CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010537	Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence	2 crisprs	c2c9_V-U4,csa3,DEDDh	0	0	1	0
NZ_CP010536	Cupriavidus basilensis strain 4G11 chromosome main, complete sequence	4 crisprs	RT,DinG,DEDDh,WYL,cas3,csa3	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010537_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010537_1

47791-47887

Orphan

Consensus_repeat	Method
CCACGCAGAAACGGGTACGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP010537_1

>merge|NZ_CP010537|1|47791-47887|PILER-CR
CCGCGCAGAAACGGGTACGCCCCTGCTCTGGTCTGTCGGAAATCACGCAGAAACGGGTACGGAACGGGTTCTATTGACCACGCAGAAACGGGTACGC

>NZ_CP010537|1|1|47791-47887|PILER-CR
CCGCGCAGAAACGGGTACGC	CCCTGCTCTGGTCTGTCGGAAA
TCACGCAGAAACGGGTACGG	AACGGGTTCTATTGA
CCACGCAGAAACGGGTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010537.1\|WP_043352703.1\|55317_56625_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|234748
NZ_CP010537.1\|WP_173430723.1\|41843_43064_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP010537.1\|WP_043352683.1\|43050_44475_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NZ_CP010537.1\|WP_043352692.1\|46475_46667_-\|DUF4089-domain-containing-protein	unknown	unknown	gnl\|CDD\|372560
NZ_CP010537.1\|WP_043352697.1\|48230_48836_-\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP010537.1\|WP_052494836.1\|51268_52942_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP010537.1\|WP_043352679.1\|38337_39600_-\|glycosyltransferase-WbuB	unknown	unknown	gnl\|CDD\|236670
NZ_CP010537.1\|WP_043352686.1\|44705_45038_-\|YXWGXW-repeat-containing-protein	unknown	unknown	unknown
NZ_CP010537.1\|WP_082055270.1\|37154_38300_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340838
NZ_CP010537.1\|WP_043352698.1\|53468_53651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010537.1\|WP_043352710.1\|59141_60599_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_CP010537.1\|WP_043352693.1\|47319_47763_+\|cyanase	unknown	unknown	gnl\|CDD\|235079
NZ_CP010537.1\|WP_043357522.1\|49244_51272_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|274368
NZ_CP010537.1\|WP_043357520.1\|45691_46408_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP010537.1\|WP_043357516.1\|40804_41797_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187550
NZ_CP010537.1\|WP_043352700.1\|54060_54768_+\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|224837
NZ_CP010537.1\|WP_043352681.1\|39720_40803_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340839
NZ_CP010537.1\|WP_043352707.1\|57700_58480_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP010537.1\|WP_043352702.1\|54808_55321_-\|3-isopropylmalate-dehydratase	unknown	unknown	gnl\|CDD\|234762
NZ_CP010537.1\|WP_144410071.1\|56621_57635_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296

Protein	Function_ID	Function_description	E-value
NZ_CP010537.1\|WP_043352703.1\|55317_56625_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|234748	PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed.	0
NZ_CP010537.1\|WP_173430723.1\|41843_43064_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP010537.1\|WP_043352683.1\|43050_44475_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP010537.1\|WP_043352692.1\|46475_46667_-\|DUF4089-domain-containing-protein	gnl\|CDD\|372560	pfam13318, DUF4089, Protein of unknown function (DUF4089). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length.	3.94371e-05
NZ_CP010537.1\|WP_043352697.1\|48230_48836_-\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	3.57888e-19
NZ_CP010537.1\|WP_052494836.1\|51268_52942_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.47835e-73
NZ_CP010537.1\|WP_043352679.1\|38337_39600_-\|glycosyltransferase-WbuB	gnl\|CDD\|236670	PRK10307, PRK10307, colanic acid biosynthesis glycosyltransferase WcaI.	0
NZ_CP010537.1\|WP_043352700.1\|54060_54768_+\|phosphoribosyltransferase	gnl\|CDD\|224837	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only].	2.04615e-64
NZ_CP010537.1\|WP_082055270.1\|37154_38300_+\|glycosyltransferase	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	1.87664e-38
NZ_CP010537.1\|WP_043352710.1\|59141_60599_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	2.85968e-08
NZ_CP010537.1\|WP_043352693.1\|47319_47763_+\|cyanase	gnl\|CDD\|235079	PRK02866, PRK02866, cyanate hydratase; Validated.	8.75542e-93
NZ_CP010537.1\|WP_043357522.1\|49244_51272_+\|PAS-domain-containing-protein	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	1.27031e-47
NZ_CP010537.1\|WP_043357520.1\|45691_46408_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.40108e-38
NZ_CP010537.1\|WP_043357516.1\|40804_41797_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.3914e-163
NZ_CP010537.1\|WP_043352707.1\|57700_58480_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.45384e-62
NZ_CP010537.1\|WP_043352681.1\|39720_40803_-\|glycosyltransferase	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	1.89839e-21
NZ_CP010537.1\|WP_043352702.1\|54808_55321_-\|3-isopropylmalate-dehydratase	gnl\|CDD\|234762	PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed.	7.62347e-65
NZ_CP010537.1\|WP_144410071.1\|56621_57635_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	1.32413e-137

>NZ_CP010537.1|WP_043352693.1|47319_47763_+|cyanase
MNRSDITDLIIEAKVTKGIRWSDVAEKVGKSKEWTTAACLGQMAFDAPGAQAIMEIFGLPPEAEPWLRTVPYKGSLPTPVPTDPLIYRFYELVSIYGTTFKALIHEEFGDGIMSAIDFRMDLRRDADPNGDRVKIEMSGKFLPYKTY
>NZ_CP010537.1|WP_043352692.1|46475_46667_-|DUF4089-domain-containing-protein
MTQLCDQTLAHYARSALKLHGLELPKDAEARVIEQFLHVAAVAVPMLAHPLDAHEEPAPVNRP
>NZ_CP010537.1|WP_043357520.1|45691_46408_-|GntR-family-transcriptional-regulator
MSGAEVRVVSRAETVYAQLRDDIFEFRMLPGDRFTEGEIAQRLGVSRTPVREALLRLQSDALVQVYFRSGWEVVPLDFTRFDELYELRKLIEVNAVRMLCTHATPTVDHGALAQLAQFWQVPQDARLDDGRLVAQHDEAFHAALVAAAGNREIASVHRQVTERIRIIRRLDFTYAARVTATYDEHAAILREIQRQRAEQAVLLLSSHIEESRAEVRKITLHRLQTIRTDGTRTQHAPR
>NZ_CP010537.1|WP_043352686.1|44705_45038_-|YXWGXW-repeat-containing-protein
MKRQLLLALTTLAAGAALGLISPAQAQAYPPGYHGSPHMRPAPPPPRYEPRPPGRPGQAWVPGHWSANGGSYAWRGGYWQRERPGHRYVPERWVQSPRGGWVMRPGYWTR
>NZ_CP010537.1|WP_043352683.1|43050_44475_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MADDKQIVPVILCGGAGSRLWPLSRDGYPKQFLRLLGQDSLLQDTLLRVREIPGAQAPILVSNEAHRFVVAEQAREAGCALCAIVLEPHPRNTAPAAAVAALQARSGGSDPVLLVLPSDHLIRDRAAFARTVCQASAVAATGVVVTLGVVPTFAATGYGYIKAVPSNTADLLSVTRFVEKPSLEMATGYLQEGNCFWNSGIFLFRASVYLAALERFAPDILLAAQEAMVRGHRDLDFFRLDTDAFAACRSDSIDYAVMEHLRDAQMAPLSADWSDVGSWDAVWKAAEKTTDGNVAIGDVVTHHAQGCLVHASHRMVAVAGLDDVMVVETPDVVLVVHKDHCQDVKQLVEAVRAQGRPEATQHRKVYRPWGAYDAVDHGTRYQVKRITVKPGAKLSLQLHHHRAEHWVVVSGTARVRRGDVEYLLTEDQSTYIPIGEAHSLENPGRIPLELIEIQSGSYLGEDDIIRMADIYGRT
>NZ_CP010537.1|WP_173430723.1|41843_43064_-|GDP-mannose-4,6-dehydratase
MGAHDLEPFGRLAATELQPEASGDTGSGGAQRPRRALITGITGQDGAYLCELLIAKGYEVHGIKRRSSLFNTERIDHLYQDPQAPRRSLILHHGDMTDTASLVRVVQQSQPDEIYNLAAQSHVQVSFEEPEYTANTDALGTLRLLEAVRILGLEKQTRFYQASTSELYGLVQATPQKETTPFYPRSPYAAAKLYAYWITVNYREAYGMYACNGILFNHESPVRGETFVTRKITRAMARIVLGLQDTLYLGNLSALRDWGHARDYVEMQWLMLQQDKPEDYVIASGEQHSVREFVQLAALELGITVRFEGEGADEVGVVVRVDAAACPVTARCKPGDTIVRVDPRYFRPTEVETLLGDASKARERLGWSPRTSFGALVREMMEADFAAARRDAFVKLAGFRAYDHHE
>NZ_CP010537.1|WP_043357516.1|40804_41797_-|NAD-dependent-epimerase/dehydratase-family-protein
MPARRSRVFVAGHRGLVGSAIVRALDARGQADIITRGHAELDLTDQQQVRAFFATGGIDTVYLAAARVGGIHANHTFPAEFIQQNLMIAAVVIHEAWRAGVKRALFLGSSCIYPKFAPQPISEAALLTGPLEPTNAPYALAKIAGIALCESYNRQYGTDYRCVMPTNLYGPGDNYHPDNSHVIPGLLRRLHEASMAHAQQVPVWGSGTPLREFLYADDLAAACLHVMALPEAVYRQTAPAGFLNVGSNEEVSIRELAGLVAQTVGFRGDIVFDSSKPDGTPRKRLDCTALAATGWQPAVTLRDGLRLAYLDALQSARLAHGTAPAQHVEA
>NZ_CP010537.1|WP_043352681.1|39720_40803_-|glycosyltransferase
MKPLLRHPDERARPQAEACATSATSAAGSGAASPGALWPGQVIFPTGSADAGLWRRCLQQMRAISLSPGALVVLAGQSRLENWAMLLASMALGRRRAAFFHGAAFASVPGRFGALADAVLLRHCQGVFVGSERGCARAIAADVPPRRIFACRPPAVLPDGFDAAAEQRKRIEHAAPAHAPHFLHVGPLTHDPALVLLLYAFAGARQAWPAATLSLVGTGRAYGRLRAMADALGLGPSVRFLGAMAPADLPVEYRKANCLVLPDAAQRWHPLVREALSYGCPVVVSVNNDDAGELIRDGVTGLYFKAGDAVALARCLVQVPTRFADAAATATRCQAAALEDSPASAGRAMAAGCVRIMAAD
>NZ_CP010537.1|WP_043352679.1|38337_39600_-|glycosyltransferase-WbuB
MKILMYCLNYAPELTGIGKYTCEQAEWLAARGHEVRVVTAPPYYPAWRVGEGYRAWQYSRERRRWVEVYRAPLWVPRRPGGITRLLHLASFAVSSLPSLMAQLRWRPDVLFVVEPPLMCAPAALLFSHWSGCKTWLHVQDYEVDAAFALGLLRRPWLRRLAQRVERQLMMRFDRVTSISQAMVSLARGKGTEPERTALLPNWVNLREISAGSAALARRTLGIPADAVVALYSGNMGAKQGLDVMADAARLLDGRERLHFIFCGDGAGRPALEAACAGLPQVRFLPLQPAGMFASLLAAADIHLLPQRAGAADLVMPSKLTGMLASARPVVATAEPDTELGRVVAQCGVLVPPGDAAALAAAIDTLAAQPALRAHLGGAARRWAEQHLDRDMVLGELEKTLFALIRHQPAGAPSTAGVGSD
>NZ_CP010537.1|WP_082055270.1|37154_38300_+|glycosyltransferase
MDRFAAMIIDGMRARGHQADLWTPAAVMCRLPARGGLRKWLGYIDQYILFPMLALWRLRKVDKDTLLVLADHALGIWMPLLRHRPHVVHCHDFIALRTLAGEFPEQGLSASGHTYQSLIRWGLLQGKAFIAVSNKTMRDLRRLHPCAPEAAWVVYNGMNYPFRRMGTTEALACLQRAGVPADPQGMLVHIGGNQWYKNREGVLALYLAYCRQCREPRALWMVGGDPTAQMREQGERAIALGGSVRFLTGLPTEAVQAAYSLAAVMLFPSLEEGFGWPIIEAMACGAPVLTTNRAPMTEIGGDQVQLLEPLASGDMDAWAQRGADVLAGMLAWPQARRAEVAARSIAWAGNFSAEKAIDQYESIYLTVLAAASVEDRVSVDA
>NZ_CP010537.1|WP_043352697.1|48230_48836_-|response-regulator
MTDLRFYSTRTAAEMLGVSLRTVQLWVENGRLPAWKTDGGHRRIPADSVDRMVADQRSQTAAPTTAAAAPAGRAFRVLLVEDDEHLLQIYRMALETLNPSVEILEATNGYDGLLLIGSSKPDLVLLDLIMPGIDGFRLCRTIDAQQEFAATRIVVVTSLDKHAIADRGGIPGHIRVFSKPIPMSVLQSLVVTLQVSPGTPA
>NZ_CP010537.1|WP_043357522.1|49244_51272_+|PAS-domain-containing-protein
MAGAHRFARRPFWSGIVIVVCIWCALAGLGLWDRAAELRHVHAGLARVAGLLAEHAERTLAEADQIASLVGGAVTERGPALPLAQWKRGGYLAIAPFLEVSVLDRGGRLRASTRADFVSLDLSERQYFRVHESRALPSLYVGLPLAGRVSGHWSMPLSRGIVGAKDGRFAGVVVVSLDPGYLSQVYAKAGLGDSGTVLLAGTDDFVVRARWSQESCQPGQVLLPGSALRGALAGTQDSLVTAAGGLDGARRIYAIQRLPGRNLAVLAGISSDAALASYHDRLRAGIAIAGVVTLLVMFFQVRQFIAVGQLAALADRETVVRDILAEKKQHLRGLFLAMPDGVAVFGRDRVIDETNTALCELLGVSLSRLRGATQREFVHWLYRGRRAARQACCAEQLLAELDRAEPAGEFAGIVEFDMAVSPAYEVRIVHAASGGGLVLVLRDVTTQLRHDRMKSHFVSAAAHELKAPVAGIAGYAELLSADVVPVERRGGIYHAIHARAGQINALLSDLLDLARIEARSSGMLERERVEVATLVRETVTGEFAEAGRVRVIDAGVPLHVLADRAQLSQAVRNLIENALKYSDGKDEVTVTVEPLPLEQEKVSVRVEDRGIGMTKEEAGMAFENFYRANRRGNIRGNGLGLAIVREIVAVHQGQITLASEIGKGTVVTLSLPAAT
>NZ_CP010537.1|WP_052494836.1|51268_52942_+|EAL-domain-containing-protein
MKRWLRGEAGNAGARRLALLAALLAAGLALWLIAMLAAHDARERVERMSSAVRDNLELALADTLDIAYQDRELVGAPCRGVARQLQEQGAYTAYIRDVVLVARGMRYCSAVRGEIAAPLGELLNWRPGLQYLFAKPPHGASMALAVFSGTAPGSGVLVWVEGRYLADMVQSAGKLGFPGIEIEVAGTRFMLNGGAGGAGGAGGAGGAVSDAGEHAGAPALVRRDDAGQGAHGIVDIRPLTGHPITVIASAPHSLILHESLKYMVLPPLAAGIAALMVLGLHSRRAARRSFAAELQRGLRNGEFVPYYQPVVDLESGLCTGVEVLARWAHPRRGLLEPEHFIPAIEQQHLAVALTLHLIPRVLRDIEPLALPPAFHLAFNVTSEHFDDAGFWAEDSPLFALLLANVTPVLEITERDAVSLVEHQRSAIQRAKARGIKLAVDDFGTGYCGLAYFKQFEVDFLKLDRIFVQADPGDKVSGQIVDVTISFAHALDLAVVAEGIECEAQRAWLAGKGVRLGQGYHFARPLTRDGLCGWLPSHLERGVPAALPGDGLAVPERV
>NZ_CP010537.1|WP_043352698.1|53468_53651_-|hypothetical-protein
MSTHHKSTHDTQRKDRAVTDASGLGLDIPYGSLDAAALAELPYTFRPVGTATRFYNECFS
>NZ_CP010537.1|WP_043352700.1|54060_54768_+|phosphoribosyltransferase
MSRFPPLPPCFADRREAGIFLGRHLAERGFGAAAAGEAPLVLALPRGGVPVAFEVARILEGRLDILLVRKIGAPGYPELALGAVVEGDAAGSAPLTVANDDPWTRRARDSGAFDAERGRQLDEIGRRQQRYRGGASVPAMAGRTVIVVDDGVATGATMRAALEGVRQAQAKRVVAAVPVASIEGEASLRASAHEVICLNVPASFGAVGAFYLDFRQTTDEEVMALLRQRACGRPA
>NZ_CP010537.1|WP_043352702.1|54808_55321_-|3-isopropylmalate-dehydratase
MSPAPIPPLPGGRIWRFGDNVDTDQMAPGTHMKGGVEEIARHCLAGLRPEFPAAVRPGDLLVAGRNFGVGSSREQAPQALRHLGLAAVIAPSFAGLFYRNAINLGLPVLVCHDATRLVDGAAARLELGQACLVLPDGSRVACEPIPEFLHALLQAGGLVPHLKARLAAQR
>NZ_CP010537.1|WP_043352703.1|55317_56625_-|3-isopropylmalate-dehydratase-large-subunit
MRPLAGPAHTPATLAQKLVARAAGLERVTPGTIVTCRVDLAMSHDSSGPRRVAPLLRELGAKVWDPERYVVVTDHYLPAADPEAQAIVRFTRDWVREARLPHFIDGEGICHLVLPEHGHVLPGRFIVGGDSHSPTGGAFGAYMFGIGATEMAGVLATGEIWLRVPHTIRLQWDGKLSAGVCAKDIMLFLCGRLGLDGGRYEAIEYTGEAVTALPMQERMTLTNMSAELGAQTGLIAPDATTRAWLAQAGVPAAKLDAIALSHWRSEPGAPVLASHRFDAAALAPQVAAPHSPANTGPVDQAAGQRVDIAYLGACTGAKLEDLRMAASVLRGRRVAPGVTLQVAPASLRDQRQAESEGTLAILLDAGAQLLPNACNACAGYGPSRFPANSRAIASTARNFAGRMGESGSAVWLASPLTVAACAVTGSITDPRGLLP
>NZ_CP010537.1|WP_144410071.1|56621_57635_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MGRPLSQALTRPSRRKAMRGLLGAAASLGLLAQAPSARAQVAGRKPIRILVGAPAGGTTDTLARTIAQEMSRELDQPVLVENRPGAGGNIAADLVAKSAPDGTTLLMSFTSHTINATLYKKLPFDPVQDFTPITLVATVPSVLVATPSLPANNIPELIQLAKSKPGKLNFAIGSVGSSVHLAGDMFKMMTGTYIVNIPYKGTAPAITDVLSGQVDLMFASTFNVLPHVRSGKLKVLGVTSPAPLPQFPGVAPIGATVKGFESSAWFGLFGPAGLPPDVLQALYQAARRGLEAPAVRKRLELDGAQPVGNSPEAFAAFVRNDIKRWAKVVKYSGATPE
>NZ_CP010537.1|WP_043352707.1|57700_58480_-|GntR-family-transcriptional-regulator
MSEAVVPLYHQIYVVLRQQIVEGRFGQGPLPGEIDLAKQFHASRVTMRRVFDRLVQEGLVRRHRGLGTFVNPHPIKPVTLGDRPGSLLDNIIDMGQKTSVKVISIDDVHATPEVAEALGLQPGDPVVKVVRVRHYGSRPLSHITTYLPADLGRGLNRKDLEITPMLRLLEAAGVKLGRASQTLSARLADVVVAPLLDVPVGGALLAVRRVVLDKAGRPVQFLLGQYRPDRYEYRMELSPAGGDSANVWVEREARTGLRE
>NZ_CP010537.1|WP_043352710.1|59141_60599_+|hypothetical-protein
MKKTLLASAIALALGAGSQAWANPTNTNDPTKSDNFNTQTATATSTQSGGGALANENSTANQDNSTHNWTSNKTSTKVSSRTTTKTNSDNSGKVTFDAGYGNAGANNGSTATANFSNAFNTNKAIAISKLDGKVSGIRIDGIGNVATNYGNANGGAGGKGGAGYGGTGKGGTGGNGGNSGNGGSGGSGGSASNGSANAGYASNGSAHAGDGGNGGKATGWGGDGGNAKASGGDSLAGSAGLGGKGGGVYSDGGGALGAAKTGSGGKGGSAGSDGGGALAASVGVGGDSKARGNNGSGGNGGAGTAAATGGGASASGGAGGSSGAGTAVATGGAAGGTGGAGGSGSGGAATSIAGAATGTGGAGGAQASVGGNGGAGGSATNGGASTMASNGSATAGNGAVGASSGAGGAGGVGMGGTGGTGNGAVGGAGGAGGTNYVDAGTFNMSNTMTSVGQSAAGIMIANQNSGFASLVQQSVNVQANLAVGK

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Crispr_ID: NZ_CP010537_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010537_2

161084-161184

TypeV-U4

Consensus_repeat	Method
GGATCCGTTCTCGGACGGCGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010537_2

>merge|NZ_CP010537|2|161084-161184|CRISPRCasFinder
GGATCCGTTCTCGGACGGCGCGCGCAAGCTGGCTGGCATGGACCGCGGCGGCGTTTCCGCGGATCCGTCGCGCACGGTTGATCCGTTCTCGGACGGCGCGC

>NZ_CP010537|2|1|161084-161184|CRISPRCasFinder
GGATCCGTTCTCGGACGGCGCGC	GCAAGCTGGCTGGCATGGACCGCGGCGGCGTTTCCGCGGATCCGTCGCGCACGGT
TGATCCGTTCTCGGACGGCGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010537.1\|WP_043352858.1\|162530_163229_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010537.1\|WP_043352863.1\|164955_166104_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP010537.1\|WP_043352842.1\|154012_154651_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|273358
NZ_CP010537.1\|WP_043357556.1\|161529_162519_+\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP010537.1\|WP_052494845.1\|170281_173065_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378390
NZ_CP010537.1\|WP_043352868.1\|167019_168204_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|99746
NZ_CP010537.1\|WP_043352854.1\|159717_160068_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|377753
NZ_CP010537.1\|WP_043352852.1\|159136_159658_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010537.1\|WP_043357554.1\|160116_160659_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380376
NZ_CP010537.1\|WP_043352848.1\|156712_157810_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|182329
NZ_CP010537.1\|WP_043352859.1\|163349_164309_-\|DUF1177-domain-containing-protein	unknown	unknown	gnl\|CDD\|377684
NZ_CP010537.1\|WP_043352865.1\|166229_166985_-\|dipeptidase-PepE	unknown	unknown	gnl\|CDD\|179990
NZ_CP010537.1\|WP_043352847.1\|155939_156689_+\|flagellar-brake-protein	unknown	unknown	gnl\|CDD\|377813
NZ_CP010537.1\|WP_043352851.1\|157857_158706_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|131484
NZ_CP010537.1\|WP_043352845.1\|154774_155713_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP010537.1\|WP_043352840.1\|152804_153338_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_CP010537.1\|WP_043352872.1\|173061_173826_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP010537.1\|WP_043352841.1\|153401_153971_+\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
NZ_CP010537.1\|WP_144409915.1\|168249_169839_-\|OPT/YSL-family-transporter	unknown	unknown	gnl\|CDD\|224216
NZ_CP010537.1\|WP_052494846.1\|173889_174999_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065

Protein	Function_ID	Function_description	E-value
NZ_CP010537.1\|WP_043352863.1\|164955_166104_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	1.99162e-68
NZ_CP010537.1\|WP_043352842.1\|154012_154651_-\|LysE-family-transporter	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	1.0068e-41
NZ_CP010537.1\|WP_043357556.1\|161529_162519_+\|VTT-domain-containing-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	4.62085e-30
NZ_CP010537.1\|WP_052494845.1\|170281_173065_+\|hypothetical-protein	gnl\|CDD\|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	0.000316692
NZ_CP010537.1\|WP_043352868.1\|167019_168204_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|99746	cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.	2.95101e-112
NZ_CP010537.1\|WP_043352854.1\|159717_160068_-\|DUF1304-domain-containing-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	1.25383e-38
NZ_CP010537.1\|WP_043357554.1\|160116_160659_-\|cupin-domain-containing-protein	gnl\|CDD\|380376	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain. This family includes eukaryotic, bacterial, and archaeal proteins homologous to YML079wp, a Saccharomyces cerevisiae cupin-like protein of unknown function that structurally resembles plant seed storage and ligand-binding proteins (canavalin, glycinin, auxin binding protein) as well as the bacterial RmlC epimerase. YML079wp is non-essential in yeast and localizes to the nucleus and cytoplasm. The presence of a hydrophobic ligand within a well-conserved binding pocket inside the cupin beta-barrel and sequence similarity with bacterial epimerases suggests a possible biochemical function for YML079wp and its homologs. Also included in this family are Shewanella oneidensis So0799, Agrobacterium fabrum Atu3615 and Branchiostoma belcheri Bbduf985. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	8.01593e-76
NZ_CP010537.1\|WP_043352848.1\|156712_157810_-\|diguanylate-cyclase	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	1.31674e-74
NZ_CP010537.1\|WP_043352859.1\|163349_164309_-\|DUF1177-domain-containing-protein	gnl\|CDD\|377684	pfam06675, DUF1177, Protein of unknown function (DUF1177). This family consists of several hypothetical archaeal and and bacterial proteins of around 300 residues in length. The function of this family is unknown.	4.5554e-160
NZ_CP010537.1\|WP_043352865.1\|166229_166985_-\|dipeptidase-PepE	gnl\|CDD\|179990	PRK05282, PRK05282, dipeptidase PepE.	1.22977e-127
NZ_CP010537.1\|WP_043352847.1\|155939_156689_+\|flagellar-brake-protein	gnl\|CDD\|377813	pfam07317, YcgR, Flagellar regulator YcgR. This domain is found N terminal to pfam07238. Proteins which contain YcgR domains are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias.	1.81466e-31
NZ_CP010537.1\|WP_043352851.1\|157857_158706_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|131484	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions].	4.68785e-89
NZ_CP010537.1\|WP_043352845.1\|154774_155713_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	8.26373e-67
NZ_CP010537.1\|WP_043352840.1\|152804_153338_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	9.47434e-50
NZ_CP010537.1\|WP_043352872.1\|173061_173826_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	8.14422e-54
NZ_CP010537.1\|WP_043352841.1\|153401_153971_+\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	8.36307e-33
NZ_CP010537.1\|WP_144409915.1\|168249_169839_-\|OPT/YSL-family-transporter	gnl\|CDD\|224216	COG1297, COG1297, Predicted membrane protein [Function unknown].	1.43079e-42
NZ_CP010537.1\|WP_052494846.1\|173889_174999_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.7131e-25

>NZ_CP010537.1|WP_043357554.1|160116_160659_-|cupin-domain-containing-protein
MPARPDSQHKDKDQLIQRFGLQPHPEGGYYRETHRDAARVLRQSSEGAGNPATHAASTAIYYLLCDNAYSAWHRIRSDEVWHFYAGCPLNVHVLDQDGSLTTHRLGNALADDDAVFQAVVRAGCWFAAERSDPDGFSLVGCTVAPGFEFSEFELADAGSLLASHPRHAALIARLAPAPKR
>NZ_CP010537.1|WP_043352854.1|159717_160068_-|DUF1304-domain-containing-protein
MTWLSLAAVALVALEHVYIMVLEMFLWDKPKGMRAFGLTQEFAVATKALAANQGLYNGFLAAGLLWGLATAAVPVQLFFLCCVLVAGIFGACTASRKILWVQGLPAAIAIALVLLA
>NZ_CP010537.1|WP_043352852.1|159136_159658_+|hypothetical-protein
MTHQPELSPEADDPDAAGDNAEKIQEPRLWRADGWTARVIKNEDDDGWAVAMIKDGEPEPALVGPWTMGRDKKNPKPLDTNAFSTLVKTASEVLRRHEQQLHAMLHKSVIVDTDTARISVTLDIVPDEDNPFAVLRATDELGDELAQVRVSPGFKLSKASAADWIENAYRKPR
>NZ_CP010537.1|WP_043352851.1|157857_158706_-|helix-turn-helix-domain-containing-protein
MDAPIPSSPGQATAATVRVARPQADLLNSFAGDPNFMLSLARGLSVLEAFSERKRPLTISQVAQRTQLSRASVRRCLYTLEQLGYVSQQGGQFALRPRVLHLGHAYFSSTSLVSLAQPILDALSTRIQQTSALAILDDTDILYLVRSEVQRVLTYSLGMGSRLPAYCTSIGRMLLAHLAEPALEDFFDHVDLRPRTLQTKISRAELEASFAHARELDYVLIDEELEPGLRAIAVPVRGISGSVMAGISVSVRAAQVSEAEMISRLLPPMREAAVAIGKLIAA
>NZ_CP010537.1|WP_043352848.1|156712_157810_-|diguanylate-cyclase
MAQSTLNPLAGKGMRFVRRVYAMRAIGLAIGFFAVAAAMLEAGVPRWLLALVFLHGFAWPHVAAWRSRRSEVPFRAEIQNMMIDAVLGGVWAAAMKFNLLPSVLILAMMSMNNVAAGGTRLLLHGLGWHLAGALAGIVAFGAAWHPQANLTTIVASLPMLVLYPLALGRTTYSISRRLAAHGKQIEANSRLDGLTGVLNRGYWEAMLAAEFQACKTGRRSTASLVLLDIDHFKQLNDTHGHLAGDEALKAFAALVMQHAAQHGTAARGETRQCLVGRYGGEEFGVLLSGASLTQAVEMAERLSRSLQPGTAAGAGIAALRGHTASLGVAAFDAGMAGHHEWLAHTDRALYEAKRAGRNRIRISAG
>NZ_CP010537.1|WP_043352847.1|155939_156689_+|flagellar-brake-protein
MSLQDSPEQSELDAGALPDDRYRLTHSSQIGTVLRDLAWQKCILNVRARTAHEMVTSVLHVDPASRTFVFDWCSTEPERQALLASNENAFSASLRGVPVNFMIGTPEITQYKGGPAFSAPFPEKLYHFQRRRHFRARTLVTKGYVCTIKMSDGTALKLDIADLSLSGVGLRSKTVDATQLPVGTTISGVHLDFGALGKLDLSVQVVGHWLAGRDDSAIHHFGCAFSNLDGRMENFLQRLVFALELASRG
>NZ_CP010537.1|WP_043352845.1|154774_155713_+|LysR-family-transcriptional-regulator
MHWLGGIRFFEAAARHQSFMRAADELHLTHGAVSRQIRQLEEALGVTLFERRNRAVFLTEAGHILHAAATQSLDVLGAAAQRIRAHGQPRALVLSCEPTIAMRWLIPRLPRFTESHPEVTLHLMAAGGPVDFARSGVDLALRRNDFHVGPELHAHEVAEEWVGVVCRAGASAGASSHRLHTRSRPDAWQRWAKAAGGAQRFGADAWYEHFYLTIQAAAAGLGCAIASRLMVADELADGRIAAPRGFVRDGSCYQLLSPVAFEHDARRRAVRDWLCQEAQASLGADPAQVAASPHPVRGAKGAAKRGGRKDGK
>NZ_CP010537.1|WP_043352842.1|154012_154651_-|LysE-family-transporter
MHPLTELLAVATITVLAVISPGPDFAMVMRNSFVHGRKAGLLCALGIALGVQVHVFYTMFGVALLMEHAHNLLTVVKLLGAAYLIWIGIQTLRKRAPDPNAPPLGADAGTPALTAPGALKMGFLTNALNPKTTLFVVSTYTQVVNAQTPLAVQFGYGLFMSLAHLAWFGLIACCFSTPALRAAMLRRQRWLDRVIGSVLLALGVALGLGNLA
>NZ_CP010537.1|WP_043352841.1|153401_153971_+|RNA-2',3'-cyclic-phosphodiesterase
MARLFVAIEVPPALAVALLARVPRVAGIRAAAPHQVHLTLHFLGEQDDATAACIERALGAVRGAAFALTVKEAGYFRGRRASVLWAGVAPHAALDSLHAQMAQALAGCEGATLPDAGAQQHARFHPHITLARCGPAVADTALQAWRDAQAGLVCEPFPVERFILYQSHLRAGGAQHVCRRAYVLDPAAG
>NZ_CP010537.1|WP_043352840.1|152804_153338_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MIAYRIVASPLGEVLLRVDGARLSGLFFSGQKYYPAAATPDTNLPAAAKPVFEQAADELADYFAERLQVFTVPMVLGGSPFQHAVWQALCEIPFGETTSYGELGAGLGLAPTHARAIGGAVGRNPLSVIVPCHRVLGASGDLTGYAGGTERKRALLRLEGTAAAMALPILRQSALAC
>NZ_CP010537.1|WP_043357556.1|161529_162519_+|VTT-domain-containing-protein
MGELQSLLESHGVMLVFLNVLAEQAGLPVPAVPMLFVAGALGMREGGPALGAVLAAVILACLIADTAWYFAGKRLGQPMLRTICRVSISPDSCIRQTQSLYLRVGPRSLVFAKLLPGAGALSTAMAGMTATPFAVFLFYDAIGALVWAGGALLVGVVFTDFVEVILNAFSIYGPVAVMVVLGAFAAFVAWKFWRRVRLLRRTRRVPRMSVEELEARRLGDRFPLVLDVRSDAVERIPGATIIDLNAPLELLSEHPTSIDIVVYCACPHEVSAAVLAERLKAAGYANTWALAGGFDEWKRLHGEASQATATEGDAAVALASHAGGPGALR
>NZ_CP010537.1|WP_043352858.1|162530_163229_-|hypothetical-protein
MLRLNDTDGPALSRCLSALAACAALAALPGCERNEPAPATSATSPSAAASSDAQAARADDAAQPDDEPGYAPAPLARPLVALRGLTSMADVQAAWGKPPDITPNQDECGTALDEEHLMDYHYPDALIEVGRSGDAVIRALHGIPAGLTLKLENQEVTAASTLTQLNTALRKNPRWKLAEAPGKVRSPSDRDEGDPLEQLAYTTLYTLDGDGDQYRLYFLGDRLVGYAYWVGC
>NZ_CP010537.1|WP_043352859.1|163349_164309_-|DUF1177-domain-containing-protein
MTLQQTLVIHEALDSPNANGAVVRDLFGAYTAAGVTVDVVTINNAPPEPTTNTTDFLTIVIPGTQGKRGGGKAPTLGVIGRNGAIGARPELVGLVSDADGPIGSLAVALKLAQMKHKGDHLAGDVIVTTHLSTNVSMQPHDPVPFMGMPVSSDTMNAYQVLPEMDAILSLDASKGNSIIKQRGFAISPTAMQGYILRVSPDLVATMESTTGCPAVTFPISQQDITPYHNGLYHFNSIMQPHVATAAPVVGVALTAQSVVSGSATSANHEIDIAEAVRFCVEVAKRFGAGKCQFFNVVEWGKIRAIYPDMTGFQRAGAAH
>NZ_CP010537.1|WP_043352863.1|164955_166104_-|porin
MTNKHWLGALALSLPAAAMAQSGVTLYGVIDTALTYQTHSDPNGSALASLQQGGEGFLSGSRFGLRGSEDLGGDLSAGFVLENGLLADTGKLDQQGQLFGRQAYVKIGSKRYGEVALGRQYTTANTMLYYVDPLGVGAAPSNAWMVFLTGQRYDNAISYTGNYGPLALIAEYALGETAGKGSAMSSVSLGMKYASGPLVAVGDFQQTRDSMSRAARIYLAGLKASVGRASLFANYIHSDRDAGFDSSKGGTDTATITSMSTAATATNRAAFNSVFGGSRRDDFFTVGANYTVTPAVTLTASVMHDRTRADAFSGNRTTAYGVADYALSKRTDLYLALAYDWVHGDWSGLFGNATTNWTGDSGKKLDGRNNQTTVMLGMRHLF
>NZ_CP010537.1|WP_043352865.1|166229_166985_-|dipeptidase-PepE
MNQRILLMSSSRKDNLGYLEHADAQIHALLRHEPRKVLFIPFAGVTFSFDTYEGMVKPVFERLGYALASIHHSADPRRAVDEAEAIAVGGGNTFALLKRLYDADLVDAIRAKVQAGTPYVGWSAGSNVACPTIRTTNDMPIVQPPSLRALRLVPFQINPHFIGGKPAGHNGESREERLAEFLHINAPEQVFALPEGSALFSDGSNGTVLGERHALHFTAEGQVETLREGETFPLSRITGPAGMDGWQDFRA
>NZ_CP010537.1|WP_043352868.1|167019_168204_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MDIQAIRADTPLTASTIYLDTAAASLPPDAVLDAVRAYLLDTGHVGIYLPAFRKATYARVEAARAQLAGLLGAAADEIAFTKNATESISIVARGVAWQAGDEVLVADTEMLSNLLPWKRLEQTHGIVVKMVAADAQGLLSPDSFTAAVTPRTRLLTFSHLPNSTGAVQPAAAICAVARAHGVLSLVNAAQSVGMLRSDVQALDCDFLAGCGRKALRATEGSGFLYVRRALIETIEPALVGWWNGSYDRATGALSLVPGARRFEAGCPIVPAILGLGTAIGYAERIGIDAIEARVRNLTAYAVEKLCAVAGFELYGPSNAAERIGIVPFNVRGVDPAKIVAALEQQQCIIEAGNFMADAILARYGVSTMARVSLHYFNTHEEIDRVAELIAAAVA
>NZ_CP010537.1|WP_144409915.1|168249_169839_-|OPT/YSL-family-transporter
MNPPLAAKPATRARITEPFLLLVSVGLSVFGAMIGMQLIVSLGISANTSIIGALIAIVFSRIPLEITRRFRVLERQNLVQTAISSATFGAANSLMIPLGVPYAMGMPELATPMLIGAVIAMFVDGAMLYFLFGSKIFPATGTWPAGIATAEAIWAGDRGGRKAAFLGLGIAVGVGGAWLGIPMSAFGAAFLGNLAALTMFGLGLLTRGYSVPLLGIDIAKAYIPHGLMIGAGLVALFQVAREIHKSRNAPAADARTIEVPAARASRILSGGFLVYLAIALLISVLAGHVSDMSLGMLVAFVLYAAFAAYVHELIVGIAAMHSGWFPAFAVALITLTIGILIGFPPTALAVLVGFSAATGPAFADMGYDLKTGYLLRGEGRDMEAELAGRKQQFFAAMIGFAVAAVVVLVFHGTFFSQGLLPPVDRVYAASIKAGSSAEIARNLVIWAIPGALLQLLGGSRRQLGILLSTGMLIASPLAGWAVLAGLLIRFVLLRLRGERDIAEMSAFAGGVIAGDALFSFFGSVTKLRK
>NZ_CP010537.1|WP_052494845.1|170281_173065_+|hypothetical-protein
MPVQEQPSDDELARIARRRRQLGIARRARDGDSNWALALSGGGIRSATFCLGVMQALAKAPTPPVAGPAAADAIQEGDGPDAIVPAPEPATTALLGQFDYLSTVSGGGYIGAFFCSLFVPGRLKPDTTPPEAAALAYRTLQHEPPGRIRSSASYAPDPGRAAVAWLRENGRYLTPTGAGDSLYAASLVVRNWFAMQYVIGSALLLLLAVLALLRHLAIGTWLDLGRHEMDLLHDARQVFNEGGLAIWWSELLWLPLAALLLFAVPPGVAYWLVYPRGGDGNAALRFDSLATRLAALAGVAMLVMAAALHHLGPGLVLSCLLLAMAVLALSGVACCFVLCRVPPATVQDYRVRATRLLSQAIGVALWLAALGVADTVARTFYLYTQASHQPWRTLGLAGMLGALVWLIRYGAALVDGKAGTRRARLPVSLLAGAAAAVVALLVFVLWSWLVLWVRWNGGEPLDWFTFGNAYTTPVLCTLSVLALGLTMIAGRFAGFLNLSTLQPFYSARLTRAYLGGSNGKRFMPGSGAAPAQQHASRRARFSVAEPAHGDALSLNTYYDPAMLAPLHLINVTLNLTVDPAEQLVQRDRKGKPLCVAPGPFVLPATGSRAVPEDSFVRFTVDGQRYFPQTHKAGGSELSQSRTLGDWIATSGAVVSTGLGRSTTLGTSLLLGLANLRLGTWWPSYPLDAGSAPRAGGAERNRVQAERAGTPWLGGLITLFRTQYYLACELSARFHGTRRGWQYLSDGGHFENTAVYELLRPERGVGLVVLCDCGADPDYQFGDLANLIRLARIDMGLEIVVDAAAAGDAVLGGVFGTQEDFLPAARQGQAAANKCALLLNVFRADEPAATRRPVSRIVLLKPCPIASAPVDVQQYGAGHPAFPQEPTIEQFFNEAQWESYRELGFSIGQLVFGGGAGGDAVARALWAR
>NZ_CP010537.1|WP_043352872.1|173061_173826_-|IclR-family-transcriptional-regulator
MTLKTLDGALALLTYFTVRQPTWGVRELAKHSGVHHAVVHRVLATFAANGFLVQDAASGKYSLGLRLFELGQVVRKTFSPAEVVQPVLEKLAAQSGETVFLSWLDGHEGLCVGMVQSQHQLRFSIELGQRFALHAGAHAKAILAFQDDAFRARVLENARQRAQDQPALAAPDPAVIEPQLAEIREQGWAHTRGEAAASVAGLALPLWSRDQTEVVGSLAIAGPQQRLNEESVPRLLEALREASRRLEEVVGFGR
>NZ_CP010537.1|WP_052494846.1|173889_174999_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MKAITAELKSDIEDAAAAGLLSSLPPAVAEKDIHITDALIALSKIRIAHIAHRQERRKGDTRPARVALKSQLVFAGGTCLSKAHGLIERMSEDIDIKVLLENAPDGYALPKGHSTRKRLGDIQTELEERLTRVGFVFTKIEDKNNPFSNDNRRYYRLAVEYGPQFKDVSGVLRPELKVELIHRPPKLPVEALDMGYLLDRFIPRDTPVRFQMLAISVAETLAEKVLSLLRRCAWKWDGHQRGDSDPALVRHVYDVWRIHTARPEAIEPARAVFAALVVKDVEEFKGQHPGFDTKPYAVLSNALDRARSDEGLRRDFSQRLLPLLFAKEKPVFETCFASFAAIAEHFLTTASVTKSGWHPPPPCLPDNKD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1993517 : 2052291

Acidithiobacillus_phage(28.57%)

holin,transposase,integrase

attL 2044773:2044788|attR 2061124:2061139

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144409811.1\|1993517_1995002_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_043355224.1\|1997059_2001058_-	hypothetical protein	NA	NA	NA	NA
WP_052495059.1\|2001174_2002110_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_081092605.1\|2002532_2003147_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_082055149.1\|2003420_2003840_-	hypothetical protein	NA	NA	NA	NA
WP_144409990.1\|2003823_2005878_-	hypothetical protein	A0A2H4J185	uncultured_Caudovirales_phage	1.4e-09	24.2
WP_124684266.1\|2005874_2007563_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_043355229.1\|2007574_2008843_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_043355233.1\|2010365_2010878_+	hypothetical protein	NA	NA	NA	NA
WP_082055150.1\|2011259_2011505_-	HNH endonuclease	NA	NA	NA	NA
WP_043355234.1\|2011501_2011858_-	RidA family protein	NA	NA	NA	NA
WP_043355236.1\|2011868_2013263_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_082055307.1\|2013268_2013622_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_043355238.1\|2013611_2014757_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_043355240.1\|2015056_2015959_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_172966117.1\|2016592_2016805_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_035927402.1\|2016820_2017588_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.0e-71	54.6
WP_043355244.1\|2017600_2019124_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.4e-149	52.6
WP_082055151.1\|2019171_2019867_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_043355246.1\|2020143_2020833_+	histidine ABC transporter permease HisQ	NA	NA	NA	NA
WP_043355248.1\|2020836_2021550_+	ABC transporter permease	NA	NA	NA	NA
WP_043355249.1\|2021609_2022404_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-09	29.5
WP_043355251.1\|2022574_2022994_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_043355252.1\|2023457_2024519_-	ornithine cyclodeaminase	A0A1V0SL93	Klosneuvirus	3.3e-100	53.6
WP_043355268.1\|2025379_2026615_+	aconitase X catalytic domain-containing protein	NA	NA	NA	NA
WP_052495060.1\|2026611_2027103_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_043358183.1\|2027253_2028984_+	ClcB-like voltage-gated chloride channel protein	NA	NA	NA	NA
WP_052495061.1\|2029022_2029820_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_052495062.1\|2030179_2030752_+	hypothetical protein	NA	NA	NA	NA
WP_043355275.1\|2030763_2031357_+	hypothetical protein	NA	NA	NA	NA
WP_124684269.1\|2031526_2032441_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_082055153.1\|2032639_2034319_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	6.8e-68	31.3
WP_172966118.1\|2034418_2035756_+	MFS transporter	NA	NA	NA	NA
WP_043355278.1\|2035907_2037338_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_082055154.1\|2037450_2038146_+	response regulator transcription factor	NA	NA	NA	NA
WP_052495065.1\|2039103_2039529_-	DUF1917 domain-containing protein	NA	NA	NA	NA
WP_043355281.1\|2039672_2039915_-	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_043355286.1\|2040383_2041067_-	hypothetical protein	NA	NA	NA	NA
WP_124684270.1\|2041181_2041565_-	hypothetical protein	NA	NA	NA	NA
WP_082055155.1\|2041799_2042135_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_052495066.1\|2042603_2043443_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	4.6e-33	36.1
WP_043355288.1\|2043704_2044085_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_043355290.1\|2044178_2044583_+	DoxX family protein	NA	NA	NA	NA
WP_043355291.1\|2044595_2045327_+	SDR family oxidoreductase	NA	NA	NA	NA
2044773:2044788	attL	NA	NA	NA	NA
WP_043355292.1\|2045425_2046064_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_066735637.1\|2046322_2047054_-	hypothetical protein	NA	NA	NA	NA
WP_043355296.1\|2047101_2047737_-	hypothetical protein	NA	NA	NA	NA
WP_066735635.1\|2047766_2048090_-	hypothetical protein	NA	NA	NA	NA
WP_043355300.1\|2048095_2048626_-	hypothetical protein	NA	NA	NA	NA
WP_043355301.1\|2048956_2049220_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_043358190.1\|2049506_2050538_-	DNA-binding protein	NA	NA	NA	NA
WP_043355303.1\|2051064_2052291_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2061124:2061139	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010536

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010536_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010536_1

1250762-1250892

Orphan

Consensus_repeat	Method
GCTCATCGGAGCATGCTGGATCGATATCGTCCACCTCGCCAACACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010536_1

>merge|NZ_CP010536|1|1250762-1250892|CRISPRCasFinder
GCTCATCGGAGCATGCTGGATCGATATCGTCCACCTCGCCAACACTCACCTCTCCCGCGAGCGGGAGAGGGATGCAAACCGGTCGCTCATCGGAGCATGCTGGATCGATATCGTCCACTTCGCCAACACTC

>NZ_CP010536|1|1|1250762-1250892|CRISPRCasFinder
GCTCATCGGAGCATGCTGGATCGATATCGTCCACCTCGCCAACACTC	ACCTCTCCCGCGAGCGGGAGAGGGATGCAAACCGGTC
GCTCATCGGAGCATGCTGGATCGATATCGTCCACTTCGCCAACACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010536.1\|WP_043344774.1\|1244711_1245404_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567
NZ_CP010536.1\|WP_043351448.1\|1257751_1258687_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP010536.1\|WP_043344777.1\|1246930_1247563_+\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|368209
NZ_CP010536.1\|WP_043344786.1\|1254620_1255382_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010536.1\|WP_043344784.1\|1252785_1253805_+\|threonine/serine-dehydratase	unknown	unknown	gnl\|CDD\|107205
NZ_CP010536.1\|WP_043344785.1\|1253816_1254206_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP010536.1\|WP_043344793.1\|1258712_1260221_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NZ_CP010536.1\|WP_043351444.1\|1246583_1246886_+\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913
NZ_CP010536.1\|WP_043344790.1\|1256296_1257559_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173844
NZ_CP010536.1\|WP_043344783.1\|1251002_1251695_+\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP010536.1\|WP_043344773.1\|1243829_1244678_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NZ_CP010536.1\|WP_043344781.1\|1247896_1249615_+\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
NZ_CP010536.1\|WP_043344779.1\|1247591_1247897_+\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|237303
NZ_CP010536.1\|WP_043351446.1\|1251746_1252376_+\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NZ_CP010536.1\|WP_043344788.1\|1255415_1256108_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|183298
NZ_CP010536.1\|WP_158408262.1\|1252507_1252684_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010536.1\|WP_043344776.1\|1245644_1246517_+\|urease-accessory-protein-UreD	unknown	unknown	gnl\|CDD\|223899
NZ_CP010536.1\|WP_043344771.1\|1242627_1243833_+\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NZ_CP010536.1\|WP_043344782.1\|1249624_1250260_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237323
NZ_CP010536.1\|WP_082054979.1\|1240990_1242628_+\|urea-ABC-transporter-permease-subunit-UrtB	unknown	unknown	gnl\|CDD\|200272

Protein	Function_ID	Function_description	E-value
NZ_CP010536.1\|WP_043344774.1\|1244711_1245404_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	2.44302e-140
NZ_CP010536.1\|WP_043351448.1\|1257751_1258687_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.01964e-66
NZ_CP010536.1\|WP_043344777.1\|1246930_1247563_+\|HupE/UreJ-family-protein	gnl\|CDD\|368209	pfam04955, HupE_UreJ, HupE / UreJ protein. This family of proteins are hydrogenase / urease accessory proteins. The alignment contains many conserved histidines that are likely to be involved in nickel binding. The members usually have five membrane-spanning regions.	4.86399e-38
NZ_CP010536.1\|WP_043344788.1\|1255415_1256108_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	1.28691e-80
NZ_CP010536.1\|WP_043344784.1\|1252785_1253805_+\|threonine/serine-dehydratase	gnl\|CDD\|107205	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.	3.08609e-118
NZ_CP010536.1\|WP_043344785.1\|1253816_1254206_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	1.52138e-13
NZ_CP010536.1\|WP_043344793.1\|1258712_1260221_-\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	1.16604e-09
NZ_CP010536.1\|WP_043351444.1\|1246583_1246886_+\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	2.3297e-71
NZ_CP010536.1\|WP_043344790.1\|1256296_1257559_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173844	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.	0
NZ_CP010536.1\|WP_043344783.1\|1251002_1251695_+\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	2.06157e-61
NZ_CP010536.1\|WP_043344773.1\|1243829_1244678_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.05143e-142
NZ_CP010536.1\|WP_043344781.1\|1247896_1249615_+\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
NZ_CP010536.1\|WP_043344779.1\|1247591_1247897_+\|urease-subunit-beta	gnl\|CDD\|237303	PRK13203, ureB, urease subunit beta; Reviewed.	9.45373e-73
NZ_CP010536.1\|WP_043351446.1\|1251746_1252376_+\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	4.40646e-125
NZ_CP010536.1\|WP_043344776.1\|1245644_1246517_+\|urease-accessory-protein-UreD	gnl\|CDD\|223899	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones].	2.17777e-80
NZ_CP010536.1\|WP_043344771.1\|1242627_1243833_+\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.83018e-154
NZ_CP010536.1\|WP_043344782.1\|1249624_1250260_+\|urease-accessory-protein-UreE	gnl\|CDD\|237323	PRK13263, ureE, urease accessory protein UreE; Provisional.	4.92562e-91
NZ_CP010536.1\|WP_082054979.1\|1240990_1242628_+\|urea-ABC-transporter-permease-subunit-UrtB	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	6.22821e-157

>NZ_CP010536.1|WP_043344782.1|1249624_1250260_+|urease-accessory-protein-UreE
MQKIDKHLAAPHGIAAVLVRRAPKLVLPFSDRSKSRLRATLDNGEEVALFLARGTVLRGGDLLVTEGGVFVEVQAAPESVLQVGASDPQALMRAAYHLGNRHTPVEVGRDYLRLEFDPVLADMLARLGVQAERAELPFEPEAGAYGGGHKHGHDATFAEDYAAAQAVFREHHGHEHDHGHAHSHDHGDEHGHKHGHDHAAHVHDENCGHKH
>NZ_CP010536.1|WP_043344781.1|1247896_1249615_+|urease-subunit-alpha
MSVKISRQAYAEMFGPTTGDRLRLADTGLVIEVEKDFTVYGEEVKFGGGKVIRDGMGQSQRMAKDCVDTVITNALIVDHWGIVKADIGLKDGRIASIGKAGNPDIQPGVTIVVGPGTEVIAGEGMIVTAGGIDSHIHFICPQQIEEALMSGVTTMIGGGTGPATGTFATTVTPGPWFMERMLQAVEAYPMNIGLLGKGNASLPGPLMEQVEAGAIGLKLHEDWGTTPAAIDNCLSVADATDTQVAIHTDTLNEAGFVEATVAAFKGRTIHTYHTEGAGGGHAPDIIKVCGEPNVLPSSTNPTRPYTVNTLDEHLDMLMVCHHLDPSIAEDIAFAESRIRRETIAAEDILHDLGAFSMISSDSQAMGRVGEVIIRTWQTAHKMAAQRGKLPGDPNDARGGHDNFRVKRYIAKYTINPALTHGIAHEVGSVEVGKWADLVLWKPAFFGVKPSLILKGGMIAAAAMGDPNASIPTPQPVHYRPMFGAAGRALHKSSLTFVSQAALAADVGGRYGLNKVLSAVQGTRTVGKRDMVHNDWQPNVTVDPETYQVVADGQLLICEPATVLPMAQRYFLF
>NZ_CP010536.1|WP_043344779.1|1247591_1247897_+|urease-subunit-beta
MIPGELMPAEGEIELNAGRATVSVVVANTGDRPVQVGSHFHFYETNPALDFDREATRGFRLNIAAGTAVRFEPGQSRTVELVALAGARIVYGFNGKIMGAL
>NZ_CP010536.1|WP_043344777.1|1246930_1247563_+|HupE/UreJ-family-protein
MNHAEHANRSRAVRLATVGASLALASAAAVAHPGHDATTVGASLFAGLLHPFTGMDHLLAMVGVGVWSALGARSPREALRMPFAFVALMLAGAVLGLAGMSLALVEPMIAASLLVIGLLVALRAKLPAWAGMAIVGGFAVFHGYAHGSELPATAGALPAVAAYVGGFSVATMVLHAAGIGLGGALRRHAGWLARLAGAGVALYGVGLMVA
>NZ_CP010536.1|WP_043351444.1|1246583_1246886_+|urease-subunit-gamma
MELTPREKDKLLIFTAALLAERRRARGLKLNYPEAVALITAAIMEGARDGRSVAELMHEGTTVLSREDVMDGVAEMIPDIQVEATFPDGTKLVTVHHPIV
>NZ_CP010536.1|WP_043344776.1|1245644_1246517_+|urease-accessory-protein-UreD
MRHPDFPSTLAAPPAWEASLRLRFAARAERSALVERRHQGPLLVQKPLYPEGSICHVVILHPPAGVAGGDSLDIDVTVGAGAHAVLATPGATKWYKSLGREAAQRVTLTLEARARVDWLPQENIVFDDAHARLATTVTVAPGASAIGWDAVVLGRQASGETWSRGTLGMQTRVQGGGKRALWIESAQLDAASALRQAVAGLDGLNVMGTLWAVGDGATQELAETLAEQLPYRPDLRAGVTRLEQDGQSMLLLRVLGAQMEAVRHLMATAWSALREPIHGVPARPLRLWAT
>NZ_CP010536.1|WP_043344774.1|1244711_1245404_+|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLQVNALNQFYGGSHILRNVTFEVPQGKLTTLLGRNGVGKSTLLKCLMGVVPTKSGSISWAGQALEKKPPYERVTAGLAYVPQGREIFPRLTVEENLLIGAASLKSPSGVPDRIYQLFPVLRSMRQRRGGDLSGGQQQQLAIGRALMSEPELLILDEPTEGIQPSIIQDIGRALRLLVDEFGMTVLLVEQYYEFARHLADHYVVMSRGEVVARGEGAKMEEEGVRELIAV
>NZ_CP010536.1|WP_043344773.1|1243829_1244678_+|urea-ABC-transporter-ATP-binding-protein-UrtD
MNAALGAQQAESGGTTGLGRVMEPGVIDVSHGPILYLEDVTVQFDGFRALNNLTLSIDHGELRCVIGPNGAGKTTMMDVITGKTGPRNANVSGRVFLGQSIDLMRMTEPKIAQTGIGRKFQKPTVFEQHEVWENLELATKGDKRWFTSLRARLGAQGHRRIEETLALTGLEDEAYRPAGLLSHGQKQRLEIGMLLMQQPQLLLLDEPVAGMTDEETMQLAKLLNSLRGTCSMMVVEHDMEFVAALAGDAGKVTVLAEGSVLAEGTLDAVKREERVIESYLGR
>NZ_CP010536.1|WP_043344771.1|1242627_1243833_+|urea-ABC-transporter-permease-subunit-UrtC
MKTSLPNSSTAGFRLAVPERQPLFSGRSWTALLMIALVVGIGVPVCALLVPEGHPMHLSAYALTLIGKIMCFALAAIALDLVWGYCGILSLGHGLFFALGGYAMGMYLMRSIGREGVYKSDLPDFMVFLDWKEMPWFWHGTEHLGYAMLLVVLVPGVLAWLFGFFAFRSRIKGVYLSIITQAMTYAAMLLFFRNETGFGGNNGFTDFKRVAGFAVAAPQTRTALFVLTFLALLAGFIACRYIVTSKLGRVVTAIRDAEMRVMFSGYNPLGYKLFVWTFSAVLCGIAGALYVPQVGIINPGEMSPANSIEMAVWVAVGGRGTLIGPIIGAFIVNGAKTMFTAYFAEYWLFLLGAMFVLVTLYMPDGVIGLLKRARAMRASPQAAPGNAATAPAAATRSGGEA
>NZ_CP010536.1|WP_082054979.1|1240990_1242628_+|urea-ABC-transporter-permease-subunit-UrtB
MHRPLSFSLASRLRAMLAALLLLAACPLWAAPLTQADLKPLAEDDFDAKTAAITALIKAPVAQAGPILKALQDDTLQYAPGVGMVRQDGDKLVDAISGTPVTVKPDALEALTLNNSLRAMVDSAASSTLLQSPDAAVRTQAVNTLLDQPGSASRPVVEAARKAEADAGLRSKLDVIWANIVLADGNRDDRLEAIRILGRDSNPQSRQKLQPLLEKDAAGNFREPDAELRGAAQQALDALRGDQRRAELIGNLFAGLSLGSVLLLAALGLAITYGLIGVINMAHGEFLMIGAYATYMVQGVFRAHFASAFDWYLLFALPASFLASAVVGFVLERLVLRHLYGRPLETLLATFGVSLLLMQAVRTLFGAQNVEVANPSWMSGGIEWLPGMVLPYNRMVIIVFALAVVAVAWAVLNRTRLGLFVRATTQNRTMAACVGVRTWKVDSYAFAFGAGIAGLGGCALSQIGNVGPDLGQAYIIDSFMVVVLGGVGQLAGTIIGAFGLGLINKFIEPFYGAVLAKIFVLVLIVLFIQKRPQGLFALKGRSAEA
>NZ_CP010536.1|WP_043344783.1|1251002_1251695_+|urease-accessory-protein-UreF
MTQLSQLISLLHLASPALPIGGFSYSQGLEAAIECGMVRDAGSAEQWVRSNLLDVQAQCEAPVWLLLYRHWRTLDATRLAEWNDWFHATRESAELRLETEQMGWSLARLVAQMEWGDAALRVQLAVLSPVCLPTAFAAACVALDVNERDGLAAYCFSWAENQVSAALKAVPLGQVAGQHILRRLHPAVLETVDEAVRRAAAEPPLLSTFSPMLGLLSARHETQYSRLFRS
>NZ_CP010536.1|WP_043351446.1|1251746_1252376_+|urease-accessory-protein-UreG
MTQARTKKNPPLRVGVGGPVGSGKTTLLEMLCKAMRERYDLVAITNDIYTKEDQRLLTISGALPAERIMGVETGGCPHTAIREDASINLEAVDRMLGKFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPYVGANLEVMESDARKMRGARPFVMGSVKSGQGLAEVIAFIERQGMLGV
>NZ_CP010536.1|WP_158408262.1|1252507_1252684_+|hypothetical-protein
MTFPSLAPSWLCRTTDTGGVAARAGAELPAGLASTSGASSISASISFSFSIIRIIRGR
>NZ_CP010536.1|WP_043344784.1|1252785_1253805_+|threonine/serine-dehydratase
MSDLSDLRAHARYPSLPEIQSTARRLQGKVLETPVWRWQTGAALQLDAGTQVWLKLELFQITGTFKVRGALNSIEHMDASARARGVVAASAGNHAMAVAYAAKVAGVGAKLAMPATASPARVAACREAGAEVLLLPDVHAAFAHALQLVADEGRTMVHPYDGPLIAQGTATVGLELMRQVAGLDAVVVPVGGGGLCGGIAAAVKQINPACRVYGVEPEGADAMNRSFEAGRPQTLERVATVADSLGAPYALDYSYGVCRQFVDGMVRVSDEAIRAAMRILYRDMKLATEPATAVSTAALLGPLRQTLAGKKVALIVCGSNLDAARFAELLAVDEPAGAS
>NZ_CP010536.1|WP_043344785.1|1253816_1254206_-|helix-turn-helix-transcriptional-regulator
MVADPLKRFGLHLAELRKQRGWSQEKLALESGMARSYLSGIERGVRNVSLINICALAGTLGVDASEMLNFSEADSGGRGGALVLEQRCAEFNITPAQRVTVRHMALMTDAEQDVIASVARTIAVRAVQA
>NZ_CP010536.1|WP_043344786.1|1254620_1255382_+|hypothetical-protein
MRIFSLFDAQMRGEILTGGTASQLRVGLQVRVVPEAAGLGSSGDYIFLRQGAMQSGIVTTRAEWWACLHGTIKLTPVGGEPVLVSVGGVYALRQAERVHLAALQDTVLIRAILDPNAVGLVGAGVTSSYDAFAEGQADLWQADGAQHGEHDVPRANAAFVCLAEGEPEWALRLRAAGLNWAACHAGTLCLQWHSPWPHVERQVAYLQPGMVFAPDADEAYRIEALHPAASLLCCLQAPARVAGAGEMQVVSLH
>NZ_CP010536.1|WP_043344788.1|1255415_1256108_-|glutathione-S-transferase-N-terminal-domain-containing-protein
MIDVYSWPTPNGHKIHIMLEECGLAYKVHPINIGAGDQFGEDFLKISPNNKIPAIVDPDGPDGKPISLFESGAILLYLAGKTGKFLPEDVRGKYDALQWLMFQMGGVGPMLGQAHHFRMYAPQQIEYAINRYTNEAKRLYGVIDKQLSEHAWLAGSEYSVADIATFPWLRSWQNQGVELDDYPHLKRWFLEIAERPAVQRGVAVLAQERKPLSGDKEREILFGATQYQRR
>NZ_CP010536.1|WP_043344790.1|1256296_1257559_-|acyl-CoA-dehydrogenase-family-protein
MQFEYTPKVKEMQARLLAFFDKHIYPNEKRFYAEIQANRQAGNAWVPTKVIEELKPLAREAGLWNLFLPHSKRAPEGLSNLEYAPLCEIMGRVPWSAEVFNCAAPDTGNMETLERYASDELKDRWLEPLLRGEIRSAFLMTEPAVASSDATNICCSIRRDGDEYVINGTKWWSSGAGDPRCEVYIVMGKTDPEAGRHEQQSMIVVPADTAGITIKRFLPVFGYDDAPHGHMEIELKDVRVPAANILLGEGRGFEIAQGRLGPGRIHHCMRSIGVAERALELLCKRALSRVAFGKPVAAQGVTRERIAEARCEIEMARLLTLKAAYMMDTAGNKVAKAEIAMIKVVAPNMALKVIDWAIQVHGAAGVSDEFPLANWWAHQRTLRLADGPDEVHRNAIAKLELAKHMGVSSDDINMPVTRGF
>NZ_CP010536.1|WP_043351448.1|1257751_1258687_+|LysR-family-transcriptional-regulator
MQLSRIDLNLFVVFDAIYSEGSITAAARQLNLTQPAVSHALGRMRLLFDDPLFERRGQGMAPTPLARSLATEVRTALQSFARTLQDTPHFDPAATVRRFTIGMRDALESTLLPPLMARVTAMAPQVEIAAIRFDRREMESELLAGTLDAAIDILLPVSPAIHHTPFMADPMVVLARRDHPLMKKELTLERYLAAEHVHVSSRRRGAGLEDQALHRMGLTRRVRLRCQHYAAACRVVSCTDLLATLPLRYARIANEPYANRLLSLPFKVPTLELHLYWHAGGENDGANRWLREQLLAVINALGGGVGEVAQD
>NZ_CP010536.1|WP_043344793.1|1258712_1260221_-|hypothetical-protein
MSADERFIAGEDRLAALLRELPAFVPPASLEASVLAAARAEQAARNAPAPLPPASLPAKVRAYAEQAEAPADDDELDFTPPAGLQASVMAQAARIQAAQATRRNAVLEEIRRGDVPQSVLGAPVSEAAQAWLREQALSAQPAEGEASTGKPPRARPARRWWPALGALAATLGVGVLSLQIVMRQLDLRNGEITLPAQAPAPVADTADKADKADKAANKPAKQAEPAKPVAQAAVQPAAPAPVPQAESAGQPASPRADAPVPPPAAQATNATKAAQPAPAPASPPATANAQPLRPPPAEAPAEAAPREPDRLAQRRAPEPRENAAGMAGSLSAGAPPAAAAAPAVRVPAPMASMAPIAPMAAIAPPAPIAPIAPPAPAPTFDAPRLALRASPSQQADAARAPAPAARVQRVGTLTMSLREEPQLAVERLLSAPSGAEPAAGAQLALRVTASAPASPEVRAWVERLWQAVPAPYRPPLPYAVQADSTLPPATVRIERQADSAPW

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Crispr_ID: NZ_CP010536_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010536_2

3234232-3234332

Orphan

Consensus_repeat	Method
ACCAACAAGGACGGCTATGTGCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP010536_2

>merge|NZ_CP010536|2|3234232-3234332|CRISPRCasFinder
ACCAACAAGGACGGCTATGTGCCGGACCCTCAGCGCACGACCAATAAAGACGGCTACGTACCCGACGCCGAACGCGCTACCAACAAGGACGGCTACGTGCC

>NZ_CP010536|2|2|3234232-3234332|CRISPRCasFinder
ACCAACAAGGACGGCTATGTGCC	GGACCCTCAGCGCACG
ACCAATAAAGACGGCTACGTACC	CGACGCCGAACGCGCT
ACCAACAAGGACGGCTACGTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010536.1\|WP_043348295.1\|3246057_3246987_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|182567
NZ_CP010536.1\|WP_043348277.1\|3239566_3240016_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP010536.1\|WP_052494640.1\|3223566_3224106_-\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|341122
NZ_CP010536.1\|WP_043352154.1\|3224204_3225146_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|376360
NZ_CP010536.1\|WP_043348281.1\|3240146_3240359_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP010536.1\|WP_043348288.1\|3243035_3243839_-\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_CP010536.1\|WP_043348292.1\|3244087_3245998_-\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP010536.1\|WP_006158977.1\|3228686_3229097_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP010536.1\|WP_052494641.1\|3227965_3228628_-\|TonB-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|275319
NZ_CP010536.1\|WP_043348269.1\|3234763_3237040_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP010536.1\|WP_082054909.1\|3230979_3232617_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP010536.1\|WP_043348263.1\|3233332_3233800_+\|membrane-protein	unknown	unknown	unknown
NZ_CP010536.1\|WP_043348260.1\|3229112_3230912_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|227622
NZ_CP010536.1\|WP_043348284.1\|3240470_3241745_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224992
NZ_CP010536.1\|WP_043352163.1\|3232943_3233276_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010536.1\|WP_043352164.1\|3241929_3242970_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP010536.1\|WP_082055021.1\|3226115_3227879_-\|putative-porin	unknown	unknown	gnl\|CDD\|374891
NZ_CP010536.1\|WP_043348257.1\|3225337_3226105_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378817
NZ_CP010536.1\|WP_043348298.1\|3246983_3247274_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP010536.1\|WP_043348273.1\|3237526_3239341_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551

Protein	Function_ID	Function_description	E-value
NZ_CP010536.1\|WP_043348295.1\|3246057_3246987_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|182567	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase.	5.22204e-85
NZ_CP010536.1\|WP_052494640.1\|3223566_3224106_-\|YbjN-domain-containing-protein	gnl\|CDD\|341122	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones. This YbjN protein family includes Escherichia coli YbjN, Erwinia amylovora AmyR, and similar proteins. YbjN proteins share a class I type III secretion chaperone (T3SC)-like fold with type III secretion system (T3SS) chaperone proteins but appear to function independently of the T3SS. YbjN is an enterobacteria-specific protein. In E. coli, it acts as a sensory transduction regulator that may play important roles in regulating bacterial multicellular behavior, metabolism, and survival under stress conditions. E. amylovora AmyR, a functionally conserved ortholog of E. coli YbjN, is a stress and virulence associated protein that regulates the ams operon. Ams proteins are required for amylovoran biosynthesis. AmyR may also regulate the Rcs phosphorelay system, an atypical two-component signal transduction (TCST) system present only in Enterobacteriaceae and positively regulates amylovoran biosynthesis by activating the ams operon transcription.	7.16071e-10
NZ_CP010536.1\|WP_043352154.1\|3224204_3225146_-\|peptidylprolyl-isomerase	gnl\|CDD\|376360	pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline.	3.10844e-20
NZ_CP010536.1\|WP_043348281.1\|3240146_3240359_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	7.30522e-16
NZ_CP010536.1\|WP_043348288.1\|3243035_3243839_-\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	1.2823e-151
NZ_CP010536.1\|WP_043348292.1\|3244087_3245998_-\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP010536.1\|WP_006158977.1\|3228686_3229097_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	3.40555e-36
NZ_CP010536.1\|WP_043348260.1\|3229112_3230912_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|227622	COG5306, COG5306, Uncharacterized conserved protein [Function unknown].	4.59171e-53
NZ_CP010536.1\|WP_043348269.1\|3234763_3237040_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP010536.1\|WP_082054909.1\|3230979_3232617_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.25305e-78
NZ_CP010536.1\|WP_052494641.1\|3227965_3228628_-\|TonB-C-terminal-domain-containing-protein	gnl\|CDD\|275319	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein. Members of this family are putative virulence proteins of Mycoplasma and Ureaplasma species. Members share a region of sequence similarity (see TIGR04524) with protein M, a Mycoplasma genitalium protein that binds a conserved light chain region of IgG and blocks its protective function of antigen-specific binding. The seed alignment for this model includes an N-terminal signal-anchor domain and a proline-rich linker domain, and a C-terminal extension, in addition to the protein M-like domain recognized by TIGR04524. [Cellular processes, Pathogenesis].	3.94854e-07
NZ_CP010536.1\|WP_043348277.1\|3239566_3240016_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	1.17088e-59
NZ_CP010536.1\|WP_043348284.1\|3240470_3241745_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224992	COG2081, COG2081, Predicted flavoproteins [General function prediction only].	1.48637e-172
NZ_CP010536.1\|WP_043348273.1\|3237526_3239341_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP010536.1\|WP_043352164.1\|3241929_3242970_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP010536.1\|WP_082055021.1\|3226115_3227879_-\|putative-porin	gnl\|CDD\|374891	pfam16930, Porin_5, Putative porin.	0
NZ_CP010536.1\|WP_043348257.1\|3225337_3226105_-\|hypothetical-protein	gnl\|CDD\|378817	pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.	0.00363661
NZ_CP010536.1\|WP_043348298.1\|3246983_3247274_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	1.47669e-22

>NZ_CP010536.1|WP_043348263.1|3233332_3233800_+|membrane-protein
MPFIIAGLALIGALIYGAVRLYATVAAAYGAIAGTAAVLFCAALLVAFVASLVRRYRAIHGVKIKGERILSLEGEWGTMRVDPERKRGALDVDGQQAKFIFADIASAAALENGTAWMLALRLEHQAQDSWQIPMASRKEALRWAKIFDLAAVQKL
>NZ_CP010536.1|WP_043352163.1|3232943_3233276_+|hypothetical-protein
MRGWLNAVVIAAGSLGAACPLLAAEVSPPTGDGTARCVEVEVNGMRAPSFPCLTQKLSPKPAPGQPPSERKLASEAIVERPSNALGLFNYSATSHRMGNTFGTSVTPQRP
>NZ_CP010536.1|WP_082054909.1|3230979_3232617_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MHDKNKNDASARWRALCLAVLGLGTQGTAMAQAPAATEAATPGVQADAQRRVDINEYIVRGNTVLDARAIERAVTPYLGPKRTMKDIEGARDALLAAYQAKGFQSVYVDLPEQQAVGGVVFLQVSETKVGRVRVVGAQYNSPVEVREQVPALAPGTVPDFNQAQTELTALNRTANRQVMPLVKQGALPGTMDVDLKVEDSSPWRASVGLNNDYSADTKQLRATASLGHDNLWQLGHSASVSFFGAPQDLNQTQVWSGSYVAPLRGTNWGLEASGYKSDSNVATTGGTNVLGKGHAVGVKATYTVPNTGAWWHAFSAGVDFKDNEEVTRLGSTGNTVPLKYAPITLGYSGFGQTERGTYGLNLSLVAGTRSFLGYGSTALQFDNKRYKASPSFMVLKGDTNGAYTFAGNAQLGWRLAAQITDSPLVSNEQIAAGGMNSVRGYLSAESTGDYGVVGSVEMRTPPLAFFTSVVENWRAYLFADAGQVRLRDPLPEQNSNFSLASVGVGTTFRLGQKVTGRLDLGYPLKDGPRTQRGDPRVNFSVTASY
>NZ_CP010536.1|WP_043348260.1|3229112_3230912_-|MotA/TolQ/ExbB-proton-channel-family-protein
MRRILLLVLTLLSTLLPDLAHAWWQPDWAYRKPITIDAGPKAGAIGGDAGRTPVLLRLHTGNFSFEGVSETGADLRFVAADDKTVLNHQIEQFDPLLGIALIWIDVPSVSAAGPQQLWMYYGNAKAPASGNGQRTFDPDYTLVYHFAEGSVPARDTTAYGNHSQTAVVSVDGTVIGKGAQLGAAPLVLPSSPSLAQAAGAPFGFSAWVRPEKLGPQQVVYARRDGAGELVIGIDQGVPFVQVNGQRSNPGQPVQAGQWSHLAVKSDGKSVSLYVGGRPAASLATALPALNTPATLGADAAAGAAPNAPAAATALSPFSGAIDEVRLSKVARPDALILADAVSQGAESRLAVFGADEQQAGKSHFGFILAAMPLDAWIVVGLLGIMMALSWAIMISKGRSYGATSRANAAFMVHFREAAGAPLDQLAKSNRVPEAVKADSSLWRLYEMAVEELHRRHQMGYDLNAVSDATISAIRAAMDGVMVRESERMAKRMNWLSTTIEGAPYVGLFGTVIGIMLVFVVAAMAGAVDINSVAPGMAAALLCTAAGLGVAIPALFGYNWLASRSDSIGADMAVFVDEFATRLAEEQGEGRRVPAALHRA
>NZ_CP010536.1|WP_006158977.1|3228686_3229097_-|biopolymer-transporter-ExbD
MAYAAKFGTKKRTGGINITPFVDVLLVVLVIFILTSNASIPGIKVDLPKASSSVALEKPKTKAITIDNAGQVFLDAYPVTLPELEERLRTEKALTPDFPVIVRGDAAVQYAKVVEVLDLLRRIDLNQIGLVTGKPA
>NZ_CP010536.1|WP_052494641.1|3227965_3228628_-|TonB-C-terminal-domain-containing-protein
MWRRWGGLIIGALVIIGLAVLVWRLLSDTVSTKREVAATPMLVLPPPPPPPPELEKPPEPVPEKVKPEVIEPEPKPADPQEAPKDDAPPSPSKDLGDPVTIDGAAQAGTDAFGIQAGRGGGMTGGGGGLGSRSYASYVSGALQQAFARDQRTRQLAFEDIRIELWLDADGRATRVLLVRGTGNAQTDEAVLAMVRDFRADERPPASLRFPMRMSIKGRRP
>NZ_CP010536.1|WP_082055021.1|3226115_3227879_-|putative-porin
MNHPANSRRHAQPARKTHALAAATAIALLGASGAGYAQSAAPADSTMVKLIRGLMQSGALKKDAGEALLAQAQTEAMAQQQAQRLASASATAAGGMRVEPGDVRVPYISDTVRDQIRDEVKGQVMAQAQAEGWAAPNETPEWTKRIRIEGDVRVRDESRFYSSNNSDIAIDWAAINQSSGFDVNPNTNLSLPPLVNTRQNRVSLLRARARFGVLADISDSTHAGIRIATGNDDSPVSTNQTLGGGLAKKNVWLDQGWLSYKPAEWVNLTAGRFGNPFVSSDLLFSNDLNFDGLAAQFDKALPNRDVALFGTLGLVPLEYSSDSFPSRSQNKASSEKKWLLGAQIGASWKLNNDNRLRGALAYYDFRNVSGQVSQPCALYAGADGCSTDWSRPAFMQKGNTLMLLRNIALNPLDPAGTPQPQYVGLASKFQLLDLNFRWETKVAGSLGLRMDANYIRNLAYDEGGMFSRANGGIVNNFGGSGGTSRADFKSGGNAYMFQATLGKPVTLARGDWNMLLGYKRIEPDAMPDGYNDSTFHLGGTNARGYYVGGSYALDKNTWVTGRWTSTKEVYGPPLAIDILQVEINTRF
>NZ_CP010536.1|WP_043348257.1|3225337_3226105_-|hypothetical-protein
MSSTSRLRGAWRPLALAASFMMAGAAAHAQPAQTMEERLRAQLRVTTTQLQQAQNELAALKAGAPHVGAAPSGADADAKKELERARAQLAAERQERERLSDRNQQAQQQAQAVAEKASTQIAQYRNAYDELLKLARAAEADRQRLALEAKAQHATVAQCEAKNAKLYAVGQEILRAYETVDLGTVMIARQPFAAQSRVKFEQIAQEYGDKLYEGRFAAGAAAAADAPAQAAADVNAAASTTSTTSTTGAAEAPRP
>NZ_CP010536.1|WP_043352154.1|3224204_3225146_-|peptidylprolyl-isomerase
MKSHAQSMLPPVRAAIGVLLASWLSAAPVQAAEPATASGPVVARAGSVTVGQDDVERLLQGLPEADRAAARSNRAGIENWLRQRLASEALLREAQGKGWAERPEVKARVDAAMREISARIVASTYLESVAQLPAGYPSEPEVNAAYEGGKANFQVPASYRVAQIFLATQGSDAAATAKVRDEARKLATQARQGDFAALAKSRSQDPRGAERGGEVGALPLAQMLPEVRDTVARLKVGQVSDPVQSAAGFHVMKLLDTQAGRIATLDEIKPQLVAAMRQQRQQQLVQAYMARLVAPGAASIDTAALDAVLHKAN
>NZ_CP010536.1|WP_052494640.1|3223566_3224106_-|YbjN-domain-containing-protein
MNTTATQIDTSADSQPALLMAVTSEQVGDAIKAAGCAVTAIEQDGVLRLHSASHGVGFQVLWGNSLAPDAYLDFTLSCPLRVQGGALPECVLGDWHRAKRFARVAQHGEFLVLEMDVVISGGVGPDYLTVALQLWTQMMGQFFLHLRNFQPAVSDAVAGADATGDATADAPAQEEAAAA
>NZ_CP010536.1|WP_043348269.1|3234763_3237040_-|RNA-polymerase-sigma-factor-RpoD
MKGKSITVAKQQNTEVESKKAAATSAKTGDAKPGAAEPEATPNATTSAPVASERPAAPAVKPEPKKRGRKPKAGAQRDDSTPDDVTEELYEDEIPAAATPTAAPKSDKQKARDRKAKEKALLKEFASTQQGTEEELEVRRQKLKALIKLGKSRGYLTYAEINDHLPDDMVDSETIDTLVATLNDIGIAVYEQAPDAETLLLNDNAPSATSEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDMVMAISACPVTISEILALAERVASDEIKIDEFVDGLIDPNAADVPVAPPAPAVVAAAEEDELESDGEESDEDEDEDAGGLAASARQLEELKLAALEKFRVIAEQFDKMRRSFEKEGYKSKSYVKAQEAILNELMSIRFTARNVERLCDTLRGQVDEVRKLERSILKIVVDKCGMPRADFVARFPGNETNLEWIDTIIKDGKPYSTIVERNVPAVRELQQKLIDLQMRVVLPLKELKEVNRKMSEGEKRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEAALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGS
>NZ_CP010536.1|WP_043348273.1|3237526_3239341_-|DNA-primase
MIPQSFIQDLLNRVDIVDVVGKYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFGCAAHGSAIGFLMEYSGQSYPDAVRELAQSVGLSVPEERDRLAPAQRAEVQARSLALSDAMTRATEFYRKQLRSAPQAIQYLKSRGLTGEIAAQFGLGYAPDDWQGLEPVFGNYRDDAIAGPLVEAGLMIESAEKRDADGKPRRYDRFRDRIMFPIRSTKGQVIGFGGRVMGQGEPKYLNSPETPLFSKGTELYGLFEARHAIRETGYVLVVEGYMDVVALAQLGFANAVATLGTACTAVHVQKLLRQTDAVVFSFDGDAAGRRAARRALEACLPYVADNKTIRFLFLPAEHDPDSYVREQGTDAFAAQVRDAMPLSRFLLQVVSEGQELRQAEGRARAQYEAKPLLQSMPAGGLRLQIVRELADATGTTPAEIEAVCGLASDPARVGRFAQPRPRTKRQAPTGLEQRVLQLLMRYPQLSSRLDADSRALLLEDEQADAEVLAHLVSACDELRGEVNFAAFSEHLAQSPYAEVYANVRAAVLREEIDEEPAEQEFDTAIAKLLAGPLRRELDMLQQSVIMGTADEQGKSRMRWLVSEINRRRQLG
>NZ_CP010536.1|WP_043348277.1|3239566_3240016_-|GatB/YqeY-domain-containing-protein
MSLKARVTEDMKAAMRARETERLGTIRLLLAAIKQREVDERIELDDTAVQAVIEKLIKQRKDSISQFTQAGRTDLADKESAEIEVLKVYMPAALSDAEVAAEVQAAVTETGATGPQDMGKVMAVLKAKLAGRADMTAVSGLVKAALAGR
>NZ_CP010536.1|WP_043348281.1|3240146_3240359_-|30S-ribosomal-protein-S21
MTTIHLKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAEKRHYKRIRSLMLPKKMY
>NZ_CP010536.1|WP_043348284.1|3240470_3241745_-|NAD(P)/FAD-dependent-oxidoreductase
MGSKQTTEAGQAGARAGRFDVAVLGAGAAGMMCAAVAGQGGASVVLIDHATKVAEKIRISGGGRCNFTNLQAGPANFLSANPHFCRSALARYTPQDFLALMRKHEIDWHEKHRGQLFCNDSAEQVIEMLRAECGEGNVHWRTGCGVDEVRREGDDFLLMTASGPVRAGALVVATGGLSIPKIGATDIGYRIARQFGLGVVETRPALVPLTFDGQGWAPFVPLAGVSMEVDIATGSGKTAGAFREDLLWTHRGLSGPAVLQISSFWRPGTPITIDLFDGNDASEWLLEQKGGSRKHLANLLAERLPARLADAWCAAAGLNGAQPLHDMPDKALRRLGAALNSWQLVPAGTEGYRKAEVTLGGVDTRALSSATMMARTVPNLYFIGEVVDVTGWLGGYNFQWAWASGVAAGQAVAENARAMVAGTA
>NZ_CP010536.1|WP_043352164.1|3241929_3242970_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MLVLGIESSCDETGLALYDTQSGLLAHALHSQIAMHRDYGGVVPELASRDHIRRVLPLLQQVLDEAGRTRADINAIAFTQGPGLAGALLVGASVANALGFALNVPMLGVHHLEGHLLSPLLTANPPPFPFVALLVSGGHTQLMEVRGIGDYALLGETLDDAAGEAFDKTAKLLGLSYPGGPEVSRLAEFGVPGTYALPRPMLHSGTLDFSFAGLKTAVLTQTRKLGNVCEQDRANLARSFVDAIVDVLAAKSMAALKQTGHRRLVVAGGVGANRQLRERLNQLGAQKKIEVYYPDLAFCTDNGAMIAFAGAMRLQAAPELAKRDYGYGVTPRWELSDIRLPERPAA
>NZ_CP010536.1|WP_043348288.1|3243035_3243839_-|GTP-cyclohydrolase-I-FolE2
MNDINPAFVMPDVQSSLDTRQIPIQRVGVKGVRYPLSLKTPAGVLATVGTFNLDVHLPADQKGTHMSRFVALLEEEREPLELASFRTLLDKMLLKLEAEAGRIEVTFPYFINKTAPVSGVQSLMDYEVTLIGEVRNGATKVFLKALVPVTSLCPCSKKISQYGAHNQRSHITMNVELAADLPVEALVRMAEEEASCELWGLLKRPDEKFVTERAYENPKFVEDLVRDIAMRLNADDRIVAYVLEAENFESIHNHSAYAVIERDKRAQ
>NZ_CP010536.1|WP_043348292.1|3244087_3245998_-|1-deoxy-D-xylulose-5-phosphate-synthase
MTYALLKTIDDPAALRRLDRRQLKTLADELRAYVLESVSQTGGHLSSNLGTVELTIALHYVFNTPDDRVVWDVGHQSYPHKILTGRRDRMHSLRQWGGISGFPRRSESEYDTFGTAHSSTSISAALGMALGARTLGEKRVSIAVIGDGAMTAGMAFEAMNNAGVYKDLPLLVVLNDNDMSISPPVGALNSHLARLMSGKFYAATKKGIERVLSVAPPVLEFAKRFEEHAKGMMVPATLFEEFGFNYIGPIDGHDLESLVPTLQNIRQRALEGGGPQFLHVVTKKGQGYKLAEADPILYHGPGKFNPAEGIRPSTKPARKTYTQVFGEWLCDMAAADPKLVAVTPAMREGSGMVEFEKRFPSRYYDVGIAEQHAVTFAGGLACEGLKPVLAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGLVGADGATHAGAYDIAFLRCIPNMMVMTPADENECRQLLTTAYQQDCPTAVRYPRGAGTGVATGAALTALPVGKGEMRRTGGARAGQRVAFLAFGSMLHPALGAAEALDASVANMRFVKPLDEELVKKLASEHDYLVTVEEGCVMGGAGSAVLEALAAAGIAMPVLQLGLPDRFVDHGDPAFLLSQCGLDAKGIEQSVRERFNLAQPAVATRAA
>NZ_CP010536.1|WP_043348295.1|3246057_3246987_-|polyprenyl-synthetase-family-protein
MSESHQTTEATEAGDFAAWMRATGARTEAALDAGLPAAQTVPCTLHEAMRYAVLGGGKRVRPLLVHAAGEVAGAAPEACDAAASAVEMIHAYSLVHDDMPCMDDDDLRRGRPTVHKAYDEATALLVGDALQTQAFVVLAESALLASLDAAARLRLVAELARASGSVGMAGGQAIDLQHVGLAMSLEELEGMHRMKTGALLRASVRMGACCGAVDEAGLAALDRYAAAVGLAFQVVDDILDVTADTATLGKTAGKDAANDKPTYVSLMGLEPARQLAQQLRATAHEALAVFGARARRLGELADLIVLRSN
>NZ_CP010536.1|WP_043348298.1|3246983_3247274_-|exodeoxyribonuclease-VII-small-subunit
MPKTTSSPAQADPAATDQRSASAPPASYEAAMAELEALVASMEGGALPLEDSLAAYKRGAELVRYCQQMLERVEQQVKVLEGDVLKPMAADAGDLE

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Crispr_ID: NZ_CP010536_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010536_3

3807863-3807963

Orphan

Consensus_repeat	Method
TGCTCGGCGGGCTGATGGGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010536_3

>merge|NZ_CP010536|3|3807863-3807963|CRISPRCasFinder
GCCTTGGCGGACTGCTCGGCGGGCTGATGGGCGGCGGCGCGGCCGGTGGCGCACCAGGCGGCCTGGATCTGGGCGGATTGCTCGGCGGGCTGCTGGGCGGC

>NZ_CP010536|3|3|3807863-3807963|CRISPRCasFinder
GCCTTGGCGGACTGCTCGGCGGG	CTGATGGGCGGCGGCGCGGCCGGTGGCGCACCAGGCGGCCTGGATCTGGGCGGAT
TGCTCGGCGGGCTGCTGGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010536.1\|WP_043349566.1\|3803337_3805374_-\|transketolase	unknown	unknown	gnl\|CDD\|183723
NZ_CP010536.1\|WP_043349570.1\|3806413_3806854_+\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|225356
NZ_CP010536.1\|WP_043352319.1\|3817124_3817826_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NZ_CP010536.1\|WP_043349592.1\|3816138_3817101_+\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213369
NZ_CP010536.1\|WP_043349563.1\|3802241_3803240_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP010536.1\|WP_043352318.1\|3813991_3814489_+\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_CP010536.1\|WP_043349561.1\|3800968_3801958_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176155
NZ_CP010536.1\|WP_043349577.1\|3808340_3808940_-\|barstar-family-protein	unknown	unknown	gnl\|CDD\|376530
NZ_CP010536.1\|WP_043349554.1\|3798841_3799639_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP010536.1\|WP_043349572.1\|3806853_3807612_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP010536.1\|WP_043349568.1\|3805504_3806341_+\|spermidine-synthase	unknown	unknown	gnl\|CDD\|234843
NZ_CP010536.1\|WP_043349586.1\|3812300_3813281_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP010536.1\|WP_043349594.1\|3817918_3818794_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP010536.1\|WP_043349580.1\|3808936_3809305_-\|ribonuclease	unknown	unknown	gnl\|CDD\|238340
NZ_CP010536.1\|WP_043349588.1\|3813386_3813953_+\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|368021
NZ_CP010536.1\|WP_043349556.1\|3799702_3800266_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|367908
NZ_CP010536.1\|WP_043349583.1\|3809701_3812026_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|183799
NZ_CP010536.1\|WP_043349559.1\|3800465_3800897_+\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
NZ_CP010536.1\|WP_043352317.1\|3796058_3798695_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP010536.1\|WP_043349590.1\|3814536_3815355_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651

Protein	Function_ID	Function_description	E-value
NZ_CP010536.1\|WP_043349566.1\|3803337_3805374_-\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NZ_CP010536.1\|WP_043349570.1\|3806413_3806854_+\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	gnl\|CDD\|225356	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown].	1.91305e-29
NZ_CP010536.1\|WP_043352319.1\|3817124_3817826_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	5.36222e-116
NZ_CP010536.1\|WP_043349592.1\|3816138_3817101_+\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213369	cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup. A bacterial subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Mg2+ transporters Escherichia coli CorA and Salmonella typhimurium CorA (which can also transport Co2+, and Ni2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.82092e-160
NZ_CP010536.1\|WP_043349563.1\|3802241_3803240_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP010536.1\|WP_043352318.1\|3813991_3814489_+\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	1.46397e-72
NZ_CP010536.1\|WP_043349561.1\|3800968_3801958_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176155	cd08466, PBP2_LeuO, The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold. LeuO, a LysR-type transcriptional regulator, was originally identified as an activator of the leucine synthesis operon (leuABCD). Subsequently, LeuO was found to be not a specific regulator of the leu gene but a global regulator of unrelated various genes. LeuO activates bglGFB (utilization of beta-D-glucoside) and represses cadCBA (lysine decarboxylation) and dsrA (encoding a regulatory small RNA for translational control of rpoS and hns). LeuO also regulates the yjjQ-bglJ operon which coding for a LuxR-type transcription factor. In Salmonella enterica serovar Typhi, LeuO is a positive regulator of ompS1 (encoding an outer membrane), ompS2 (encoding a pathogenicity determinant), and assT, while LeuO represses the expression of OmpX and Tpx. Both osmS1 and osmS2 influence virulence in the mouse model of Salmonella. In Vibrio cholerae, LeuO is involved in control of biofilm formation and in the stringent response. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.41592e-53
NZ_CP010536.1\|WP_043349577.1\|3808340_3808940_-\|barstar-family-protein	gnl\|CDD\|376530	pfam01337, Barstar, Barstar (barnase inhibitor).	9.8554e-31
NZ_CP010536.1\|WP_043349554.1\|3798841_3799639_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	1.28493e-132
NZ_CP010536.1\|WP_043349572.1\|3806853_3807612_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	4.49362e-90
NZ_CP010536.1\|WP_043349568.1\|3805504_3806341_+\|spermidine-synthase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	6.22488e-83
NZ_CP010536.1\|WP_043349586.1\|3812300_3813281_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	1.73803e-138
NZ_CP010536.1\|WP_043349594.1\|3817918_3818794_-\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	5.84476e-125
NZ_CP010536.1\|WP_043349580.1\|3808936_3809305_-\|ribonuclease	gnl\|CDD\|238340	cd00607, RNase_Sa, RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.	1.41372e-47
NZ_CP010536.1\|WP_043349588.1\|3813386_3813953_+\|phosphatidylglycerophosphatase-A	gnl\|CDD\|368021	pfam04608, PgpA, Phosphatidylglycerophosphatase A. This family represents a family of bacterial phosphatidylglycerophosphatases (EC:3.1.3.27), known as PgpA. It appears that bacteria possess several phosphatidylglycerophosphatases, and thus, PgpA is not essential in Escherichia coli.	5.70641e-48
NZ_CP010536.1\|WP_043349556.1\|3799702_3800266_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|367908	pfam04355, SmpA_OmlA, SmpA / OmlA family. Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).	1.29933e-33
NZ_CP010536.1\|WP_043349583.1\|3809701_3812026_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|183799	PRK12862, PRK12862, malic enzyme; Reviewed.	0
NZ_CP010536.1\|WP_043349559.1\|3800465_3800897_+\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	5.67623e-60
NZ_CP010536.1\|WP_043352317.1\|3796058_3798695_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP010536.1\|WP_043349590.1\|3814536_3815355_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	5.49696e-149

>NZ_CP010536.1|WP_043349572.1|3806853_3807612_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MPPRFFIDAALAAETDMPLPEAVVRHVQVLRLNPGDDITLFDGRGGSHAATLVEIGKRHALARIGSHDPFEAEPPFRVTLAQGLAGGDKMDWLIEKSVELGVAAIQPLQAARSVVRLSAERAQKRHAHWQALVEAACEQCGRNRLPEVAPVANVESWLGLQAKPAAAQEGARLLVSPRASQSLVSLATEQRNALLDRGVTLLIGPEGGLAPDEEAAALRAGFTGVSLGPRILRTETAGIACLATLNAVLGGF
>NZ_CP010536.1|WP_043349570.1|3806413_3806854_+|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein
MTRPANTPWLTPYLTVGNGRSALDFYHRAFGFSAGNVVDENGVPTHAEMHYQGELVVMFAPEGAWGSTARAPRSLGVECPQTFYVYCDDVDAMHARAVAAGAVSLMAPADQFWGDRYCMVEDPDGYRWGFGKPVDKTAGKNEDGSA
>NZ_CP010536.1|WP_043349568.1|3805504_3806341_+|spermidine-synthase
MGQIRLLAAMRSPYQQIEIGEHPRFGRIFRLDGRIMSAEADAFIQHELMVHPMAVAHGAARSALVVGGGDGGSAHELLRLPFMREVVVAELDPDVVTLARAWLDGIHQGAFEDPRVHLAIGDALGLMEAFGRAGRQFDLIVFDLTEADDGSPAAALFSSHGLHAARRCLAPGGVLSLHLGPPEHRPDSVSVLAARLRQCFAQVRPITTFIPVYGAQWAIALASDTLDVRGADAAQLDERLRAWKLDRKLRCYHAALHSALFALPLHLQALFDSACAPA
>NZ_CP010536.1|WP_043349566.1|3803337_3805374_-|transketolase
MSHLAHPAASPHASQPVQLMANAIRVLAMDAVQQANSGHPGMPMGMADIAVALWGRHLKHNPSNPKWADRDRFVLSNGHGSMLLYALLHLTGYDLPLAELKNFRQMHSKTAGHPEYGITPGVETTTGPLGQGLTNAVGMALAERLLGEEFNRPGFDIVNHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLVALWDDNGISIDGDVVHWFADDTPKRFEAYGWNVIRAVDGHDAAAVDAAIAEAKHSDRPTLICCRTLIGKGAPNKEGGHDVHGAPLGGAEILATREALGWAHAPFELPSEVYTAWDAKARGGSLEKAWNALFEAYAERFPYEAGEFQRRMRGELPGAFDAAVDAFLAKCEEKAETIATRKASQNTIEALAPVLPEFLGGSADLTGSNLTNWSGSKAVRGDAWGNHINYGVREFGMSAIMNGITLHGGYIPYGGTFLTFSDYSRNALRMAALMKIRTLFVFTHDSIGLGEDGPTHQSIEHVASLRLIPNMDVWRTADTTETAVAWAQAVRRENGPSCLIFSRQNLPFQKRDDTTRANIARGGYVLRAGNNPKTGRPDAVIIATGSEVGLAVGAADQLATDGVHVRVVSVPATTVFDKQDAAYKASVLPAGVPRVAVEAGVTDFWWKYQVQAVVGIDTFGESAPAGVLFKHFGFTVENVVRTVRDTLGQ
>NZ_CP010536.1|WP_043349563.1|3802241_3803240_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKIGINGFGRIGRMVFRAAAANFKEIEVVGINDLLEPDYLAYMLKYDSVHGRFDGEVSVDGNTLIVNGKKIRLTAVKDPSELKWGEIGADVVIESTGIFLTKEGAQKHIDAGAKKVIMSAPSKDDTPMFVYGVNHGTYKGEAIISNASCTTNCLAPVAKVLNDKWGIKRGLMTTVHATTATQKTVDGPSNKDWRGGRGILENIIPSSTGAAKAVGVVIPELNKKLTGMSFRVPTSDVSVVDLTVELEKGATYAEICAEMKAQSQGALKGVLGYTEDKVVATDFRGDARTSIFDAEAGIALDSTFVKIVSWYDNEWGYSNKVLEMARVVAK
>NZ_CP010536.1|WP_043349561.1|3800968_3801958_-|LysR-family-transcriptional-regulator
MVNVDTKLLVIFTELLSKRNATYVAEKMHMTAPAVSHSLGRLREIFDDPLFIRVPHGLTPTPRALELGPKIRDMLDLWSSINEGDADNFDPATATGTLNIGFAAELGDTVFNRFILRIKQLAPELHIKLVESHSWESDVAAMRGNELDLAFSPFPTRHPEIVEEMVTSLNLWVCARKNHPVLKGTCTLEQYLDCGHIFMAHSGGNGRPAPSLIPLDYALQQRGLKRNATLTVHSWRAQSELAAQTDMIFTVNALTKDMACETYGLKAFPLPAELNTTLGLNMFWHRSRNTHPMLVWARGLFRQVVGEFVGVPTVARGLHIVAEQDHTES
>NZ_CP010536.1|WP_043349559.1|3800465_3800897_+|ferric-iron-uptake-transcriptional-regulator
MPSPADLKNIGLKATVPRLKILEIFQTSEQRHLSAEDVYRILLNEQMDIGLATVYRVLTQFEQAGLLSRNNFESGKAIFELNEGKHHDHLVCIDCGRVEEFYDSEIERRQQSIATERGFALQEHALSLYGSCTKHECPHRPKR
>NZ_CP010536.1|WP_043349556.1|3799702_3800266_-|outer-membrane-protein-assembly-factor-BamE
MRSFRSSAMRPTLVTTVLAAATLLTAACSTYDNTSRKVANAITPYRINIVQGNFVSREAAAQLREGMTREQVKFLLGTPLLADVFHGNRWDYVFSFRRGNTPVVQQRRYTVFFDGDKLVKFGGDELPSEYELIAEIDGMKAMQAGKIPTPKAPAETGAAASEAAAAPAAPAAAASSAAAGGPASPTN
>NZ_CP010536.1|WP_043349554.1|3798841_3799639_-|4-hydroxy-tetrahydrodipicolinate-reductase
MNIAIAGASGRMGRMLIEHVLATEGVTLSGALDVPGAPALGQDAGLLLGRATGVVITSDIEAALAGADCLIDFTRPEGTLVHLAAARRLGVKVVTGTTGFDDAGRAAIAEAAKHIGVVFSANMSVGVNATFKLLEVAAKLLSSGYDIEVIEAHHRHKVDAPSGTALAMGEVVAKALGRDLKTCGVFAREGHTGPRDPNSIGFATVRGGDIVGDHTVMFAGTGERIEITHKSSSRQSYAEGALRAARFLADKPTGLFDMQDVLGLK
>NZ_CP010536.1|WP_043352317.1|3796058_3798695_-|leucine--tRNA-ligase
MQDKYLPSAVEQAAQQHWQAIDAYRVSEEAKLADGSEKPKFYACSMLPYPSGKLHMGHVRNYTINDMMARHLRMNGHNVLMPMGWDAFGMPAENAALNNGVAPAAWTYNNIAEMKRQMQSMGLAIDWSREVATCSPDYYRWNQWLFLKMLEKGIAYRKTGTVNWDPVDQTVLANEQVIDGRGWRSGALVEKREIPMYYLRITDYAEELLGDLDDLGWPERVKIMQQNWIGKSVGVRFGFTHAIAGDDGKLIGDGKLYVFTTRADTIMGVTFCAVAAEHPLATHAAATNPELAAFINECKHGSVMEADMATMEKKGMPTGLKVVHPLTGEQVEVWVGNYVLMSYGDGAVMGVPAHDERDFAFANKYGLPIKQVVDMVDAKKGQPFSTEAWQEWYGDKEHGTCIHSGKYDGLDYKAAVEAIAADLGAKGLGEKKITWRLRDWGISRQRYWGTPIPLIHCDGCGVVPVPEQDLPVVLPEDLVPDGTGNPLAKDPRFLACTCPSCGKPARRETDTMDTFIDSCWYYMRYTCPDAATMVDARNDYWMPMDQYIGGIEHAILHLLYARFWTKVMRDMGLVTFNEPFSNLLTQGMVLNDTYYREDAAGKKTWYNPAEVDVSTDERGRPLGAVLKADGQPVVIGGVEKMSKSKNNGIDPQALIDQYGADTARLFVMFAAPPEQQLEWSGSGVEGASRFLRRVWNYGYANAEAIAAAGNAVPSGDADAALRREIHGVLKQANYDYQRIQYNTVVSATMKMLNALEDAKQATPAARREGLGILLRVLYPVVPHITHGLWQELGYATQYGDLLDAAWPQVDESALVQSELDLVLQINGKVRGSLKVPAVADRAAIEAMAAASEIVARFAEGAAPKKIVVVPGRLVNVVL
>NZ_CP010536.1|WP_043349577.1|3808340_3808940_-|barstar-family-protein
MMTDIFGLGDALAAREERGAGDGWQRAQTQARNLYDNVLTMPRNELSQQPPLAPVPAAGTDGSQEGAMTLFKTVRPNIVQSIRAFRVPELAQAAAELGQHFLYANCAHCQSKAEVLETIATNFLFPKHFGKNFDALADCLTDLIYKAGPQPGFVIVLEGLPIAQKFDKEGREVLLDVFRDAADFWAERKVQFRVFYSFA
>NZ_CP010536.1|WP_043349580.1|3808936_3809305_-|ribonuclease
MASRVLAGVALSCALAQPVLARQAADDGTGTIAVQQLPNEAQSTLERIEAGGPFPYAKDGSRFGNYERALPQRSRNYYREYTVKTNSRNRGARRIVCGGDQRATNDCYYTDDHYNSFKRIAK
>NZ_CP010536.1|WP_043349583.1|3809701_3812026_-|NADP-dependent-malic-enzyme
MTSPQQPTPQDDLKQQQREALRKAALEYHEFPIPGKISVTPTKPLSNQRDLALAYSPGVAYACEEIVADPLNAFRYTARGNLVGVITNGTAVLGLGDIGPAASKPVMEGKAGLFKKFAGIDVFDIELDEKDPEKLVQIIAALEPTFGGINLEDIKAPECFYVERKLRERMKIPVFHDDQHGTAIVVGAAVVNGLTVVGKDIGKVKLVASGAGAAALACLDLLLDLGMKLENIWVTDLAGVVYEGRAELMDPEKARFAQKTDKRKLAEVIDGADIFLGLSAAGVLKQDMVQRMADKPLVLALANPNPEILPELVKEVRPDAVIATGRTDYPNQVNNVLCFPFIFRGALDCGATTITREMEVAAAHAIAELARQEQSDIVATAYGIQDLSFGPEYLIPKPFDPRLIVKIAPAVAEAAMKSGVAARPIKDMDAYRLQLQQFVYHSGTLMKPIYAAARQVDMEKKRIVFAEGEEERVLRAVQVIVDEKLANPILVGRPAVIAHRIERFGLRLRGGIDFTVVNPEHDARFRDYSEAYFKMMARQGITQQYAKLEMRRRTTLIGAMLVKQGEADGMICGTVSTTAAHLRYIDQVLGGSSEVYAAMNGLVLPGRQIFLVDTHVNIDPTAGQLAEITLMAAEELKRFGIVPKVALMSHSNFGTSEAPSAQKMRETLAILRERAPDLEVDGEMHGDCALDPKLRDTLVPDGTLKGEANLLVCPNIDAANIAYNLLKVAAGNNVAIGPILLGVKAPVHILTPSATVRRIVNMTSLVVVDAAAKR
>NZ_CP010536.1|WP_043349586.1|3812300_3813281_+|thiamine-phosphate-kinase
MPDSSSAQLSEFDLIRRFFTRPAHKAVLGVGDDCALIEGRPGHHLAISTDMLVSGRHFFPDVAPRSLGHKALAVNLSDLAAMGAEPRAFTLALALPDAQAAWLSELAAGMLELADAHGCELIGGDTTRGPLTLSLTVFGDVPVHKALRRDAARPGDDIWVSGTLGDARLALGDFRGEWLLPEPDFSQVRPRMDTPTPRIGLGMALRGVAHAALDISDGLVGDLGHILERSQVGALLDVDALPRSTVLASQPEPRQLECTLAGGDDYELCFTAPVGERDHIAAIGARLGLALTRVGVITPEAGLRLVDRDGNPSAYNGTSFDHFASP
>NZ_CP010536.1|WP_043349588.1|3813386_3813953_+|phosphatidylglycerophosphatase-A
MSAYPPGPTAHDSALTLEAGQAAKVTRPTARFMLSHPAHLIALGFGSGLSPVGPGTVGTLYAWLSYLVISMWVRPETWLWLIVGGFVLGLWACARTAHDMGVFDHGSMVWDEIVAFWLVMAFVMPTGFWGQLAAFLWFRLFDIVKPAPIGHLDRTLKGPGLRGGFGVMFDDIMAAFYTLLVFALWRSL
>NZ_CP010536.1|WP_043352318.1|3813991_3814489_+|CinA-family-protein
MPVSRLLDQLAVQVGISLNEKSLLLATAESCTGGLVAAAITDVSGSSGWFERGFVTYSNEAKSTMLGVPAKLIRDHGAVSEEVARAMAEGALLNSRAQVALSITGVAGPTGGTPEKPVGMVCFGWSNRVTTKVETQRFRGDRQQIRRQAAEYAIRGLLELVRNEA
>NZ_CP010536.1|WP_043349590.1|3814536_3815355_-|orotidine-5'-phosphate-decarboxylase
MTFTEQLAAAWQRNDSLLCVGLDPDPGKLPLSMTGTGGAIFSFCREIVDATADLVCAFKPQIAYFAAQRAEDQLEQLIAYIHDAHPGIPVILDAKRGDIGSTAQQYAIEAFERYRADAVTVNPYMGLDSLEPYLAYPDRGVIVLCRTSNPGGSDVQFLSVDGKPVYQVVAEAAATRWNTNGQMALVVGATFPAEIAKVREIVGDMPLLIPGIGAQGGDVEATVRAGRTGAGTGMMINSSRAILYASREKDFAAAARNVALQTRETINRFRQG
>NZ_CP010536.1|WP_043349592.1|3816138_3817101_+|magnesium/cobalt-transporter-CorA
MINLFVLQKGRLAQEQVDDRNELLQHKPIWIDVISPDDEELAWIKEAYGVALPELEDLGDLEASARYFEGEDENIHIRTDFLLDEEDISRNVRVAFVLTRDVLFSIHDEDLPVFRLVRLRARMRPGSVRNAKDVLMDLYATDAEYSADSIEEVYERLEEASKRVLAENVTDAAAADVLETIAREEDLNGRIRRNVMDTRRAVSFLMRSQLLSAEQQDEARQILRDIDSIENHTAFLFDKINFLMDATVGFININQNKIIKLFSVVSVALMPPTLIASIYGMNFKFMPELDWAAGYPWAIGLMAVSAAIPLVYFKRKGWLS
>NZ_CP010536.1|WP_043352319.1|3817124_3817826_-|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MRWLAYLLGTLIAGVLAMQVYFFLQIAAWQTVNPSSTAFMRAEQWRLCGFKFWSCQVDRRWVGYDDISRNLKRAVIASEDADFVNHPGYELDSMLDAWERNKKRGHIVRGGSTITQQLAKNLFLSSEQHYLRKGQELAITWMLEFWLDKQRIYEIYLNSVEWGEGVFGAEAAAQHYFKTSAAKLSVGQAARLAAALPAPKCFDKKEYCANVRVNFKVKANIIARRMGAATLPD
>NZ_CP010536.1|WP_043349594.1|3817918_3818794_-|shikimate-dehydrogenase
MQSQTPADRYVVIGNPIAHSRSPAIHAAFAQQTGEAVEYERLLAPLDGFVATVRAFFDGGGHGLNVTVPFKLEAYDLAERLTPRAESAGAVNTMWIEDGVIHGDNTDGVGLTRDIEVNLDTLLEGKRILLLGAGGAAMGAMLPLIACRPERIVVANRTPQRASDILENVAQQADEYGVELWGGGFDALAGLTDEDACDVVINATSSSLQGELPPVPAELLGKGVLAYDMMYGAEPTVFLKFAAQCGARTSDGLGMLVEQAAEAFYNWRGVRPATAPVLATLRAALQAEAAR

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Crispr_ID: NZ_CP010536_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010536_4

4296928-4297022

Orphan

Consensus_repeat	Method
GCCTTGGCACCGTCGGTGAACGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010536_4

>merge|NZ_CP010536|4|4296928-4297022|CRISPRCasFinder
GCACGGGCACCATCGGTGAACGTGTCGAACTTGCCTGCCTTGGCACCGTCGGTGAACGTGTCGAACTTGCCTGCCTTGGCGCCGTCGGTGAACGT

>NZ_CP010536|4|4|4296928-4297022|CRISPRCasFinder
GCACGGGCACCATCGGTGAACGT	GTCGAACTTGCCTGCCTTGGCACCGTCGGTGAACGTGTCGAACTTGCCT
GCCTTGGCGCCGTCGGTGAACGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010536.1\|WP_043350601.1\|4287608_4288535_+\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|185019
NZ_CP010536.1\|WP_043350604.1\|4288623_4289937_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|225254
NZ_CP010536.1\|WP_043350622.1\|4299139_4299517_-\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|274523
NZ_CP010536.1\|WP_043350632.1\|4302322_4302709_-\|DUF350-domain-containing-protein	unknown	unknown	gnl\|CDD\|226289
NZ_CP010536.1\|WP_043350590.1\|4282265_4283477_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
NZ_CP010536.1\|WP_043350593.1\|4284877_4286653_+\|glyoxylate-carboligase	unknown	unknown	gnl\|CDD\|183066
NZ_CP010536.1\|WP_043352445.1\|4283589_4284513_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NZ_CP010536.1\|WP_043350609.1\|4291581_4292475_+\|neutral-zinc-metallopeptidase	unknown	unknown	gnl\|CDD\|282131
NZ_CP010536.1\|WP_144409861.1\|4292605_4293361_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP010536.1\|WP_043350620.1\|4298598_4299039_-\|Cd(II)/Pb(II)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133411
NZ_CP010536.1\|WP_043350612.1\|4293515_4296614_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP010536.1\|WP_043350617.1\|4297645_4298065_-\|nucleoside-diphosphate-kinase-regulator	unknown	unknown	gnl\|CDD\|180236
NZ_CP010536.1\|WP_158001334.1\|4299527_4299695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010536.1\|WP_052494715.1\|4306314_4306749_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010536.1\|WP_043350640.1\|4304536_4306255_+\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|379192
NZ_CP010536.1\|WP_043350626.1\|4299701_4301222_-\|DUF4178-domain-containing-protein	unknown	unknown	gnl\|CDD\|379368
NZ_CP010536.1\|WP_043350636.1\|4302997_4304509_+\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|235139
NZ_CP010536.1\|WP_043350597.1\|4286774_4287557_+\|hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|226149
NZ_CP010536.1\|WP_043350629.1\|4301243_4302278_-\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|226711
NZ_CP010536.1\|WP_043350606.1\|4290001_4291480_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|180487

Protein	Function_ID	Function_description	E-value
NZ_CP010536.1\|WP_043350601.1\|4287608_4288535_+\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|185019	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase.	3.85865e-139
NZ_CP010536.1\|WP_043350604.1\|4288623_4289937_+\|glycerate-kinase	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP010536.1\|WP_043350622.1\|4299139_4299517_-\|adenosylmethionine-decarboxylase	gnl\|CDD\|274523	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535). [Central intermediary metabolism, Polyamine biosynthesis].	1.03372e-48
NZ_CP010536.1\|WP_043350632.1\|4302322_4302709_-\|DUF350-domain-containing-protein	gnl\|CDD\|226289	COG3766, COG3766, Predicted membrane protein [Function unknown].	3.20456e-29
NZ_CP010536.1\|WP_043350590.1\|4282265_4283477_+\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP010536.1\|WP_043350593.1\|4284877_4286653_+\|glyoxylate-carboligase	gnl\|CDD\|183066	PRK11269, PRK11269, glyoxylate carboligase; Provisional.	0
NZ_CP010536.1\|WP_043352445.1\|4283589_4284513_-\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	0.00117163
NZ_CP010536.1\|WP_043350609.1\|4291581_4292475_+\|neutral-zinc-metallopeptidase	gnl\|CDD\|282131	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase. Members of this family have a predicted zinc binding motif characteristic of neutral zinc metallopeptidases (Prosite:PDOC00129).	1.80971e-131
NZ_CP010536.1\|WP_144409861.1\|4292605_4293361_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	5.61179e-12
NZ_CP010536.1\|WP_043350620.1\|4298598_4299039_-\|Cd(II)/Pb(II)-responsive-transcriptional-regulator	gnl\|CDD\|133411	cd04784, HTH_CadR-PbrR, Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	1.88531e-56
NZ_CP010536.1\|WP_043350612.1\|4293515_4296614_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP010536.1\|WP_043350617.1\|4297645_4298065_-\|nucleoside-diphosphate-kinase-regulator	gnl\|CDD\|180236	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional.	2.76654e-40
NZ_CP010536.1\|WP_043350640.1\|4304536_4306255_+\|NAD(P)-binding-protein	gnl\|CDD\|379192	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.	6.1138e-08
NZ_CP010536.1\|WP_043350626.1\|4299701_4301222_-\|DUF4178-domain-containing-protein	gnl\|CDD\|379368	pfam13785, DUF4178, Domain of unknown function (DUF4178).	2.40904e-21
NZ_CP010536.1\|WP_043350636.1\|4302997_4304509_+\|polyamine-aminopropyltransferase	gnl\|CDD\|235139	PRK03612, PRK03612, polyamine aminopropyltransferase.	0
NZ_CP010536.1\|WP_043350597.1\|4286774_4287557_+\|hydroxypyruvate-isomerase	gnl\|CDD\|226149	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism].	9.78873e-144
NZ_CP010536.1\|WP_043350629.1\|4301243_4302278_-\|SPFH-domain-containing-protein	gnl\|CDD\|226711	COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism].	9.39756e-121
NZ_CP010536.1\|WP_043350606.1\|4290001_4291480_+\|pyruvate-kinase	gnl\|CDD\|180487	PRK06247, PRK06247, pyruvate kinase; Provisional.	0

>NZ_CP010536.1|WP_043350612.1|4293515_4296614_+|efflux-RND-transporter-permease-subunit
MASFFLRRPAFAWVIAILTMVAGLIALTRIPIAQYPAVAPPTVIVYADYAGASARTVEDAVTAVLEQQMHGIPGLLYLDASSEGGAATITLGFRQGTDAQLAQVNVRNRVMQAEPLLPEAVRRGGIFVDQAGSSPFMYVSLVSQNSQLDETALGDFAAASVLPMLRRLPGIGKAEPYGAEYALRIWFDPDKLNAYGLTAADVEQAIKARNGDVTPGQLGGAPAVPGQPYQALVRPPRPLAEPEAFGQIVVRAGGDASLVRLRDVARVELGASDYRYSSRHDGQVAASIGLKLADGANVLATSRAVRAALDEAARGFPTGMRYEISSDSAQFVERSIWRVLTTLGEATALVFLILYLFLGNLRATLIPVIVVPVSLLGTVACLYALGLSLNVITLFGVVLAIGILVDDAIVVVENVERIMREDGVHAMAAATRSMREVSGALVGVTLVLCAVFVPMAFLGSAVGVIYRHFAITLAISIAFSLFFALSLAPAMCASLLRHAPHPQRGPLAWFERGFTALTARYAGWVLALQRRRPRWLGIYLALAVAGGVLMWQIPAGFLPEEDTGELVIDMELPAGATQAQTRATVAALEAWLKAGKYPVRSTFAVLGWSNSGNGEQRASMYLALRDWSERGAGERADAVLARLQAGLQAWPGRGQAQLYAYNGAALPELGSTGGLDMRLVAQAGSGREALFAARDRLLAAVKDEPSLGEVRATTGEPAPALDLHIDYERARSFGVEPEAIHHALSATLGSRYIDEVAREGRIRRVILQADAPYRMDPAKLSRVHVRNASGGMVSLGAFAELAWGKGEATLERFNGLTSVRINAEVAPGHSTGTAMERLTARVRELGGAYDVRWTGRAFEQQQSGTQAPWLFALSMLFIFLCLVALYENWTLPLAVLLIVPAGLVGALVAIWLRGMPNDVYFKVGGVVIMGLAAKNAILVVEYAEQLRRGGMDLLEAAGQAARQRLRPVVMTSLAFVLGVVPLAISTGPGAAAQRAVGTGVLGGMLGATVIGSLAVPLLYVLIGRRRAGRERE
>NZ_CP010536.1|WP_144409861.1|4292605_4293361_+|TetR/AcrR-family-transcriptional-regulator
MSATRPAQSSPSAPPANVPATPVAARAGAPIAPIAPIAPIARVSGAELRRESVREAFFNAARALFAEAGFSGVTLRRIGERCGYSAAAIYRHFEDKTALLFELCAQDWVRLAAALADARAAAGTPALALPAVLDAYVSWALANRHSYHLMMMMGLPADAERAIDLRWGERFPEDPVNAVLMACVHDQQATALIDSMYDPGDVTNAVWTAVHGLAALEITFEHLPHEDWQPLAHRQQVLLAALLRGFSQPSR
>NZ_CP010536.1|WP_043350609.1|4291581_4292475_+|neutral-zinc-metallopeptidase
MRLDDEAESQNVEDRRGEGSGGFGGFGAGPRTLGIGTILVALAASYFFGIDPSVIMQGASVLQGSQQQAPQQQHVPSHPPAKDQMTVFVRKVLGNTERTWSHIFETDLNRRYAPPTLVIFSGATPTACGTGQSAMGPFYCPGDQKVYIDLAFYDELRQRFGAGGDFAQAYVIAHEIGHHVQNLLGVSGKVDAARRRMGEAQANQLSVRVELQADCLAGVWAATAERMNQQLLEPGDIEEGLKAAAAIGDDRLQKQAQGYVVPEAFTHGTSEQRTRWLRQGLTSGDIRKCDTFAAKQL
>NZ_CP010536.1|WP_043350606.1|4290001_4291480_+|pyruvate-kinase
MRRQRKAKIVATLGPASTDIEVIRQLFEAGADVFRLNFSHGSHDDHKRRYDAVRQVEAETGRPIAVLADLQGPKLRIGTFAAGKVAVKAGDAFVLDSDPSPGDATRVHLPHPELFRVAAPGQSLLIDDGKVQLKIEAVASGSIATRVVNHGTLSDRKGVNVPDAVIPIPALTEKDRKDLDFALALGADWIALSFVQRPADIVEAREIIGTRAGVLSKIEKPAALQQLEEIVRVSDAVMVARGDLGVELPPERVPGVQKRILRICRQHGKPIVIATQMLESMIDSPVPTRAEASDVASAIYDGADAVMLSAESANGRHPVPAVAIMNRIITEVERDPLYRNLLDAGHEAPLSTRQDAICAALREVTQIIGAVATVTYTSSGSTALRAARERPCAPIVSITPNLEIARRLAIAWGVHSTVSPDVQSVDEMVDAATRAALAEGYAEPGDQITIAAGMPFGQGGTTNLLRVAEIGGAQPGKTPGQATASTAPAVTA
>NZ_CP010536.1|WP_043350604.1|4288623_4289937_+|glycerate-kinase
MLATDSYPTLLAPQRPAGLTDPRALLRDLFDTAVAAVSASHCLVPHLPTPPKGRTVVIGAGKAAAAMAQAAEAHWQGEISGLVVTRYGHGAPCQRIEVVEAAHPVPDEAGQRAAQRMVALVKDLSADDLVLCLISGGGSALLAAPADGITLADKQAVNKALLKSGANIGEMNCVRKHLSALKGGRLALHCAPARVETLLISDIPGDDPTLIASGPTLPDATTCADALAVIAKYGIEVPANVRAHLESGAGETPKPGDARFDGHRSVTLATAQQSLQAAAARARELGVEAHILSDSIEGESRDVALVHAAIARQVAQHGQPFRKPCVILSGGETTVTVRGSGRGGRNAEFLLALAVALDGLPGVHAIACDTDGIDGSEDNAGALLAPDTLTRAEARGLSARAHLGNNDGYGFFAGLDDLIVTGPTRTNVNDFRAILIV
>NZ_CP010536.1|WP_043350601.1|4287608_4288535_+|2-hydroxy-3-oxopropionate-reductase
MANQRNVGFIGLGIMGAPMAGHLRAAGHTLFVHDVNPAPQALVDAGVTVCTSAEEVAKRADIIVIMVPDTPHVEAVLFAEKGVAAALKGAGKQAAHGKIVVDMSSISPIATKDFAARVNKLGAAYLDAPVSGGEVGAKAASLTIMVGGPQESFDEVKPLFDLLGKNVTLVGGNGDGQTTKVANQIIVALNIQAVSEALLFASKAGADPARVRQALMGGFAASRILEVHGERMVKRTFDPGFRIELHQKDLNLALQGAKALGVALPNTATAQELFNTCAANGLGKQDHSALCRAIEIMSNHEIAKGGAK
>NZ_CP010536.1|WP_043350597.1|4286774_4287557_+|hydroxypyruvate-isomerase
MPKLAANLTMLFNEVAFLDRFEAAARAGFRGVEFLFPYAFHADQIADRLNRFQLDLVLHNLPAGKWEAGERGIACHPDRVSEFQDGVGEAIKYAKVLGVRQLNCLVGIQPQNVKREQAQETLVENLRFASQALGAEQIDLLVEPINTFDIPGFFLSRTQQALDLIAQVNAPNLYVQYDIYHMQRMEGEIAATLKANLPKIKHVQLADNPGRNEPGTGELNYHFLFQWLDEIGYGGWVGCEYKPRTTTVEGLGWRAAHGVQ
>NZ_CP010536.1|WP_043350593.1|4284877_4286653_+|glyoxylate-carboligase
MPKMRAVDAAIAVLEKEGITTAFGVPGAAINPFYSAMRRAGTIDHFLARHVEGASHMAEGYTRAEAGNIGVCIGTSGPAGTDMITGLYSAWADSIPILCITGQAPRARLYKEDFQAVDIESIAKPVTKWAVTVREPALVPQVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPETYQPLAPYKPVASRAQIEKAIAMLNAAERPLIVCGGGVINADAAELLVEFAELVNVPVVPTLMGWGVLADDHPLQAGMVGLQTSHRYGNATMLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALEQFVEVAREMKMAGRLPCRKSWVADVQKRRRTMQRKSDFDNVPVKPQRVYREMNQYFPRDVRYVSTIGLSQIAAAQFLSVNEPRHWINCGQAGPLGWTIPAAIGVKVASPESDVVAISGDYDFQFMIEELAVAAQFKVPYIHLVVNNSYLGLIRQAQRNFEMDYCVQLAFDNVNSPELNGYGVDHVKVVEGLGCKAIRVFKPEDIAPAFAEARDLMAEFSVPVVVEVILERVTNIAMGTEIDNINEFEPIEDIEEAILKEEVETA
>NZ_CP010536.1|WP_043352445.1|4283589_4284513_-|hypothetical-protein
MHTRLPPTRELLDALKRKPSAVSDTAGSPASAMNLMRLQRGLLVLFWACSVAALLVTGAVLYTRYQILQTPAPWLARLVYSLLGGSVAGLAALLLTHLPALARRLRDPLGALADQVDRHDEAESALLRSLARVPAQALRARARRVEVQLRMWEGMAKTVGLLIVVSPGALALVTGLLELPRKGGSLLPLLSLYGLGFVSGAALAVFLQLQVSRPLRRLAYVLGEAAQISAQLEKAPTPSAAASAVSAVVPIAAAPSAVPSPAPLPPEVRQASALGDAAAASPQEDAAAQVDHADHAAAGPPTLPALP
>NZ_CP010536.1|WP_043350590.1|4282265_4283477_+|amidohydrolase
MTREPTLTPFQLLPHLLPAIQIDAETFIGIRRQIHAQPELGFEVGATSKLVATLLESWGYEVHTGIGKSGVVGQLKLGNGKRRLGIRADMDALPVVEATGLPYASKIPGKMHACGHDGHTAILLAAAKALADSRDFDGTLNLIFQPDEENLCGARAMIEDGLFARFPCDAVFALHNMPGVPAGTFRVLPGPVSLSSDVADVTIKGVGGHGAMPHRARDPIAASAAIVTALQTVVARNVAPDDTAVVSVGFIRGGATHNVIPESVTLGLNVRAARPETRALVEQRIREIVSLTAQAHGVEAHIDYRQLTPPMVNTQAETTLAQQVCAELVGTDKVVTQAPKGLNGSEDFAWMLNEVPGCYLILGNGEGEFGGCMVHNPGYDFNDRVLPLGAACWVRLAQTYLAG
>NZ_CP010536.1|WP_043350617.1|4297645_4298065_-|nucleoside-diphosphate-kinase-regulator
MTASSKQQPTLYLTELDVTRLERIAGRAGAAPLAEMLDSILERAAIVPAEAIPKDVVTMNSSLLCALEGEATPRRWTLVYPDTADFEEGRLSVLSPIGRVLLGARAGQTVSYRLPDGREQSVTVVELSFQPEANGQYTV
>NZ_CP010536.1|WP_043350620.1|4298598_4299039_-|Cd(II)/Pb(II)-responsive-transcriptional-regulator
MRIGELAKHSSCDVETIRYYEREGLLDAPQREDNGYRRYGDGHLLQLNFVRHCRSLGMSLSDVRRLRDFERDPTLACDDINSLLDRQIEQIHAQRVALEALEGQLRALRHTCDQPHPASECGILQNLQQAAAGAACECHPHPESHA
>NZ_CP010536.1|WP_043350622.1|4299139_4299517_-|adenosylmethionine-decarboxylase
MNAPALPCPAVLGHHLLADLQGVASDLLADAALVERVLYRAAQAAGATVVDARFRHFGPGLGVTGVLLLKESHISIHTWPEYGFAAVDVFMCGAARPELAVEVMRAAFVPRTLTLRDQARGPAPG
>NZ_CP010536.1|WP_158001334.1|4299527_4299695_-|hypothetical-protein
MRLLYLVYGIIVLFGTTFFNIGESTGSGSSGYASSRGWSGGSSGSSGWSSGGGHK
>NZ_CP010536.1|WP_043350626.1|4299701_4301222_-|DUF4178-domain-containing-protein
MQEINCPSCGAPAAFRSSAAVMVVCEFCHSTLLKDADTVKDIGKMSAVLEDYTPLQIHTSGQWDGQGFTLVGRIQLRYDSGLWNEWYLLFDDGSDGWLADASGQYMLTRRVTAEQSAAQLNGVALPRHDQLTPGTPLYFDKHRYLASDVRSARCTGGQGELPFAVGAGWTAQVADFRDEGRFLTLDYADGDPPAIYAGQAVTLDQLKCQLLREAGQIAGTADRYRGKAVPLACPGCGGPIAYRAGVASFVVCPSCHSEIDCSTSTALVLEKQRELDALKTSLAPGDIGNIDGKPYTVLGLMQCTDNDEEEASTWVEYLLFNEQRGLMWLVEQDSGWDRVEVLDTWPRMVSGTSASYQGQTFQQGYDYESEVLYAAGTFNWRVKVGDTTRLTEFGKPARRLTRETSGTEIVWTLSTTVARAQLAQWFKSSPGLAAAARLPQAARASAAGNSADLAFCRKSAKVYAILLAILNVPVALVTDRGWFTIVIGFLLLWAPIWLVQRWAGKD
>NZ_CP010536.1|WP_043350629.1|4301243_4302278_-|SPFH-domain-containing-protein
MSIGSFIKKQFIDILQWTEDTDGVLAWRYPMEDMEIQYGGSLTVRESQMAVFVNEGKIADVFGPGMHKLTTQTLPVLTYLKNWDKLFESPFKSDVYFFSTRLQIGRKWGTAQPITIRDADFGMVRLRAFGLYSYKVADAARFYTEISGTRAEYTRDEVEEQLRNLLIATMTATLGGASVPFLDMAANQALMSQTIRDKLAPEFERYGVALDNFAVTNVSLPEELQKAIDTRISMGMMGDMAKFTQYQVATSIPLAAQNEGGVAGLGASLAAGAVMGQAMAGGLGAAAGVQPAAPAAAAAAPAVAAPADDPAARLQKLKDLLDKSLISQAEFDTAKAEILKKLIG
>NZ_CP010536.1|WP_043350632.1|4302322_4302709_-|DUF350-domain-containing-protein
MQAIYAYVLHLLAGLALLAVFVGVYTRITPFREFALIRQGNLAAALSLSGAMIGFCFTLSSSIQHNDTFLMFLVWSVGAMLVQALAYAGLARALPDMDAAIESNNIGMGGLMGAISVTVGLINAACLS
>NZ_CP010536.1|WP_043350636.1|4302997_4304509_+|polyamine-aminopropyltransferase
MRDRTLVLSVLIVASCGLGYELIAGALSSYLLGDSILQFSSIIGCYLFAMGVGSWLSRYVKDEDVLARFIDIEILIGLLGGISAALLFVVFAWLSAPFRTALYAMVFVLGVLVGMEIPLVMRVLNTRRTAFSELVSRVLTFDYLGALAVSLVFPLVLAPRLGLSRTGFLFGMLNAGVALVTIHIFRDELKPVMSRMLRASLVLVLLAGGFLASGRLTHWAERGMFGDEIIHSESTPYQRLVITRWKDDMRLYINGNLQFSSRDEHRYHEALVHPVLQALPWARRVLVIGGGDGLAVREILKHKNIEHVTLVDLDPAMTTLFSRSEPLVALNQGSLKDARVQVVNADAAQWMEQHNEMFDAIIVDLPDPSNFGLGKLYSVPMYKLMSHHLAEKGYAVVQSTSPYFAPRSFWDIDATLREAGLHTWPYHAYVPSFGEWGFILAGKRDDYTPPTRYTVPLKFLDADSTALMFRFPADMAPREARANRLNEQSLVHDFEQDWRNVIR
>NZ_CP010536.1|WP_043350640.1|4304536_4306255_+|NAD(P)-binding-protein
MDRRRFLIAGAGASGLGLLSGCDRLGDDTRRFLAGVGLREPMPVVLRPGMAEGHALRDAASWPSTVSAQDEIVTDVAILGGGVAGLSAAWQLARGGLKDFLLVDGPEFGGNAAAGSFGGDLAFPRGAHYLPLPSPESTHIREMLADTGVIQRDPFAARPEFDERALVHAPDERLFFAGKWHDGLLPSDAAPEQEAAQHARFLARVEQLKSARGSDGRKAFAIPLALASQDPAWTRLDQQSMRQWMLTEGFTAPTLHTYVDYCCRDDYGAGHELISAWAGLYYFASRAGHASDAADGAVLTWPDGLHALVTRLSARIDAHRGVKPGAQPWRRPGMALQVQEQGRGVSVLCAWWPDGVGARPPRIYRIRARRVICAMPLHVAARVAPLREFGFDPARHLPPTASWLVSSFRLQGFPPEAPGVPLAWDNVVHGGRGLGYVVSTHQLIRQAKPAATVFTAYCPLDFAASPGAAPRSLADTRRWLAEASAAELMDYATTDLRTVYGRAFWRHADAVEITVRGHAMASPRTGFLGNAGAAALRAADGRILFAHADLSGVSVFEEAAWWGTRAARNILG
>NZ_CP010536.1|WP_052494715.1|4306314_4306749_+|hypothetical-protein
MLDFVSNPLTRDPNPDFFVRAIRFLLLLLMLAVMPFQSWAGARTCAVGNTVQADSCSTLAQDAAVATAGDAAHAAAIDASAAPGSADVGDAKDPSQPGADLAESLLPASPPRFAAGLARSAAPAHRAGVMSDPDLPLQQRPPSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1007057 : 1015855

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043344491.1\|1007057_1008431_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	9.8e-73	35.9
WP_052494446.1\|1008501_1009449_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	4.9e-15	27.5
WP_043344493.1\|1009489_1010485_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	1.2e-27	32.8
WP_052494447.1\|1010670_1011048_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_043344496.1\|1011332_1012649_+	pyrimidine permease	Q9KX94	Enterobacteria_phage	4.9e-146	65.2
WP_043351371.1\|1012719_1013622_+	cysteine synthase CysM	C3U2M1	Lactococcus_phage	1.4e-51	42.4
WP_043351372.1\|1013706_1014813_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_043344499.1\|1014931_1015855_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.0e-37	32.6

DBSCAN-SWA_2

1479459 : 1488597

Burkholderia_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052494487.1\|1479459_1481205_+	hypothetical protein	Q6V7U1	Burkholderia_virus	4.2e-12	52.7
WP_144409754.1\|1481201_1481459_+	hypothetical protein	NA	NA	NA	NA
WP_082054986.1\|1481676_1482576_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082054987.1\|1482650_1483079_+	DUF1643 domain-containing protein	K4JUN8	Caulobacter_phage	1.4e-22	48.4
WP_144409755.1\|1483562_1484123_+	hypothetical protein	A0A2H4IY74	uncultured_Caudovirales_phage	1.9e-14	58.1
WP_144409756.1\|1484802_1485171_+	hypothetical protein	NA	NA	NA	NA
WP_144409757.1\|1485333_1485849_+	hypothetical protein	NA	NA	NA	NA
WP_052494490.1\|1485845_1486364_+	macro domain-containing protein	A0A0F6SIM5	Sinorhizobium_phage	5.6e-21	43.6
WP_043345095.1\|1486360_1486654_+	hypothetical protein	NA	NA	NA	NA
WP_043345097.1\|1486650_1486926_+	hypothetical protein	C5IHK9	Burkholderia_virus	3.2e-23	57.3
WP_043345100.1\|1487082_1488597_+	hypothetical protein	A0A077SK57	Escherichia_phage	1.3e-73	35.9

DBSCAN-SWA_3

1717191 : 1731664

Pseudomonas_phage(58.33%)

integrase

attL 1712392:1712407|attR 1720656:1720671

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1712392:1712407	attL	NA	NA	NA	NA
WP_043345471.1\|1717191_1718196_+\|integrase	site-specific integrase	A0A0A0YR56	Pseudomonas_phage	1.6e-64	49.3
WP_043345472.1\|1718192_1718519_-	hypothetical protein	NA	NA	NA	NA
WP_043345474.1\|1718579_1718795_-	hypothetical protein	NA	NA	NA	NA
WP_043345476.1\|1718795_1719347_-	DUF1643 domain-containing protein	A0A142KC71	Gordonia_phage	3.2e-22	45.3
WP_043345478.1\|1719379_1719634_+	hypothetical protein	NA	NA	NA	NA
WP_043345480.1\|1719636_1720380_-	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	2.1e-37	40.1
WP_043345482.1\|1720378_1720918_+	hypothetical protein	NA	NA	NA	NA
1720656:1720671	attR	NA	NA	NA	NA
WP_043345485.1\|1720950_1721838_-	phage Gp37/Gp68 family protein	K7ZPX2	Xanthomonas_citri_phage	1.9e-101	60.4
WP_144409774.1\|1721882_1722170_+	hypothetical protein	NA	NA	NA	NA
WP_043345492.1\|1722172_1723957_-	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	1.6e-179	66.0
WP_043345494.1\|1724070_1724271_+	hypothetical protein	NA	NA	NA	NA
WP_158408268.1\|1724297_1724822_-	Lar family restriction alleviation protein	A9YWV9	Burkholderia_phage	2.8e-12	46.1
WP_052494523.1\|1724814_1725420_-	hypothetical protein	A0A1B0Z2P2	Pseudomonas_phage	7.5e-17	40.1
WP_043345499.1\|1725535_1726153_-	3'-5' exonuclease	A0A2H4J7C9	uncultured_Caudovirales_phage	4.0e-42	46.2
WP_043345503.1\|1726210_1726525_-	hypothetical protein	NA	NA	NA	NA
WP_052494524.1\|1726524_1726695_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_043345506.1\|1726724_1726907_-	hypothetical protein	NA	NA	NA	NA
WP_043345509.1\|1726906_1728652_-	AAA family ATPase	H2BD46	Pseudomonas_phage	6.8e-79	37.9
WP_043345512.1\|1728658_1729546_-	cell division protein FtsK	J7I0T4	Pseudomonas_phage	2.6e-10	55.7
WP_043345514.1\|1729658_1730834_-	hypothetical protein	J7HXB6	Pseudomonas_phage	3.4e-66	51.7
WP_043345516.1\|1730869_1731664_-	PD-(D/E)XK nuclease family protein	J7HXJ4	Pseudomonas_phage	2.5e-60	49.3

DBSCAN-SWA_4

1736101 : 1817317

106

Ralstonia_virus(21.31%)

integrase,terminase,capsid,transposase,plate,holin,coat,tail,portal,head

attL 1744942:1744958|attR 1794289:1794305

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144409777.1\|1736101_1737148_-	helix-turn-helix transcriptional regulator	B6SCU0	Bacteriophage	3.8e-32	45.3
WP_063778404.1\|1737188_1737488_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144409778.1\|1737608_1737854_-	hypothetical protein	NA	NA	NA	NA
WP_144409779.1\|1738192_1738459_+	hypothetical protein	NA	NA	NA	NA
WP_043345547.1\|1738532_1738832_+	DUF4406 domain-containing protein	L7TKQ2	Pseudomonas_virus	1.3e-22	52.6
WP_043345548.1\|1738908_1739103_+	hypothetical protein	NA	NA	NA	NA
WP_043345549.1\|1739230_1739686_+	hypothetical protein	A0A0K1LLW1	Caulobacter_phage	1.4e-12	34.3
WP_043345551.1\|1739682_1740042_+	DUF2591 domain-containing protein	F8TVJ2	EBPR_siphovirus	5.8e-09	39.5
WP_043345554.1\|1740038_1740311_+	hypothetical protein	NA	NA	NA	NA
WP_043345555.1\|1740307_1740577_+	hypothetical protein	NA	NA	NA	NA
WP_043345556.1\|1740573_1741428_+	hypothetical protein	A9YWY3	Burkholderia_phage	2.2e-78	54.2
WP_144409780.1\|1741424_1742531_+	hypothetical protein	NA	NA	NA	NA
WP_043345559.1\|1742527_1742743_+	hypothetical protein	NA	NA	NA	NA
WP_043345560.1\|1742739_1743105_+	hypothetical protein	Q3HQZ9	Burkholderia_phage	2.4e-42	68.4
WP_158408270.1\|1743101_1743794_+	HNH endonuclease	A0A2H4J6F5	uncultured_Caudovirales_phage	6.6e-17	38.2
WP_043345561.1\|1743895_1744501_+	hypothetical protein	Q3HR05	Burkholderia_phage	5.9e-46	52.6
WP_052494526.1\|1744511_1745153_+	hypothetical protein	NA	NA	NA	NA
1744942:1744958	attL	NA	NA	NA	NA
WP_043345562.1\|1745919_1747302_+	chromosome partitioning protein ParB	A0A1P8VV91	Erythrobacter_phage	4.6e-86	31.6
WP_052494527.1\|1747330_1747729_+	hypothetical protein	NA	NA	NA	NA
WP_043345563.1\|1747715_1749002_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	6.6e-164	66.3
WP_043345564.1\|1749029_1750415_+	DUF4055 domain-containing protein	A0A0S2SYJ5	Pseudomonas_phage	6.4e-104	45.4
WP_043351633.1\|1750549_1751347_+	hypothetical protein	A0A0S2SY92	Pseudomonas_phage	5.3e-71	64.1
WP_043345565.1\|1751482_1752649_+\|coat	coat protein	G8C7P7	Escherichia_phage	6.3e-97	51.5
WP_144409886.1\|1752908_1753112_+	hypothetical protein	NA	NA	NA	NA
WP_043345569.1\|1753115_1753511_+	hypothetical protein	NA	NA	NA	NA
WP_043345574.1\|1753520_1753964_+	hypothetical protein	A0A0A0RPF0	Escherichia_phage	1.3e-10	33.6
WP_043345576.1\|1753963_1754614_+	hypothetical protein	NA	NA	NA	NA
WP_043345580.1\|1754634_1755552_+	hypothetical protein	NA	NA	NA	NA
WP_043345584.1\|1755561_1755762_+	hypothetical protein	NA	NA	NA	NA
WP_052494528.1\|1755823_1757818_+	hypothetical protein	B3GAJ6	uncultured_virus	2.2e-25	40.2
WP_043345587.1\|1757880_1758321_+	hypothetical protein	NA	NA	NA	NA
WP_043345592.1\|1758320_1758701_+	hypothetical protein	NA	NA	NA	NA
WP_043345595.1\|1758879_1759359_+	phage protein, HK97 gp10 family	NA	NA	NA	NA
WP_043345597.1\|1759345_1759603_-	hypothetical protein	NA	NA	NA	NA
WP_043345598.1\|1759651_1761589_+	hypothetical protein	A4PE52	Ralstonia_virus	8.7e-59	36.4
WP_043345600.1\|1761593_1762556_+	hypothetical protein	NA	NA	NA	NA
WP_043345612.1\|1762562_1763687_+	phage late control D family protein	NA	NA	NA	NA
WP_052494529.1\|1763683_1764196_+	hypothetical protein	B3GAJ7	uncultured_virus	7.7e-15	33.6
WP_043345614.1\|1764199_1765069_+	hypothetical protein	NA	NA	NA	NA
WP_043345617.1\|1765079_1765481_+	hypothetical protein	NA	NA	NA	NA
WP_043345621.1\|1765484_1766609_+\|plate	baseplate J/gp47 family protein	B3GAJ9	uncultured_virus	6.4e-54	41.9
WP_043345624.1\|1766610_1767294_+	hypothetical protein	D9J0Q3	Brochothrix_phage	8.8e-06	35.6
WP_144409781.1\|1767430_1769131_+	hypothetical protein	A0A1X9SGU3	Bradyrhizobium_phage	1.4e-15	31.2
WP_144409782.1\|1769347_1770166_+	hypothetical protein	NA	NA	NA	NA
WP_043345630.1\|1770203_1771322_-	acyltransferase	A0A0M4REL5	Salmonella_phage	1.4e-05	22.1
WP_144409723.1\|1771516_1772759_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.9e-14	32.3
WP_144409783.1\|1772818_1773112_+	hypothetical protein	NA	NA	NA	NA
WP_043345637.1\|1773115_1773805_+	hypothetical protein	A0A1Y0SY03	Sinorhizobium_phage	4.8e-12	51.7
WP_144409784.1\|1773801_1775301_+	hypothetical protein	NA	NA	NA	NA
WP_043345641.1\|1775351_1775750_+	hypothetical protein	NA	NA	NA	NA
WP_043345645.1\|1775742_1776288_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	1.3e-52	60.3
WP_043345648.1\|1776367_1776859_+	hypothetical protein	NA	NA	NA	NA
WP_043345653.1\|1776845_1777271_+	hypothetical protein	NA	NA	NA	NA
WP_052494531.1\|1777327_1777585_+	hypothetical protein	NA	NA	NA	NA
WP_082054831.1\|1777875_1778157_+	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_173430707.1\|1778326_1778584_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	3.2e-09	60.7
WP_144409785.1\|1778567_1779242_-	hypothetical protein	NA	NA	NA	NA
WP_043345658.1\|1779633_1780215_-	hypothetical protein	NA	NA	NA	NA
WP_043345659.1\|1780263_1780749_-	hypothetical protein	NA	NA	NA	NA
WP_043345661.1\|1780745_1781387_-	SOS response-associated peptidase family protein	C7BGE4	Burkholderia_phage	4.3e-39	42.8
WP_043345666.1\|1781376_1781799_-	hypothetical protein	NA	NA	NA	NA
WP_043345669.1\|1781819_1782086_-	hypothetical protein	NA	NA	NA	NA
WP_043345673.1\|1782073_1782436_-	hypothetical protein	NA	NA	NA	NA
WP_043345677.1\|1782991_1783996_+\|integrase	site-specific integrase	A0A0A0YR56	Pseudomonas_phage	1.4e-68	51.6
WP_043345680.1\|1784057_1784357_-	hypothetical protein	NA	NA	NA	NA
WP_144409786.1\|1784353_1784776_-	hypothetical protein	NA	NA	NA	NA
WP_043345683.1\|1784796_1785000_-	hypothetical protein	NA	NA	NA	NA
WP_043345687.1\|1784992_1785235_-	hypothetical protein	A4PE65	Ralstonia_virus	7.6e-21	66.7
WP_158408271.1\|1785234_1785393_-	hypothetical protein	NA	NA	NA	NA
WP_043345691.1\|1785640_1788346_-	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	0.0e+00	66.4
WP_043345694.1\|1788366_1788915_-	Bro-N domain-containing protein	A0A077K9T3	Ralstonia_phage	4.9e-68	71.6
WP_043345697.1\|1789024_1789273_-	ogr/Delta-like zinc finger family protein	A4PE60	Ralstonia_virus	1.7e-28	73.8
WP_043345699.1\|1789380_1789881_+	hypothetical protein	NA	NA	NA	NA
WP_043345702.1\|1789955_1790249_-	hypothetical protein	E5E3P2	Burkholderia_phage	8.3e-30	69.7
WP_082054833.1\|1790252_1790492_-	hypothetical protein	A4JWR7	Burkholderia_virus	5.6e-08	41.0
WP_043345704.1\|1790566_1790989_+	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	3.1e-30	55.0
WP_144409787.1\|1791288_1792023_+	hypothetical protein	A4PE55	Ralstonia_virus	5.3e-41	42.2
WP_144409788.1\|1792127_1792583_+	hypothetical protein	NA	NA	NA	NA
WP_082054834.1\|1793128_1793935_-	NYN domain-containing protein	NA	NA	NA	NA
WP_052494534.1\|1794067_1795222_-	phage late control D family protein	A0A077KES1	Ralstonia_phage	9.6e-130	65.1
1794289:1794305	attR	NA	NA	NA	NA
WP_043345716.1\|1795218_1795644_-\|tail	phage tail protein	A4PE53	Ralstonia_virus	1.6e-45	68.3
WP_043345721.1\|1795646_1798328_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	1.0e-89	31.2
WP_082054835.1\|1798324_1798465_-\|tail	GpE family phage tail protein	A0A077K821	Ralstonia_phage	1.0e-09	63.0
WP_043345724.1\|1798422_1798752_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	1.5e-19	54.3
WP_043345729.1\|1798794_1799304_-\|tail	phage major tail tube protein	A0A077KER7	Ralstonia_phage	3.5e-68	71.0
WP_043345733.1\|1799326_1800499_-\|tail	phage tail sheath protein	A4PE49	Ralstonia_virus	2.1e-161	70.8
WP_043345736.1\|1801343_1802915_-\|tail	tail fiber protein	E5FFH1	Burkholderia_phage	1.8e-102	46.0
WP_043345739.1\|1802916_1803465_-\|tail	phage tail protein I	E5FFH2	Burkholderia_phage	1.1e-62	66.3
WP_043345742.1\|1803457_1804366_-\|plate	baseplate J/gp47 family protein	R4JDM0	Burkholderia_phage	3.5e-95	62.0
WP_052494535.1\|1804362_1804725_-	GPW/gp25 family protein	A4PE42	Ralstonia_virus	5.4e-31	62.5
WP_043345747.1\|1804721_1805339_-\|plate	phage baseplate assembly protein V	A0A077K9S0	Ralstonia_phage	1.5e-76	68.8
WP_043345751.1\|1805620_1806067_-	phage virion morphogenesis protein	A0A077K9X5	Ralstonia_phage	1.4e-49	68.7
WP_043345755.1\|1806063_1806504_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	4.6e-56	72.0
WP_043345759.1\|1806500_1807010_-	hypothetical protein	A4PE37	Ralstonia_virus	4.6e-44	69.8
WP_043345762.1\|1807006_1807813_-	DUF3380 domain-containing protein	A0A077K808	Ralstonia_phage	1.7e-96	67.9
WP_052494536.1\|1807809_1808121_-\|holin	phage holin family protein	A0A077KER0	Ralstonia_phage	3.2e-32	69.3
WP_043345765.1\|1808117_1808507_-\|holin	phage holin family protein	A0A1S5NRL1	Burkholderia_phage	4.2e-21	51.6
WP_043345769.1\|1808521_1808725_-\|tail	tail protein X	A0A077K8R0	Ralstonia_phage	9.8e-22	75.0
WP_043345773.1\|1808724_1809192_-\|head	head completion/stabilization protein	A4PE32	Ralstonia_virus	4.8e-48	66.7
WP_043345776.1\|1809287_1810010_-\|terminase	terminase endonuclease subunit	A4PE31	Ralstonia_virus	3.8e-84	68.3
WP_043345780.1\|1810006_1811014_-\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	1.6e-141	74.8
WP_043345783.1\|1811062_1811881_-\|capsid	GPO family capsid scaffolding protein	A0A077K9W8	Ralstonia_phage	4.7e-99	67.0
WP_052494537.1\|1812023_1813802_+\|terminase	terminase ATPase subunit family protein	A0A077K8Q7	Ralstonia_phage	5.6e-278	80.6
WP_043345789.1\|1813798_1814854_+\|portal	phage portal protein	A4PE27	Ralstonia_virus	2.4e-159	76.7
WP_043345793.1\|1815039_1815999_-	hypothetical protein	NA	NA	NA	NA
WP_144409789.1\|1816000_1817317_-	hypothetical protein	Q858T2	Yersinia_virus	1.4e-07	28.2

DBSCAN-SWA_5

3415646 : 3425464

Escherichia_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043348693.1\|3415646_3416795_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2K9L470	Tupanvirus	3.4e-26	31.8
WP_043348695.1\|3416791_3417793_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A1V0SAI8	Catovirus	4.8e-37	33.9
WP_043348697.1\|3417826_3418777_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	2.6e-88	47.9
WP_043348699.1\|3418787_3420149_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.8e-77	39.2
WP_144409900.1\|3420811_3422731_-	polysaccharide biosynthesis protein	L7Y3T9	Megavirus	3.3e-18	26.4
WP_043348700.1\|3422820_3423372_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.5e-43	48.3
WP_043348702.1\|3423492_3424410_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.9e-24	34.0
WP_043348703.1\|3424399_3425464_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	8.7e-85	47.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010537

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010536

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection