEALEEYKRILEKDPNFTEVYERLGVIYNQLQRFKEAEKFFRKALEAERKDHVEFNLSYTLIKLGRLFEALGILKRLYEKTPDDPMLANEYGLLLKTLGLYEEALEVFEEAYSRHRDEEIVKYNYATILLHFDREKAISVLSEITGELKERAEHMIALAESKVKIPTFEEFEWLRDYFDEEGVIDVVSLAEDLASSNEEVQKRIDALREGQFPFYDTTIDTSEMIETMMGIIFESPDIFKMEENVVKFTSAFFGSSIMIASSLVLVRIVQHLLVFKDLLMDDLLREIVAETQDINWRFALRIARFRHADKFDFEKLSDLVVALLQSLEQGVPVADDDRLKYVMEKLRIKEG
>NZ_CP007633.1|WP_041844243.1|1225884_1227471_+|DAK2-domain-containing-protein
MKKITGRFLKTIIKKATENLLKHKDEINALNVFPVPDGDTGSNMCSTMLEACKYIDNLKSDDLSEVWKAIKEGALMGARGNSGVILSQILRGLADASPENYITPGDFIKMISNARKVAYSAVMRPVEGTMLTVVRELDEKLKGRSFETFEELFDQIVEMIKDTVNRTPSMLSKLREAGVVDAGAKGLYYLFEGMRDAIKGDIEVNLEQVEQASVEDLKRMALEEITNQYCTEVAVRRERVFEKSELESFLNEIGDSVVLVEQDDIFRLHVHTNHPGQVLEKVLDFGEIIKVKVDNMKLQHEHIISAQVEKEIGVVAVSPGKGISEILKSLGVDEIVPGGQTMNPSFADLKAAVDKTHAKVVFLFPNNANVLLTAKQVAESVDDKRVIVVQTSHVQECVAAMVEYDPDEDPEELKRRFEEAINQCVPISITRAVRDSRYGKRRIRKGEYLVFVRKELLAHGFNLVKALKDVLEKENAREKEILTVFLGDNYRKAELEKIQNLIGEEFPNLDLEIHEGGQPHYPFLMLLQ
>NZ_CP007633.1|WP_015919454.1|1225538_1225868_+|Asp23/Gls24-family-envelope-stress-response-protein
MKIMLEHGELEITVEALKKIVYLATVESYGTVGIGESRSFFERIFGGDKGIKIEELEDSSLNVDVYIEVEYGVNIKEVARNIADNVAHKLKTLAGCENLNITVHVVGIK
>NZ_CP007633.1|WP_041437623.1|1223715_1225542_+|1-deoxy-D-xylulose-5-phosphate-synthase
MMLDEIRKMSHEELKSLAEEIRQRIVEVVLKNGGHLASNLGTVELTLALYRVFDPREDAVIWDTGHQTYTHKILTGRDEQFHTIRTFGGLSGFVTRRESPLDWFGTGHAGTSIAAALGFEKAFEFLKEKRHVVVVIGDGALTSGMALEALNQLKNLNSKIKIILNDNGMSISQNVGGLAYHLSRLRTNPIYLKGKKALKKVLEKTEIGFELEEEMRYLRDGLKGLIQGTNFFEALGLKYFGPFDGHDVELLERVLKRVKEYDYPSVVHVVTRKGRGFKAAEEDPTTYHSASPVGKPKRLSYSELLGYTLSKIAESDEKIVAITAAMADGTGLSIFQKNHPERFFDLGITEQSCVTFGAALGLQGMKPVVAIYSTFLQRAFDQIVHDVALQNAPVLFAIDRSGVVGEDGPTHHGLFDINYLLPIPNMKIVSPSSPQEFVNVLYTVLANLDGPVAVRYPKESFEADLNSLFENMREIDLGWKVVREGKDAAVIVTGTLLKEVLRIPLDVTVINALTVKPLDTHVLREVAQNHRLIFTVEEAMKIGGFGSYVAQKLWEMGWKGRVVNIGVNDHFVTHGSRKELLEMLGLDSKGLSKTMLTYIKVRSEEGKA
>NZ_CP007633.1|WP_015919452.1|1223525_1223750_+|exodeoxyribonuclease-VII-small-subunit
MDFEEMMKELEEIVNRLESEDLSLEESIELFQRGVELYKKCREILQKEQLKIIDVLKELEGDEDDAGRNQEDES
>NZ_CP007633.1|WP_041844245.1|1234770_1235748_+|aspartate-semialdehyde-dehydrogenase
MKVGVVGATGEVGRAMVKVLEEFNVPVTELRLFASERSVGKEIEFRGEKVKVELLTEEAMKWDCDYFLFSAGASVSRKFAPIAAENGVTVIDNSSAFRMEKDIPLVVPEVNAHLLKGYTGIIANPNCSTIQMILSIYKLHEVYGIEEIFVATYQSVSGAGHKGIEELLSQERGENVVRVFPKPIHRNVIPLIGDVQDNLFTQEEMKMINETRKILNDYSIRVYPTTVRVPVLYGHSEAVMVRLKRPFESLEKVKEIIASGEDVVVTDDLVTAVDVAGKNETYVCRLRKGDERSILFWNVADNIRVGAATNAVRILLKHAKMNGRM
>NZ_CP007633.1|WP_038067541.1|1235788_1236466_+|diaminopimelate-epimerase
MVDNTEKKISENEKPDFVRNHVGDLDGVIFVEKVGEKFFMDYYNRDGSMATFCGNGARAFSQYLIDRGWVKQRKFTFLSRAGEIKVFLDDGIWVRMPAVSEVKELEVDGYRGHFVVVGVPHFILEVKNVDEVDVEKLGRLLRHKTNANVDFYEVAQGFLKVRTYERGVERETKACGTGVTAVFFVHHSRTGSKEMKVLVPGGTLFLREENGEIYLKGDVRRCSEE
>NZ_CP007633.1|WP_015919465.1|1236450_1237335_+|4-hydroxy-tetrahydrodipicolinate-synthase
MFRGVGTAIVTPFKNGELDLEAYERLVRYQLDGGVSALIVLGTTGEAPTVNDDERERLVSKTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGADGVLIVTPYYNKPTQEGLYQHYKYISERTDLKIIVYNVPGRTGVNVLPETAARIASDLKNVVGIKEANGDIDQIDRTVTLTKSARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMSDLCAEFFSGNIEKAREIHRKLRPLMKALFVETNPIPVKAALSLMGYVENELRLPLVPASEKTVELLKGVLRESGLL
>NZ_CP007633.1|WP_015919466.1|1237331_1237982_+|4-hydroxy-tetrahydrodipicolinate-reductase
MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGKEIKDSPDVIVDFSSADALPETVDLCRKYKSALVLGTTALKEEHFEMLRELSKEVPVVQSYNFSIGINVLKRFLSELSKVLSDWDVEIVEAHHRFKKDAPSGTAILLKNALGKEVPIHSLRIGGIPGDHVIVFGNVGETIEIKHRAISRTVFAIGALKAAEFLVGREPGFYSFEEIVFGGE
>NZ_CP007633.1|WP_144399165.1|1237974_1238685_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase
MNEVDAREIIEMIAKSKKKTPIVAYIKGKLDGIDFSKFKFFGNDQFGVLFGEYEDFRELLEKYGEKIEDYHLEVKARNSALPLADITKYRARIEPGAIIRDMVEIGEGAVIMMGAVINVGAVIGEGTMIDMNAVVGGRAIIGKKCHIGAGAVIAGVIEPPSAKPVVIEDEVVVGANAVILEGVTVGKGAVVAAGAVVTKDVPPYTVVAGVPARVIKQIDEKTKEKTRIVDELRNLE
>NZ_CP007633.1|WP_041844246.1|1238699_1239911_+|aspartate-kinase
MKLVVQKYGGSSVATPERIKNVAMRIKKKVEEGFKVVVVVSAMGKTTDELIKLAKEVSPKPDARELDMLLATGEQVSAALLSMALKDLGVKAKSLNAFQVRIKTTPHHTSARIMDIDDSVIMENLKEHDALVVTGFQGVNEKGDLTTLGRGGSDTSAVALAAKLRVPCEIYSDVDGIYTCDPRLIPGAKKLKYITYDEALELTALGAKVLHSRSVEIAKKYRIPVYCASSFVEEEGTMVVERLPEWLEEPVVTGATISHGQIKVSISFLPKEAEYITAIFEEVGKRSLNVDMISLVPSNGKVFLSFTILEDHKDDLDEALRNALKNVEGWKSSYEEGFAKLSIVGVGMRTSPGVAARFFSALKRVGVTPELVTTSEIKISCLVPEKDAEKALKAVVDEFDLAE
>NZ_CP007633.1|WP_041844247.1|1239952_1241113_+|diaminopimelate-decarboxylase
MEALKKAAEIHGTPLYVYFEETIRERAQRVKEVFQGINLLPTFAVKANNNPNLLAILKEEGFGMDVVTKGELFAARLAGVDPFLIVWNGNGKSKEEMLHFLKEGVRTINVDSFEEMEMWESLSPEDVSFFVRVNPEVDARTHPHISTGLKKHKFGIPLNMLDSFMKRFKGMNIKGLHVHIGSQITKVDPFLEAYEKVVEASRRYGFEEINIGGGWGIDYQGEELNVQEYREKVVPLLDGFKRVFVEIGRYIIAPAGFLVLKVILVKRGENKVFVVVDGGMNTLIRPALYSAHHRIFVYGKEGSDFKADVVGPLCESGDVIAYDRNLPAVEPGDFLFVENAGAYGYTMANNYNSTSKPAEVLVKKDGELVLIRRRENIMDIFKDVVM
>NZ_CP007633.1|WP_041844248.1|1241113_1242190_+|amidohydrolase
MDEIELRHLLHMNPEPSFKEFKTQEILKSAIQKIGYGKIMEVAGTGLVVEKKETEGPYVVLRAEMDALPIKEETGWEFASRNDYMHACGHDFHMSALFGAMKRLKTVRKNFLFVFQPAEETGGGAKEVVEFLRKNYTIKAAVGFHVTDEYDVGTVASRAGVLFASATEFDVYFKGVPAHIAFAEKGKDALKVAVSFLHWLYGRKWDALVGVGKIVGGRVRNVVPSEVKIEGTIRAKSLKIAEEILSEMKNQLLSLKDSSGVDFSLEKGSVYPEVKVNADLLEILKKTCERLNLRFIECEMKKTGEDFGYFTQVFPSLSFWFGVGEGEKRVGLHHPCFLPKDEYIPLASELLAFLAEAI
>NZ_CP007633.1|WP_041437852.1|1242204_1242615_+|transcriptional-repressor
MNLEEIVEQLKAKKIKLTTQRMEIIKFVSKMEKGHFEAKELFSVLSKKIPSLSIATLYSTLYLLVDLGVIYSFSDGQKTIFDFNPAPHGHFVCRICGKIEDIEIKKLDLEKIRGKREKIEIVIRGVCEDCLKRVKD
>NZ_CP007633.1|WP_038067410.1|1242611_1243004_+|hypothetical-protein
MRFFTQLLSILLIVVGTIGFIGWVAFYFLEPYISTFLGVSVPKNFLAVLLSLFLPFLFSGISLNYYTSSGKKWLAVLGFLLLFPSLVAQLYGLYVFGNLVSRLIGVYVLFLLFTVVLLAFFLTVIRRDES

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Crispr_ID: NZ_CP007633_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007633_7

1422791-1423488

Orphan

III-A

Consensus_repeat	Method
GTTTCCATACCTCAAAGGAAGTATTGAAAC	PILER-CR
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CRT

10 spacers

The CRISPR arrays of NZ_CP007633_7

>merge|NZ_CP007633|7|1422791-1423488|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATACTTCCTTTGAGGTATGGAAACGGCACTAACTGACCTACTTCCCAGTGCTCGTGTACAAGTTTCAATACTTCCTTTGAGGTATGGAAACTCCTTACGTTGACTTTTTCCCAGAGCTCTTTGTCAAGTTTCAATACTTCCTTTGAGGTATGGAAACGAGACATTCAGAAATTTCAGTATTTCAAGATCAAAATGTTTCAATACTTCCTTTGAGGTATGGAAACATCTCGATGCTAGAATTGTTAAGACGCATATGCAAATTTAGTTTCAATACTTCCTTTGAGGTATGGAAACTGACCGCCAAAGACGTCGACCATCCGGACTGAAAACGTTTCAATACTTCCTTTGAGGTATGGAAACCCATTTCTGATCTCCTTCACAAACTCAACCTTCACCAGTTTCAATACTTCCTTTGAGGTATGGAAACTAAAGGATTTTGATGGAGACGAAAGAATTATTCAGTGTTTCAATACTTCCTTTGAGGTATGGAAACCAATAATTGCATTCACCACAATCTTCTTGAGGTTCTTGGTTTCAATACTTCCTTTGAGGTATGGAAACCCTACATCGCACAGGCAACGATAGAAGGAGCACACAGTTTCAATACTTCCTTTGAGGTATGGAAACTGAATATACCAGAGTATCAGGAGGTCGTCGTATTCGTTTCAATACTTCCTTTGAGGTATGGAAAC

>NZ_CP007633|7|7|1422791-1423488|PILER-CR
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GGCACTAACTGACCTACTTCCCAGTGCTCGTGTACAA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TCCTTACGTTGACTTTTTCCCAGAGCTCTTTGTCAA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GAGACATTCAGAAATTTCAGTATTTCAAGATCAAAAT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	ATCTCGATGCTAGAATTGTTAAGACGCATATGCAAATTTA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TGACCGCCAAAGACGTCGACCATCCGGACTGAAAAC
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCATTTCTGATCTCCTTCACAAACTCAACCTTCACCA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TAAAGGATTTTGATGGAGACGAAAGAATTATTCAGT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CAATAATTGCATTCACCACAATCTTCTTGAGGTTCTTG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCTACATCGCACAGGCAACGATAGAAGGAGCACACA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TGAATATACCAGAGTATCAGGAGGTCGTCGTATTC
GTTTCAATACTTCCTTTGAGGTATGGAAAC

>NZ_CP007633|7|6|1422791-1423488|CRISPRCasFinder
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GGCACTAACTGACCTACTTCCCAGTGCTCGTGTACAA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TCCTTACGTTGACTTTTTCCCAGAGCTCTTTGTCAA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GAGACATTCAGAAATTTCAGTATTTCAAGATCAAAAT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	ATCTCGATGCTAGAATTGTTAAGACGCATATGCAAATTTA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TGACCGCCAAAGACGTCGACCATCCGGACTGAAAAC
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCATTTCTGATCTCCTTCACAAACTCAACCTTCACCA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TAAAGGATTTTGATGGAGACGAAAGAATTATTCAGT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CAATAATTGCATTCACCACAATCTTCTTGAGGTTCTTG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCTACATCGCACAGGCAACGATAGAAGGAGCACACA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TGAATATACCAGAGTATCAGGAGGTCGTCGTATTC
GTTTCAATACTTCCTTTGAGGTATGGAAAC

>NZ_CP007633|7|6|1422791-1423488|CRT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GGCACTAACTGACCTACTTCCCAGTGCTCGTGTACAA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TCCTTACGTTGACTTTTTCCCAGAGCTCTTTGTCAA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	GAGACATTCAGAAATTTCAGTATTTCAAGATCAAAAT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	ATCTCGATGCTAGAATTGTTAAGACGCATATGCAAATTTA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TGACCGCCAAAGACGTCGACCATCCGGACTGAAAAC
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCATTTCTGATCTCCTTCACAAACTCAACCTTCACCA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TAAAGGATTTTGATGGAGACGAAAGAATTATTCAGT
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CAATAATTGCATTCACCACAATCTTCTTGAGGTTCTTG
GTTTCAATACTTCCTTTGAGGTATGGAAAC	CCTACATCGCACAGGCAACGATAGAAGGAGCACACA
GTTTCAATACTTCCTTTGAGGTATGGAAAC	TGAATATACCAGAGTATCAGGAGGTCGTCGTATTC
GTTTCAATACTTCCTTTGAGGTATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007633.1\|WP_015919681.1\|1425587_1426508_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240628
NZ_CP007633.1\|WP_041844336.1\|1428430_1429132_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|173302
NZ_CP007633.1\|WP_162828739.1\|1425463_1425607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007633.1\|WP_038067659.1\|1429124_1429937_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP007633.1\|WP_041844329.1\|1412688_1413126_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007633.1\|WP_041844333.1\|1420826_1422056_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP007633.1\|WP_038067649.1\|1415405_1416560_-\|acetylornithine-transaminase	unknown	unknown	gnl\|CDD\|235056
NZ_CP007633.1\|WP_015919673.1\|1418617_1419637_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|273832
NZ_CP007633.1\|WP_041844331.1\|1414298_1415123_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP007633.1\|WP_015919672.1\|1417407_1418601_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|376687
NZ_CP007633.1\|WP_015919683.1\|1427876_1428434_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP007633.1\|WP_041844330.1\|1413500_1414046_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_CP007633.1\|WP_041844334.1\|1424335_1425313_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213232
NZ_CP007633.1\|WP_041844335.1\|1426513_1427668_-\|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223153
NZ_CP007633.1\|WP_168098964.1\|1415206_1415386_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238698
NZ_CP007633.1\|WP_015919678.1\|1423560_1424331_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130314
NZ_CP007633.1\|WP_041844337.1\|1429933_1432528_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP007633.1\|WP_041844332.1\|1419633_1420830_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|223243
NZ_CP007633.1\|WP_015919671.1\|1416562_1417411_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP007633.1\|WP_041844338.1\|1432534_1433587_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007633.1\|WP_015919681.1\|1425587_1426508_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240628	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains. Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	3.70763e-155
NZ_CP007633.1\|WP_041844336.1\|1428430_1429132_+\|isoprenyl-transferase	gnl\|CDD\|173302	PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional.	3.35373e-158
NZ_CP007633.1\|WP_041844337.1\|1429933_1432528_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP007633.1\|WP_038067659.1\|1429124_1429937_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.62463e-59
NZ_CP007633.1\|WP_041844333.1\|1420826_1422056_-\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP007633.1\|WP_038067649.1\|1415405_1416560_-\|acetylornithine-transaminase	gnl\|CDD\|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	0
NZ_CP007633.1\|WP_015919673.1\|1418617_1419637_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|273832	TIGR01850, N-acetyl-gamma-glutamyl-phosphate_reductase, N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. [Amino acid biosynthesis, Glutamate family].	0
NZ_CP007633.1\|WP_041844331.1\|1414298_1415123_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	5.64107e-06
NZ_CP007633.1\|WP_015919672.1\|1417407_1418601_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|376687	pfam01960, ArgJ, ArgJ family. Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in arginine biosynthesis.	0
NZ_CP007633.1\|WP_015919683.1\|1427876_1428434_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	3.92456e-92
NZ_CP007633.1\|WP_041844330.1\|1413500_1414046_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	1.01976e-05
NZ_CP007633.1\|WP_168098964.1\|1415206_1415386_+\|hypothetical-protein	gnl\|CDD\|238698	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.	0.000400487
NZ_CP007633.1\|WP_041844335.1\|1426513_1427668_-\|alanine--glyoxylate-aminotransferase-family-protein	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	3.32093e-178
NZ_CP007633.1\|WP_041844334.1\|1424335_1425313_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213232	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein. DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.82869e-150
NZ_CP007633.1\|WP_015919678.1\|1423560_1424331_-\|ABC-transporter-permease	gnl\|CDD\|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	2.49104e-88
NZ_CP007633.1\|WP_041844332.1\|1419633_1420830_-\|argininosuccinate-lyase	gnl\|CDD\|223243	COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism].	1.97175e-165
NZ_CP007633.1\|WP_015919671.1\|1416562_1417411_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.87574e-161

>NZ_CP007633.1|WP_041844333.1|1420826_1422056_-|argininosuccinate-synthase
MKEKVVLAYSGGLDTSVILKWLCEKGFEVIAYVANVGQKDDFEAIKEKALKTGASKVYIEDLRREFVTNYIFTALLGNALYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALNPNLKVISPWKDPEFLSRFKGRTDLINYAREKGIPVKVSKKRPYSEDENLMHISHEAGKLEDPMYIPDEDVFTWTVSPKEAPDEETLLEIHFEKGVPVKVVNLKDGTEKTDPLELFEYLNEIGAKNGVGRLDMVENRFIGIKSRGVYETPGATILWIAHRDLEGITMDKEVMHLRDMLAPKFSELIYNGFWFSPEMEFLLAAFKKSQENVTGKVIVSVYKGNVMPVARYSPCSLYNPELSSMDVEGGFDATDSKGFINIHALRLKVYRLTKKGYEK
>NZ_CP007633.1|WP_041844332.1|1419633_1420830_-|argininosuccinate-lyase
MSEKLWEKGYTVDEEVEKFTVGDDYIVDMRIIKYDIKASIVHSKMLQRTGLLTQEEQKKIEEALNELLHLVEEGKFQIKPEDEDCHTAIENFLVKKLGETGKKIHTARSRNDQVLTALRLMYKDELKKIKDLVVELQKSLDGFIERFGQIKFAGFTHTRKAMPTDFATWAGALKDALQDDLKLLETVYDIIDQSPLGTGAGYGVPIEVDREFTAKELGFSRVQWNPIYTQNSRGKFEYLLLHVLSQISYDLNRFASDIIFFSLPEIGFLKLPKELCTGSSIMPHKINPDPLELVRAYHHFVVSRMVMAVSLPSNLILGYHRDLQLLKKPVIESIDVVKNILRIMKIIFDRIEVDREKSEDSITEEVLATHRVYELVKKGIPFRDAYRMVAEKYGREKD
>NZ_CP007633.1|WP_015919673.1|1418617_1419637_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MIRVGIVGATGYTGIELFRLLKKHPSAKIVYMSSRTYAGKKMMEVYPSTLEEAVLEDFDSRKISESCDVVFTALPAGVSYRLAMELQNVKIIDLGADFRFDDPNTYAEWYGNKLEDYNSTERVYGLPELYRDSIKNARIVGNPGCYPTSVILALTPALKSGIVEVDTIVVDSKSGVSGAGRKETLDYTFSEVNENLRPYNVAKHRHVPEMEQELKKIAGKDVKVIFTPHLVPMTRGILSTIYVKTNASLEKIHRIYQEFYAGEPFVHVLPLGVFPSTKWCYGSNHVFIGMQLEERTGTLILMSAIDNLVKGASGQAIQNMNIMFDLKETEGLESLPIYP
>NZ_CP007633.1|WP_015919672.1|1417407_1418601_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MFVPRGFSYAGVHCRIKRKRKDLGIIFSEVPCTAAGVFTTNVVKAAPVIYDMEILGKNPSGIRAITVNSGVANACTGEQGMINARRMAEKTAKELNIPVESVLVSSTGVIGVQLPMEKVESGIEEAVKNLSKDPVPFAEAIMTTDTKIKIHSKKVTIEGKEITVLGIAKGSGMIHPNMATMLSFITTDANVSEDALKKLLKISVDDSYNMIDVDGDTSTNDMVIILANGLAGNAPIQEETDGFWKLYEAVHEVNQVLAEKIVEDGEGATKVIEVEVRNAPDRNSARLIARAIVSSNLVKTAIYGEDANWGRVIAAAGYSGAQFDPDRLDLFFESAAGRIKVAENGQGVDFDEDTAKKILSEKKVKIILDMKQGKELARAWGCDLTEKYVEINGRYRT
>NZ_CP007633.1|WP_015919671.1|1416562_1417411_-|acetylglutamate-kinase
MRIDTVNVLLEALPYIKEFYGKTFVIKFGGSAMKEEKAKKAFIQDIILLKYTGIKPVIVHGGGPAISQMMKELGIEPVFKNGHRVTDERTMEIVEMVLVGKINKEIVMNINLHGGRAVGICGKDSKLIVAEKETKYGDLGFVGKVKQVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKDGKLLSTLTPEEAENLIKDGVVTGGMIPKVECAISAVREGVGAVHIINGGLEHAILLEIFSRKGIGTMIKESEG
>NZ_CP007633.1|WP_038067649.1|1415405_1416560_-|acetylornithine-transaminase
MFLMNTYNRFPVTLVYGKGSWVYDINGKAYLDFTSGIAVNVLGHSHPELVKAIKDQAEKLIHCSNLYWNLPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKMKSEKKFKILSARNSFHGRTLGSLTATGQPKYQKPFEPLVPGFDYFEFNNIEDLRKKVSDEVCAIFLEPIQGESGIIPATKEFLEEARRLCDEYDILLVFDEVQCGMGRTGKLFAYQKYGVTPDILTVAKGLGGGVPIGAVVVNEKANVLEPGDHGTTFGGNPLACRAGVTVMKELTKEGFLDEVDRKGRYLLEKLSRMKEKYSAVEDVRGMGLMIGIQFSGVENKNVAMKCFEKGLLVVPAGNNTVRLLPPLTVEYGEIDTALRILEEVLQEI
>NZ_CP007633.1|WP_168098964.1|1415206_1415386_+|hypothetical-protein
MMPYIYRCTKCGAIYYSATSIEYQLNKNCEKCGGELEQLGEEGELMKKEEEKEKEDRKK
>NZ_CP007633.1|WP_041844331.1|1414298_1415123_+|DMT-family-transporter
MRPAFYLLLSVLIASFSGVLAKISTLSPQTIAFYRVFIASFLFLLIAKKPRFFPLQDEMFSALAGFFLAMHFRFWIAAFDYTTVAGAVIPLMLQPVVTGFLSYLLYREIPTLQQFVTGSIVVIGVLISALGNEKFSDATRGDWLAITGTLFLCGYLVLGRKLNQRMGSLAFSLRTHAVASIVLFALSFPSFEIVPLREWFILLALGAGCSFLGYLFINISLKNFPSSVVSMALVGETSLSMLWAYLLLGEVLGVFQVAGFVISTAGLVLFLLKA
>NZ_CP007633.1|WP_041844330.1|1413500_1414046_+|YkgJ-family-cysteine-cluster-protein
MKRLEELAIKVMELYRELENIQRGLPSCNGCRECCDTPSINIEATILEFLPLAIHLLKEGSIERWLKILETTDESGRCVLFDPRSEQGGCSYHSFRPLVCRLFSGSYILRKGRPEVWACRYLKPQLTNLSESLPECQKVHSKLLSIDFFLAQEKYPINIAFKKALEYTCVSLFPELRYKGA
>NZ_CP007633.1|WP_041844329.1|1412688_1413126_-|hypothetical-protein
MRRLLLFFVAVSVALALVSGCVASGGSSSSSIPNIVGRWESTSTFPIDINYDGTPDTYGKYVMIVENQNGSTFTGLFGGVELSSGIQFFLPMTGTITSGGNIVITVTLTDPTTGQTVTATSQGVYASGRITIIGENQTIDLVKVQ
>NZ_CP007633.1|WP_015919678.1|1423560_1424331_-|ABC-transporter-permease
MAAFVTMVYRQLIRFVRSRSRVIGMIINPLIWLVFFGLGWSKVFDNPWARMMFGGVDYLTYLAPGIFAMTIFNMSFISGVSLIWDKQFGFFKEVLVAPSSRRLSVMGRIIGDGLVTVLQGFIILFFTYFLAENLKISGLIPALIVGFLMSVTIASFGIALALKMESTEGFQMIMMTLMMPLIFLSGAMYPIDSMPNWMKAIAYINPLTYAVDASRGYLVGSHVMKFSFGMDWGILSILMVVGLLLATESFERARIS
>NZ_CP007633.1|WP_041844334.1|1424335_1425313_-|ATP-binding-cassette-domain-containing-protein
MEDVIVVENLVKKFGDFEAVKGISFSVKKGEIFAFLGPNGAGKTTTIHILTTLLKPTDGKAWVAGHDVLKEPREVRKKIGIVFQDQSIDRELTAYENMYIHGRIYGYGGEKLKKRILELLEFVELLEFKDKPVKTFSGGMTRRLEIARSLIHEPEILFLDEPTIGLDPHTRAHIWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGSPDELKQMVGKEIIYVKFSDPVDCLDGEFIKACKKLSDGRLELNVENSSRAIPKIFELAQQKGLKIEEITYHKPTLNDVFLHLTGRELREEGPENFFKAVARMRMRR
>NZ_CP007633.1|WP_162828739.1|1425463_1425607_+|hypothetical-protein
MERIRDFFILIFCVVLFLYEITSLSMKVIFKRKKSRETAPGLRSQAL
>NZ_CP007633.1|WP_015919681.1|1425587_1426508_-|2-hydroxyacid-dehydrogenase
MAKYRVHVNDPLDEEATKLLMEKEELTVTSRHLEKEELLKTISEVDVLVVRSATKVTSDIIEAGKNLKIIARAGIGLDNIDVQKAKEKGIKILNTPGASAPSVAELAIGLMLACARHIAKATISLKEGKWEKKILKGKELLGKTLGLIGFGNIGQEVARRALGFGMRVIAYDPARPKTDLPVEYVDLDTLLKESDFISLHVPLIESTKHMINKDTISKMKDGVIIVNTSRGGTIDEEALYEALVSGKVYAAGLDVFEVEPPSDELRRKLLSLDNVVATPHIGASTAEAQKRVGKELVEKIFRELGI
>NZ_CP007633.1|WP_041844335.1|1426513_1427668_-|alanine--glyoxylate-aminotransferase-family-protein
MGKFLKKHYIMAPGPTPVPNDILTEGAKETIHHRTPQFVSIMEETLEDAKYLFQTKNNVYAFASTGTGAMEAAVANLVSPGDKVIVVVAGKFGERWKELCQSYGANIVEISLEWGEAVTPEQIEDTLNRNPDAKVVFTTYSETSTGTVIDLEGIARVTREKNVVLVTDAVSALGAEPLKMDEWGVDVVVTGSQKGLMLPPGLALISLNDKAWELVEKSKSPRYYFDLRAYRKSYPDNPYTPAVNMIYMLRKSLKMIKEEGIENVWERHRVLGEATRSAVKALGLELLSKRPGNVVTAVKVPAGIDGKQIPKIMRDKYGVTIAGGQAKLKGKIFRIAHLGYMSPFDTITAIAALEFTLKELGYDLELGAGVKAAETIFAKEFIGE
>NZ_CP007633.1|WP_015919683.1|1427876_1428434_+|ribosome-recycling-factor
MVNPLIKEAKEKMKKTLEKIEDELKKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTLVIKPWDRSVLSLIEKAINASDLGLNPVNDGNVIRLVFPTPTTEQREKWVKKAKEIVEEGKIAIRNIRREIMKKIKEDQKEGNIPEDDARRLENEVQKLTDEFIEKLDEVFEIKKKEIMEF
>NZ_CP007633.1|WP_041844336.1|1428430_1429132_+|isoprenyl-transferase
MRIPQHVAIIMDGNGRWAKKRGLPRIKGHERGAHVLHNTVKWSLELGIKYLTAYSFSTENWKRPKEEVEFLMDLFVQMIDREMDLLRREKVRVRILGRKEGLPESVLRKWNEVEEKTASFDRMTLVIAFNYGGRREILDAIEKILRDVEKEKKIVLNEETFKNYLYLPDVPDPDLIIRTSGELRLSNFLIWQSAYSELYFTRKLWPDFTKRDFLRAIESYSRRERRFGGLGDG
>NZ_CP007633.1|WP_038067659.1|1429124_1429937_+|phosphatidate-cytidylyltransferase
MDDLKTRVITASVVAPFVVLCFVSYESLVGLVSAIVILAGYELITLELKERDARFFYVILLAVYPVLYGVAFKEPVQPLSLVFIIGVVFSLATDKDPSQVFRTVSVFSIALVYVSFFLSFFLPIYSEFGAANALLVLTSTWVFDSFAYFTGLKFGKTRISPHYSPRKSLEGVIGGFLGVLIYTFLYRLIVSNILSVNVIDYRTFLPFASVVAVMDTFGDIFESALKRHYRVKDSGKTLPGHGGMLDRIDGLLFVTPVSYIVFKIFEGVVR
>NZ_CP007633.1|WP_041844337.1|1429933_1432528_+|alanine--tRNA-ligase
MRYMTSEEIREAFLRFFEKKGHKILPSASLIPDDPQLLFTVAGMVPFKPIFWGKVEPVYTRIATCQKCLRTVDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRLGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMMQGVYSNFDTDLFQPIIKAIEELTGVSYKTDEEKDISIRIIADHIRAITFLISEGVFPSNEGRGYVLRRIIRRAMRHGILLGMNEPFLYKVVDAVVEKMGKVYPEIVRGKDMVKEVLSSEENRFLKTLEQGMRIFDELVEKKGKIDSQDAFRLYDTYGLPLELTLEIAKEKGVEIDVKDFDRYMKEQQRKSREAMGKVEFAKRYEYLESLPEGFKTEFTGYERLEDEAETVLIAKENRPLEEAKEKDTVEVVFSRTPFYAEKGGQVSDVGTVEWESGEGRVEYVFEALEGVIVHRVRVLKGILRRGQKVFLKVDRKRRKDTMRNHTATHLLHAALRKVLGEHVRQAGSLVAPERLRFDFTHYRALSAEEIKKVEDMVNEWIMQAIPVEVRYTSYEEAIRSGVIALFTEKYGDVVRVVEVPGVSKELCGGTHVKNTGQIGLFKIVSEESVSSGVRRVEAVTGFYTLELIRRYEDVMTRLKELLGAGENEIINRVESLREKVRELERRLSQGRVSEERISEKKLNDGTKLFYGVFEGVESKHLGGIADNVLNREKSGVVVLFSRFEDKVSLVVKVSNDLIEKYDASSIARNIAKELGGSGGGRKNFAQAGGRHPERLDEVLNRLEEFLG
>NZ_CP007633.1|WP_041844338.1|1432534_1433587_+|hypothetical-protein
MELLVDSRELKEWLFLLDKLVGTVEPSARFVDFFFRDGLWLRASDNCASVEVFLGKIPRFEGSRRVSLDLLKFFLSDVKVKEVHVTISQDHLVLKAGNEVLDVRCRVGGVPPEDGKEEFLCTLSKREFESSINFASSNLDEGEFLVLLFEEKDVLMFGPSSEIVTLSQISAVPTTSFSLKIPYVTVRHVFKALQRLNVQTLDFYEKSGKLVVKYPYLVMEVCGDRVSVEEREALKRVLSEKVVERLESKKEVLAKLVRKAAVISRGSYATLSRRGNVMRVVVKKKNLSYTAELFVEPGRDFLVVFPSKKLRSALARMEGEKVVLELTERFLKISNLSGTRAVFLELEEFS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007633_4	4.4\|1011619\|36\|NZ_CP007633\|PILER-CR,CRISPRCasFinder,CRT	1011619-1011654	36	NC_008379	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence	276930-276965	8	0.778
NZ_CP007633_5	5.1\|1090322\|36\|NZ_CP007633\|PILER-CR,CRISPRCasFinder,CRT	1090322-1090357	36	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	80758-80793	8	0.778
NZ_CP007633_3	3.4\|983801\|37\|NZ_CP007633\|PILER-CR,CRISPRCasFinder,CRT	983801-983837	37	NC_010811	Ralstonia phage RSL1, complete genome	144022-144058	12	0.676
NZ_CP007633_3	3.4\|983801\|37\|NZ_CP007633\|PILER-CR,CRISPRCasFinder,CRT	983801-983837	37	AB366653	Ralstonia phage RSL1 DNA, complete genome	144022-144058	12	0.676

1. spacer 4.4|1011619|36|NZ_CP007633|PILER-CR,CRISPRCasFinder,CRT matches to NC_008379 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence) position: , mismatch: 8, identity: 0.778

ccagggcgacgtacagaccctcgtatgggaaggcga---	CRISPR spacer
ggtgggcgacgtgctgaccctcgtatgg---ggcgagcc	Protospacer
   *********.* *************   *****

2. spacer 5.1|1090322|36|NZ_CP007633|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

cacattctacgtggatcgaatcgagatcctcaagaa	CRISPR spacer
cacggccaacgtggagcgcatcgagatcctcaaggg	Protospacer
***. .* ******* ** ***************..

3. spacer 3.4|983801|37|NZ_CP007633|PILER-CR,CRISPRCasFinder,CRT matches to NC_010811 (Ralstonia phage RSL1, complete genome) position: , mismatch: 12, identity: 0.676

tagacctgttcgacaagtacgtggcgttccctgagga	CRISPR spacer
cggacctgtacgacaagtacgtgacgttggacaacat	Protospacer
..******* *************.****   ..* .

4. spacer 3.4|983801|37|NZ_CP007633|PILER-CR,CRISPRCasFinder,CRT matches to AB366653 (Ralstonia phage RSL1 DNA, complete genome) position: , mismatch: 12, identity: 0.676

tagacctgttcgacaagtacgtggcgttccctgagga	CRISPR spacer
cggacctgtacgacaagtacgtgacgttggacaacat	Protospacer
..******* *************.****   ..* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

992399 : 1000025

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015919219.1\|992399_993164_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.4e-25	34.3
WP_015919220.1\|993138_993894_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_015919221.1\|993881_994376_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	9.7e-23	49.2
WP_015919222.1\|994389_995361_+	M23 family metallopeptidase	D7RWE0	Brochothrix_phage	3.0e-07	30.8
WP_038067053.1\|995365_995692_+	hypothetical protein	NA	NA	NA	NA
WP_015919224.1\|995765_996953_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.0e-138	65.3
WP_015919225.1\|996968_997268_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_015919226.1\|997341_998004_+	hypothetical protein	NA	NA	NA	NA
WP_038067057.1\|998063_998783_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.2e-43	43.6
WP_015919228.1\|998786_1000025_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	2.3e-36	36.1

DBSCAN-SWA_2

1536453 : 1554329

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012311192.1\|1536453_1537209_+	phosphate ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.3e-17	29.4
WP_041844385.1\|1537222_1537921_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_015919784.1\|1537895_1538576_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.6e-28	33.0
WP_015919785.1\|1538556_1539516_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.2e-14	28.3
WP_038067760.1\|1539508_1541317_-	ATP-binding protein	A0A139ZPI2	Marinitoga_camini_virus	5.5e-31	25.2
WP_015919788.1\|1541318_1543052_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.9e-45	27.5
WP_041844386.1\|1543026_1544160_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_038067763.1\|1544256_1544907_+	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	6.6e-11	26.3
WP_041844387.1\|1544890_1546621_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.2e-86	34.3
WP_041844388.1\|1546571_1547165_-	hypothetical protein	NA	NA	NA	NA
WP_041844389.1\|1547157_1548102_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F114	Synechococcus_phage	1.6e-37	35.6
WP_041844390.1\|1548098_1549292_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_041844391.1\|1549304_1550663_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.0e-43	38.3
WP_041844392.1\|1550643_1551261_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.8e-25	36.7
WP_041844393.1\|1551221_1552517_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.5e-48	32.3
WP_041844394.1\|1552523_1554329_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	9.5e-92	37.6

DBSCAN-SWA_3

1688706 : 1697425

Powai_lake_megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041844463.1\|1688706_1689429_-	ribonuclease III	A0A167RGU4	Powai_lake_megavirus	4.3e-19	26.0
WP_038067848.1\|1689421_1689979_-	phosphodiesterase	NA	NA	NA	NA
WP_052472238.1\|1689981_1691034_-	ABC transporter permease	NA	NA	NA	NA
WP_038067850.1\|1691074_1691668_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.2e-32	42.6
WP_015919935.1\|1692251_1693193_-	ornithine carbamoyltransferase	M1I6M4	Paramecium_bursaria_Chlorella_virus	2.9e-23	30.7
WP_015919936.1\|1693196_1694390_-	adenylosuccinate synthase	L7Y4J5	Megavirus	9.5e-48	31.9
WP_038067853.1\|1694395_1695691_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.0e-19	30.1
WP_015919939.1\|1696105_1697425_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.6e-48	28.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007633

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection