CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010817	Myroides profundi strain D25 chromosome, complete genome	12 crisprs	DEDDh,cas3,PD-DExK,WYL,RT,csx1,csa3	2	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010817_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_1

40204-40313

Orphan

Consensus_repeat	Method
AGTAGAGACGGATTATTATCCGTGTCAGACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010817_1

>merge|NZ_CP010817|1|40204-40313|CRISPRCasFinder
AGTAGAGACGGATTATTATCCGTGTCAGACAAACAAATCAACCCAATCAAAACACAAACAATCCCAATCAACATCAAAGTAGAGACGGATTATTATCCGTGTCAAACAAA

>NZ_CP010817|1|1|40204-40313|CRISPRCasFinder
AGTAGAGACGGATTATTATCCGTGTCAGACAAA	CAAATCAACCCAATCAAAACACAAACAATCCCAATCAACATCAA
AGTAGAGACGGATTATTATCCGTGTCAAACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041895060.1\|42443_43892_+\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP010817.1\|WP_041888224.1\|38929_39790_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293839
NZ_CP010817.1\|WP_041888225.1\|40482_41007_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
NZ_CP010817.1\|WP_006257883.1\|51008_51785_-\|heme-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237422
NZ_CP010817.1\|WP_041888218.1\|34790_35192_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234989
NZ_CP010817.1\|WP_006257885.1\|48542_49520_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|365989
NZ_CP010817.1\|WP_041888227.1\|42008_42338_+\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|223393
NZ_CP010817.1\|WP_041888234.1\|49956_50997_-\|hemin-degrading-factor	unknown	unknown	gnl\|CDD\|226243
NZ_CP010817.1\|WP_041888212.1\|29018_30527_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381615
NZ_CP010817.1\|WP_041888229.1\|43956_44709_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|273907
NZ_CP010817.1\|WP_041895058.1\|30637_31537_+\|DUF4837-family-protein	unknown	unknown	gnl\|CDD\|379774
NZ_CP010817.1\|WP_041888236.1\|51787_52819_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP010817.1\|WP_041888220.1\|35262_37185_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341067
NZ_CP010817.1\|WP_041888231.1\|44762_46082_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|376550
NZ_CP010817.1\|WP_041888210.1\|27771_28962_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP010817.1\|WP_006257901.1\|26100_27249_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|273213
NZ_CP010817.1\|WP_041888214.1\|31588_33571_-\|KUP/HAK/KT-family-potassium-transporter	unknown	unknown	gnl\|CDD\|376906
NZ_CP010817.1\|WP_041888222.1\|37239_38853_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173809
NZ_CP010817.1\|WP_041888216.1\|33669_34539_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|379135
NZ_CP010817.1\|WP_006257886.1\|46808_48503_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236378

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041895060.1\|42443_43892_+\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP010817.1\|WP_041888224.1\|38929_39790_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293839	cd16281, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	6.89001e-149
NZ_CP010817.1\|WP_041888225.1\|40482_41007_+\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00796745
NZ_CP010817.1\|WP_006257883.1\|51008_51785_-\|heme-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	6.29585e-97
NZ_CP010817.1\|WP_041888218.1\|34790_35192_-\|ribonuclease-P-protein-component	gnl\|CDD\|234989	PRK01903, rnpA, ribonuclease P protein component.	7.98555e-23
NZ_CP010817.1\|WP_006257885.1\|48542_49520_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|365989	pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain.	1.07907e-71
NZ_CP010817.1\|WP_041888227.1\|42008_42338_+\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|223393	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones].	4.34096e-41
NZ_CP010817.1\|WP_041888234.1\|49956_50997_-\|hemin-degrading-factor	gnl\|CDD\|226243	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism].	2.62998e-125
NZ_CP010817.1\|WP_041888212.1\|29018_30527_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381615	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins. Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.04056e-63
NZ_CP010817.1\|WP_041888229.1\|43956_44709_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|273907	TIGR01978, Probable_ATP-dependent_transporter_SufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.41317e-141
NZ_CP010817.1\|WP_041895058.1\|30637_31537_+\|DUF4837-family-protein	gnl\|CDD\|379774	pfam16125, DUF4837, Domain of unknown function (DUF4837). This family consists of uncharacterized proteins around 350 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.	5.25074e-77
NZ_CP010817.1\|WP_041888236.1\|51787_52819_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.75268e-79
NZ_CP010817.1\|WP_041888220.1\|35262_37185_-\|M1-family-metallopeptidase	gnl\|CDD\|341067	cd09604, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains bacterial M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	5.95308e-149
NZ_CP010817.1\|WP_041888231.1\|44762_46082_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|376550	pfam01458, UPF0051, Uncharacterized protein family (UPF0051).	4.20539e-99
NZ_CP010817.1\|WP_041888210.1\|27771_28962_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP010817.1\|WP_006257901.1\|26100_27249_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	9.99961e-50
NZ_CP010817.1\|WP_041888214.1\|31588_33571_-\|KUP/HAK/KT-family-potassium-transporter	gnl\|CDD\|376906	pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.	0
NZ_CP010817.1\|WP_041888222.1\|37239_38853_-\|S8-family-serine-peptidase	gnl\|CDD\|173809	cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	8.63175e-109
NZ_CP010817.1\|WP_041888216.1\|33669_34539_-\|tyrosine-protein-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	8.48403e-82
NZ_CP010817.1\|WP_006257886.1\|46808_48503_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236378	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha.	0

>NZ_CP010817.1|WP_041888224.1|38929_39790_-|MBL-fold-metallo-hydrolase
MKLYAIESGNFKLDGGAMFGVVPKVIWNKTNPADANNLIDLGARLLLIEEGNRLILIDTGMGNKQSDKFFGYYNLWGDHSIDKSLAKHGFHRDDITDVFLTHLHFDHVGGAVDWNSDRTGYVNAFKNAKYWTNENHWEWATKPNAREKASFLSENILPIQESGALHFIPKTEGNILHNSELGFDIFFADGHTEKQMIPILNYKGKKIAYVADLLPTVGHIPLPYVMGYDTRPLLTLDEKEKFLKMAADENWYLFLEHDAHNEIITVQHTEKGVRLNENLKANEILI
>NZ_CP010817.1|WP_041888222.1|37239_38853_-|S8-family-serine-peptidase
MRLIKPLYLSAALALALTSCGTTSTITNTPISGVDNLPKRTTKLTEEQLRRWSHLDIINDTVPGMSVDRAYEEILKGKKLPKKVIVGVVDSGVEIDHDDLKTQVWTNPNEIAGNGIDDDNNGYIDDIHGWNFLGQSVHENVEMVRVIRRGDDGSDQYKRAVKEYDEEIKSNQESKLRVDMLLRANERIAKYLDKKDYTMDDLNSIPLDANEEIIHSKNVMYNILAGGRELSWLEAYKNSVESKAKHHLNLEFDGRKIVGDDHTDINDRIYGDNNVIGPVREEAKHGTHVAGIIAQTRGNNLGGDGVASDVAEIMAVRAVPDGDEYDKDIALGIRYAVDNGAKVINGSFGKYYEENSQWVRDAIKYAEEKDVLIVVAAGNDAMDLNIPGGVERYPNDNVKMGPEISNNFLVVGALNPEFGKNMVARFSNYGDYDVDVFAPGVKIYATVPTNSYEYLQGTSMASPNVAGVAALVRAYYPEFTAGEVKKIIMDSGVAVNFDVVVGEKKEIRNFQSISTSGKFVNAYNALLLAEKLSKAKK
>NZ_CP010817.1|WP_041888220.1|35262_37185_-|M1-family-metallopeptidase
MWSFDFKHIMKKILLTLAICSIALIDAIAQNNPNPGYWQQHVDYKMDVKMDVKKYQYTGTQKLTYTNNSPDTLKAVYFHLYYNAFQPNSDMDALLSNIADPDSRMVDTKTVRGRKVFESRITKLKDNEIGYLKVSKMMQDGEALETKEVGTVLEVTLKKPIAPKSSTVFTMNFDGQAPVMIRRAGRNSKEGVALSMSQWFPKIAEYDFEGWHAEQYLGREFHSVWGDFDVKITLDKNYILGGTGNIVNNNEVGYGYQDAGIDDNSIKKGKELTWHFKAENVLDFTWGADPNFIHDTYDGPDGVKLHFLYKNNPAIIDNWKKLQPVTAELMKFFNENVGPYPYNQYSVIQGGDGGMEYSMCTLITGERSFPSLAGVTAHELAHSWFQHALATNETKHEWMDEGFTSFISDLAMLKILPKDQQEDVNPFGSTYKSYYNLVSKGMQEPLSTHADHYMTNRAYSTSAYSRGSIFLTQLAYLIGWDNMMTTLRTYYNEYKFTHPTPNDFKRVAEKVSGAVLDQYLIDWTQTNNTIDYSILFVEEVQKNQTLVTLGRMGRMGMPLDILVEYEDGSIETFYIPYTSMHWIKPNQFVQYERTVLDGWGWAQPEYKFTINKPKGTIKKIVIDPSQFMADVNQENSIYTK
>NZ_CP010817.1|WP_041888218.1|34790_35192_-|ribonuclease-P-protein-component
MEQKKYNYPKKEKLKSKAVIEELFTTGKTVSKYPLRMVYVQTANQEDLPLKVGVSVSKRHFKKAVDRNYFKRLLREAYRQNKHLLLENIDKPYAMMLFYQSKDRLTFKDVNEKMIKLFEKFIDATTEKKEDNS
>NZ_CP010817.1|WP_041888216.1|33669_34539_-|tyrosine-protein-phosphatase
MQNLQKGHCLIETDSDVERSSTPNQSALDLNTTHKGLEVANNRLRHIPLQGQSNFRDLGGYQTEDNKTVKWGCLFRSGQLSNLTALDLDYLSSLPLTTIVDFRSEEESEEQKTLLPKTVTNEILLPITPGNLSKNQVMQIVQEGDIGLATKFLVDINEQLVLHNQSQYKAFFKEVECSEAPLMFNCTAGKDRTGLAAALLLSALGVNQHTVIEDYLLTNQYVNLDIQRIQKQFNLETQQAETLLTLFTVQEQFLDKALNTIEEYYTSVEQYLTEILEVDIALLKAKYLY
>NZ_CP010817.1|WP_041888214.1|31588_33571_-|KUP/HAK/KT-family-potassium-transporter
MQAQSSHGHSSQLNKITLGTLLVTLGIIYGDIGTSPLYVMKAIIGKEIIREDIVLGAISCVFWTLTLQTTIKYVFLTLKADNNGEGGIFSLYTLVKRLKKRWLIIPAIIGGSALLADGIITPPISISSAIEGLRIYEPNLQTIPIVIGIIFILFVIQQFGTKAIGKFFGPMMTLWFLMIGIIGLFHLMDNLTVLKALNPYYAVHLLSIHSEGYFVLGFVFLCTTGAEALYSDLGHCGIKNIRITWAFVKAMLVLCYFGQGAYLINFSNQTLLQLSPDNQNPANPFFLVMPEWFLPFGIAIATIAAVIASQALISGSFTLINEAIRLNLWPKVKVKFPTNVKGQLYIPSINWLLFLGCVFVVLHFEESGNMEAAYGLAITLCMIMTTILLGYYMYLKRVHIVVIVLVELIYLSLEVSFFIANVQKFTHGGYVTVIIASLLAGTMIINYLAKKIRKNYTEFVNIEQYKDILLDISGDTSIPKFASNLIYLTNSNTCSKIEYKALYSITQRRPKRADNYWFIHVNVSDQPYNLEYKIQKMGADNIIRVDFYLGFRNDQKISVLMKQVLKELTETGEVDVISKYTSLQKNNIYTDFEYVLIEKELSYDNELPAHETIILTLYEWLKKLALSEEKAFGLDSSAVTVERFPMVINPIDELPLHRRY
>NZ_CP010817.1|WP_041895058.1|30637_31537_+|DUF4837-family-protein
MDEPHQILIVINDRLWYGSVGDSIREHLAIPIEGITPPESTFSLEQISPNLFSSRTRNRRNIIVFSDNYNSNSFLFEKDKYTAGQMYFTVSGDSRKGLIKEFKNNADSIVNSILRSEFDVVARRILEGKIVDTDYFQDKFQVSLNLPTTYKLVGSNYHFVWFKKNIASGNSNILIYDVPIDRIENTEGTILNNLLAVKDSVNGKYIHSIEDNSYLRLNEGFIPNNKEFVRQGRKVYEFTGEWDMNNSFMSGPYMSYVFRDVSANRYLFIEGLVYNPAMGKRGILMEVESIVNSLKFNEN
>NZ_CP010817.1|WP_041888212.1|29018_30527_+|lytic-transglycosylase-domain-containing-protein
MNYKVLTLLACGLFSYSVMGQNEPSTLTEVSKKEMSPEVYLDSIKKTFVNHASSASIEKRWLNELLNQDLFNELENELADANFDEGDVRFDELPTELLKERLKRLNEKTPFNVEYNETLERVIKSFLKNRKRSFERLLGLSEYYFPMFEEQLAKQNVPLEVKYLSIVESALNPVARSRVGATGLWQFMYPTGKQYNLEVTSYIDDRIDPLKSSEAAAKFLSDLYGMFGDWDLVLASYNAGPGNVSKAIRRSNGYTNYWNIRPNLPRETQNYLPAFYATMYIFEYAKEHGITSKKAPIKVVETDTIAIKKTMSFDQIANLLDVSKEEIEFLNPTYKLQVIPYDSGKLNFLRLPVKKIGLMASNEEKMYAYVDFVDSKKEQPNYAVVAESIVESSSVNPRYHTIRKGESVGTIANKYGISVAQLKKLNNMKGNVIYPGKKLVVGKKAVAQASGGTKNNFYTVQRGDSLSSISKKFAGVTVSKLKSLNNMKDSDDIRPGMKLRLN
>NZ_CP010817.1|WP_041888210.1|27771_28962_+|phosphoglycerate-kinase
MKSIDSFDFKDQKVLVRVDFNVPLDENFNVTDTNRIEAAKPTIEKIVKEGGVAILMSHLGRPKGERNDKYSLRHIVAKTEEILGHKVTFVNDCVGSTVKEAIAASKAGDIILLENLRFYAEEEKGDEGFSKQLAELADFYVNDAFGTAHRAHASTTIVAKYFADKKCFGYLLAKEIESLNKVLNSTDKPVTAVLGGSKVSSKITIIENILDKIDHMIIGGGMTFTFIKALGGKIGNSICEDDKLELALDILKKAKEKNVQVHLPVDILAADAFAADANVQVVAANEIPDGWQGLDVGPKTLESLKPVVAESKIILWNGPLGVFEMEKFANGTIELGNFIAEATKNGTFSLVGGGDSVAAVKQFGLAPKMSYVSTGGGAMLEMLEGQVLPGIKAIQE
>NZ_CP010817.1|WP_006257901.1|26100_27249_-|DNA-polymerase-III-subunit-delta'
MQFSDIIGQSFLKNHLIQSAASGRVPHAQLFIGGEGTGTLPMAIAYAQYLLCKNTGNENTGGNDACNIKFNNLAHPDLHFVYPVATTEAVKRNATSDLFAEQWRSFLKTNKYGNLFDWYTHIDIQNKQGQIGVDEASEVLKKLALKSFEGGYKIMIIWMADKLNTEASNKLLKLLEEPPAKTVFILIAENEKNILQTILSRCQVLKFPPLNAIEIQEALIQREQCDPQEAIMIANQSQGSYNKALSLLHNKANALPYEKWFVQWVRAAFRAKGNAAVIQELIEWSEELAALGREQQKQFIEFCIELFRQALLLNYQTPELVYYKTTVDKFKLENFAPFVNGENINEIYQELGDAIYHIERNGNAKMIFTDLSIKLTRLIHKK
>NZ_CP010817.1|WP_041888225.1|40482_41007_+|hypothetical-protein
MNKKFKGVYNRSSNRAKWWDYTNDGTYFITICTRDMKHNFGYIFQDKMYLNDLGRCVLNCWFSIPHYYPFVVLDAFIVMPNHVHGILHINRGNDKTKNVDNIMEFKNVSGSLGSIIKGFKVGVKKDANSLGIAFFWQDGYHDHIIRTVSAYQNIANYIHTNPSRWNKDRFYNEF
>NZ_CP010817.1|WP_041888227.1|42008_42338_+|iron-sulfur-cluster-assembly-accessory-protein
MIKVSDIASKRVALLMEDEGFNHTTDYVRVGVTSGGCSGLSYQLKFDHEIGEDDKIFEDNGVRIAVDKKSFLYLVGTTLEYSGGLNGKGFYFNNPNASRTCGCGESFSL
>NZ_CP010817.1|WP_041895060.1|42443_43892_+|Fe-S-cluster-assembly-protein-SufB
MSKYTEEDLKKELETKEYEYGFYTDIESETFPVGLNEDIVRAISAKKGEPEWMTEWRLEAFRIWESMVEPEWANVNYTKPDFQAISYYSAPKKKDEYKSLDEVDPELIETFNKLGISLNEQKRLTGVAMDIVMDSVSVATTFKETLAEKGIIFCSISEAIKTHPELVKKYLGTVVPQTDNFYAALNSAVFSDGSFCYIPKGVRCPMELSTYFRINQAGTGQFERTLVIADEGSYVSYLEGCTAPSRDENQLHAAVVELIAMDDAEIKYSTVQNWFPGDSEGKGGVFNFVTKRGLCEKNAKISWTQVETGSAVTWKYPSCILKGDNSIGEFYSIAVTNNFQQADTGTKMVHLGKNTKSTIISKGISAGKSQNSYRGLVQMGPRAENARNFSQCDSLLMGNECGAHTFPYIEAKNTTAQIEHEATTSKIGEDQIFYCNQRGIPTEKAIALIVNGFSKDVLNKLPMEFAVEAQKLLEISLEGSVG
>NZ_CP010817.1|WP_041888229.1|43956_44709_+|Fe-S-cluster-assembly-ATPase-SufC
MLQIKNLHASVEDKEILKGINLEVKAGEVHAIMGPNGAGKSTLSSVITGNEAFEVTEGEILLDGEELGELGPEERAHKGVFLSFQYPVEIPGVSVTNFMKTAINESRKAQGLEEMPANEMLKKIKEKAELLEIDRKFLSRSLNEGFSGGEKKRNEIFQMAMLEPKLAILDETDSGLDIDALRIVANGVNKLKSEDNAVVLITHYQRLLDYIVPDFVHVLYDGKIVKTGGKELALELEEKGYDWIKASLEK
>NZ_CP010817.1|WP_041888231.1|44762_46082_+|Fe-S-cluster-assembly-protein-SufD
MELKDKLITSFVAFEQGLKGEHEGLHDIRLEALKTFEDKGFPTKKVEAWKYTSLNSILKNEFRVLQKEETAIEYKDVKKYFLSDSDTYKLVFINGVFSSHLSSTTHDGLDVCLMSSALTKPKYKMVIDAFYNTTADKTDSMTALNTAFATEGAFINIPKSKVVAKPIEIIYFSTVADKALLVQPRNLVVVGENAHVQIVERHQNLTNSTVLTNAVTEIVAHKRAIVDFYKLQNDNEEATLVDNTYITQKQESRVSVHTFSFGGKLTRNNLNFYQDGERIDSMLKGVTLISDKQHVDHYTLVSHNQPNCESHQNYKGIYDGNSTGVFNGKIYVDKIAQKTDGFQQSNNILLSEKATIYAKPQLEIFADDVKCSHGCTIGQLDDDAMFYMRQRGIPKKEAKALLMYAFTDEVMESVKVPELKSKVAKVIAGKLGVSMGFEI
>NZ_CP010817.1|WP_006257886.1|46808_48503_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNNFSLPLLTEDNDNLTEKLWWKNSESEQILNRGYLLKGETVEGAIDRIASAAARRLYKPELKESFQEMIERGWMSLSSPIWANMGTERGLPISCFNVHIPDGIEGITHKLGEVIMQTKIGGGTSGYFGALRERGSAVTDNGKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDCEEFLNIKNIGNPIQNLFYGVCIPDYWMQEMIDGDREKRQLWAKVLESRQQKGMPYLFFSDNVNGHKPQVYKDLNMRVNASNLCSEIMLPSSDDESFICCLSSMNLELYDEWKDTEAVKLAIYFLDAVLQEFIEKTEGNYYLAAANRFAKRHRALGLGVLGWHSYLQKNMIPFEGLQAKMLTNQIFDNISAKADKASQELARIYGEPEIMKGYGRRNTTTMAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLTKLLEEKGLDNEETWRTIMLNGGSVQQIEGLTEEEKAVFKTFKEISQLEIIQQAAVRQKYVDQAQSLNLNIPSALPIKEVNNLMIEAWKLGVKTLYYQRSQSVSKEMVTNLVTCSSCES
>NZ_CP010817.1|WP_006257885.1|48542_49520_-|ribonucleotide-diphosphate-reductase-subunit-beta
MSIFDKRVNYKPFEYPGIYQFTDAINKSFWVHSEVDFTADTQDFHSHLTKEEQLAIKHSLLAIAQIEVAVKTFWGNLYLHFPKPEFNGLGSTFAECEFRHSEAYSRLLDVLGYNDEFENLLTVPVIKERVEYLSEVLENSGNYTDRKKYVVSLILFSLLIENVSLFSQFAIILSFTRFKGLMKNVSNIIAWTSVDEQVHANAGIYIVNVIRDEFPDFFDDELINHVNEVIHKSIEIESRILDWIFSTGEIETVNKADLLNFMKFRVDESMQKIGLKKVFNITHEQYKPMAWFEEEVFANSLDDFFAKRPVDYTKHDKSFSADDLF
>NZ_CP010817.1|WP_041888234.1|49956_50997_-|hemin-degrading-factor
MSTSTQTLKERWDALKVTNPHIRIRNAAKELNASEMELLATQIGESVTRLKPEFEAILSEVETLGKVMALTRNDECVHERKGVYANPDFSSPHAGLFVNPDIDLRIFLSHWKKVFAVVEKAGDKDRMSLQFFGKDGEAIHKIYLVPQSNEEAFHALVKKYTSENQSTEETTEPYLHNLDERLDEEIDVEGFRTEWKELKDTHNFFSLLKKYNLTRTQALRLAPEEYYAKQITKDAIVTLLEGASEAQTPIMVFVGNKGNIQIHTGEVKRTMWHQNWYNVLDPDFNMHLDMDKIAQTWIVRKPTEDGIVTSVEVFNEIGEIIVQFFGKRKPGIPELEQWRELVAKLA
>NZ_CP010817.1|WP_006257883.1|51008_51785_-|heme-ABC-transporter-ATP-binding-protein
MIEAFKINYLAKGNYIINDIDFECKEGEFIAILGPNGAGKSTFLSILADELHEKGNKVLLKSCEYPKWCTKELPKHKAKFSQHHNGDIPLNVEDVVMMGRYPYFDHIPTEEDKTAVQQSMDCIDICPLQHREYNHLSGGEKQRVHLARVLSQLNNNVENKLLFLDEPLNNLDVLHQHRIMDIIKEFTSKGNTAIVVIHDLNLAAQYADKILLLQKGKKVIYDTPAEVLTQEIISEVYNFPCVVTKNPVSNNPLIIFGI
>NZ_CP010817.1|WP_041888236.1|51787_52819_-|iron-ABC-transporter-permease
MKTKLSFYAIVLSVILIVIAIASIFIGVYQFESGSLQTLYQILFTKQEVNPSDYYVFFDVRLPRVLMAILTGAGLSLAGTTLQGMFKNPLASPDLIGITAGSVLFAAVTIVLGSHIKSLIPEAVHYSLLSIMSFIGAIVTMTFVYKMSTTAGKTNISVLLLSGVAITSLTGAATGLLTYLSSDEELRNLTFWTLGSLAGATWTKVSILAVVILVSITLLINKGKALNAMMLGERDATHLGIPVEKTKKKIVLLSALMVGTIVAFTGTIGFVGLIVPYILRLVFKSNYYFILPLSTLCGSILLLVADTISRTLVPPSEIPIGILTSIMGAPVFIAILIKFKKSL

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Crispr_ID: NZ_CP010817_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_2

327618-327716

Orphan

Consensus_repeat	Method
CTGTAGAGACGCAATACTTTGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010817_2

>merge|NZ_CP010817|2|327618-327716|CRISPRCasFinder
CTGTAGAGACGCAATACTTTGCGTCTATCTGTTTGCAGTTTTTACCTGTGGTATTAGGTATAGGTAGGGTTTTTACTGTAGAGACGCAATATTTTGCGT

>NZ_CP010817|2|2|327618-327716|CRISPRCasFinder
CTGTAGAGACGCAATACTTTGCGT	CTATCTGTTTGCAGTTTTTACCTGTGGTATTAGGTATAGGTAGGGTTTTTA
CTGTAGAGACGCAATATTTTGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041895103.1\|319146_319737_-\|DUF1684-domain-containing-protein	unknown	unknown	gnl\|CDD\|377941
NZ_CP010817.1\|WP_041888583.1\|343118_343325_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041888561.1\|321913_322630_-\|3-ketoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|236074
NZ_CP010817.1\|WP_041888577.1\|339066_340206_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|366438
NZ_CP010817.1\|WP_041888581.1\|342753_343107_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367091
NZ_CP010817.1\|WP_006257622.1\|319835_320309_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP010817.1\|WP_041888567.1\|327060_327558_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239519
NZ_CP010817.1\|WP_041888569.1\|327792_328632_-\|DUF4349-domain-containing-protein	unknown	unknown	gnl\|CDD\|379526
NZ_CP010817.1\|WP_041888559.1\|321038_321758_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NZ_CP010817.1\|WP_041888584.1\|343405_344161_-\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
NZ_CP010817.1\|WP_041888564.1\|325238_326336_+\|DUF4369-domain-containing-protein	unknown	unknown	gnl\|CDD\|239264
NZ_CP010817.1\|WP_006257607.1\|333831_335025_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181244
NZ_CP010817.1\|WP_006262638.1\|323551_324730_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
NZ_CP010817.1\|WP_041888571.1\|329098_330058_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	unknown	unknown	gnl\|CDD\|273212
NZ_CP010817.1\|WP_041888563.1\|322696_323467_-\|DUF3050-domain-containing-protein	unknown	unknown	gnl\|CDD\|378614
NZ_CP010817.1\|WP_041888579.1\|340207_341482_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NZ_CP010817.1\|WP_041888573.1\|330054_333786_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NZ_CP010817.1\|WP_006257621.1\|320486_320963_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235640
NZ_CP010817.1\|WP_006266183.1\|341958_342666_-\|methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP010817.1\|WP_041888565.1\|326432_327059_+\|chloramphenicol-acetyltransferase	unknown	unknown	gnl\|CDD\|215002

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041895103.1\|319146_319737_-\|DUF1684-domain-containing-protein	gnl\|CDD\|377941	pfam07920, DUF1684, Protein of unknown function (DUF1684). The sequences featured in this family are found in hypothetical archaeal and bacterial proteins of unknown function. The region in question is approximately 200 amino acids long.	1.41187e-63
NZ_CP010817.1\|WP_041888561.1\|321913_322630_-\|3-ketoacyl-ACP-reductase	gnl\|CDD\|236074	PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	6.99475e-128
NZ_CP010817.1\|WP_041888577.1\|339066_340206_-\|PLP-dependent-transferase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NZ_CP010817.1\|WP_041888581.1\|342753_343107_-\|hypothetical-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	0.000238875
NZ_CP010817.1\|WP_006257622.1\|319835_320309_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	6.83011e-50
NZ_CP010817.1\|WP_041888567.1\|327060_327558_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239519	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases.	1.31116e-29
NZ_CP010817.1\|WP_041888569.1\|327792_328632_-\|DUF4349-domain-containing-protein	gnl\|CDD\|379526	pfam14257, DUF4349, Domain of unknown function (DUF4349). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 282 and 353 amino acids in length. There is a single completely conserved residue D that may be functionally important.	6.73291e-62
NZ_CP010817.1\|WP_041888559.1\|321038_321758_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	6.45721e-122
NZ_CP010817.1\|WP_041888584.1\|343405_344161_-\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	1.62872e-26
NZ_CP010817.1\|WP_041888564.1\|325238_326336_+\|DUF4369-domain-containing-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.22488e-08
NZ_CP010817.1\|WP_006257607.1\|333831_335025_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181244	PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.	2.63761e-176
NZ_CP010817.1\|WP_006262638.1\|323551_324730_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0
NZ_CP010817.1\|WP_041888571.1\|329098_330058_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	2.17693e-103
NZ_CP010817.1\|WP_041888563.1\|322696_323467_-\|DUF3050-domain-containing-protein	gnl\|CDD\|378614	pfam11251, DUF3050, Protein of unknown function (DUF3050). This bacterial family of proteins has no known function.	9.87724e-147
NZ_CP010817.1\|WP_041888579.1\|340207_341482_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NZ_CP010817.1\|WP_041888573.1\|330054_333786_-\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP010817.1\|WP_006257621.1\|320486_320963_-\|hypothetical-protein	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	0.000621043
NZ_CP010817.1\|WP_006266183.1\|341958_342666_-\|methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	6.57997e-59
NZ_CP010817.1\|WP_041888565.1\|326432_327059_+\|chloramphenicol-acetyltransferase	gnl\|CDD\|215002	smart01059, CAT, Chloramphenicol acetyltransferase. Chloramphenicol acetyltransferase (CAT).catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT. evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see ). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen.	7.4427e-76

>NZ_CP010817.1|WP_041888567.1|327060_327558_+|NUDIX-domain-containing-protein
MSTTAVPLGIKRIATLCVLRNGNNFMLLKRLKEPNKDTYTPVGGKIEPFETPEEGVIRETFEETGIRVDKVKFCGILTETSPVKYNWLSYVYVADIDAVTPPECNEGTLEWIAYEDLLNVPTPKTDWFIYKYILEGKPFVFHALYDGELNLLEMKEEISNEELGI
>NZ_CP010817.1|WP_041888565.1|326432_327059_+|chloramphenicol-acetyltransferase
MRTKIDTTQWERGEQYAFFKQFTEPFFGITVQVDCTTVYNRAKANKDSFFLTYLHDALRAANEVEAFRYRIVDNEVYLYDEVHASPTINRPNGTFGFAYMNYYADKKTFFAEAKKEIKSVQQSTSLLPASNSENVLHISALPWLDFTSMSHARNFDFPDSCPKISFGKVMEENGRKRMAVSIHGHHALMDGYHVSQFVERFQELLNEQ
>NZ_CP010817.1|WP_041888564.1|325238_326336_+|DUF4369-domain-containing-protein
MNNKLMMLIALFFSVGIMAQDKLHITGKITGIPKEAKLMLSYDKKEIELKAIDGVFVVEAEIVKAPTPVYLSIMKGDDYEYTSFFLGNETVTIDGRFDDLKSLQAKGSRYDTLRYESEILTRELRTERQTIESKVSKEVDSGMSYDNAMAPYKVEYLRIEQKIKDLDYEFLKKNINTDYGRYLVGFIMHDTNTNHYKELYDLVDSQYQNTDPIVFLKALIDNKVLVKGGSYYDFTALDMNEKEVTFSDYFKGKYVLLDFSSPYCYFCQQAVPITSKLAKALEDKLVYVTYCIENDLHSVEKYRGLKGDHGVIVWDKRGMQSPTIAKYRMSGTPYYALFNLEGRLLKIFDKGLEEDFEEQLRALMK
>NZ_CP010817.1|WP_006262638.1|323551_324730_-|acyl-CoA-dehydrogenase
MRPDLFQAPDYYLLDDLLSDEHKLIRDTARAWVKKEVSPIIEDFAQRAEFPKQLIPGLAEIGGFGPYIPTEYGGAGLDQISYGLIMQEIERGDSGIRSTSSVQSSLVMYPIWKYGNEEQRMKYLPKLATGEYIGCFGLTEPDHGSNPGGMLTNFKDMGDHYLLNGAKMWISNAPFADIAVVWAKNEEGRIHGLIVERGMEGFTTPETHNKWSLRASATGELIFDNVKVPKANLLPNKSGLGAPLGCLDSARYGIAWGAIGAAMDCYDTALRYSKERIQFDKPIGATQLQQKKLAEMITEITKAQLLTWRLGVLRDEGRATSAQISMAKRNNVAMALDIARDARQMLGGMGITGEYSIMRHMMNLESVVTYEGTHDIHLLITGMDVTGFPAFK
>NZ_CP010817.1|WP_041888563.1|322696_323467_-|DUF3050-domain-containing-protein
MTIQEINAQIAEERNALLQHPLYNKIKTIPHLCTFMEGHVYAVWDFMSLLKALQQQLTCTTTPWFASEFPQTRYLINEIVLAEESDLAYDGQRLSHFEMYLDAMITAKADTTAIEALIRTLKSGTPIFEAIAQTDLDEGVKEFLNFTFKTIEGGKAHEIAAAFTFGREDLIPDMFTEILKGFQQNFPETDLTKLVYYFERHIELDGDEHGPMAMKMISELCGDDQQKWQDVITISKQALIKRYNLWNSIENFIDIK
>NZ_CP010817.1|WP_041888561.1|321913_322630_-|3-ketoacyl-ACP-reductase
MKLKGKNAIITGGGRGLGKATAVAFAQEGINVAITGRNEKTLQATVTELEALGVKATYAVFDVTDKAKVKAEIAKLIETLGGVDILVNNAGISEFGKFTDMSAERWEEILLTNVMGVYNVTREVLPHLIDQNEGDIFNVASTAGLNGNATTSAYSASKFAVIGMSESLMKEVRKNNIRVCTLTPSTIASDMSIELGLTDGNPDHILQPEDFAELIVATLRLPRRAMVKTASLWTTNPQ
>NZ_CP010817.1|WP_041888559.1|321038_321758_-|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MIRKITRFFLKLALLFFGLSIFSVLVFRFVPVPYTPLMFIRLYEQVKDGKPMTLQHKWVPLDEINVNLQKAVIASEDGHFLTHNGFDFKAIEKAMKNNEKGKKIKGGSTISQQTAKNVFLWPGRSYIRKGFEAYFTVLIEFLWPKERILEVYLNSIEMGDGVYGAQAAAKHWYNKDAKNLTANQAAGIAVILPSPRRYKANNSGPYIAKRKNTITRYVNNFGPLDFNKKEANKKENKKK
>NZ_CP010817.1|WP_006257621.1|320486_320963_-|hypothetical-protein
MKKVLLSFAVVGLLFATSCKDTKAEETTPAVENTEATTEESAAVSEFEKAKTEAETKLADAKKAVEEAVKKGDKKAQEEANKALEAAQKTWDDAKAKFEEVSKKAGDAVENAKDATEEKVEEVKDATEKKVEEVKEATEKKADEVKGAMKDAADKLKK
>NZ_CP010817.1|WP_006257622.1|319835_320309_-|DNA-starvation/stationary-phase-protection-protein
MKTNIGLTDNARQFNAEVLSKLLADEFILYTKARNAHYNVTGVDFHSKHVYFEELYTELAVNVDAVAERIKTLGHYAPSSLKDYLKLTHLTEERKTTDTDSKSWIAELLIDYEVIVSFIRQNIDAIEESNDKSTADFLIGLMEAHEKTAWMLRSHLG
>NZ_CP010817.1|WP_041895103.1|319146_319737_-|DUF1684-domain-containing-protein
MLGAVLSLLVSCSQPKTDIERAEVFQKELNKEFSDSKTSPLPKDALKKFKGLDFFPITEDYIVEAKLVRTPDEKPFTMPTTTSNKLNYVKYGELHFTLDKKEHKVDVFQDLDILKKEDYANHLFLPFTDLTSGVTTYGGGRYIDLEIPEGDLITLNFNQAYNPFCVYNPKYSCPIPPEQNFIEVEINAGVKNYKYE
>NZ_CP010817.1|WP_041888569.1|327792_328632_-|DUF4349-domain-containing-protein
MKKTLKLLTLMLFVALASCSKSAEYGETSAVALEDISTTDAAAETTTEAPQSTDSTQDITVPERMIVKEGNIRFETSNAQETRANIVASSKKLNGYLSQDTSNVYGNRTEHTIVIRVPAKNFEALLEGVTQTATKVDSKNINALDVTEEFIDVEARIKTKKEIEERYKELLKRANTIDDILRIERELGALRADIESFEGRLKYLKSRISLSTLTVTFYEKGESTTGFGYEISSAFGSGWSNLLSFVIGLFYIWPFILISIGLILIIRRIRKRRKQNNIN
>NZ_CP010817.1|WP_041888571.1|329098_330058_-|methylenetetrahydrofolate-reductase-[NAD(P)H]
MKVTEHIQKANGKTQFSFEILPPLKGQNIQGIFDSIEPLMEFDPPFIDVTYHREEYEYKEAGNGLWEKRTVRKRPGTVGICSAIQNRFKLDAIPHILCGGFTKEDTENFLIDLDFLGIDNVVALRGDAVKNETYFKPEPKGNKYASDLVTQISELNQGIYLDPELENTSKTDFCVGVAGYPEKHMEAPNFDTDLKYLKQKIDNGAEYIVTQMFFDNSKFFAFVDKCRAIGIDVPIIPGLKPLATLSQLNLLPQRFKVDLPDDLVTEVLKAKDNAAIREIGIEWCAQQSRELIEAGTPIVHYYSMGKSDNIKNIIKLATV
>NZ_CP010817.1|WP_041888573.1|330054_333786_-|methionine-synthase
MSTTLIHTDIRSLLKQRTLVLDGAMGTMLQAYRFSEEDFRGERFADFAHPLKGNNDLLSITQPDAVKEVHRQYLLAGADILSTNTFSGTTIAMADYHLEDIVYELNYQSAKIAREVADEVEALDPDRPRYVAGAIGPTNKTASLSPDVNNPGYRAITFEELRIAYKQQAEALLDGGCDLLLVETIFDTLNAKAALFAIDEIQAERGIDIPIMISGTITDASGRTLSGQTVEAFLISIAHIPLLSIGFNCALGAEQLEPYVKQLSQHAAVNISAHPNAGLPNAFGEYDQTPTEMKELIDSFLSQNLVQIIGGCCGTTPEHIRLIAQAVAEHSKDRQPKQFKLKPVLALSGLEPLYVTAEANFINIGERTNVTGSRKFLRLIKEEKFDEALAVAREQVEGGAQVIDINMDEGLLDGVHCMTNFLNLIASEPDIAKVPIMIDSSKWEIIEAGLRVVQGKAIVNSISLKEGEELFIEHAKLIKRYGAASVVMAFDEKGQADSLERRIEICQRSYDILVNQVNFAPQDIIFDPNIFPVATGMEEHNNNALDFFNATKWIRENLPYANVSGGVSNVSFSFRGNNKVREAMHAAFLYHAIQHGMNMGIVNPEMLEVYDEVDKDLMEHVEDVLLNRRDNATERLLDFAESIKNESAIQSTEIKVEEWRSGSIQDRLTHALVKGIETYVIEDTEEARLSVPQPIQVIEQYLMNGMNVVGDLFGAGKMFLPQVVKSARVMKKAVAYLLPFIEESKKQNAEASVGNAGKILMATVRGDVHDIGKNIVAVVLACNNYEIIDLGVMVSPEKIIETAIKEQVDIIGLSGLITPSLDEMVHLAKELDKVNSNIPIMIGGATTSRVHTAVKIAPEYKNCVVHVHDASRSVTIANQLLQKEIEATFKDNIREEYDQLRRDYLGRARDKSYITIEQARANKVKIEWDAKDIVKPNFIGTKTVTVELDELLPFIDWAPFFRSWQLYGKFPQILTDEVVGQTATQVYDDALIMLDKIINERWFEARGVLGIFPANQVNDDDIEVYNEQGETLDKLLTLRQQSLKNIKAPNIALADFVAPKESGLEDYIGLFAVSTGFGVDEIAKEYEDDLDDYNAIMVKALADRLVEAFAEYLHHRVRKEIWGYASAERLSNEELIKEAYQGIRPAPGYPACPDHLEKGTIWKLLQVEERIGVSLTESYAMFPAAAVSGYYFAHPQSRYFGLGKIEQDQLEDYAIRRNISIEEAERWLSPNLAQNNKLTTNES
>NZ_CP010817.1|WP_006257607.1|333831_335025_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MNTRNNEEGCCFETQAIRTQTERSQYNEHSTPLYLTSSFVFDDAENMRAVFAEEIQQYSYSRFTNPNQTELVEKIRIFEKAEAGFAFATGMAAVYCSLFPLLKTGDHIVSCSNIFGSTRGLFSNTFPEWGVETSYFDLNQVYDVERLIKPNTKILFAESPTNPGVDVLDLAYLGEIAKKHNLIFIVDNTFATPYLQNPITLGAHIVVHSATKLIDGQGRACGGVTVGYKEYIHKIYLFARTIGASISPFNAWVLSKSLETLAIRVDRHCENALTIAEYLEKHPAVEFIKYPFLPSHPQYEIAKKQMKQGGNIIAFGIKGGLDAGRTFLDALQLCSRTANLGDSRTIVTHPASTTHSKVPAEEKIATGITDNLIRLSVGLENTKDIIRDLEQALTAAQ
>NZ_CP010817.1|WP_041888577.1|339066_340206_-|PLP-dependent-transferase
MSTQTDILKHIPIDPHTGAIAVPIYQTTTFAQEAPGVNKGFDYTRTNNPTRQALEELVASLENGAKGFAFGSGLAAIDAVFKTLSQGDEVIAVANIYGGTYRLLNEVYAKFGIKTHYVDTTVAANVEKAINDKTKLIWIESPTNPTLRISDIQTITSIAKQHKVWVCVDNTFATPIAQKPLDLGADIVVHSATKYIAGHSDVVAGLVITKTEEIGKIIKFHQNSTGAILSPFDSFLTIRGIETLLLRYKGYSENAIQIAEYLSTHPKIDKIYYPGLKSHEGHELAKKQQKYFGGVISFDLKENTREAALQVIQSLKLFTLTEGLGGIKSLSNYPFEMSHGSVPKETKIQAGITESLIRLSIGLEETEDLIEDIKQALAQ
>NZ_CP010817.1|WP_041888579.1|340207_341482_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MSNLNFSTQALHAGHNVQSTAGTRAVPIYQTSSYVFENADHAAGAFNLSIPAYIYTRLNNPTNDILEQRLAALEGGIGAVVTASGASAISTTFLTLLKAGDHIVSSNSLYGGTYNLFNVTLPRFGINTTFVDPSDVENFRTNIQENTKAIFVESLGNPKLDIINLKAVAKIAQEFKIPFIVDNTVASPALLNPIEYGANIVVHSLTKYITGNGTSLGGAIIDAGTFDWSSGRFPEFTEPSPGYHGLIYHQALGNAAFIAKIRVEGLRDLGAALSPFNAFQIIQGLETLPIRIQKHSENALALAEWLEKQDAVAWVNYPGLKSSPYHDLAKEYLPKGQSGVVTFGLKKGFEAAKTVANETKLFSLLANIGDTKSLIIHPASTTHQQLSVTEQKATGVSPDLIRLSVGIENIEDLKADLANVFKTL
>NZ_CP010817.1|WP_006266183.1|341958_342666_-|methyltransferase
MFQFKQFTIQQDKCAMKVGTDGVLLGAWTPIDNNPYNVLDIGSGTGLLALMMAQRTGAEQIDGVEIDENAHEQAVENFENSPWGDRLFCYHADLETFANEMEEEYDLIISNPPFYSEDYHTNDKQRDTARFQDAMPFDLLIEAVEYFLSEKGVFSVIIPAKEEETLMRLAAEFGIYPFKVTRVRGNEQAEIKRSLIAFSRQLVEKIPLDELTIEVERHQYTPAFEALVRDFYLKL
>NZ_CP010817.1|WP_041888581.1|342753_343107_-|hypothetical-protein
MNYKQRDLVLVKFPFTDLTGFKVRPALIISNSSVHKSKDYIIMMITTQKIGGSFGVAFDNTDLTIPLKAPVTKGYIYTKKLAVLDESIIYKKISEFQNLTKFQNILDLHIDNIALED
>NZ_CP010817.1|WP_041888583.1|343118_343325_-|hypothetical-protein
MMTNTLKVIDPNIIKAEDNTSADSSCIVDNIADSLLSLSELDKTTDLISSIAFAKEWEQENDEYWDSY
>NZ_CP010817.1|WP_041888584.1|343405_344161_-|GLPGLI-family-protein
MKKYLFLLLIMTSSFAQNTPEVEVMRYNYKTIIANGSKKLVRDGNAILDIKDKESRFTDLMNYSFITSQKTDNPEKGNQGTFKWTVYADGTTTSFYDKIGLDLSYYEEDKNSIKWTILPEVKDWNNYKVQEATATYGGRAWTVLFTQDITVQSGPYKFINLPGFVVKAWDSENHFVFELLDSQKVSTSWDIVTDDKYTKYSKDQTNKARKVAASKTYAQLLEEKGTVLNKATAEYFNRKVGDSENPIERDF

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Crispr_ID: NZ_CP010817_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_3

649051-649155

Orphan

Consensus_repeat	Method
GTAATCTGGGACTTATTCCAACAGATGTAATATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010817_3

>merge|NZ_CP010817|3|649051-649155|CRISPRCasFinder
GTAATCTGGGACTTATTCCAACAGATGTAATATCGTAACATTCTTTAAATATCTCTGTGAGTGCAGGGATTGTAATCTGGGACTTATTCCAACAGATGTAATATC

>NZ_CP010817|3|3|649051-649155|CRISPRCasFinder
GTAATCTGGGACTTATTCCAACAGATGTAATATC	GTAACATTCTTTAAATATCTCTGTGAGTGCAGGGATT
GTAATCTGGGACTTATTCCAACAGATGTAATATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041888965.1\|648035_648323_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041888951.1\|638604_639942_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP010817.1\|WP_041888982.1\|656013_657780_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|273226
NZ_CP010817.1\|WP_041888968.1\|649548_650490_+\|DUF3806-domain-containing-protein	unknown	unknown	gnl\|CDD\|372263
NZ_CP010817.1\|WP_041888977.1\|654188_654749_-\|DUF1543-domain-containing-protein	unknown	unknown	gnl\|CDD\|369429
NZ_CP010817.1\|WP_041888987.1\|660596_661394_-\|DUF2797-domain-containing-protein	unknown	unknown	gnl\|CDD\|378524
NZ_CP010817.1\|WP_041888962.1\|644684_647282_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP010817.1\|WP_006266334.1\|637685_638474_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP010817.1\|WP_041888984.1\|657915_660546_+\|membrane-protein	unknown	unknown	gnl\|CDD\|379224
NZ_CP010817.1\|WP_041888970.1\|650594_651647_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP010817.1\|WP_025125346.1\|652720_653251_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP010817.1\|WP_006257297.1\|647353_647872_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP010817.1\|WP_041888954.1\|639941_641015_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP010817.1\|WP_041888959.1\|643835_644207_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041888980.1\|654738_655887_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|224345
NZ_CP010817.1\|WP_041888973.1\|651753_652599_+\|DUF3806-domain-containing-protein	unknown	unknown	gnl\|CDD\|372263
NZ_CP010817.1\|WP_041888957.1\|641004_642600_+\|beta-carotene-15,15'-monooxygenase	unknown	unknown	gnl\|CDD\|129794
NZ_CP010817.1\|WP_041888945.1\|635684_635999_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_025125345.1\|653420_654143_+\|DUF3667-domain-containing-protein	unknown	unknown	gnl\|CDD\|378853
NZ_CP010817.1\|WP_041888948.1\|636261_637194_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_025125346.1\|652720_653251_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	1.03607e-51
NZ_CP010817.1\|WP_041888951.1\|638604_639942_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.36735e-24
NZ_CP010817.1\|WP_041888982.1\|656013_657780_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|273226	TIGR00705, Protease_4, signal peptide peptidase SppA, 67K type. This model represents the signal peptide peptidase A (SppA, protease IV) as found in E. coli, Treponema pallidum, Mycobacterium leprae, and several other species, in which it has a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half. This enzyme was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	5.87337e-138
NZ_CP010817.1\|WP_041888968.1\|649548_650490_+\|DUF3806-domain-containing-protein	gnl\|CDD\|372263	pfam12713, DUF3806, Domain of unknown function (DUF3806). This family represent the C-terminal domain of the structure. In two related Bacteroides species the gene lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1ma7 whose C-terminal domain is a phage integrase, pfam00589.	2.25732e-10
NZ_CP010817.1\|WP_041888977.1\|654188_654749_-\|DUF1543-domain-containing-protein	gnl\|CDD\|369429	pfam07566, DUF1543, Domain of Unknown Function (DUF1543). This domain is found as 1-2 copies in a small family of proteins of unknown function.	3.86283e-13
NZ_CP010817.1\|WP_041888987.1\|660596_661394_-\|DUF2797-domain-containing-protein	gnl\|CDD\|378524	pfam10977, DUF2797, Protein of unknown function (DUF2797). This family of proteins has no known function.	1.11045e-126
NZ_CP010817.1\|WP_041888962.1\|644684_647282_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP010817.1\|WP_006266334.1\|637685_638474_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	9.81272e-25
NZ_CP010817.1\|WP_041888984.1\|657915_660546_+\|membrane-protein	gnl\|CDD\|379224	pfam13502, AsmA_2, AsmA-like C-terminal region. This family is similar to the C-terminal of the AsmA protein of E. coli.	3.74287e-28
NZ_CP010817.1\|WP_041888970.1\|650594_651647_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.78658e-38
NZ_CP010817.1\|WP_006257297.1\|647353_647872_-\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	1.04292e-05
NZ_CP010817.1\|WP_041888954.1\|639941_641015_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	6.00173e-69
NZ_CP010817.1\|WP_041888980.1\|654738_655887_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|224345	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism].	1.85793e-50
NZ_CP010817.1\|WP_041888973.1\|651753_652599_+\|DUF3806-domain-containing-protein	gnl\|CDD\|372263	pfam12713, DUF3806, Domain of unknown function (DUF3806). This family represent the C-terminal domain of the structure. In two related Bacteroides species the gene lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1ma7 whose C-terminal domain is a phage integrase, pfam00589.	8.85747e-14
NZ_CP010817.1\|WP_025125345.1\|653420_654143_+\|DUF3667-domain-containing-protein	gnl\|CDD\|378853	pfam12412, DUF3667, Protein of unknown function (DUF3667). This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. There is a single completely conserved residue P that may be functionally important.	1.09621e-07
NZ_CP010817.1\|WP_041888957.1\|641004_642600_+\|beta-carotene-15,15'-monooxygenase	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.61216e-11

>NZ_CP010817.1|WP_041888965.1|648035_648323_-|hypothetical-protein
MTKKVLNHLALLTILNNLVFVVIFQGSLIADFVQSPKYVHLIEFAWILCLTGLIIFPTIICTLLESKQISVQKFPILAILLSIISIIFFACASIS
>NZ_CP010817.1|WP_006257297.1|647353_647872_-|FUSC-family-protein
MVRTLITRIITSPVIIYTTRCFIGFYIGYLLFLKYPNYEILWTLISIMLVISPEGQNSKKLSVERFKSNLVGSAVGLVCLEIHPSPDFYISLLGVFLTIMTCYLFKILNMARVALVALIIILVQPHTASSVEATPLFRCLAVTLGCVIGLTITVLTSMIIRRLKRYYGIPLS
>NZ_CP010817.1|WP_041888962.1|644684_647282_-|DNA-mismatch-repair-protein-MutS
MTAKAKAPKETPLMKQYNDIKAKYPDACLLFRVGDFYETFGEDAVRASKILGITLTKRSAGTASETELAGFPHHSINVYLPKLVKAGLRVAICDQLEDPKTTKTIVKRGVTELVTPGVALNDEVLHSKSNNFLCAIHFAKKTIGISFLDVSTGEFLTTEGDQDYIDKLLQNFAPSEILVQKSNKTHFLQNYGTTYNLFLLDDWVFKTDFAFESLTTHFKTNSLKGFGVEDLVEGTIACGAILYYLSETQHTRLEHISNIQRIAEDAYVWMDRFTIRNLELYNSANLNAITLLDVIDKTLSPMGGRLLKRWLALPLKDTKKITDRHNIVEILKENNELLTLFQTQIKKISDLERLISKIATGKVSPRELIYLNDSLDAIIPIKETAQKSNNDSLKQMGNTLHGCELLREKIRATISEDAPVAIAKGNAIAQGVHPELDELRKISTSGKELLEAMEIRESEKTGIPSLKISFNNVFGYYIEVRNTHKNKVPAEWIRKQTLVNAERYITEELKEYETKILGAEEKIYKLENELFEQFVAWCAQYIKPVQLNANLIAQLDCLSSFAQQAIENNYVRPLIDDSYELDIKDGRHPVIEKQLAYDTPYITNDVYLNNKEQQIIMITGPNMSGKSAILRQTALIVLLAQMGSFVPAREVRMGPVDKIFTRVGASDNISMGESTFMVEMNETASILNNISDRSLVLLDEIGRGTSTYDGISIAWAIAEYLHQHPGKPKTLFATHYHELNDMSQNFDGIKNYNVSVKELKDNVLFLRKLVPGGSAHSFGIHVAKMAGMPTTVLKRAEKMLKQLEKGHAKDQQPLKAVENDLQLSFFNLDDPLLEELKEDILAIDVNNITPIEAIMKINELKKKLK
>NZ_CP010817.1|WP_041888959.1|643835_644207_-|hypothetical-protein
MSAFVISLKDNGKYKYTFEHRRGKTLMTSVEYPSVEAIHSTIEFLRTNYDSLNFIKFKTPSGKSYFRLAIDKKIYANSRRFNTELRFEKAMDEIKSNFANAEILDLSLDIFGSFPSEDIFDAE
>NZ_CP010817.1|WP_041888957.1|641004_642600_+|beta-carotene-15,15'-monooxygenase
MQNNEASQLFVDWIPEWMIHVILFVLLMPSIVLFFLPAANATAAAGYFGCDPRDIQFSVSLLYAGFVSFYSLERRFFTYLATKEYFILFNVLQIVGCIVLYNVQALCIVFPVRFLQGMLFASTVNLSISTLYVRLDSSKAREISFSCFYGILICATPFNQLITSDLVDQYDYSFLYKIASFSFIPGLILIMLTMRFVRLQRKLPLYSLDWESFVLFSVVVVLFGYLTIYGQQYYWFEDRDIRLIGLTILITLFFFVWRQKHLKRPYINWHVWKYRNFKIGLFLLFILYICRFASGITNTHFINSLHLDPRHLSYLNSFNLIGLVTGVILACVWLINRRPMRFIWSLGFIALFLFHVGMYMQFAPSANPDDYYLLLFCQGLGVGVLMVPIIVYCVTSVPVSLSASAAAVCLGVRYFGYTCSIAIMNYYSLYSSNRHLSRFLDYLNIANPILETKLTQNTMKLKSRGMPSSIAEKASEKIMLSDLSKQIELRYAMDYFEILSLLLLVIIILVLFTPYLSKTWVYLKSKSVSPF
>NZ_CP010817.1|WP_041888954.1|639941_641015_+|HlyD-family-secretion-protein
MDIKTRIKITDRLITRITRYLASIIILIGSLWGIHTLWMYWKYEQTNDAQVQEYINPVISRVGGFLTEVRFEENQIVNKGDTLLVVDNREYTYDQATTSAEIAKQYALIKELDARQYTLSQTAAAAKSQIQGRESKYHQQELDYQRYKKLYEEDAATAQMLEEKQAQLNIGQSDYNTSVEHARAATASIADIEAQKQVLLKEITRLQELEKYKNLTVGYAVITAPYRGRMGKRSIDLGQMISVGQVLTYIVNDETPKWIIANFKETQIRNIQIGHQVEVVADAYPDRQFIGKVISIAPATGSSFSLLPPDNATGNFVKIVQRIPVRIEIISPADSEELLKAGMNVNVFIAKKQSNAK
>NZ_CP010817.1|WP_041888951.1|638604_639942_+|TolC-family-protein
MKLGDFHLLAVLTSCVTMGYCQSTTLSISNKDTIQLSLQEIWEQTDLGSKRSLIQAKELQIRKENTDDARIGRYPVFNAFGKAEKASNIPVYTNGIFNKPEQHDVIHTLYNTGVSMYLNLYSGNRQNLEIVERKTLEAKANIEADMTKSEVRLEAIKSYLALAKLSRFKKVITQDIAEHKEQLIEIEHLYKNGVVLKSDVLRVTMEISKREMTLVQLQNDLSIENQKLVILTGRKDTDFIKPQDSFNEELFLESYDEALDIALEHGFKHLLSEESLVLSEIEQKKVKANTKPSIGLIGNFTMANPQIFLYPYNPSWYSLGTIGVQISFPISNLYQNVHKVRSRALEHEKEELQHQYVQDQIKEEVQQAYLRYQESLVQIEVCTKNKEHAAENARITKSTYFNKISLLTDLLDADVQHLQTQFELEAAKLDSIYKYYTLQFAKGLL
>NZ_CP010817.1|WP_006266334.1|637685_638474_-|helix-turn-helix-transcriptional-regulator
MKIIDSLEFIDSIEEGVFINHEKSTKRYPLHQHQKGQLTYVEGGITYVTVDNVTYVVPAKYFFWIPEGVPHILRLSNSATVLHSLYFYTSDDDKDPFYTTLGIYAASDLLIEMIAYTVCWHDKMVNQDTPNFVFLQALKNILPTFINKNIQLQLPFSDNPRITKITDYLDSSFGLPLTLTDISNKFNMSERSVSRLFQAELQISFLQYLKALRIVKAIELLMKTEHSVSEIANTVGYVTLGAFSNAFCEFTGTRPLEMRKNK
>NZ_CP010817.1|WP_041888948.1|636261_637194_+|hypothetical-protein
MTLLTINDYTDSLKKHINKVQDLPQYTVLLSPSPAQLRNYCIGLCKEDLSPDDKIILKDFFRGDSTELNDIVKSINRFELGWFKPIQSFLGKKTDTSKNHAVLEMVALMYDYEPRPYGKFRKSSVEIEEGSVADEQADSIIVEEKREAVEEKTIEDHIPPVQSFAESLPTTTAKNKFKRNLLIVTVIIIGLLGVGSLASSMLSNDQCMKWEGDRYVAYDCGEATIKSFAGVSSEPVPYDKSILKNFKQISVDCDTEFFRKGKPKVWFVKTGEGKHDYFNNPGTGVHPISGKSLRPITQYHLNKYIYSKCK
>NZ_CP010817.1|WP_041888945.1|635684_635999_-|hypothetical-protein
MKKSVKVAMLLGVITLSMVSCDKDDNQLQMKKEVKVNGVDQEMDHDWGHPPIKPPKTNSLNIEQEVDHDWGHPPIKPPKTNSLNIEQEVDHDWGHPPIKPPKIQ
>NZ_CP010817.1|WP_041888968.1|649548_650490_+|DUF3806-domain-containing-protein
MILSRYSNGLNNIFEINKREIMKVFEIGSGQTIIKGPSHYYSCNDGDSTVILYRGEHDDEPLIRFSVISFTRAEGVTQKALLQDFKDKAHQKNTEAVTYKGKSYFCYASEDQEELYMHIFEVMYGDDIIIGSLTANKEDRDSDEVAVYLKEIEEMIRSIDSLSSLQFPLLEPKYDDLVRLETESVKVLGIASEDLQAYHESGDAIKKLQEILNLREYAVNDYEYHQALGILFGACFQYRYSDFHWIVVHDQYGREMALQYQDYALQCFPITMITKRIEDEVDIDVIALIEEVVQHIEVAIESDKGYTRLEYNY
>NZ_CP010817.1|WP_041888970.1|650594_651647_+|serine-hydrolase
MNTKILLLVMMLSSVVFGQEIQGYKLDHYLNELSKNNTEAGSLSIFKKGVEVYHKNFGQENLPDTSSDENKMYQIGSVTKLYTAVIIFKLIEEGKLELTTKLSDFYSDMPNADRITIKNLLDHSSGLGSYVVKNGEVWVTEKVTEQEILNLIKEQGVKFAPDTDRAYSNSAYYLLTKIIEEVTDKPYHLLVNQYIVNPLRLESTYSAKSMPIYVHKPYQFKHGQWAEMVDINPMNIIGVGDLTTTTKELNIFIYNLFQGKIITSASLESMLPQKIEGKFGRGIMYLVYDNVSFYGHGGDTLGTHTMLVYNPDDEVSIAYSSNAQQVPDQVFKGIVNILYPNGYKILKGED
>NZ_CP010817.1|WP_041888973.1|651753_652599_+|DUF3806-domain-containing-protein
MQYIDLGVEKLVLVIPDEYDVELADYGGFILTKDGVSYLPYISVYEIRTVGGEDFDFEQVLEDFTTEASHIEEEVKEVGDKFYYMTELEIEDLYIYEYSVLYNNVRFELQLFISQSDVNSELASDYLEETVQMIEYVGIVLNEDHSSQALTPEELEFIESSVSKLLGANQYELKSVFDSGKALDILQWLFDEQCFDLKDKEYLGKLGLLFGALLRYYYIDFEWVGVEGDLGYEYALQYKDTEVVIFPISLVVSRLEAGEHIQIARLLDKIFQSVEDQFEEE
>NZ_CP010817.1|WP_025125346.1|652720_653251_+|YceI-family-protein
MTNTVWNIDPTHSEIGFKVKHMMFTNVSGKFNDFTSTIKNVDAAFETSEISFTAKVASIDTNNADRDTHLKSADFFETELYQDIVFTSTSIQKKTDNFYVVTGMLTIKGVTKEVAFNAEYSGVLVDPWGNTKIGLSLESKINRKEFGLTWNAGLETGGVLVGEDIKLFAEVQFAKA
>NZ_CP010817.1|WP_025125345.1|653420_654143_+|DUF3667-domain-containing-protein
MSCKTSHTDLSTGYCPDCGESIKLKRIDSHYVLHEISHVLHVEKGIFYTIKELLLKPGITVQKFITEDRSKLVKPIIFIIIASLVYSLIAHYFHIESFVSYHHSGGGGVADSIFLWGDTHSGYMNIIIGVFIAVWAKVLFKKHSFNLFEILILLCFVTGMSMLIFSVFAIIQGIVKVNLMAIAGVVGVLYCTWGIGQFFEVRSIKSYLKAFFAYVLGMLTFSVLVIIIGELLDYVILQSK
>NZ_CP010817.1|WP_041888977.1|654188_654749_-|DUF1543-domain-containing-protein
MTNKLFMTMLGVTPPGRHIEQHDIYFGIGTQMKDLIPQIVDFWPEAGPKLHVDAWREVTSVQGHHIEVVSRETHQPSDLKLFFINLGGYKPGIFDEFHQTCLVVANSQKEAIQYVKSTAFYEEYNLPPRGYSHVDNKYGLDVDDIYEMDEILNEDLKQQYTIKITPSIEPLTEDHIELGYMKLNSF
>NZ_CP010817.1|WP_041888980.1|654738_655887_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MFTQNQIVLSIGSNQGDKLSNIEKSIELINKHIGTVIKISPIYEFPAWGFESDPFFNCAVLLHSTLKAETVILKVLEIEQVLGRIRPQHTVGYSARLIDIDIISFNQEVYNTDNLSVPHPLMQDRQFVLQPCADLNLEWAHPILKQSFKELLNSCKDKTSFKIVGDIKSPILQYGFTHVNFIAIEGNIGAGKTTLTNRISEDFNAKNILEGFADNPFLPKFYKDATRYAFPLEMSFLADRYSQLSDDLAQFDLFKEFIIADYYIYKSIIFAQITLEEDEFKLYQQIFEIMYKETPKPDLYVYLYQNTDRLLENIQKRGRSYESEIPGTYLDQVNQGYFNYIKTMPADKVLIIDISDLDFVANQEDYIYILDKIQHKLVKHDE
>NZ_CP010817.1|WP_041888982.1|656013_657780_+|signal-peptide-peptidase-SppA
MRFLRNVLATIVGLFIFFGILFFGLMIIGVAMGSSSDTVTVKDSSVINLDLSGVKYDYAGKYNMKEFGFREAGKDGVSDVLAAIEYAKTDDRIKGISILNNNSMLGVVQKREIRNKLEEFKATGKFVLAYANVYSQGEYYLNSIADTIYINPVGGLDFKGLSTEILYLKGLQDKTGVQMEVMRHGKYKSAVEPFLQENMSEANREQTTVFLKSIWETLVNDISKSRKISVDSLNGIANNLGARTPKLALKTGLVDKVAYEDEYHAAIKHELGVEGDKDYNSVDILDYVKDVIVKNSAKTAKDRIAVIYAQGEIRDGEGSVSYIGEGSINRALKAARKDDKIKAIVLRVNSPGGSALTSELIWREIELTKKVKPVIVSMGDVAASGGYYISSNADRIFADPGTITGSIGVFGMVPNFKALATKYGVNAEQVKTHDNAANYSPFRDVDPGFRMMVTEGIEDVYTTFVQRVADGRKMTVEQVNELAQGRVWTGKDALENKLVDELGGLDTAIAYAAKKVEIDDYKVVNYPEYKMKFEDMLRGYLGASVFKSEEELIKEKIGEANYEMIERLNYFNNMRGVQAILPFEVKIE
>NZ_CP010817.1|WP_041888984.1|657915_660546_+|membrane-protein
MNKKVLKWTGGIVLGLFILLMLTPILFKGKIQDLVLKTINDNLNAKVTFEKVDLSFIRNFPKATVVIKDLAVVNKAPFDGDTLVSAKMIGLKMSIMELFNGADKPMSIEDILVENAKVNVIVNEQGVANYDIALKKEDEEDEDSSDKDPFSLALNHYKIDNLNLTYKDLGSKMMFTINEFYHQGTGNLSDDVLDLDTESKAKVSFVMEDTKFLNEVNLSLKALIGMDMTKQLYSFKENKALINQLPLAFDGSVQLLEDGQQFDLSFATPDSDFKNFLGLIPEAYAGNLKGVTTSGDFKVEGKVKGKMTETTIPTLAIHMNAKNASFKYPDLPKAVQNILLDVNVMNETGIMKDLYVDINQLSFKIDQDIFNAKAKIKNISENALVDANFDGIINLANVSKAYPVKLDTPLTGILKAKVATNFDMNSVEKEQYQNIKNSGSVSLTGFNFSTDAMAKPMQIQEAALTFNTSNVTLNKLAIKTGTSDLNADGRLDNLYGFLFKKQTLKGNFNLNSNNFVLADLLKEDTAKVEEKNEKSTTTKASDPLKIPGFLDCTINANAKTVAYDDLTLKNVKGTLVIKDEAARLQNMSTDLFGGKIAFGGNVSTKEAVPTFDMNLGLQSLDIKQTFNDLGFLKAVAPIANVMSGKVNAAVVMKGKLNAADLSPDLNTMSGDIKGDLANATITAQNSKLLSSLDGALNFIDLKNLDLSNKKMHIVFNNGRVQFKPFDIKTKDLAVTVSGEHGFDQSLNYALDFKVPAKLLGNDVANALTALGPKSSNKFDAIPVKVGVTGDFTNPKVSANMADVVKNITNEILEEQKNQLVGKGKDALLDILGGKKENNTSGEENTTKKNETEETVNKISEGLKGLFGKKKKTEETE
>NZ_CP010817.1|WP_041888987.1|660596_661394_-|DUF2797-domain-containing-protein
MQYEGVLNKMQTEFNTPIEYYLVFKSNFININQILDRNIKIEFTGYECLNCGQHKKIFRQGFCYECFYSSAQVGDWIMRPELSTAHLGIEDRDLEYETKVQIQPHIVYLAVASDVKVGVTRKTQVLTRWIDQGASKAIEIVEVPNRYLAGITEVALKDMFTDKTNWRKMLQNEVLETNLEEIRNSLKEKLPEEVRPYFDQTDSSIFNLDYPVIQFPTKIKSLNLDKTPSYEGKLKGVKGQYLLFEDGTVFNIRTYEGYMVNIEVI

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Crispr_ID: NZ_CP010817_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_4

732535-732672

Orphan

Consensus_repeat	Method
ATACAGATTATGAACAGTGGAGATAACACAAGTATAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010817_4

>merge|NZ_CP010817|4|732535-732672|CRISPRCasFinder
ATACAGATTATGAACAGTGGAGATAACACAAGTATAGAGGTTAGAATGCATGATTACAATATATAAATGCGTTTAAAGTCACCCAAACGATGTCACCTCATACAGATTATGAACAATGGAGATAACACAAGTATAGAG

>NZ_CP010817|4|4|732535-732672|CRISPRCasFinder
ATACAGATTATGAACAGTGGAGATAACACAAGTATAGAG	GTTAGAATGCATGATTACAATATATAAATGCGTTTAAAGTCACCCAAACGATGTCACCTC
ATACAGATTATGAACAATGGAGATAACACAAGTATAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041889099.1\|726897_729918_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP010817.1\|WP_006257217.1\|737589_738639_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP010817.1\|WP_006257219.1\|735894_736221_+\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212138
NZ_CP010817.1\|WP_041889114.1\|740203_741289_+\|agmatinase-family-protein	unknown	unknown	gnl\|CDD\|212539
NZ_CP010817.1\|WP_041889117.1\|741594_742929_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|223727
NZ_CP010817.1\|WP_006257233.1\|717128_718208_+\|bifunctional-3-deoxy-7-phosphoheptulonate-synthase/chorismate-mutase-type-II	unknown	unknown	gnl\|CDD\|273577
NZ_CP010817.1\|WP_041889111.1\|738793_740071_+\|kynureninase	unknown	unknown	gnl\|CDD\|130873
NZ_CP010817.1\|WP_041889101.1\|732822_733323_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041895143.1\|732118_732472_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041889091.1\|721504_724315_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP010817.1\|WP_006257220.1\|735688_735892_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041889094.1\|724314_725520_-\|DUF4929-family-protein	unknown	unknown	gnl\|CDD\|374470
NZ_CP010817.1\|WP_006257218.1\|736228_737455_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|223206
NZ_CP010817.1\|WP_041889085.1\|718354_719320_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234631
NZ_CP010817.1\|WP_041889106.1\|735236_735689_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|376833
NZ_CP010817.1\|WP_052472632.1\|731374_731908_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP010817.1\|WP_041889103.1\|733706_735038_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP010817.1\|WP_041889097.1\|725530_726898_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NZ_CP010817.1\|WP_041889088.1\|719451_721419_+\|DUF3857-domain-containing-protein	unknown	unknown	gnl\|CDD\|379003
NZ_CP010817.1\|WP_041888823.1\|730472_731351_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041889099.1\|726897_729918_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	9.45611e-138
NZ_CP010817.1\|WP_006257217.1\|737589_738639_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP010817.1\|WP_006257219.1\|735894_736221_+\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212138	cd11531, NTP-PPase_BsYpjD, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain putative pyrophosphatase YpjD from Bacillus subtilis and its bacterial homologs. This family includes a putative pyrophosphatase Ypjd from Bacillus subtilis (BsYpjD) and its homologs. Although its biological role has not been described in detail, BsYpjD shows significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, BsYpjD contains a single MazG-like domain.	1.40315e-37
NZ_CP010817.1\|WP_041889114.1\|740203_741289_+\|agmatinase-family-protein	gnl\|CDD\|212539	cd11593, Agmatinase-like_2, Agmatinase and related proteins. This family includes known and predicted bacterial and archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme that belongs to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. As compared to E. coli where two paths to putrescine exist, via decarboxylation of an amino acid, ornithine or arginine, a single path is found in Bacillus subtilis, where polyamine synthesis starts with agmatine; the speE and speB encode spermidine synthase and agmatinase, respectively. The level of agmatinase synthesis is very low, allowing strict control on the synthesis of putrescine and therefore, of all polyamines, consistent with polyamine levels in the cell. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.	1.0989e-96
NZ_CP010817.1\|WP_041889117.1\|741594_742929_+\|FAD-dependent-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	1.04941e-47
NZ_CP010817.1\|WP_006257233.1\|717128_718208_+\|bifunctional-3-deoxy-7-phosphoheptulonate-synthase/chorismate-mutase-type-II	gnl\|CDD\|273577	TIGR01361, DAHP_synth_Bsub, 3-deoxy-7-phosphoheptulonate synthase. This model describes one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterized member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. [Amino acid biosynthesis, Aromatic amino acid family].	4.2916e-52
NZ_CP010817.1\|WP_041889111.1\|738793_740071_+\|kynureninase	gnl\|CDD\|130873	TIGR01814, kynureninase, kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. [Energy metabolism, Amino acids and amines].	1.46085e-162
NZ_CP010817.1\|WP_041889091.1\|721504_724315_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.29216e-40
NZ_CP010817.1\|WP_006257218.1\|736228_737455_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|223206	COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism].	1.56251e-97
NZ_CP010817.1\|WP_041889094.1\|724314_725520_-\|DUF4929-family-protein	gnl\|CDD\|374470	pfam16283, DUF4929, Domain of unknown function (DUF4929). This family consists of uncharacterized proteins around 400 residues in length and is mainly found in various species, such as Bacteroides, Capnocytophaga and Prevotella. The function of this family is unknown.	3.63663e-73
NZ_CP010817.1\|WP_041888823.1\|730472_731351_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.74662e-39
NZ_CP010817.1\|WP_041889085.1\|718354_719320_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234631	PRK00098, PRK00098, GTPase RsgA; Reviewed.	1.07879e-165
NZ_CP010817.1\|WP_041889106.1\|735236_735689_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|376833	pfam02580, Tyr_Deacylase, D-Tyr-tRNA(Tyr) deacylase. This family comprises of several D-Tyr-tRNA(Tyr) deacylase proteins. Cell growth inhibition by several d-amino acids can be explained by an in vivo production of d-aminoacyl-tRNA molecules. Escherichia coli and yeast cells express an enzyme, d-Tyr-tRNA(Tyr) deacylase, capable of recycling such d-aminoacyl-tRNA molecules into free tRNA and d-amino acid. Accordingly, upon inactivation of the genes of the above deacylases, the toxicity of d-amino acids increases. Orthologues of the deacylase are found in many cells.	2.66293e-88
NZ_CP010817.1\|WP_041889103.1\|733706_735038_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	1.89883e-106
NZ_CP010817.1\|WP_041889097.1\|725530_726898_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	7.78883e-16
NZ_CP010817.1\|WP_041889088.1\|719451_721419_+\|DUF3857-domain-containing-protein	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	1.88351e-05
NZ_CP010817.1\|WP_052472632.1\|731374_731908_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	0.000629694

>NZ_CP010817.1|WP_041895143.1|732118_732472_+|hypothetical-protein
MGMISCSKHGLSGIISCIGQDLVDKIQLGEEVLSTSLCKIKVVMHIDIEDKLEFSYVLSLETRDRLRLADRYEISKDEDLTSLDCLYKSLGVICVRCFAEYRYKDAFKGFLIGAEVL
>NZ_CP010817.1|WP_052472632.1|731374_731908_-|transposase
MGREPKNKERYHLKFIEQIVQEIENGASQNSVIREYSLNKSTLNRWVKKYASPEYHATRKNKVYSESLKRQVVHSITEHHMTAQEACIMYGVESISTINNWLLVNYNKNIDICNEIVIPSLMEEKTSNTESLEIKALKKALSEAQFKIVALNTLIDVAEKSLDIDIRKKSGSKQLKK
>NZ_CP010817.1|WP_041888823.1|730472_731351_-|IS3-family-transposase
MKKICQLFGKTRSAYYQSIDRYASQSIKDEIILQEVLNIRATLPRVGTRKLQHMLQERLGSHNISVGRDYLFDLLDSHKMLVRQRKRKAYTTDSRAWRGQYLDLYNGVKVTRPEQFWVSDITYIRLNNTWGYLSLITDAYSHKIMGYSFSLDLTTNGCLQALKMALKNRIYTEKLIHHSDRGCQYCSSVYTKILIENNISISTTQGGEPRDNAIAERVNGIIKGEFDLNYSSLGYQKTIDKIKNSIEAYNQIRPHDSCDRLTPNQAHLKTGILTKRWKNYYKTNKQKQQPVQ
>NZ_CP010817.1|WP_041889099.1|726897_729918_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MLLTPLRTITTLVISLFCAIGVYAQEPVFTGKILDLETKKGLDTAIITVLASGDTFFSNEKGEFQIPELYHSSVIISHEGYENLEMKLKKGNQTIYLLPTTKQLDELIIRKSTNINDIDIRNSTGSVITVDMTQLSQRSELDMAKLLEGQVAGLTVTYSGELGKKPEIRLRGNSSFNYQGNANEPLFIMDGIVISTETFMTLNPNDFSTIKVLKDAPATALYGIKAANGVIELTSKRGFDGKPIISYAMKQGITMRGERTANMMNTDEKLAFERRMQNPATPGYLYSSEYINTTYQNSPLLSQKLQEGEHKLDSLRRINTDWFKELVKPNYFQSHNLSVRGGTEKNSYFYSLNYSKQGGRIPGNDINQITARANLDYILAPNLTLSLNNSFGLSTTNTENGMDNDPTSLAFMLNPYETKHSTKLTSYSDRSYADLINQYKQKQTSKRFSSSMVMQWDILPELNIAGVIGADYSLSETYKRILSTAYSQKQKPNNAKGFISDSDSKNFDFTYNLRANYQKQLGDHDIFLGVNMDYYTTNTKIIGGEGHGIDDEISSLSGINNSLTGGYAPKNSGSKIKNTQLGFGAALGYTYKGTYDVYGSFKRDGSSLLPSSKRWNDAWSTGIGWSPIHYDFFKNQNILTDLKFKASLGYTASMTGISIRDIESTFSNPNTFYGDYRLLVLQGIPNKDLKPQQTHSINYSVDFGFFERLSLLVNFYQNTTKDAILSMPIAMSNGFNTFTKNIGELENRGIEFMLSGDAIRLKDFRWNTSLSLSYNANKVKSLYGTDRIYLTEESVIPEYEVGKPLGIIYGLETNGIHPLTGVPEYIDNDGHVIDLNQPKNANHFRRIGYSIAPYNGFFNNYFTYRNWALNININYNFGGKKMYNQSYVRDYKSSNLNAIEGQLQDSWFEVGDEDKVYPIKKLPSNAEEYYQSFANNRTIYKTDFIKLNYIQLSYNLGNNNFINKYFKSLQLSVQADNIYTYRFQTDRGSLNDVLQPILTFSLNATF
>NZ_CP010817.1|WP_041889097.1|725530_726898_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MIKKIFYLFVFSSLWGCSLENKSENEISGNDIINSPIKAYGVLSQAYKATPIQPKDYTLYTEDLQPSYLINYLKGSSLAYKWDETTLSINSSLIWNNHYDAIVHLNVLLESDHNFNSQDPVWQYIKGSALVLKAYNYFDLLQLYSERYNPTALGIIAKDKLIVEEKARLTQEESLKLIKTYLSEGLDLIKQSGKHQNYFIKEKGINILQARVAMYEKEYAKAESIAQELVNDGAKLPTSTEDYRNIWTSDNTNIYWLYNNLDNPNHYLYYEDNQGDLLYINEDYNFDLDDIRYAVSQYKHSMKATAEDKIERSLLGKYKRSQLDKDPRDVVMIRSTEAYFILAESLLEQNKLAQAKEVLNTFLSAINQPNIEDTPSQQELRHKLHFEKQKEFIGEKNNLFDLKRWNTPIERKKEDSNTIIIKIEPNDYRWTWPIPMNELRYNSNAQQNKGWPSFK
>NZ_CP010817.1|WP_041889094.1|724314_725520_-|DUF4929-family-protein
MKTSFKHIVKSFTILLLTTLSLSSCSKDDGVTKEYLGENKVHLSTQNTVLKNNGEDEISIEVLLVKKTHQTITLTFGLEDNQEQGKDILELKSQTITFAPGEKKAVLTLKSKTARTITEAKRIKLNLVENNTTIPLEKPLVFTVLPLSVIDELTKEQITLLDGYKEKGLDLYPLLGEIDVTTEVNYPGGGVQEVFNLPYTTILTGKTIITLSELATTDKPVLKMTSNAMGLEAYFYKMFRDLTIDDLEFWNNPGPDAPPQNKEVMKSVGLTRTSTESFEVTLNHIAIDINTKEVSFISTLKNLYNDEYLAVPFEFKYSAWDRLKKLLDAGDLMATENYEMGGSLNPIDHINVDQIIEDDYDNYTWKESKAKLTDSKFTFEFIFIHNNADGYIQVKTEYKLK
>NZ_CP010817.1|WP_041889091.1|721504_724315_-|insulinase-family-protein
MKRTQILYFFALVLCPLLVVGQGTFSPLPKAEKAIYGTLDNGLNYIIHPIPQQKTEYRLVLNVGSLQERNDEKGFAHFLEHMIFNGSDDFPGRQAIDTLQRLGYQFGRDINAYTTYERTVYDLSLLDIKQQDLAINILANFLGKSHLHDEGIEKERRIVIQEIKDFGTEPLFNRKKLEGTPHLDRLPIATEKEILNLDPVKLKAFYKRWYNPALATIIIVGNVNTKDAVEQIKKYFGSFKGQLNLDRKQSENTFSPVYTNLLEKQSNATINSNKLEIVRFTEAPFLASKEDYRQQLIEQIYKQWINKKLSISKSTATAHSLWYLPNKNENAIEIQAKTVEELQNRISLVASTVNTMSVKGIHKKELEHYKQHLLNHSVPSEDEDIAYITNAYVDQVVVNSHYLSSIARHALLTELLPTITTKDIESKHSNTWSTDQENLYLLTYNDSLFSIDSADELNKYWNEGSTKTLVFKSAKQKKTHERPRGSFHWRTMPPIQKATTDIAVKEQLYADINLTELTLANGLRIGIKPTKATDDNYIMTLFTRNGLNQIPTSEQKYYQDAGYFIDSSWIHGFTNDGYMQAGSDREISTLVSINKDASIINTSSRKGNSKDLFEWTYRKLYDYITPQQDFKEYIEESISSIDTTSKPSALLDNPAIKIGHQIEEYKKGGSLFSEELTTIEGWKKVNLDSFFTLYNQSFANLEEVYVLIAGNFDTDDIKKKAIAYFGALNNAPKQGDKNKANSSKVFAKEEITRAMLTSSDIERPDVTIVFNGTIKPTLKESMMAHIVREMFNNQFLTLSREKEGLVYSPYSALDVEVYPEPRTSVSLFFSTSLTDIDKLENLAKEVIHSLQTKSISKTELEQMKLTILNNKRLHLTDTSTFQWVEKLRETLLNFGSLEDFNNYDEILNSITPDDIKEISKSIFNTSTYGVFILTPQ
>NZ_CP010817.1|WP_041889088.1|719451_721419_+|DUF3857-domain-containing-protein
MNKIACFLFVIICCLQTPSYGQDFLGKVKPAELAELSNTSFAKDKAVILQEEVRVDFEYSDEYGFRVNETVSRKIKLYDEVAKEKLKFVVPYAPKGYAREDMTINVSNIYRLVDGKVVKQKSPKLNLIDEDKGNWREKGVSYNDAKAGDIIEYSYIKSTNYIDELPEWYIQSDMPKESTSYTVVVPEYFLYSIVKKGDIKLTEQEYNRRVSFRGVNGFMIKSEINAIEKTYKAQLVPSFIVEPYLDNPANYISTVRFDLQQVQFPGNSAEKVMQTEKEFYADLLKNRGFGKELKQDKFLKKEINLEDYKGLSTEAQISKLLNIVQSRVTWNQEYGLYAQNGIKTTFYKGTGNSADVNLLLTAMLRYVGIKANPVLLSTRSNGVKTAWQRNYYNHIITAIEADNSIYLVDATNKYTTLNILSLDDLNGTGTILYDTGAILKVNLMPQFISSKEVKYQITPNSNGSISGQIIENYKNYRALEFRNMYDGSEWRFGKWYESQYVGMNVSSTRVYNGDNNEKDVRAVFSFSKQNGVLFFNDKYIINPFQFYPLYSNPFQNEYRNNPIYIGYPELDNYLMGIVIPEGYKVSTLPQNFTLKSEQTGLEVQTKFEVKDNQVLCSLIFIKAKGVIASKDYDSVRDVYIQLLEQLKTQVTLEKK
>NZ_CP010817.1|WP_041889085.1|718354_719320_+|ribosome-small-subunit-dependent-GTPase-A
MNGIVYKSTGSWYSVKGEDGVFYDCRIKGKFRIKGIKSTNPIAVGDHVRFELETTNDVTTGVINDIKPRKNYVVRKSVNLSKQVHILASNIDTLFLIVTINNPVTTTSFIDRFLVTAEAYGIKTVLVFNKIDTYSEDALDEQLYMQYIYSQIGYECLRVSAVTGKGIDAIKERMRGKVSTFTGHSGVGKSTLINAIEPGLHLKTAQISEQHQQGQHTTTFAEMFDLSFDAKIIDTPGVRGFGVVDMEPQEVGDYFPEFFALKDQCKFNNCLHREEPYCAVKDALDRDELAWSRYKTYIQILDGEEEHYRTDIYKDGKNQDE
>NZ_CP010817.1|WP_006257233.1|717128_718208_+|bifunctional-3-deoxy-7-phosphoheptulonate-synthase/chorismate-mutase-type-II
MEKLNINKDWLSLFQGQNPAIIAGPCSAETPEQVMRIAKSLPKEVKVYRAGIWKPRTRPGGFEGVGAIGLKWLQQVKAETGMLLATEVATAEHVQLCLEHDIDILWIGARTAVNPFAVQEIADVLRGTDKVVLLKNPVNPDLSLWMGGVERLAEAGITKLGVIHRGFSTYEKTKYRNIPEWQIPIDLKLHLPNIPIFCDPSHITGNRDKILGVSQQALDLNYEGLMIETHCDPDNAWSDAAQQVTPDQLGDIISKLQVRNVTDETEEFLQQIQAHRIQIDDMDSKLLDLLRKRMAISDAIGTLKKEKNVAVFQQDRWLKILEKMQEEGKHIGFTEEFITAIYTAIHQESIHRQDKIINK
>NZ_CP010817.1|WP_041889101.1|732822_733323_-|hypothetical-protein
MRTEICSCEGLDPFCDKCFGTGHAPLSTSKKTVTKQSSKVKPIKKIKSYLPEKIDSLTKIEIDALAIKIISTLDLKSKKQMQILNSIPFSTSTFRRDYKEKFIDLENIETEKQQLRNDLFILDQEIVSKNYRSHFTFRHFLSDKDVDVTSNRELKGLIREYKKLKK
>NZ_CP010817.1|WP_041889103.1|733706_735038_-|amidohydrolase-family-protein
MKLKSIIALFVVSTSITFAQTKQVLIENVRILDHKTAALTAPMNVLVSDQKIEKISPSSISVKGKDVTKINGNGKTLMPGLIDVHVHMVFGALTMEQMMSPNATPESLMQNVAVGAHSMLMRGFTSVRDAGGPIFPLKAAIDADKTAGPRIWPSGATISQTAGHGDFRTPNERSRRFFGKPSRAEEMGATFIADGRDEVLTATRENLRFGASQIKVMAGGGTSSAYDPIDVTQYTFDEIKAAVDAAEDWGTYVMVHAYTPRAVQRAIEAGVKSIEHGQMLDEETLKIMAEKKIWLSLQNLMDNNDNMDAQRKEKRKPVLEGQDKVWPLAKQLGVKLAWGTDFLFEPELNKEQNDYILRLQKWFTNAEILKMVTQDNGELLQLSGLRSPYPGKLGVVEENAYADLLLVDGDPLKDLSLIANPEKNFILIMKGGKIYKNTINTKK
>NZ_CP010817.1|WP_041889106.1|735236_735689_+|D-tyrosyl-tRNA(Tyr)-deacylase
MKVVIQRVTKASVTVEGSVVGNIGQGLLVLVGVEDIDTELDIEWLSGKIVNLRIFEDENGVMNKSVKEVDGEVLLVSQFTLHASTKKGNRPSYIKASKPDFAIPMYEKFIDKLENDLGKRIQTGKFGADMKVELLNDGPVTIVIDSQNKE
>NZ_CP010817.1|WP_006257220.1|735688_735892_+|hypothetical-protein
MNSLVKFSLFTVIYVMMTWFLTDEVGCAFSGDEQCLISFVVKYIIFIALMFVYDKWVKGRIFKTKNK
>NZ_CP010817.1|WP_006257219.1|735894_736221_+|nucleotide-pyrophosphohydrolase
MNIQDAQLAVDNWIKEHGVRYFNELTNMAQLTEEVGEVARIIARRYGEQSEKESDKNKDLGEELADVVFVVMCLANQTGVNLQEAFDKKMDLKTKRDHDRHHNNEKLK
>NZ_CP010817.1|WP_006257218.1|736228_737455_+|3-phosphoshikimate-1-carboxyvinyltransferase
MNIKLLKSKVEHDKTLVISGSKSESNRLLILQELFPSLTIGNVSDSDDVCAMQGALASTGDVVDIHHAGTTMRFLTAYYSLCSTRELTLTGSSRMQERPIGVLVEALRQLGADITYSKKEGYPPLHIKGQIAIGGKVELPADVSSQYITALLLVGTRLKNGIELHLVGNITSRPYIEMTLQLLSQLGVESSFNGNIISVKPLVKASTEQFTVESDWSSASYFYSFVALSPIGTTMQLKSYKEDSLQGDSQVSQLYTILGVETTYLEDYTIKLEKVRETDFEFKADLIETPDLAQTIAVTCFGLGIRCEMTGLHTLKIKETDRLVALQNELTKLGGVVDITEESIVVHPSKGMREGIEIETYQDHRMAMAFAPLSLKGEVTILEAEVVTKSFINYWDCLAEIGVNIVKK
>NZ_CP010817.1|WP_006257217.1|737589_738639_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MKLSNFNFDLPEELLAEFPAENRDEARLMVVDRKTGTIEHKLFKDLIDYFDEGDVMVLNNTKVFPARLYGNKEKTGARIEVFLLRELNAEQRLWDVLVDPARKIRIGNKLYFGDDDSLVAEVIDNTTSRGRTLRFLYDGSYEEFRFKLQELGETPIPKYINREVVPEDAERYQTIYATEEGAVAAPTAGLHFSKHLLKRLEIKGVEFANVTLHIGLGTFNPVEVEDLSKHKMDSEEMFVNQEACDIVNAAKERKNRVCAIGTTSMRALESSVSSSQTLNPFVGWTNKFIFPPYDFSIADCMVTNFHMPKSTLLMMISAFCGHDLMMKAYKEAVEEKYKFYSYGDAMLIL
>NZ_CP010817.1|WP_041889111.1|738793_740071_+|kynureninase
MTFENTLAYAKSLDEKDPLAKYRDEFNFPEVNGKQVIYFTGNSLGLQPKRAVEYVNEVMNDWGALAVEGHFYAEKPWWDYHERLSEPLSRIAGAKSSEITVMNTLTVNLHILMTTFYRPTASKYKIICEEKAFPSDQYLIQSQVRLHGLEPKEAIIELKKRPGEHNFRLEDILEKIDEVGEEVALVLIGGLNYYTGQVFDIKTITAHAHQYGAKVGWDLAHAAGNIELKLHEWNVDFAAWCSYKYMNAGPGSASGCFIHERYHTDKDLIRLAGWWGHNKERRFLMEKKFDAVESAHGWQISNPSILSLAPYLASIEMFDEVGMEALITKQREITAYLEFVMEDVAKAVNANYELITPKKEIERGSQLSVFLHGKGKDLFSYLMNEGVIVDWREPNVVRLAPVPFYTSYEDIYRFGEILKKADSLF
>NZ_CP010817.1|WP_041889114.1|740203_741289_+|agmatinase-family-protein
MSTKQNKIDNFDPSQPGLADATIYGLPFTAEESEIIVVPAPWEVTVSYGAGASEGPEAILEASYQVDLLHQQYPDLWKLGIYIDEAPEHWATDSAKYKEMAQPIIEALENGENIADLPELQKDLDTINAVCDKFHKEVEEKVSYWMTKGKRVVLLGGDHSTPFGYYNALAKHHDAFGILHFDAHMDLRDAYEGFTYSHASIMFNTLKLPQVKTIVQVGIRDFCEQEVATVVEADGRVLVHTDADLKKDEFEGMSWKDKCDQIIASLPEKVAISFDIDALLAWYCPNTGTPVPGGLTYEQATYMITRLSESNKLIIGMDLVEVAPGEDDWDGNVGARLLFHMCGAFAKSQGLAVGQKIEFKK
>NZ_CP010817.1|WP_041889117.1|741594_742929_+|FAD-dependent-monooxygenase
MVKDVSIVGSGLVGVVLAISLKKKGYTVTVYDKSEDIRNIDFRGRSINLALSDRGWRILKELGIEDEVRELGIPMSERAIHTEDGNVKYQPYSIKGDSIWAISRGGLNKDLISIAEREGVLFKFDTPIWDVNLKEGILYTAEKESDQWNEIKTDLIFGADGAYSRVRSKMQKQSRFEYQQSYLHLGYKELRIEAMPNGEHQLSKNAFHIWPRKDFMFIALANVDGSFTCTLFMPYEGEVSFNTVQTDEEIRKFFSFYFKDVDALIPNYLEQFRENPVNSLVTMKCFPWVSEDKVALIGDAAHAVVPFYGQGLNAGLEDVYVLNQIINQVGSGSWFDVLKKYQEERKPNGDAIAELSYRNFREMSEDTADDMFLLRKKIEAKFAAKYPSLWLPLYDRVTFSTESYVSALAEGDRQAGIMDEVMKMDEIIHKWDSEEVMNKIKSLL

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Crispr_ID: NZ_CP010817_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_5

1038225-1038332

Orphan

Consensus_repeat	Method
ATAAAGTAGAGACGCAATATTTTGCGTGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010817_5

>merge|NZ_CP010817|5|1038225-1038332|CRISPRCasFinder
ATAAAGTAGAGACGCAATATTTTGCGTGTCACAGTTAATGTTTACAGAACATGTCACAGGTTACAAATCACCCCAACATAAAGTAGAGACGCAATATCTTGCGTGTCA

>NZ_CP010817|5|5|1038225-1038332|CRISPRCasFinder
ATAAAGTAGAGACGCAATATTTTGCGTGTCA	CAGTTAATGTTTACAGAACATGTCACAGGTTACAAATCACCCCAAC
ATAAAGTAGAGACGCAATATCTTGCGTGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_082027842.1\|1038427_1039645_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|182528
NZ_CP010817.1\|WP_041889741.1\|1046830_1048063_-\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|377281
NZ_CP010817.1\|WP_041889716.1\|1032499_1033285_+\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
NZ_CP010817.1\|WP_041889734.1\|1042893_1044417_+\|catalase	unknown	unknown	gnl\|CDD\|163710
NZ_CP010817.1\|WP_006256938.1\|1041763_1042570_+\|DUF4261-domain-containing-protein	unknown	unknown	gnl\|CDD\|379456
NZ_CP010817.1\|WP_041889722.1\|1036707_1037403_+\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|182971
NZ_CP010817.1\|WP_041889738.1\|1045748_1046507_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041889700.1\|1026771_1027482_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	unknown
NZ_CP010817.1\|WP_041889728.1\|1039855_1041226_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP010817.1\|WP_041889706.1\|1028119_1029538_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240544
NZ_CP010817.1\|WP_041889719.1\|1036047_1036530_-\|membrane-protein	unknown	unknown	gnl\|CDD\|105206
NZ_CP010817.1\|WP_041889710.1\|1030822_1031671_+\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
NZ_CP010817.1\|WP_041889708.1\|1029936_1030785_+\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
NZ_CP010817.1\|WP_041889736.1\|1045251_1045752_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041895173.1\|1033311_1035969_+\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NZ_CP010817.1\|WP_041889713.1\|1031688_1032495_+\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
NZ_CP010817.1\|WP_041889703.1\|1027614_1028082_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP010817.1\|WP_041889730.1\|1041283_1041685_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041895175.1\|1044629_1045130_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP010817.1\|WP_041889744.1\|1048102_1049794_-\|RNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_082027842.1\|1038427_1039645_-\|FtsX-like-permease-family-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	6.19958e-38
NZ_CP010817.1\|WP_041889741.1\|1046830_1048063_-\|DUF445-domain-containing-protein	gnl\|CDD\|377281	pfam04286, DUF445, Protein of unknown function (DUF445). Predicted to be a membrane protein.	2.83443e-91
NZ_CP010817.1\|WP_041889716.1\|1032499_1033285_+\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	7.86163e-30
NZ_CP010817.1\|WP_041889734.1\|1042893_1044417_+\|catalase	gnl\|CDD\|163710	cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.	0
NZ_CP010817.1\|WP_006256938.1\|1041763_1042570_+\|DUF4261-domain-containing-protein	gnl\|CDD\|379456	pfam14080, DUF4261, Domain of unknown function (DUF4261). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 80 amino acids in length.	2.00231e-15
NZ_CP010817.1\|WP_041889722.1\|1036707_1037403_+\|pseudouridylate-synthase	gnl\|CDD\|182971	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.	8.89335e-93
NZ_CP010817.1\|WP_041889728.1\|1039855_1041226_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	5.50415e-141
NZ_CP010817.1\|WP_041889706.1\|1028119_1029538_-\|MATE-family-efflux-transporter	gnl\|CDD\|240544	cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	0
NZ_CP010817.1\|WP_041889719.1\|1036047_1036530_-\|membrane-protein	gnl\|CDD\|105206	PRK11383, PRK11383, YiaB family inner membrane protein.	1.3991e-41
NZ_CP010817.1\|WP_041889710.1\|1030822_1031671_+\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	1.04551e-31
NZ_CP010817.1\|WP_041889708.1\|1029936_1030785_+\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	4.95604e-26
NZ_CP010817.1\|WP_041895173.1\|1033311_1035969_+\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.00708684
NZ_CP010817.1\|WP_041889713.1\|1031688_1032495_+\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	2.80575e-26
NZ_CP010817.1\|WP_041889703.1\|1027614_1028082_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	3.00608e-67
NZ_CP010817.1\|WP_041895175.1\|1044629_1045130_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	7.6573e-25
NZ_CP010817.1\|WP_041889744.1\|1048102_1049794_-\|RNA-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.40843e-67

>NZ_CP010817.1|WP_041889722.1|1036707_1037403_+|pseudouridylate-synthase
MLEILYQDEYIVAINKPRDLLVHKSFIASDIQEYAIQILRDQIGQYVYPVHRLDRKTSGVLLFALDKEILKQLNDDFATRSVEKKYIAIVRGYTIDEETIDYALTNDNGQVQKAKTYYKTLQRVEIEMPFGKHLTSRYSLVEAYPETGRQHQLRKHFKHIFHPILGSRPHGCNKQNKLWLDTHGLGAMLLHALELKFTHPVTKETIELRATIDEQYRKYNAVLGFDLEQYY
>NZ_CP010817.1|WP_041889719.1|1036047_1036530_-|membrane-protein
MIEEEKTETRNTTSSSTTNRAHLQNDTINLERFKPSAIYTLVAWIALGLGITSYCIGLWNAEILLSEKGFYFTLILFGLFAVVALQKSVRDKIEGVPVTPIFYTLGWIGTLASITLLTIGLINAEMTLSEKGFYAISYLLSLFAAVSVQKNVRDLENFSK
>NZ_CP010817.1|WP_041895173.1|1033311_1035969_+|carboxypeptidase-regulatory-like-domain-containing-protein
MKYVIYILFFMIVLPLQAQVVLKGKVNGENKQALSNVIVSILNPETNAVIAYEMTDSKGTYQIPIKSSLTTLKIKASIVNYSVFEKVIENKSQDIQIQLVDEFTQLEEIFVKASPITQHNDTLVFDLSKFAGKNDRVLEDVIKKMPGMEVSSDGEIKYQGKALNKFYVEGKDLMQGRYGAITKALPNLHVSKLEVIENHQPIKMLEGKVPSESPAINIRLKNKISLSGSAKIGVGGDPFLWNSTISPMFFSKGLQYLVSYDTNNTGEDLSNKFRAFGSFGSFDVYNYTKSTGQALSMSTTSAPGIAKSRYLDNKSHYVSANFLVKFKDKIEMNTNAFYNNDEVKQSGAQSTEIRNLDANGNVSDVIRYSRKDENRYFKEAFNSKFTITKNTKDNYLKDYITINVSRNKERGLLLQNNDPINQSVLSPSFTLQNSLSTLVPVGSNKFANFKSIIDFTRDKQDYDVVANGNVNFPDQDLKKYDLLNQSFLDNTFYTQNALSLSWKYRKWTFTEEYSLLYENKRFETDLYGYNTQSVWLGDNYQNDLTYNRFVNRLNSSVNFKGVSWDMTFTVPIIWSSMKLDDKSIDAKTTKNAVDFSPSLYLSYKINNMWTLRGGSTLSTSYTPLDQLYSHYIFSGLNFTAYKAKIEDTQSIFSWFRFEFKNPFNGIFFNGSLNNNYQEKKIILSQTIDENGQSVLEALDQKNIANNQSANINLGKFFSEYSSNIKGSFSVNKGKSEILVNQSLRDVNTYNYNYGLQLTNNYFDWLNFTYDFNYMETERKDMKQSTHSYGNSHNLRIDLIPFKSHSFVWKLDYKENVFNNQKFTNRFMDVMYRFKWEKKKIDFDFEWNNILNTKEYEQVVINSIQTSTTNFKLRPSQFLVSVRFNF
>NZ_CP010817.1|WP_041889716.1|1032499_1033285_+|GLPGLI-family-protein
MKYLIGCVVLFLLSIHSMAQEKKDFMRYEYSLTFKPYDVKVMPDSLPITEKFYLDIDGSNSMFYDEFTYQEFVADLEKVEIDIPNSQVPWMVAKDSGSIILYEMINSLEAYKVKQPLNLIQWTISSEIEEYHGMKVQKATGELSGRNWTVWFTTEIPIIEGPYKFKNLPGFVVKAEDKNKDYVFEFTESMRVHNYWVELKELDFFKEVTGKQLNRLKTLNANKTYMQLIQEIGGKLMNDDKEPSDFMTKKFGKEPNPIELY
>NZ_CP010817.1|WP_041889713.1|1031688_1032495_+|GLPGLI-family-protein
MKKYLFSITVTVLVALGTLAQEKIEVMRYEYEATFKPSVKSDEIFTESVFLDVWDTSSRFYSKGYASRVERLAKKENSGLIGKSISMADEQTRFEAVLVKEANKLFYVQNVSGTMLKIESPVNQVKWNIDDTVEEFEGMQVQKAIGELNGRIWTVWFTSEIPIIEGPYKFKNLPGFVVKAQDDKEDYVFEFRKSEKVEIPIDFNEYKQAGLYKTSELVKLREVKANMTVKQNLDSQGMIVYFEDTVENQQMLNKKVGNSSNYLEWLKK
>NZ_CP010817.1|WP_041889710.1|1030822_1031671_+|GLPGLI-family-protein
MNKLLVISIVAFITSISGLAQEKIEVMRYEYQMTMPSAKTADDVNASNNATEIVYLDVQNSESRFASEGNIKREETLIEYTTGAKKTADHTARFQALGQFRSKVNWIIYKDQANLNTYENSGIETYNVEEPSNLIKWNISGDIEDYNGMKVQKAVGELSGRTWTVWFTQDIPLIDGPYKFKNLPGFVVKAEDSTGDYKFEFLKSEKVTAEFWLMDRHKNAMKVNKKQWDKIRNVNANKSVSQMMSEIGAGTIVKVVDEKGNDITNDKLKKKTGKEVKPIEFY
>NZ_CP010817.1|WP_041889708.1|1029936_1030785_+|GLPGLI-family-protein
MIKAIYVSVTALCSVMLANAQEKIEVMRYEYQLTLPTTSATGDEEALQSSTEIIYLDIKGSESRCASEGNIGREETLMEFSTGAKKDADFAVRMQALSQFKSRVKWTVYKNGTSLNTHASSGIESYNVEEANNLVKWSISSDVEDYNGMKVQKAVGELSGRTWTVWFTQDIPLIDGPYKFKNLPGFVVKAEDSTGDYKFEFLKSERVTTDFWLSNKQEKAMKIDKKQWDKIRNVNANKSFSQIMNERGGTATFKMVDEKGKDITDEMTKKKMGKESKPIEFY
>NZ_CP010817.1|WP_041889706.1|1028119_1029538_-|MATE-family-efflux-transporter
MSTTTFKSKNNIFSLIKQSFSNENFDLTNMSINKAVFLLAIPMMFEMLMESVFALVDLYFVGHLKESAYAIQSVGLTESLLSIIYAICIGISMAATAIVARRIGEKDKEKAAQNAAQAITLSILITIVLSVLGFIYAKDWLLWMGASEASAEYGYGYTRILLVSCVSIMLLFLINGIFRGAGNAAIAMKSLGFGNIINIILCPIMVRGWWIFPEMGLEGAAYSTAIGRSMGVVYQLYYLSKKDSLIQLKLKYFKIQWDMTWNIIKIAVPGMVQYMISTCSWVILARIVAQSGGEIGSSGFLTCLRLLVFFILPAWGLSNAASTLVGQNLGDNNPDRAYKSVIATLKYNVFYMAIVTIIFFSMAEILASFFTTDEAIKAVAKEAMYIGAIGFIAYGAGMTLMNAFNGAGDTVTPTIINIVGFWLFQIPFAYLMTYHFNFGSTGAFIAIPSAELVIAILAFILFRRGKWKKKKV
>NZ_CP010817.1|WP_041889703.1|1027614_1028082_+|GNAT-family-N-acetyltransferase
MNSIHWHTKAFDELTVSELYDIMRLRTDVFVVEQNCPYPELDGKDKKCLHIYATKLDQVVACARIVPPGLSYPEIAIGRVAVHADYRKDGYGRILMQHAIDKIEEEFGAQDIQIGAQCYLKRFYSSFGFVASSEEYLEDGIPHVDMIRKASEYTK
>NZ_CP010817.1|WP_041889700.1|1026771_1027482_+|CPBP-family-intramembrane-metalloprotease
MSISVIISDFIHYIRQPHTEVLDISKKEKVRRSLLLVVFTLIVITVYIFSINKIVPLPKTARLFDFIADKGLLVAVLFIVLLGPLAEEAAFRLALRFKSWYLLLSTPLTLVYSLWILYRINLSIAFIVGGVFYVILCTYLYLHRNNIVILKERHEKYFGYVFYSYTFLFMIMHISNFYTINTEVLVYSPLLFLPQFIGGLLLGYIRMRFGFGYNCMIHIIYNTIPMLLLYVTGVIK
>NZ_CP010817.1|WP_082027842.1|1038427_1039645_-|FtsX-like-permease-family-protein
MRIALTSIKSQILRTCITVFIIAIGIWALVGILAVVSALRNTILDDFASMGANTFTILRYDVADRMAKNKSVQKVNPVITYNEAQAFKREFLFPFTNVSLSFNAASNIEVKNDFMKTDPEIPIIGCDENYLSNSGLTVTEGRNFSYTDIANDHFVCVIGSDFSKKMFKDQNPISQIISIRGYKFRIIGMLKEQGSTFGQNEDQRIFIPIKIARSIFNTAHGNYDIKIGLLQDNLLNQAIDQATIDFRNIRKLTPAQPSNFGIERSDDLIRSMMKQVNMLNVAAWVIGLITILGSSIALMNIMLVSVTERTREIGVRKSLGAKKKTIAIQFFTETIIIGQLGGLLGTLLGILTAYALAQVMSFSFTVPWTAIIAAFTTTFIVAIISGLYPAMKAAKLDPVEALRYE
>NZ_CP010817.1|WP_041889728.1|1039855_1041226_+|histidine--tRNA-ligase
MAKKPGIPKGTRDFSPTEVARRQYIMQTIRHGFEKFGFHPIETPSFENLDTLLGKYGEEGDRLIFKILNSGDYLSKVDETVLESKNSLKLTSQISEKALRYDLTVPFARYVVMHQNELDFPFKRYQMQPVWRADRPQKGRYREFYQCDADVIGSKSLWQEVEFVTLYDRVFTALGVNGVTIKLNNRKILAGIAEVIDASDKLIDFTVALDKLDKIGEEGVRKEMNEKGITTEAIDKVKALFNFTGTFEEKLAKLRVMLASSEEGLKGVEELAFVGREVALIGLQTAKLNLDVTLARGLNYYTGAIFEIGAPETVQLGSIGGGGRYDDLTGIFGLKDMSGVGISFGLDRIYLVMEELNLFPETVSASSKVMFLNMGEEEMSYGVQAVMKLRDAGIRTEVYPDKAKVGKQFQFADKKGIPYAVLVGSQEMADQKYTLKELTSGEQEVLSLEELIAKLK
>NZ_CP010817.1|WP_041889730.1|1041283_1041685_+|hypothetical-protein
MPMKKKLRTLRVNNSEYLYSIGVTYIADTEESIFIMRIFVDKYSKYALLVHFRVLDDYYVGNPLNHSVLLYNTALEKEIVVNLNRPLFIRLALDYGLEQGWKPTQERLELDGLALLVQHGYQIDKLLKKTYSK
>NZ_CP010817.1|WP_006256938.1|1041763_1042570_+|DUF4261-domain-containing-protein
MGSKKLGNNPKMMMFRLLFEQKPSIDLQAVLEELKQVFPNVTFAKEANVFTFPDCEVEFEEGIVPAQCVVMHAEDDSVKKIDQKYTEQNWHWEEGAEVLKNCQYEVLVTDFLSRSLEPRIRIVLMQQMLFAMAKVAQPTIIVSEHGEKLIDPEVFMRDCLDPNYVALDLMINVRLYNVNQPEYGSLLMDTVGLHALGISDFQFFFDDDTIVNEVAGRLWDYAYYLMEAGDVIEDGNTIEGFEPGSKWTCHKEFSSSQPRRTVINVVMS
>NZ_CP010817.1|WP_041889734.1|1042893_1044417_+|catalase
MLKRSFLISALVVSSFIQAQVLTTNTGNPVGSNQHSKTIGNNGQVLLEDIHLIEKLAAFDRERIPERVVHARGAGAFGEFVASADFSDVTMADFLSQAGKTTPVMVRFSTVTHQQGSPETYRDPRGFAVKFYTEQGNYDLVGNNLPVFFIRDAIKFPDMVHAFKPSPLTNGASDPNRVFDFFSNLPESTHMFTWLFSDYGIPANFRQMEGNGVHAYKWMNDKGEVTYVKYKWVPRQEIKNLTQEEANAIQATSVEHATLDLYHAIDRGDYPIWDLYVQMLKREDFDALDFNPVDVTKIWPAEIAKSVKVGTMTLKANPTNYFQQVEQAAFAPSTLVPGIEPSEDKLLQGRLFSYADTQRHRLTGNFQQIPVNAPKNTATTYNQNGYMSTHVQSGDVNYQPSTNKPEVVDNAKFMYSKSEFFKPVSTTQHVIDKENNFKQAGDLYRSFSKKDQDNLIKNLSGAFKTIKNKVIVHKMIAYFYQADKEYGTRLLKAVDMKLDEIKPYLVQ
>NZ_CP010817.1|WP_041895175.1|1044629_1045130_+|ankyrin-repeat-domain-containing-protein
MIVGLLLCSVHISFGQDIFTAARENNTEEVKQLISQKIDLNQVNDRSFTPLTIAVYNDSKEVVKVLLEAGVDLEKQDAMGNTALIGAVFKKNLTLVNWLLESGADVNRRNSNEASPLIFAVTFGTTDIVGALLKAGADKTVKDNRGKTALDHAVLQDNKEMISLLQ
>NZ_CP010817.1|WP_041889736.1|1045251_1045752_+|hypothetical-protein
MEVSSVDFQSFIDNYSSSDSEWLALDWNGKYGAKFKDDNYLFRIQIAELVCQQLDTVDLPLLRELFIHIGTASKLNFSVYNKFHLLAQTLLERGGKEYLFDYLCAAHISFDTFLSTANIELSQERIEELLVHFDYLKETESDLEVQKLLSEHMRDRLEGLKKKIKI
>NZ_CP010817.1|WP_041889738.1|1045748_1046507_+|hypothetical-protein
MKRILAVLFLMMGLSGYSQESNLSDASVERIKSLITLFENEDREGIAKRIVYPLKREYPLPPVTSEFEFVSRFEEFFVPEFSAKIANSVIEEYSHMGWRGIMFDLGRMWLTESGDIYRIIDQTELEKKIREEMIQADKKRLHRSVNKFLEPYAIIKTGQDIWRIDRKDEKVMRLTIWNDGKLVSDIPDLILEGTEDIQGTMGNRVLYFKDKKANDMITILMDNPESEVAHEVTIVKTDSEGNEVSLKGQSDN
>NZ_CP010817.1|WP_041889741.1|1046830_1048063_-|DUF445-domain-containing-protein
MNEKKKQLQKHKRIATGLFILMAILYISMVYAIRHSPASWMGYVKAFSEAAMVGALADWFAVTALFRHPMGMPIPHTNLIVNSKNKIGDNLGDFVTDNFLTSDNIRPYVEKVDLANMISTWLNKPNNQIILEHEITSLAKRILAELEDETIIALMTSKAKEGIAAINIQSFVSQGVTYAIEKNEHNRLLDIILPKAQLYVEEHRQEIYDNVVEKKPILGLIGGKAVTNQLISGINTFLSDIEKDPNHKIRKEITLRLEMLAVDIEASPMWKAKFDEIIGQFITDDTIHTYMQDLWHSTKENLLVQLEDNNSVLRKYISNSLSKIALDLENNEENKIKINKWIQHTIYKVALKNTKEVGQLIRNTVDSWDGRELSDKLELEVGKDLQYIRINGTLVGGLVGLLIYIITSLL
>NZ_CP010817.1|WP_041889744.1|1048102_1049794_-|RNA-pseudouridine-synthase
MSQPKAIFRKFTSDLQSIALPTKFTFPFYYEPHPLTVLAAEELQHELSTHPLIAPLFDTEDENCLPTGKMFGVLVVKNEKGELGYLAGFSGKLGSHTDLEGYVPLIFDLWNENGFFAREDVEVKAINAINAKIEKLEADTIYSNAKALLKQQIAEEKTAIEEKKAQHKKQKNERKAIRKEQEVILSPEEFQLLNDDLVKQSLRDKYELRVLTEYWLEQITTTRDITTSIEEELNNLKEERKQKSNGLQQKLFASYKFLNYKGEEQSLLEIFEKTVLQQPPAAAGDCAAPKLMQYAYEHNYTPIALGEFWWGESPKSEIRKHQHFYPSCRSKCEPILGHMLEGLEVDDNPLLINPALNRPIEVVYEDEYFAIVNKPEDFLSVPGIYILDSVYERMKLRYPNATGPLIVHRLDMPTSGILIIAKDKDSHKALQSQFIKKSLEKRYVAILDGIIEEDEGIIELPLRIDFDDRPRQMVCYEYGKYAKTRYEVIERKDGKTKVYFYPITGRTHQLRMHASHPKGLNTPIVGDDLYGAKADRLYLHAESITFRHPKTYELMTFTIKESF

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Crispr_ID: NZ_CP010817_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_6

1734777-1734850

Unclear

Consensus_repeat	Method
GATCTTCTCTCTCCACCTCTGAATCC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP010817_6

>merge|NZ_CP010817|6|1734777-1734850|CRISPRCasFinder
GATCTTCTCTCTCCACCTCTGAATCCTCCTTCAGATGATCTATTAGATGATCTTCTTTCACCACCTCTAAATCC

>NZ_CP010817|6|6|1734777-1734850|CRISPRCasFinder
GATCTTCTCTCTCCACCTCTGAATCC	TCCTTCAGATGATCTATTAGAT
GATCTTCTTTCACCACCTCTAAATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_006261055.1\|1730309_1730804_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041891037.1\|1730831_1731374_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041891046.1\|1733820_1734576_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP010817.1\|WP_006265177.1\|1732093_1732438_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227155
NZ_CP010817.1\|WP_016649511.1\|1737221_1737623_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP010817.1\|WP_041891030.1\|1727998_1729447_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041891044.1\|1732455_1733706_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_CP010817.1\|WP_041891048.1\|1737010_1737196_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP010817.1\|WP_041891065.1\|1743449_1743869_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NZ_CP010817.1\|WP_041891055.1\|1738297_1740400_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP010817.1\|WP_041891058.1\|1740553_1740961_-\|DUF4377-domain-containing-protein	unknown	unknown	gnl\|CDD\|379548
NZ_CP010817.1\|WP_041891071.1\|1745573_1746566_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP010817.1\|WP_041895279.1\|1726573_1727839_+\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|188463
NZ_CP010817.1\|WP_041891060.1\|1741801_1742176_-\|DUF4258-domain-containing-protein	unknown	unknown	gnl\|CDD\|379454
NZ_CP010817.1\|WP_006259064.1\|1731437_1732091_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223477
NZ_CP010817.1\|WP_082027822.1\|1729509_1730295_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|179371
NZ_CP010817.1\|WP_041891063.1\|1742239_1743436_-\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NZ_CP010817.1\|WP_041891068.1\|1743871_1745428_-\|PglZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|333815
NZ_CP010817.1\|WP_036497081.1\|1726045_1726444_+\|DUF3995-domain-containing-protein	unknown	unknown	gnl\|CDD\|372505
NZ_CP010817.1\|WP_041891052.1\|1737707_1738283_-\|non-canonical-purine-NTP-diphosphatase	unknown	unknown	gnl\|CDD\|237823

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041891048.1\|1737010_1737196_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	4.36188e-16
NZ_CP010817.1\|WP_041891046.1\|1733820_1734576_-\|hypothetical-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	4.06066e-07
NZ_CP010817.1\|WP_006265177.1\|1732093_1732438_-\|hypothetical-protein	gnl\|CDD\|227155	COG4818, COG4818, Predicted membrane protein [Function unknown].	0.00212721
NZ_CP010817.1\|WP_041891044.1\|1732455_1733706_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	3.45633e-132
NZ_CP010817.1\|WP_041891065.1\|1743449_1743869_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	5.51274e-50
NZ_CP010817.1\|WP_041891055.1\|1738297_1740400_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP010817.1\|WP_041895279.1\|1726573_1727839_+\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|188463	TIGR03948, hypothetical_protein_FAEPRAM212_02812, butyryl-CoA:acetate CoA-transferase. This enzyme represents one of at least two mechanisms for reclaiming CoA from butyryl-CoA at the end of butyrate biosynthesis (an important process performed by some colonic bacteria), namely transfer of CoA to acetate. An alternate mechanism transfers the butyrate onto inorganic phosphate, after which butyrate kinase transfers the phosphate onto ADP, creating ATP. [Energy metabolism, Fermentation].	4.88175e-103
NZ_CP010817.1\|WP_041891058.1\|1740553_1740961_-\|DUF4377-domain-containing-protein	gnl\|CDD\|379548	pfam14302, DUF4377, Domain of unknown function (DUF4377). This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	3.99419e-35
NZ_CP010817.1\|WP_041891071.1\|1745573_1746566_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	6.69011e-28
NZ_CP010817.1\|WP_016649511.1\|1737221_1737623_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	0.00054367
NZ_CP010817.1\|WP_041891060.1\|1741801_1742176_-\|DUF4258-domain-containing-protein	gnl\|CDD\|379454	pfam14076, DUF4258, Domain of unknown function (DUF4258). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 95 and 124 amino acids in length.	3.32428e-05
NZ_CP010817.1\|WP_006259064.1\|1731437_1732091_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	9.30321e-34
NZ_CP010817.1\|WP_082027822.1\|1729509_1730295_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|179371	PRK02113, PRK02113, MBL fold metallo-hydrolase.	3.41902e-93
NZ_CP010817.1\|WP_041891063.1\|1742239_1743436_-\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	2.24585e-167
NZ_CP010817.1\|WP_041891068.1\|1743871_1745428_-\|PglZ-domain-containing-protein	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	6.0746e-28
NZ_CP010817.1\|WP_036497081.1\|1726045_1726444_+\|DUF3995-domain-containing-protein	gnl\|CDD\|372505	pfam13160, DUF3995, Protein of unknown function (DUF3995). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 138 and 149 amino acids in length. There are two completely conserved residues (W and P) that may be functionally important.	2.68389e-20
NZ_CP010817.1\|WP_041891052.1\|1737707_1738283_-\|non-canonical-purine-NTP-diphosphatase	gnl\|CDD\|237823	PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase; Provisional.	1.57735e-108

>NZ_CP010817.1|WP_041891046.1|1733820_1734576_-|hypothetical-protein
MRNFTVFLFIILSVLTVAAQDRTSVKGTILNDKSFLPVDDVNVINISQVKGTISKRDGSFTVEANLNDSIHLSYPGYIPIKLKVTNDWLNNENLKIYFTENTIELDEILIKKFDLTGYLEVDTKLIELNEKMQFDFYRQNKTPYYGTAMGTFFSPVDAVYNLFKGKDKKLKKIEAIKEDQNMIALMQTRYDREIVCGLLEITREDIVKSLQNCNYTDKFIYTATDFQIYQALNDCYDNSKLLASKKKNTSN
>NZ_CP010817.1|WP_041891044.1|1732455_1733706_-|dihydroorotase
MNIILKAAKVIDPTSPFHNQTVDIQVENGLITKIANQIENDQFEQIKYDNLHVSQGWFDSSVCLGEPGFEERENIAHGLEVAAKSGFTQIAVEPNTHPITDSQSIVSFIKQKALGQTTEVFPIGALTVKSEGTDLAELFDMKNAGAIAFGDYKKPIQNANVLKIALQYVQDFDGLIIAFSQDNSIKGKGVANEGVESTKLGLKGIPTLAEELQIARNLFLLEYTGGKVHFPTISTARSVELIKEAKQKGLNVTCSTAVHLLTMTDEKLADFDTRFKVYPPLRDEATRQALINGVLDGTIDCITSEHNPLDIEHKKLEFNSASNGTIGLESAFAALNTVLPLEVIVDKLTSARTIFKIDTPSIKEGNKVNITLFNPSKEYSFTKENILSKSKNSAFLNHPMNGEVYGVVNGDKKTLK
>NZ_CP010817.1|WP_006265177.1|1732093_1732438_-|hypothetical-protein
MLKTFNEKEIKTGKTMAIVSHITIIGCLIAIFMNLEPKNRFAGFYIKQSFGIWLFFYALAYTAGRFDSWMISGPFYFCFFLLWVYSFAGAINSEIKPLPKIGVYFQKWFDKLSA
>NZ_CP010817.1|WP_006259064.1|1731437_1732091_-|alpha/beta-fold-hydrolase
MDTSLSISYLIQEPKVIKDKNPVIILLHGYGSNEEDLFSFAPELPDDYYVISARAPYTVPPYGYAWYAITFDADANKFSDDNQAIESRDLIVRFIDELVAKYPIDANNVNLVGFSQGAILSYAIALSYPEKVNKVVALSGYFNENIIAKNYKENNLSKLRLFASHGTVDQVIPIDWARRTPTILTSLAVKHTYKEYPVGHGVHPLNFRDFKEFLLEE
>NZ_CP010817.1|WP_041891037.1|1730831_1731374_+|hypothetical-protein
MKKSISLFVILLLTMTSCDFILKDNKDDNAKGMVVTDGSTEIVTLDEDDEVLGCAYSAGYRWSELENNCIRIFEIGFRLNPIGLEEDTTEDNALEDNSVSCFVTYAKDKKKAEIFLPNHKKGIVLDLTKDKSAYINDGWELSNEGMVLKHRGETAFTAAKTIELKIINSDQPIEEDVHEE
>NZ_CP010817.1|WP_006261055.1|1730309_1730804_+|hypothetical-protein
MKHKAFFYLFLFSLVILVLLYANNKNMYKMEGKKIEIAHKRIDIVRDSLKEVTKDFNEANYFSIEYNEDAQEYFNYKTIDQSLTSIKEEVLALNHQDNGNPLVPYGVINGEKCVINKVKVLNHRWIIADFYAGAVHGEVLIKYFYTEGKPTEFKTIDTVMYATK
>NZ_CP010817.1|WP_082027822.1|1729509_1730295_+|MBL-fold-metallo-hydrolase
MWKIYVILEVYFLGTGTSQGIPIIGIDHPVAHSIDSRDKRLRTSVLVKWDEHTILIDCGPDFRQQMLTAGCSKLDAIFFTHEHADHIAGLDEIRPLTILHGSLPIYAQERVIKALERRYDYIFTKEDRYPGAPSVEEHSITSQDTITIGEKTIIPIDVMHGPLPILGYRLGDLVYITDAKYITDEEVEKIKGCKVLIVNALRIKDHPTHFSLEESLAFIDKIKPEKAYLTHIAQDLGFHKDVENILPKDVYLAYDNLKITI
>NZ_CP010817.1|WP_041891030.1|1727998_1729447_-|hypothetical-protein
MKNFAEDLVLNGDRVIEHHPAISDKALKINLNNDIYGTFAEIGAGQETVRHFFRAGGSSRTVAKAMSAYDKVFSDAIYSVEEDGRYVTESRLIKMLDYETRKIEERLIREENPNKTFFSYANTVATIDYAKKNKGHGWVGIMFQTASNQAYNKIVLHIQFKETDSKLQQETLGILGVNLIYGAFYQHHDAKKLIHSLYDHLDKDQIEIDSINFSGPIFETVDNRLMSLQLVKNGMTDAVMFSPSGRSELAANILYKQNILALRGSFRPVTIVNMDMYQKSLDKFMTQNNLAKENTKVVFEITLSNLLAEGSLDEIDFLDRADLLCSLGQTVMISNFQEYYKLTEYFSKYTDQKIALAMGVSSLLNIFEEKYYTHLTGGILEGLGKLFRNTMKIYLYPMIGNEEQIVDSTNLKVDLHIKELYKFFKKNNQIIDIEDYEKDHLSIFSRDVLKLLQQNQNGWEEKLPEGISKIIQEKELFGYKRK
>NZ_CP010817.1|WP_041895279.1|1726573_1727839_+|acetyl-CoA-hydrolase/transferase-family-protein
MKYVSASEAAKVVKSGDRIYVHAAAATPNILTKAISDRAEELRNVEFCHIHTEGAAPYADPALSESFHVNSFFIGKNVRHTIAAGNGSYTPVFLSEVPNLFRKGALKVDVVLIQVSPPDEHGFCSLGTSVEATVAAMECAKVVIAQVNKYMPRTFGDSVLHISKIDMAVEHHTAIYAQKQAVITDTEALIGDHVAALIEDESTLQMGIGSIPNAVLSRLTNHKNLGLHTEMFSDGVIDLIESGVIDCSKKTIAKGRALATFLIGSERLYKFVDNNPFIVMKESNYVNDTAIIRQNPKVVAINSALEVDVTGQICADSLGVHMYSGVGGQMDFVRGASLSKGGKAIIALSSTSNKGHNRIVPFLKQGAGVVTTRAHAQYIVTEYGVADLYGKTLKQRVDAMVEIAHPNFREEILKTYHDSIK
>NZ_CP010817.1|WP_036497081.1|1726045_1726444_+|DUF3995-domain-containing-protein
MSLEVMIKIVNTLIFSFLSAVHIYWALGGTWGVVGVLPTKDGERKLNPSPIGTLVVASGLAVFAGISLGDVSAYKWVYLVMGILFGLRAIGDFNYVGVFKKVKNSVFAKKDTTIFIPLCFYLSLSNIFLYMS
>NZ_CP010817.1|WP_041891048.1|1737010_1737196_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MKVSEMLKILVKDGWYLLREGSNHSLYVHPIKSGRVILPRHPSAELKKGTEQSILKQAGLK
>NZ_CP010817.1|WP_016649511.1|1737221_1737623_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MRIKVILERSKTGYSAYSEELQGAVTVGDTFDEVKANFKEVLSMEIDYLKELGNNERALELSLAEVVYYLDLNTFFDSYELFNKTKLATYLGINPSLLRRLSVEPVELSDKKAKQIQDGLHKLADELKEYHFV
>NZ_CP010817.1|WP_041891052.1|1737707_1738283_-|non-canonical-purine-NTP-diphosphatase
MKLVFASNNKNKIKEIKNQLPDTIEILSLEDIGCNIDIPETADTIEGNAKLKADFVKRHYGYDCFADDSGLEVDALNGAPGVYSARYAGEQKNDNDNIDKLLEVLQKEENRKANFKTVICLNLHTETYYFTGIIDGQLLKERQGTEGFGYDPIFVADGMDKSFAEIDINAKNAISHRGRAVRQLVDFLLKR
>NZ_CP010817.1|WP_041891055.1|1738297_1740400_-|ATP-dependent-DNA-helicase-RecG
MSKNLLDTPIEYLKGVGPQRADLFKRELGIFTYRDLLHLYPNRYIDRTQYYKINELYNNNSEVQIVGKIIHIKTVEQKRGKRLVATFTDGTGQIELVWFQGYKWIQENLKLNTPYVAFGKLNSFNNTFSMPHPELDLLEEHQKNIANAMQAVYPSTEKFGARISNKSIIKMMMQLVKETHPLFMDTLSDEFKRKLSLISMQEALINIHFPKNMDMLNKAQFRLKFEELFYVQLQLLIKNIARKDKIKGYPFEKVGDYFNTFYSEHLPFPLTGAQKRVLKEIRNDVGAPAQMNRLLQGDVGSGKTIVAFMSCLLALDNGFQACIVAPTEILATQHYVGIKELGEPLGLKIKLLTGSTKTAERRVLHEELASGELHILIGTHALFEDKVIFKNLGLAIIDEQHRFGVEQRSKLWHKNELPPHVLVMTATPIPRTLAMSLYGDLDISVIDELPPGRKPIQTNHYFEGKRLAVWHFLKTEIAKGRQVYIVYPLIDESETLDYKNLMEGYEAISRDFPLPEYSVSIVHGQMTPAEKDREMDRFIKGETNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSYCILMTGDKLSNDSKIRMETMCRTNDGFEISEVDLKLRGPGDIMGTQQSGTLPLKIADIVKDQEIMLYARHHAVQLLKEDPTLEEPENQRIKNKLNILNSKTTIWNYIS
>NZ_CP010817.1|WP_041891058.1|1740553_1740961_-|DUF4377-domain-containing-protein
MKKILLLAAVVGLSFTSCKKDGESGTTVPAVEPTEQTATPTESTEATPKEELGNVTYTIASKLVDCTGVAPMKCMQYKEEGSDEWLNMYGGIEGFNYEEGYEYVIEIKREKVENPPADASSIKYILVKEISKTKK
>NZ_CP010817.1|WP_041891060.1|1741801_1742176_-|DUF4258-domain-containing-protein
MKFTQRLAYYLFGLLIGGMFLFYFFGEKKTEFCYLPNCRVLKDLRSKPVTYSKAVEAKFKEGWVSNDDIRKSLQYGDVNFSESNIDFEKGKLYVIVGRNEQNENILIKVINYTDKIVLYDIEKM
>NZ_CP010817.1|WP_041891063.1|1742239_1743436_-|alanine-dehydrogenase
MATLTPFSMKDLIPQEECLMVERKRSELFIGVPKENTLIEKRICITPEAVQTLSTYGHRVLIEKGAGEAASYSDLDYSKAGAELTSDTKKIFGCLVIVKVAPPTLEEVKLMAPYTVVWSTIQLKTLTRQYFETISKKKISAIGFDFIHDENGTYPAVSALSEIAGTASILIASELMTTTNNGKGLLFGNIAGVVPTEVVILGAGLVAENAARTALGMGANVKVFDNSIQKLRRLQNNLSQRISTSTIQEKILHKALMRCDVAIGAIRGKNRAPIVVSESMVDNMKKGAVIIDVSIDTGGCFETSELTTHDHPTRIRSGVIHYGVPNITSRYSRTASMALSNIITPLLLEYTDSGDLEGTVNCDSVIKSGIYSYKGLVTNRNVAEWFNLDYKDIHLFTF
>NZ_CP010817.1|WP_041891065.1|1743449_1743869_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MTEIVFSLNQIQEAAKEILNKLKHRIVLFDAQMGAGKTTLIKEISKQLGVEDMTSSPTFSIVNEYHSTLSKDRVYHFDLYRLNSEEEAYDMGMDEYLDSNHWCFIEWPEKTPHIIPEEHATIEISILENGDRKVILNNN
>NZ_CP010817.1|WP_041891068.1|1743871_1745428_-|PglZ-domain-containing-protein
MNKIHILWVDDEVELLKPHILFLEKKDYIVTTCTNGQDAIDLFKENQYDIVFLDENMPGLSGLETLNEIKTIKNNTPIIMITKSEEEYIMEEAIGAKISDYLIKPVNPNQILLSLKKNLDDSRLISEKSSLSYQKEFRNISMDLMQARDYEDWISIYRKLLYWEQKLENIEDQNLFNILDSQKTEANSLFGKFVEKNYESWINDPEDSPVFSHQIFRKWVAPELKKEDSKLLFIVIDNLRYDQWRAFEAIVTNHYKVESENSFFSILPTATQYARNAIFSGLTPLEMSEQLPQYWKNDTDEGGKNLFENEFLQHQLQRLRLNIKNEYHKITNLKEGRKLADNFKALKDNKLITIVYNFVDMLSHAKTEMEVIKELASNDKAYRSLTVSWFRNSPLFEIIQQAQTLGYKLIITTDHGTINCKNPSKVIGDKNTSLNLRYKTGKSLTFEAKDVYHVKDPKKVQLPNINVSSSFIFAKNDFFLAYQNNFNYYAAYFRNTYQHGGISLEEMIVPFIVLNPKV
>NZ_CP010817.1|WP_041891071.1|1745573_1746566_+|glycosyltransferase-family-2-protein
MYFSFIIPVYNRPEEVDELLDSLTKQTYKDAFEVVIIEDGSKEDSREVVSKYEDSLDVSYYYKANSGPGSSRNYGMERAKGEYFIVLDSDCIIPPNYLTIVDQYLREEYVDCFGGPDAALDSFSDVQKAINFSMTSVLTTGGIRGASERIGKFQPRSFNMGISKRAFLASGGYGKVHPGEDPDLTIRLWNLGFDTQLFSKAYVYHKRRIDWQKFYIQVNKFGKARPILNQRYPETAKITYWFPSLFMAGLLLSLLMTYYTFGFILCYIIYFILVFISCFIKEKSFKISLLSIVAIFIQFYGYGKGFLKANYILFIKKQKAEHGLPEMFFK

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Crispr_ID: NZ_CP010817_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_7

2006910-2007024

Orphan

Consensus_repeat	Method
GTAATATTATCTAATAACACGAAGTCGGGAGACTTCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010817_7

>merge|NZ_CP010817|7|2006910-2007024|CRISPRCasFinder
GTAATATTATCTAATAACACGAAGTCGGGAGACTTCGCGCAGCGGTGACAGAGCCTTGTGCAGGACTGTATATAAGGTAATATTGTCTAATAACACGAAGTCGGGAGACTTCGCG

>NZ_CP010817|7|7|2006910-2007024|CRISPRCasFinder
GTAATATTATCTAATAACACGAAGTCGGGAGACTTCGCG	CAGCGGTGACAGAGCCTTGTGCAGGACTGTATATAAG
GTAATATTGTCTAATAACACGAAGTCGGGAGACTTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041891680.1\|2003283_2004564_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP010817.1\|WP_041891664.1\|1995998_1996364_-\|DUF2200-domain-containing-protein	unknown	unknown	gnl\|CDD\|337575
NZ_CP010817.1\|WP_041891692.1\|2008410_2009583_-\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|376577
NZ_CP010817.1\|WP_041891698.1\|2011573_2013358_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041891674.1\|1999058_2002145_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_CP010817.1\|WP_041891687.1\|2006132_2006795_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP010817.1\|WP_041895312.1\|2007702_2008311_+\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
NZ_CP010817.1\|WP_041891667.1\|1996357_1996726_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372824
NZ_CP010817.1\|WP_041891683.1\|2005367_2006006_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|311152
NZ_CP010817.1\|WP_041891704.1\|2014956_2015283_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP010817.1\|WP_041891701.1\|2014046_2014322_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212523
NZ_CP010817.1\|WP_041891677.1\|2002164_2003265_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
NZ_CP010817.1\|WP_006258805.1\|2015272_2015503_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041891670.1\|1996893_1998060_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP010817.1\|WP_074761198.1\|2014321_2014942_+\|arginase-family-protein	unknown	unknown	gnl\|CDD\|212523
NZ_CP010817.1\|WP_052472683.1\|1995283_1995886_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP010817.1\|WP_041891689.1\|2007080_2007671_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041891707.1\|2015867_2016935_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|341474
NZ_CP010817.1\|WP_041891695.1\|2009955_2010984_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP010817.1\|WP_041891672.1\|1998157_1998991_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041891680.1\|2003283_2004564_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.30318e-25
NZ_CP010817.1\|WP_041891664.1\|1995998_1996364_-\|DUF2200-domain-containing-protein	gnl\|CDD\|337575	pfam09966, DUF2200, Uncharacterized protein conserved in bacteria (DUF2200). This domain, found in various hypothetical bacterial proteins, has no known function.	2.64932e-75
NZ_CP010817.1\|WP_041891692.1\|2008410_2009583_-\|proline-dehydrogenase	gnl\|CDD\|376577	pfam01619, Pro_dh, Proline dehydrogenase.	2.57685e-98
NZ_CP010817.1\|WP_041891704.1\|2014956_2015283_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	0.000170473
NZ_CP010817.1\|WP_041891674.1\|1999058_2002145_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_CP010817.1\|WP_041891687.1\|2006132_2006795_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	3.58611e-132
NZ_CP010817.1\|WP_041895312.1\|2007702_2008311_+\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	9.13532e-21
NZ_CP010817.1\|WP_041891667.1\|1996357_1996726_-\|hypothetical-protein	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	9.33433e-05
NZ_CP010817.1\|WP_041891683.1\|2005367_2006006_+\|hypothetical-protein	gnl\|CDD\|311152	pfam07022, Phage_CI_repr, Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.	2.53074e-11
NZ_CP010817.1\|WP_041891701.1\|2014046_2014322_+\|hypothetical-protein	gnl\|CDD\|212523	cd09999, Arginase-like_1, Arginase-like amidino hydrolase family. This family includes arginase, also known as arginase-like amidino hydrolase family, as well as arginase-like proteins and are found in bacteria, archaea and eykaryotes, but does not include metazoan arginases. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid.	2.98567e-10
NZ_CP010817.1\|WP_041891677.1\|2002164_2003265_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	2.61099e-45
NZ_CP010817.1\|WP_041891670.1\|1996893_1998060_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.79647e-61
NZ_CP010817.1\|WP_074761198.1\|2014321_2014942_+\|arginase-family-protein	gnl\|CDD\|212523	cd09999, Arginase-like_1, Arginase-like amidino hydrolase family. This family includes arginase, also known as arginase-like amidino hydrolase family, as well as arginase-like proteins and are found in bacteria, archaea and eykaryotes, but does not include metazoan arginases. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid.	7.16598e-59
NZ_CP010817.1\|WP_052472683.1\|1995283_1995886_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.08916e-33
NZ_CP010817.1\|WP_041891707.1\|2015867_2016935_+\|3-dehydroquinate-synthase	gnl\|CDD\|341474	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol condensation. The binding of substrates and ligands induces domain conformational changes. In some fungi and protozoa, this domain is fused with the other four domains in shikimate pathway and forms a penta-domain AROM protein, which catalyzes steps 2-6 in the shikimate pathway.	1.26985e-148
NZ_CP010817.1\|WP_041891695.1\|2009955_2010984_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	7.77005e-19
NZ_CP010817.1\|WP_041891672.1\|1998157_1998991_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.84976e-20

>NZ_CP010817.1|WP_041891687.1|2006132_2006795_+|uracil-DNA-glycosylase
MKLKAKGWNKHLAAEMTSPYFKTLIENIDCLYETTMVYPPKEEVYTAFELVDFEDVKVVIIGQDPYHGAFQANGLSFSVSKGVKLPPSLQNIYKELEDDLGIRNINGDLTKWAEQGVFLLNATLTVEEKKAGSHQKLGWEKFTDAVIEQLSKHRENIVFILWGSYAQKKGKNIDRSKHFVIETVHPSPLSVYRGFYGSKPFSQTNAYLESKGIKSIDWKI
>NZ_CP010817.1|WP_041891683.1|2005367_2006006_+|hypothetical-protein
MQNATGVIKKLKRMLGIKTDLQLADILDVKPNTISSWKKRDSLQYEGLIALCKEHKIDLNELFFSDSTAVYNSSYHKRKVKMISIDHHFEYFLDPEKTLATAPSYVFPTVEEVDTAFQVSVDNMYPTIKMTSYVITKRIQIEELQLWHVYLFVLKGKGIVIYRFKRMVDDNTLLLISDNPTFENIQVKIDDVKELFCIRGAFLPQMKGISEI
>NZ_CP010817.1|WP_041891680.1|2003283_2004564_-|TolC-family-protein
MFKNTLLTILSAFVLSTYAQDNSVKALKLSKEEAEALFLEQNLELIAKNLEISQAEAQLLQAKLWPNPTFEVSEINFWKTTDIEEQPKLIGNWGEAQQYAFRVEQLIQTGGKRRKTIDLQKLTIEEKQQEFESIIRELKLELRGNLSDLQILQEQQKIYEKQIESTKSLISAYKNQLDQGNISQAQYIRLKAAELQFKKELVNINKELEEAVKDFKNFINIGSNTLVVITDKLVAPEKEISELELENWIITAQEQRPDALKSRTLEKQSEKRLEIEKAQRVPDITLGVDYDRGGNIMRDFVGFGISFDLPIFDRNKGGIKEAKIDIELAKLDTQSKLNEIANDIVEAFRNYYHAEQLYKDIDSEYEQQLDQLLDAYLKNFQKRNVSLIEYLDFVEAYIENKTILLETKKDLNDHFEKLQYAVGQDL
>NZ_CP010817.1|WP_041891677.1|2002164_2003265_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MTKYSILTLALLNMVLMSCNKGEQNNEEITKEQECLSEAMKSTLNMEKVTLRPIERSLTLNGYIDYNQDKTVPYNSLVDGLVTNTYFSLGDYVTKGQLLAEIKSTDTNEIYSELKASEAELKVAKRELESVESMYKDGIASQKELIEAQEDVRTLNSKVVAVRSSLAIFNSRGESGVVNVVAPQSGYIVTKSVSTGMTVNAGDEPLFTIADLSDVWIMANVYAANMRNVQPNQEVKVSTLAYPDEYFAGKVTKVSQVFDAEERVLKARISMENKEMKLKPGMSADIIIQLETNEGKSLAIPNTAIIFDNNQNYVVVYKNDCEQEVRKITPVSKNNIYTYVADGVKENEMVVTTNELLIYEQLTNKL
>NZ_CP010817.1|WP_041891674.1|1999058_2002145_-|efflux-RND-transporter-permease-subunit
MQKFVKNIVSFSLKNTFIVIFGVLLLLFGGIYSYIHTPIEAFPDVTNTRARIITQWPGRSAEEVEKFITLPISKEVNTIPNKAEVRSISLFGLSVVTVLFNDEVDDFFAQQYASNRMGNVNLPEGADFEIEPPSGATGEIFRYIIKSDLPIKEVTAIQDWVIERELLSVPGVADVVSFGGEEKIFEIQINPTELINYDLSPLDVYEAVEKSNINVGGDVIQRGDQAYVVRGVGLLDNVEDIENILIEVKGSTPILVKHVANVVVSAKPRLGQVAFQDDDDVVQGIVVMLRGENPSAVIEGLKDKIADLNERILPKNVQIETVVDRTNLVNTTVHTVSKNLVEGVILVSIIVFIFLYNWRTTFIVASVIPLAFLFAIIMLKIQGLPANLISMGALDFGLLLEGTLVIVEHVFVGLEKRAEQVGMARFNRMSKLGTIKKSASSVASYIFFALLILIVALMPIFSFQKVEGKMFSPLAFTLGYALLGSLILSLTYVPAMCKILLTKDIKERENVISRFFKNNIYKMFNWSFTHKKLTLSMFIGLLVICGVRFHYYGSEFLPKLNEGALYIRATLPSSINLDESVRLAKEMKAKIREFDEVKFVLTQTGRPNDGTDPTGFFNIEFHTELKPESEWTRKITKDKLLEEIRLKLENYPGVNFGFSQPIQDNVEEYVAGVKSSLVIKIFGDDLFELEKYANQVAKSIKDVEGVTDLNVFKNIGQPELRIKLHDHKMAKYAVTTADAQAVIAMTIGGQAATTLYENERMFDVVLRFNKEYRDSDDKIGDILIPSLDGKQVPLKEIATIDYHTGPAFIYREGGSRYIGIGFSIEGRDLGSTIAEARAKVDKEVKLPAINKMEWAGEFESKERAANQLMLVVPVSLILILVLLYFNFGNVKDTAIAALTIPFAFIGGFVSLWATGTIFGISAGIGFIILFGVATIDGIVLIGVMRENLQHRMPLKEAIKEGVKSRIRPVVMIALMGSMGLLPAALSNGMGSEIQKPLAIMIVGGLIICMILSFTILPQVFYWAYRNKK
>NZ_CP010817.1|WP_041891672.1|1998157_1998991_+|AraC-family-transcriptional-regulator
MKLVQFEPLFLRHFRTEEWPFTYHNHNHYELMLISEGSGIHDLNKEQSTYQGNTIFFLSPEDSHHFYIEEKTRFRVIKFLPSAVKDGVNASITDYWDNLLINLGRRWEVSKGNGIEIELINKIISIIDLMIIEWEVNNKQVSELHTNLLRSVLLLMDKYTADNTHIIDQYDTSKIERIQNYIHANIHAPEKLVLKRLSDYFGLSESGFRNYFSTNMGMSLTQYTNGLKIEMIKKRIKHSDHNLSAIALEFGFTDASHFTKYFVKHTALTPLQFKREK
>NZ_CP010817.1|WP_041891670.1|1996893_1998060_-|MFS-transporter
MSIKNKEKYAIPIMAFTAGTIVANVYYSQPILKNIAETLGEPEAAVGKVSMLAQIGYGIGMFFLLPLGDKINRKRLIIAISIVQIFVLMCIANTTHLNFLLILSFLAGVCSTPAQIILPMAALLNKENRGKSVGIVFSGILCGILGSRLVSGWLTDLWGWQSVFTFSGIMIFISIILMWQFLPNAPIKFKGSYIQLLQSTFRLVKEHKTLRQAALLGSLTFGIFCSFWTTLTFHLSGAPFNYTPSMIGMFAIVAIGGALVAPYFGKLADKGQVFQNLFLTISLIIISLVGMLIFPNSILILIIAIFLLDIGVQATQITNFTRIYALSEEAHSRLNTVYMTAYFIGAGIGTFFGLISWSINGWLGSLTQMLLWSFLALGIVFLSKKGKL
>NZ_CP010817.1|WP_041891667.1|1996357_1996726_-|hypothetical-protein
MGIFDIFKRKPPAVEPTDTCDYTQICSHKEAERHFNKGHLDKLHLIGLAFGGDDSPFNILYVSPEAALQKREIDNYIVDLLQQGSKVQYKAFPEYKGNSFIPSKVIIEVDDDQTFTKEIEIW
>NZ_CP010817.1|WP_041891664.1|1995998_1996364_-|DUF2200-domain-containing-protein
MVNKDMENHKIYSTSFASVYPHYIAKAEKKGRTKEEVDTIIEWLTGYDQCSLVQIIDTKVDFETFFAKAPLINPNINQIKGVICGYRVEDIEHPLMQKIRYLDKLIDELAKGKAMDKILRK
>NZ_CP010817.1|WP_052472683.1|1995283_1995886_+|Crp/Fnr-family-transcriptional-regulator
MNIKLLKKYGAQTVFYEKDDIIFEQGMAPDYFYYIVKGEIKLNTYDDEDERKEFIYSFYSQGQNFGETTIFLKTTYICNAIAVEPTEILKLKQEIFLSLIKENHDFSLLISSNLSRKLYFQGVMAPKISAQDAEKRVLTLLNYGKANWQHPLIKQDLYIVDLTRKEIADMTGLRIETVIRSIKRLKNSNKLRIIKGKIVL
>NZ_CP010817.1|WP_041891689.1|2007080_2007671_+|hypothetical-protein
MFKIKNQEFEVKYAYLDAFMDSSIKQLVFGLQIKAEDTKGRLNRRGLYFNSELLLFINPNELNQWQDIAGYDIEWEDYQEEEGKPRALFYVYEHTGVYNAKVNFRKVDSKIIVKMSATIDIYADEDFDEQLSLEVETEVQFFGILCGKRSAKECTELIGNYLNIDHLKYVQNQYNVSLLVPKDTDMETNLLVLGDF
>NZ_CP010817.1|WP_041895312.1|2007702_2008311_+|PorT-family-protein
MKKLLLTTLAFMAISTAAVAQHHEEGKTKVSFGVKAGFNQTMVTNIDDIVGKSGFHIGGVVEAKFSKRFALQGELLYTTMGGKLESLDIPWISTASYDGKVKLNYIAVPVMAKVFVTKGFNIQVGPQFNFAVKTEAEMNGKTGDIGSAVNKFDLGLNAGLGYDFGNDLFIDMRTSFGVIDVFKDVPASNKNFAFMVGVGYKF
>NZ_CP010817.1|WP_041891692.1|2008410_2009583_-|proline-dehydrogenase
MKNLFNNTEVAFALKNNKELKRAHFLFKMISKPTLVKLGSSLANFAIKTHLPVTGLIRSTVFDHFCGGISEDDCLTVVDNMYAKGGVASVLDYSVEGKETEKQFDAALNMTIKTIEYAKQRPDSIPFAVFKPTGFGRFDMFVKKGEKVAFTAEEEKEWERIVYRFNMACKYAYDHGVLLLIDAEHSWMQDAADDIALDMMRKYNKEKALIYNTAQMYRWDRLQYLKDLHAIAKAEGFHVGMKVVRGAYMEVERERATERGYKSPICVDKAATDVNYDAGVTYMLENIDSMAIFAGTHNEKSSYLIMDLMEKHNISHTDRRLYFGQLYGMSDNISFNLAKEKFNVAKYLPFGPVRDVIPYLIRRAEENTSVAGQTNRELDLIETELKRRKL
>NZ_CP010817.1|WP_041891695.1|2009955_2010984_-|LuxR-family-transcriptional-regulator
MISLPLFNQFPFFATDTPKYIIIGLYYGISFLSLVILLALYIIFKYKKLSFSFFLQLSIFSSFLVKDIIYFYMPDHHATIGYLLAWNIGTSLVLLILLPYPFLRFKHKQQFYKTGIVVLFALVAIELLSNLFIVPSHGNSFIHPITTILTILALYLFFILNHTYNYKNYISFVIICITASTIILAPSINDTLYELFIVWPTLRLMGIPILICSSCITLLEVKKIHERNSIYKRYLYQYMYMVKDYHKQLEYEKSQNADKTNKVEQEKTIIQDQPLYQLKNKYNLTDRELEVLSLLWEGATNKEIADELFISINTCKYHISKIYFKLNINSRAQIYAFKDKLE
>NZ_CP010817.1|WP_041891698.1|2011573_2013358_-|hypothetical-protein
MKLKPIHSFHIPVMGLAYTIDSPVRVAQYGFSSTISVMDDELIERMNKFYCEKFELPYQEITKKIEDFRAKRITAYLNTLDTIVKGKFENLKASFLESKKEVEDYIDMLPSVSEIRKNLQQHLDDKLSIDHLKGLLEHYLTPGDIDVNIMTKVDRENFTKKEALPVEYNDAHAALRGFVNSTLNSSVVLSAGMNPRLFSYFEEFDAFYPTADCTLQKKIILKVSDFRSALIQGNFLAKKGLWVSEYRIESGLNCGGHAFATDGYLMGVILEEFKARKAELISSTHDLLVKALEQKNRFVPSTPLDLKVTAQGGVGTAAEHQFLLEHYEVDSVGWGSPFLLVPEATSVDQSTRELLAKAKEEDLYLSNISPLGVPFNSIKGTSNDFFKSERINKNKAGSSCPRKYLALNKNYSNEGLCTASRKYQTIEIEKLEQEKNSISQEEYNKKYQQITEKACLCIGLANASYMELNLPIKGEAQGVAICPGPNIAYFTKEVSLKKMVNHIYGRDNVIDTKERPHFFIKELRMYLDHYRQEKLALELEQSAPKLKKLMKTKENLLEGISYYKNLFKEDNTYFIQERESILKDLLQVETELLN
>NZ_CP010817.1|WP_041891701.1|2014046_2014322_+|hypothetical-protein
MKRKVIIECPTNLGLAKSTYAKEPGVRFLPTWLEKYGLYSIINPDKIYRIEAPAYSMNLDENTQVRNADEIIEYAIKQANIVEEELNKILF
>NZ_CP010817.1|WP_074761198.1|2014321_2014942_+|arginase-family-protein
MVLGGDCSILIGSALALKRKGRYGLFFLDGHTDYVLPGQLGVHGAAGMDLAIVCGAGHERLTNIQNNKPYIEEEYVFCVGNREYDEEYERPIKDSKVVYYPLSKLRNYGIKRVVSDFLMRVEEYDLEGYFIHLDVDVLNDKIMPAVDCRQEDGLNYKELKEILTPLVKDKRCVGLEIAILDPDLDPLGVYTKEFIENVKDIIETSL
>NZ_CP010817.1|WP_041891704.1|2014956_2015283_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSYNIIATPKFLKEAKKLGKKYHSLKEDLSLLIEELQQNPMLGTALANNCYKVRIAIKSKGKGKSGGARVITHLVIENDTIYLLSIYDKSEYDSISDSEIKELLKLIK
>NZ_CP010817.1|WP_006258805.1|2015272_2015503_-|hypothetical-protein
MITNDVYIVEPSTPEEAKALKAFAKALKIKITKQNTEDTDSKEDIKTNLKQAVTELNLIKEGKLKGISAKDLLDEL
>NZ_CP010817.1|WP_041891707.1|2015867_2016935_+|3-dehydroquinate-synthase
MENITTEHYDILFGQEAYEHLGSYLNNNGYSKLFILTDSNCYEHCLPYFLSNLPTDVPFEIIEVEAGEENKVLDTCAGVIQTMLEQGGDRKSIIITVGGGVITDMGGFIASIFMRGIDFINIPTSLLAMVDASVGGKTGVDLNGIKNCIGAFAMPKMLIIDVNYLETLEARQIKAGYAEMLKHGLIFDAKYYAYLKDIANVDFNDLETLIHHSVTIKNTVVTQDPKEHGVRKILNFGHTVGHAVESYYLMNESKETLLHGEAVALGMVAEAYISKELGYLTQEEYLDIKETIHTIYGVVELSNEDIENSLEWLKFDKKNYGGNIRCVLLDKIGSAIYDIEVSKELVVKGLEAYLN

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Crispr_ID: NZ_CP010817_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_8

2134832-2135157

Orphan

Consensus_repeat	Method
TTCCATTTACTCAAATCTCTATTAAA	CRISPRCasFinder

4 spacers

csa3

The CRISPR arrays of NZ_CP010817_8

>merge|NZ_CP010817|8|2134832-2135157|CRISPRCasFinder
TTCCATTTACTCAAATCTCTATTAAAGGAACTCGCTCCTAAAAACATCGACTGCATATCTGTCACATTAGAGACATTCCATCTACTCAAATCTCTATTAAAACTCATTGCGTAAGCAAATACTTGAATCATATTAGTAGCACTAGATACATTCCACTGACTCAAATCACCATCAAAAGCAACTGCGGCATGAAACATACTCTGCATATTTTTTAAACTAGATACATTCCATTTGCTTAGATCACCATTAAAAGAACTTGCTCCGGAAAATATATACTGCATGTCAGTCACCTTCGATACATCCCATTTACTCAAATCTCCATTAAA

>NZ_CP010817|8|8|2134832-2135157|CRISPRCasFinder
TTCCATTTACTCAAATCTCTATTAAA	GGAACTCGCTCCTAAAAACATCGACTGCATATCTGTCACATTAGAGACA
TTCCATCTACTCAAATCTCTATTAAA	ACTCATTGCGTAAGCAAATACTTGAATCATATTAGTAGCACTAGATACA
TTCCACTGACTCAAATCACCATCAAA	AGCAACTGCGGCATGAAACATACTCTGCATATTTTTTAAACTAGATACA
TTCCATTTGCTTAGATCACCATTAAA	AGAACTTGCTCCGGAAAATATATACTGCATGTCAGTCACCTTCGATACA
TCCCATTTACTCAAATCTCCATTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041891924.1\|2128092_2128347_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041891920.1\|2126559_2127249_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041895330.1\|2128407_2129217_-\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
NZ_CP010817.1\|WP_006260390.1\|2127363_2127693_+\|HxlR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|334619
NZ_CP010817.1\|WP_006260159.1\|2149919_2150810_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|223646
NZ_CP010817.1\|WP_041891945.1\|2145109_2148367_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP010817.1\|WP_041895336.1\|2149075_2149918_+\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP010817.1\|WP_041891934.1\|2140275_2141463_+\|calcium:proton-antiporter	unknown	unknown	gnl\|CDD\|223464
NZ_CP010817.1\|WP_041891916.1\|2123891_2124794_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
NZ_CP010817.1\|WP_041891937.1\|2141784_2142534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP010817.1\|WP_052472692.1\|2129255_2133593_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|376100
NZ_CP010817.1\|WP_041891927.1\|2136469_2138143_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP010817.1\|WP_041891940.1\|2142488_2143370_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197317
NZ_CP010817.1\|WP_052472694.1\|2133611_2133818_-\|MBG-2-domain-containing-protein	unknown	unknown	gnl\|CDD\|376100
NZ_CP010817.1\|WP_006260391.1\|2127759_2128005_+\|DUF2132-domain-containing-protein	unknown	unknown	gnl\|CDD\|378300
NZ_CP010817.1\|WP_041891943.1\|2143363_2145100_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|369630
NZ_CP010817.1\|WP_073144814.1\|2125586_2126003_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP010817.1\|WP_041891932.1\|2138654_2139620_+\|LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274657
NZ_CP010817.1\|WP_041891929.1\|2138277_2138577_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_CP010817.1\|WP_041891918.1\|2124814_2125522_-\|phosphoadenylyl-sulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041891916.1\|2123891_2124794_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP010817.1\|WP_041895330.1\|2128407_2129217_-\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	2.81271e-09
NZ_CP010817.1\|WP_006260390.1\|2127363_2127693_+\|HxlR-family-transcriptional-regulator	gnl\|CDD\|334619	pfam01638, HxlR, HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.	2.5883e-32
NZ_CP010817.1\|WP_006260159.1\|2149919_2150810_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	5.00657e-93
NZ_CP010817.1\|WP_041891945.1\|2145109_2148367_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP010817.1\|WP_041895336.1\|2149075_2149918_+\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.72013e-66
NZ_CP010817.1\|WP_041891934.1\|2140275_2141463_+\|calcium:proton-antiporter	gnl\|CDD\|223464	COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and metabolism].	1.70177e-75
NZ_CP010817.1\|WP_041891937.1\|2141784_2142534_-\|hypothetical-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	4.73324e-20
NZ_CP010817.1\|WP_052472692.1\|2129255_2133593_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|376100	pfam18676, MBG_2, MBG domain (YGX type). This domain is found in a variety of bacterial extracellular proteins. This domain is related to the MBG domain (pfam17883). But it replaces the characteristic YDG motif close the N-terminus with a YGX motif.	4.49948e-22
NZ_CP010817.1\|WP_041891927.1\|2136469_2138143_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	8.05893e-05
NZ_CP010817.1\|WP_041891940.1\|2142488_2143370_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197317	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds. Their substrates range from nucleic acids to phospholipids and perhaps, proteins.	4.09035e-112
NZ_CP010817.1\|WP_052472694.1\|2133611_2133818_-\|MBG-2-domain-containing-protein	gnl\|CDD\|376100	pfam18676, MBG_2, MBG domain (YGX type). This domain is found in a variety of bacterial extracellular proteins. This domain is related to the MBG domain (pfam17883). But it replaces the characteristic YDG motif close the N-terminus with a YGX motif.	2.37523e-17
NZ_CP010817.1\|WP_006260391.1\|2127759_2128005_+\|DUF2132-domain-containing-protein	gnl\|CDD\|378300	pfam09905, VF530, DNA-binding protein VF530. VF530 contains a unique four-helix motif that shows some similarity to the C-terminal double-stranded DNA (dsDNA) binding domain of RecA, as well as other nucleic acid binding domains.	6.7466e-40
NZ_CP010817.1\|WP_041891943.1\|2143363_2145100_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	5.01041e-42
NZ_CP010817.1\|WP_073144814.1\|2125586_2126003_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	1.4973e-35
NZ_CP010817.1\|WP_041891932.1\|2138654_2139620_+\|LLM-class-oxidoreductase	gnl\|CDD\|274657	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB\|2B81. [Unknown function, Enzymes of unknown specificity].	1.49179e-144
NZ_CP010817.1\|WP_041891929.1\|2138277_2138577_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	5.33239e-10
NZ_CP010817.1\|WP_041891918.1\|2124814_2125522_-\|phosphoadenylyl-sulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.91303e-87

>NZ_CP010817.1|WP_052472694.1|2133611_2133818_-|MBG-2-domain-containing-protein
MTIDKASLTVTANPQSKIYGAVDPKLDYAVFGLIEGDLLSGSLSRVAGEDVGVYAITQGTLIANSNYS
>NZ_CP010817.1|WP_052472692.1|2129255_2133593_-|T9SS-type-A-sorting-domain-containing-protein
MTIDKASLTVTANPQSKIYGAVDPKLDYAVSGLINNDKETTVLSGSLSRALGEDVGTYAITQGDLKATGNYSLSFIGADLVITPALLTVSPTTQSKVYGAADPALDYKVSGLVNNDKETAVLSGSLSRALGEDVGSYAITQGDLKANGNYSLSFIGADLVITPALLTVSATTQSKVYGAVEPKLDYTVSGLVNNDKETDVLSGSLSRALGEDVGSYAITQGDLKANGNYSLSFIGANLTITPAVLTVSTNPQSKVYGAVEPKLDYAVSGLVNNDKETAVLSGSLSRKVGEDVGTYAITQGMLIANSNYVLSFIGADLTITPAVLTVTATLQSKVYGAVDSKLDYTISGLVNNDKETAVLSGSLSRAVGEDVGSYAITQGDLKANGNYTLVFKGANLTIGKAPLTVTANAQSKVYGAVDPKLDYTVSGLVNNDKETDVLSGSLFRKVGEDVGTYAITQGTLIANSNYVLSFTGADLNITPAVLIVSATAQSKVYGVVDPKLGYTVSGLIEGDLLSGSLSRAVGEDVGTYAINQGDLKANGNYALSFAGANLTIDKASLTVTVNPQSKIYGAVDPSLNYTVSGLVNNDKETAVLSGSLSRVAGEDVGTYSITQGDLKASGNYTLDFKGASLEVTPAVLIVTVNTKSKVYGDADPSLNYTVSGLVNNDKETDVLSGSLSREVGENVDNYAITQGTLIANSNYSLSFIGANLTIGKAPLTVTANAQSKVYGAVDPKLDYTVLGLVNNDKETDVLSGSLFRKVGEDVGSYAITQSDLKANGNYTLVFKGANLTIGKAPLTVTANPQSKVYGAVNPKFDYTVSGLQFIDKETAVLSGSLSRAVGEDVGSYAITQGDLKANGNYILDFKGASLEITPAVLTVTANPQSKVYGAADPALDYTVSGLQFIDKETAVLSDSLSRAVGEDVGTYAITQGDLKASGNYTLDFKGASLEITPAVLTVTVNTKSKVYGAADPKLDYTISGLVNNDKEIDVLSGSLSRALGEGVGSYVITQGDLKANGNYTVDFIRANLTIEKAPIIGMVLKGGTYVYDTKEKSVLLSSTLPIGTKVTYKNNKQTEAGEYEVTALIEGDNYIPLLLKTKLIINKAPQHIEFNALSPVLYDNLLQLQLIANSSVDLPINYTYMNVGTTVAATVTSTGLVKVLHPGSVIITAHQDGNNNYEPAQSVSQILVIKSDKAEINSLIINGRDIGELSSNKLFMLRCDEIDKQVEVELVTSEGASVNIGNHFFIDTPKAGIYNREIVVKSHSGTITNRYILSIERPFNFEDIVIQKFDNTLLVNNNPLTNGGYRFVGYKWFKNGKLIGNEQVYSVGNHRDDLLDIDALYSLELTTDKGEIIHSCPAMIKYTHTNSIKLYPNPVVKNGVMEIALDYPESSLKNITGSVYSLTGQFLFKVSLENKISEVILPNTLVEGVYLMIIKIEGQNKVFRFMVKP
>NZ_CP010817.1|WP_041895330.1|2128407_2129217_-|PorT-family-protein
MLVVLSCTTSFAQEVDFSIGGYFTNSLKTDNDYDTNTSLGYQIGVGYRYYLNSQWSLGAEINYKYSKLDFIQRNVKENWSVIDIENHDYEFRYNSKYRKESVSFNTFQIPLTIQYETKGIVKWYIRSGVSIGIITGDSKSKITMNDLHTSGYYKDWDAELHGPHYMGFGAFGNQTRKRNLDLSTRYSWLLETGVKQELGNKQNLYVGVFLDLGLTNLVKDNKRIDTPISHVSNYDNPLEYHSIWTQEKYKDTNLKDYYIGIKLRYSFSL
>NZ_CP010817.1|WP_041891924.1|2128092_2128347_-|hypothetical-protein
MNKPITPETLKEIAFNVTLEQYNDIIEKLHHSASKGQKSLLIDNLSDTVQSRLIEEGYRIKPYVKYQYDYLLRKKRKKYYVISF
>NZ_CP010817.1|WP_006260391.1|2127759_2128005_+|DUF2132-domain-containing-protein
MQVSKDPLHGKKLVDILEELVEYYNGFEELGNQINIRCFTHDPSINSSLKFLRKTPWARDKVESLYLYVLRQKAKQQKSEE
>NZ_CP010817.1|WP_006260390.1|2127363_2127693_+|HxlR-family-transcriptional-regulator
MTKNKIEKVEHKCTLHDVLEIVGGKWSIPIIFTLFDGTKRFSELEREIPNINTRMLVKELKKLQQTNIITRDALPTVPPTVNYTLTHKGQMLEPILRAFLKWGEEFIDK
>NZ_CP010817.1|WP_041891920.1|2126559_2127249_-|hypothetical-protein
MRFRSICKMLLILSSLFYSVSIVAQQQDEEVNKDSIVVNPPVNVETLIGSRGVTFNMLLNKRFQSLPKVGFFSVVNYVGEWGEPDVKDRMIQGQLTYTVIKGLDVTAGFHYDPEFGVKPAAGLLYTWVKKDWVVVLNGRVDIMSKPAYEGMALVEYTPKLNDTFKLYTRAQGLYGYATEWKGHSRSYIQGRVGLSYKEFSFGVAANIDFYGPLKVNENSFGGFVTMLLF
>NZ_CP010817.1|WP_073144814.1|2125586_2126003_-|Rrf2-family-transcriptional-regulator
MLSKRCKYALKAMVCLARVYQNGHLTIATIAEKENIPKKFLEQILLELKRVKLVNSKKGLAGGYYLIKDPKEVSVADLYRIFDGPIALTPCVSINYYEPCDDCEDEVSCYLRKQFMEIRDKTRKSMSEATLQRFIDGD
>NZ_CP010817.1|WP_041891918.1|2124814_2125522_-|phosphoadenylyl-sulfate-reductase
MSLKNQYKKLLESGLEALSFKEQMKYLKEHFESITFSTSFSYEDQVITHLLKDEGKVSFFTLDTGRLFDQTYDTWSLTLAKYKINITAYFPESSLIAEFVNKNGPDSFYKSVELRKECCTIRKVLPLKKALKNQQIWITGLRAEHSPNRQSLTPFEWDEHNQIIKFHPLLSWSTEEVTAFIEQNQIPYNPLHKQGYISIGCSPCTRAIREGEDFRAGRWWWEDASKKECGLHLKQ
>NZ_CP010817.1|WP_041891916.1|2123891_2124794_-|sulfate-adenylyltransferase-subunit-2
MIENNYLETLEQEAIYILRETAAQFEKPALLFSGGKDSIVLVHLALKAFRPGKFPFPLVHIDTGHNFPEAIAFRDKLVDQIGEKLIVGSVEDSIQKYKLKETQGRFPSRNSLQAYTLLDTIQEHEFDACIGGARRDEEKARAKERIFSLRDDFGQWDPKLQRPELWDIVNGNMQAGHNTRVFPISNWTELDIWNYIKANDIELPELYFAHERECIEYNDKLIALSSFTPAVEGEKVVKSSVRYRTVGDMTCTAAIASNAITVDDIIEDIKNSRISERGQTRLDDLLSESAMEDRKKKGYF
>NZ_CP010817.1|WP_041891927.1|2136469_2138143_-|tetratricopeptide-repeat-protein
MTTKLFTFFLFLFIVACTDTKHLDNQQYDILINEYYKTGTVEVDDIGNITERKVIGNILKGLSHLEVTDSINDITTSLFLESVSMVEKSSNVALKEWVYSEVGFYYYSYNYYYEASPYFIKIAKTLENKSIVLDVQAKNILLRTAYFFETMNMNESALIYYRKALEEGEKEQLNNSAVLWGLGTVYSKVDSLDQSMRYYELAKETSLSYKDTLRYAKSLGGIASVYQKQGDIEKAELYLKEDIEISQQLGEERNLMYSQIQLGKLYMDRKQYDLAEEVLKNSYEITKTKSYLAGFEREIISYLLDIAKARGIDTEELSYRRELDQIDSVIEAREGEEVINKINWNTNLERVNWELEAEKSFSERVRYQRLLLLSTTVLLTLILCMVYFFSKRILKLQKYAYEGKLLDFQLSKINSENKLKETKASLASYQVYLSEKTAQIAKLEHELNKASHSSKEIFKEKRPAIEELLRSHLMTEENWVLFKETFREEQAVYFNEIITQFPDLTESNLRIVLLQKMELTNQETANILGVTIDAVKKAKQRLKKKYEDDYSALFSKE
>NZ_CP010817.1|WP_041891929.1|2138277_2138577_+|helix-turn-helix-transcriptional-regulator
MTELFKALSNEHRVQILKWLKAPHDFFELEDIEPEVHEFGVCMSVIQKKAGLSQSTTSAYLTNMVNIGLLTSTRNGQWTYYKRNEDKIAELANYIQNTL
>NZ_CP010817.1|WP_041891932.1|2138654_2139620_+|LLM-class-oxidoreductase
MNNNFKNHKTFNNVFTPGKLSLGIFLPLQVYDNNIAIFNQHLKYIQQIDTSGFAALWVRDIPVYDPSFRDVGQVYDPLSYLAYIAGQTTNIALGTASIVLPLHHPISLAKTTASIDQLSNGRLLLGVGSGDRYAEFPAFNKSFERRGELFREVLQDMQALHTTDSPKINSSITQMQNLDLVPKPLHKHIPTLVTGASQQSLDWIATHADGWITYPGPTTTNEDTLHLEQKIKAFRDLIPNGTFKPHMTNEWIELDEDPHYPRTPLRGGFVLKTGRLGLIELLHKWQEIGVNHAAIGIQFGKRDIGETLDELAKEVLPYFNY
>NZ_CP010817.1|WP_041891934.1|2140275_2141463_+|calcium:proton-antiporter
MTQDNVNKGLSLASIFPTKTRIRLAVVWLIVILFMLFGSSITGDSLSPLLATSIFLILLFTIVGAAFGVVKEADELAHKLGEPFGTLILTLSIVSIEVILISAVMLGPGENPTIGKDSIFSVMMIIMNLVIGLCILLGGLKYGEQEYNAQGTMSYLAMIIMLGGIGLMLPNFIQGAGGGMFSDTQAIVLALFIIILYAVFLFFQMKGYRHLYVQPQKGSMEIPYKDRAIADIQSTDEHQTSVGNKGEIWIRSIILIGMILPIVLLSHNMAVVVDYGIKAANLPTLLGGVLVAIIVFTPESMTAVKAALNNEFQRAINLCHGAFVSTVGLTVPSVLIIGLITGKTVLFGMTSTETILFVITLLLSLMTFLGKRTTPIMGIMHLVLFAVFTLLIFYP
>NZ_CP010817.1|WP_041891937.1|2141784_2142534_-|hypothetical-protein
MGRINYQSIKKKSEVRVLNYNVHHFAAAYDSYHKIDLNSLAAVILRDEVDIVTLQEVDVHTMRSGQYLNQVKVLAEKTGMFYAFGKTIDYEGGDYGIAILSKFPIVEQHFYKLPFVDNKEEQRGLLVCKIDLGEAQMINIGTTHLSSSNEQSRLLQTKRIAELQRESTFDFLTGDLNAEINSKPVEQLKTTFDLDTRFMNQMTIPAYKSDKKIDFMIRSINSTIKIIRQDTYQMNALSDHNLMISDITL
>NZ_CP010817.1|WP_041891940.1|2142488_2143370_-|endonuclease/exonuclease/phosphatase-family-protein
MVRSILLSVLFIGTSIFAQEKEPQTLKAMTFNIRMDTSNDGINQWSNRKEWVAEVVFFNDVDIVGMQEVLHNQLVDLENLLPQYDYVGEGREGETKGEYSPIFYLKDRFKVLESGTFWLSETPYEKGVKSWDSSLPRIATWARFEDKKSGKTFIHLNTHFDHRGKEARQRSVEVINQELAKITKGETVVFTGDFNLPPTDLPYQKIIESKFVDTRDAAMYRSELGYTHNAWKIEAPKSSRIDYIFLRGLDLAPIKYRELDIQRGPLFASDHYPVFTEFRWVESTTKASKKKVK
>NZ_CP010817.1|WP_041891943.1|2143363_2145100_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKRYKILAILMATGFLGSCSEDFLERDPISSVTSENFFKKESDLILFSNSFYRMFPTTSIYNGDYRTDNIIQNILSDEMRGGRVVPPSGGGWSWNNLRDINYFLVNFEKVGDEALIKHYGGLARFFRAYFYFEKVTRFGDVPWYDYLLTAEDEAALQKPRDPRKLLVDNMLKDLDYAIENMRSTKDVYRVSKWTALALKARIGLYEGTYMKYRGLPGYETYLEQAYQAAEVLIKESGYKVFSTGNPDKDYQNLFASHKAIGDEIILAREFSTELNVRHNVNYYTVAASYGRPSMPKDLINSYLMKDGSRFTDRSDYNKMLFQEEVKDRDLRLSQTIRTPGYTRIGSTIQLTPDFSAATTGYQLIKYVAEAQYDTNNASIVDLPLFRFAEVLLVYAEAKAELGIIDQSDLDLSVNMLRKRVGMPDMVMAEANAKPDAYLAKQYVNVNGANKGLLLELRRERRIELFMEDHRWDDIVRWKEGQKLVQNIEGMYFNGPGKYDLDNNGKTDIYLYEGSRPTENVQGVYYAKLGSDIHLNQNNSIDPFPNNKNRTWNENKDYLYPLPIQELQLNTNLKQNPGW
>NZ_CP010817.1|WP_041891945.1|2145109_2148367_-|TonB-dependent-receptor
MKKFKVCCYIAFLFYSGFLVAQESKPPVSSPLISIVIEQDETLGKVVTELASKVAAKVNIEDSTLKETPLIAYEGKAARLQDILEVIAMQTGYTVNYTNGVITVKNDQFNTHLEDITLVAIGYGDKKKQNITTSVTEVDTRALKNRPLSNAVSALQGTTPGLNITNSSGKEDAEANINIRGFNSVNGGGPLVLIDGVEGSLSNINPDDIESISVLKDAGAAAVYGARGAFGVVLVKTKNPGVGEIKVSVNSTMNILSQTQNTDFVTDPYLAAKIVDQAFITGSGRSYTGYNEYDYEQLKAVSENPALARVEIQNRNGRDQYVHYGSTDWWNYFWKDTRYSYINDISISGGSEKVKGYFSYRNYSADGLLKVQDDKYKKNNLRAKFDIKINDWISFSTNNQYFKSSDLVHGGTQYGWRDPWTSEMLVHALPSYVPVNPDGGALWRTELNNYTIGDGYFASLLHGKSNRTAVRDEFSTINAFHFKPLKNLDVHASYAYKKNTRDINERSTLIPYSILPNQIQYFGENKLNVNETIEDYNALNIYGQYRLDFGDHNFDFMAGYNQEYFKNDNRIMSIQNLISDDLDNLGLGSSNPTVVGSAYEWALRGYFYRFSYDYAGKYLLELNGRYDATSKFPSEQRWQFFPSVSLGWNVANEPFFKRTFGFWNQFKIRASYGELGNQAIGAYAYIPTLNKAIDKGYALDGALLEYMQAPSLNPRDITWETVATSDIGFDLGFFQNKLNVSFDYFQKDIDGMLTKGRTLPGVLGTDSPRENAADLRTKGFEVSVGYNDSFKLAGSDFNYSVSAGLSDSKTKITRFDNPTGLLTDYYVGMELGEIWGYSVEGLFSSPEQIANHADQSRVSAHIIANGGLQPGDVMFKDLNGDGIVSEGANTLENHGDMRKIGNTAPRYQYNFRLAFDWKGIDFSAFFQGVGKQDWYPDTDSRMFWGPYNRPYNSFIRQDLANDIWTPENTDAYFPRLVGYTSLGSNRQLGVQNDRYLQDISYLRLKNITLGYSLPQDLVKRVKMDKVRIYVSGENLFTFTNLTDYIDPEAASNSFDFNSPNSARKRTNAQSFPFSKIISFGVQLNF
>NZ_CP010817.1|WP_041895336.1|2149075_2149918_+|phosphate-ABC-transporter-substrate-binding-protein
MRKSLVIFSSLLLLSCGNKDHSIKMKGSDTEVNLAVNLAEKYTLIDSDFSIAISGGGSGIGITSLLNGQADIANSSRPLSDKEIAQFENKNIKLRTVIFAEDATAFVVHKDLPIEEIDLETLAKIMKGEITNWKELTSVDLPINIYGRQSSSGTHSFIKKKLKIEFSNAAKEMTGNAQILEGIKTDKSGIGYVGAGYISHETATNPTVKILSIKETPTSQAYSPIDSNAINNSLYFFQRPLYQFILEDSWEKVKPFIDFENGEIGKQLIKEHGYYIIERP
>NZ_CP010817.1|WP_006260159.1|2149919_2150810_+|phosphate-ABC-transporter-permease-subunit-PstC
MKYNVRIGLDVTFKYIFKATGLLVLCLLGGILAMLIYNSISFFMDVKPLDFITGMEWNPTAKNPVYGMLPLILSTTIVTLGAMLIAIPLGIGTAAFISEYAGTRLKNILKPAIEMLAAVPSVVIGFLGIVVVSPGLADMAGLPNGLNALNGAILLAIMALPTIITIAEDAIHAVPKTYKEASYGVGATKWQTLRKVILPAAAPGIISAVMLGVGRAIGETMTVLMATGNAALIPTGFFDSVKTMTATIAIEMGEVPYQTTHYYGLYALATVLFFMTLIANLVGEYFINRLRKYHAA

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Crispr_ID: NZ_CP010817_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_9

2159777-2159885

Orphan

Consensus_repeat	Method
TGGGCGTAATGTTTTACGCCCCTACCTGTGTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010817_9

>merge|NZ_CP010817|9|2159777-2159885|CRISPRCasFinder
TGGGCGTAATGTTTTACGCCCCTACCTGTGTGTGCCGATAGGATGTTGGTATTGTGTTATTGACATATATTTTATTTGGGCGTAATGTTTTACGCCCCTACCTATGTGT

>NZ_CP010817|9|9|2159777-2159885|CRISPRCasFinder
TGGGCGTAATGTTTTACGCCCCTACCTGTGTGT	GCCGATAGGATGTTGGTATTGTGTTATTGACATATATTTTATT
TGGGCGTAATGTTTTACGCCCCTACCTATGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041895340.1\|2163587_2164118_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376808
NZ_CP010817.1\|WP_041891986.1\|2166817_2168806_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP010817.1\|WP_041891956.1\|2154206_2155418_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041895342.1\|2164220_2164595_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|334619
NZ_CP010817.1\|WP_041891960.1\|2156268_2156958_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041891948.1\|2150799_2151657_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NZ_CP010817.1\|WP_041891975.1\|2162080_2162710_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041891954.1\|2153654_2154203_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP010817.1\|WP_041891984.1\|2165925_2166792_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188567
NZ_CP010817.1\|WP_139177151.1\|2159148_2159517_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
NZ_CP010817.1\|WP_041891979.1\|2162780_2163569_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP010817.1\|WP_041891962.1\|2157139_2157694_-\|membrane-protein	unknown	unknown	gnl\|CDD\|182489
NZ_CP010817.1\|WP_041895339.1\|2155595_2156279_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP010817.1\|WP_041891965.1\|2157909_2158908_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP010817.1\|WP_006260146.1\|2160819_2160957_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_006260157.1\|2151646_2152393_+\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224042
NZ_CP010817.1\|WP_041891973.1\|2161045_2161864_-\|GLPGLI-family-protein	unknown	unknown	gnl\|CDD\|273495
NZ_CP010817.1\|WP_041891951.1\|2152496_2153459_-\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP010817.1\|WP_041891981.1\|2164823_2165846_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|376999
NZ_CP010817.1\|WP_041891970.1\|2159925_2160690_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041891986.1\|2166817_2168806_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	9.97067e-29
NZ_CP010817.1\|WP_041891965.1\|2157909_2158908_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	2.35685e-41
NZ_CP010817.1\|WP_041891948.1\|2150799_2151657_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	4.35843e-91
NZ_CP010817.1\|WP_041895340.1\|2163587_2164118_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	9.55367e-44
NZ_CP010817.1\|WP_041891984.1\|2165925_2166792_-\|hypothetical-protein	gnl\|CDD\|188567	TIGR04052, hypothetical_protein_MettrDRAFT_3899, AZL_007920/MXAN_0976 family protein. Members of this rare protein family regularly occur next to a member of the MXAN_0977 subfamily (TIGR04039) of the di-heme cytochrome c peroxidase/MauG family (pfam03150). MauG itself (TIGR03791) is a protein modification enzyme responsible for the tryptophan tryptophylquinone (TTQ) modification involved in methylamine dehydrogenase activation. All members of this family have a motif of four spaced invariant Cys residues, while additional homologs outside the scope of this family lack the four Cys residues.	1.99929e-13
NZ_CP010817.1\|WP_139177151.1\|2159148_2159517_-\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.22474e-05
NZ_CP010817.1\|WP_041891979.1\|2162780_2163569_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.87699e-64
NZ_CP010817.1\|WP_041891962.1\|2157139_2157694_-\|membrane-protein	gnl\|CDD\|182489	PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional.	1.27809e-75
NZ_CP010817.1\|WP_041895339.1\|2155595_2156279_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.42043e-07
NZ_CP010817.1\|WP_041895342.1\|2164220_2164595_+\|transcriptional-regulator	gnl\|CDD\|334619	pfam01638, HxlR, HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.	1.05703e-34
NZ_CP010817.1\|WP_006260157.1\|2151646_2152393_+\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224042	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism].	2.31274e-153
NZ_CP010817.1\|WP_041891954.1\|2153654_2154203_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	7.73043e-15
NZ_CP010817.1\|WP_041891973.1\|2161045_2161864_-\|GLPGLI-family-protein	gnl\|CDD\|273495	TIGR01200, conserved_hypothetical_protein, GLPGLI family protein. This protein family was first noted as a paralogous set in Porphyromonas gingivalis, but it is more widely distributed among the Bacteroidetes. The protein family is now renamed GLPGLI after its best-conserved motif.	1.12068e-29
NZ_CP010817.1\|WP_041891951.1\|2152496_2153459_-\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	7.23619e-138
NZ_CP010817.1\|WP_041891981.1\|2164823_2165846_-\|c-type-cytochrome	gnl\|CDD\|376999	pfam03150, CCP_MauG, Di-haem cytochrome c peroxidase. This is a family of distinct cytochrome c peroxidases (CCPs) that contain two haem groups. Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidisable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site). The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognized.	1.72099e-65

>NZ_CP010817.1|WP_139177151.1|2159148_2159517_-|hypothetical-protein
MYLSDIGKIVKDCWLKIDTFHPYVVLHDFVIMPNHIHGVIQIVQETVTIKKEGFESTSKTIGSIIRGFKSGVSCTVIKSVGIKNIWQRNYYDRIIRDYNEYQNVTNYIINNPRMWSKDSFYK
>NZ_CP010817.1|WP_041891965.1|2157909_2158908_+|OmpA-family-protein
MKKTTLLLAMALIVMSCNQKNKEENNPEITTEQTSTNVEEIDTPKAGFNIEDIAYSKADIGTFPFFTLPKGLKEMNKPFQKNFDVCYFPIDGVMTPIEGKLYKTNVTAVAGEEFSQRYFEKSLEDYLNSIGAVKVFEGEITEKEYERYNKQDPNKGDEGDIGYTGELIKLYIIRTHNQGNVYIQYTANNAGGKLNILQEEALQQTITKITADKIVKDLTEKGKSILYINFDIDKSTLTQDGEKTVDEIAIALKKDPSLKISIEGHTDNTGEASHNKKLSTDRANAVMNALIKQGIAKENLSAKGLGADNPLVTNDSDSNKAKNRRVELIRVK
>NZ_CP010817.1|WP_041891962.1|2157139_2157694_-|membrane-protein
MNYFIRFSLLFFCATFLMSCNNSDIPERATPVTNFDVERYLGTWYEIARFDFRFEKDLNNTSAQYSLDKDGNVEVLNSGYNYVEKEWSVAKGVAKFRKDKGTAALKVSFFGPFYSGYNVIALDEDYRYALIAGKNLDYLWILSREKTLPEDVKVKYLEIAKEVGYDISKLIWVEHDKDNNPYLK
>NZ_CP010817.1|WP_041891960.1|2156268_2156958_-|hypothetical-protein
MTIYSYHLVKVSLWMRLKLLFNSHRLKRQKGLLHIEVMSSMVLGSPIFSLSRLKLRHVVIFAQWEDECVLDYFLIYNKVGRTLAKGEYLKLKLIRQWGNVSGFVPEELESISEDQSASVVAVTVARMKFLQIPRFIKWGRPVEMLVRDHPGVLFATASIGFPHRVSTFSIWNTQKDMLDMVKGHGKVDEPNRHIDAMKERERKDFHYEFTTLRFSVISASEKWGSKVKE
>NZ_CP010817.1|WP_041895339.1|2155595_2156279_+|CPBP-family-intramembrane-metalloprotease
MKIQHKLIYPILLYCLLYTVITATYFSLNFIGNTEYQSVLASVPLILLSIYFIKKHKLPIRISLKLNTDSKSKRDLIKYTSLFAVIFLVVNSLQIFLSDSSDIRYDYLEQIWFFILICFPIKALGEEVLYRGLIQNYIDKYIRPSSKSISPGNIITAALMTIAHLGFFYIMPLPNAILAFILVFFASLFFGYISKITNRNILYCTVIHIFLNYIHVAIQCFYISFIL
>NZ_CP010817.1|WP_041891956.1|2154206_2155418_-|hypothetical-protein
MSRQLFYIILFFLPFFCYAQYTVQEYYEFLKESKQSPKDYIFELFKTNDIVILGERDHRESTQYDLILEILKDNRFINEIGHVYTEVGVVNQTNRGNIVVKGDYNKQEEFEKEFVLLYRELDYNALWDKFNMIKYLKGIYDINKDLSTQKKITIGFTDCAFEWEGMTREKYLDFERKYLSTSNTRDSIMAYNFIELYEKQRPINGHKKALYIQNRPHAEKIDDIIGNLKVKTVGGYLKEKYRHQVKIVALNWYNYESENSKSPEYGKGHKIELSNDGKWDAAFEMTGNKPIGFTLKGTPFGQTHFDYPYGDDDKVLYQDRLDGIIFYKPFYQFSCTRGLPRIVDKQFAKELIQRQIITGVYEEGEHYAIEDEIEDWESFRTYDCVDYSTMIQQMNKWLSKKSE
>NZ_CP010817.1|WP_041891954.1|2153654_2154203_+|GNAT-family-N-acetyltransferase
MLFTPITTSLKNNKQVTIRLASSNDASTLLDLIKQYLDTSEYIPITSSDFNKTVAEIEAWIEKLNSANNSIMLVAEHNGQLIGNLDLTGHHRKTLQHTAILGMGILLEWRNTGLGTALLNSAVEWAKRNNTLEILTLEVYSENIAGIALYRKQGFKEIGIIPNFIKDNDRYYDNMSMWMALR
>NZ_CP010817.1|WP_041891951.1|2152496_2153459_-|D-2-hydroxyacid-dehydrogenase-family-protein
MKITILDDYQHVIKNLKCFELLKGQDVTVLHQSEKDISKLADLLQQTEILVLTRERSEITEELLSKLPNLKLISQTGKISNHLNLDICTQYKVAVAEGIGSPIAPCELTWALILNTIRKIPQAIQGMKEGKWQINIGTNVSGKTVGIWGYGKIGQKLAQYAKAFDAKVLVWGSESSRAKAVEDGFMSADTKEEFFSTADIITVNLRLNKDTYGIVKEQDIRLMKENAVLVNTARAELIERGALLNVLQSGQKLLVGVDVYEQEPIYDTNYELLHFDNVVCTPHIGYVEESSYELYFGTAFENVISYIKGRPLHIANPEVL
>NZ_CP010817.1|WP_006260157.1|2151646_2152393_+|phosphate-ABC-transporter-ATP-binding-protein
MKTKLSAENLNISFGSKQVLKNVSVEFEENKITALIGPSGCGKSTLLRSFNRMHDLVPYAKINGTIKLEDMDIYSKTIPVTEIRKRIGMVFQKANPFPKSIYDNIAYGLKINNLPHDKSVIEKALTEAFLWDEVKDDLKMPAHRLSGGQQQRLCIARAVALRPEVILMDEPCSALDPVSTIKIEELILHLKEKYTIAIVTHNMQQAQRIADQTYFMYLGEVKESGLTQDIFENPKHEMTKNYINGVFG
>NZ_CP010817.1|WP_041891948.1|2150799_2151657_+|phosphate-ABC-transporter-permease-PstA
MQHNKLKLSSIIEWGTLVGTTLIVCFFLVVIILEIVTKGMGSLSWEFISTIPKEGMTKGGILTPIIGTVLITLITALFSIPFGVFCAIYLNEYAENNWLTRTIRAAIRNLSGVPSIIYGLFGLALFVQTLSLGTSLLAAGLTLGLLSLPYIITTTEEALMQIPNSTREAALAVGATKFETIKDVVIPSAVPGILTGVVLTLSRAAGETAPILFTGAAFYISDTNGYLNQEFMALPYHLYMLSTQHQSIEEVRPIAYGTALVLIIVVFLLNLSAFYIRYKFRKNEN
>NZ_CP010817.1|WP_041891970.1|2159925_2160690_-|hypothetical-protein
MKQLLVLFMVFFGIGATYAKCGSFGLSAFPNGSTINQNSIFMIEGYADSQSIIKALNKEYPIYLKSGDKIVPLIVTETYVGSFNLTQAILKPDTELEAGLEYTLVIDNLPQHDKLERRNTESGKYEAITYKVLPTVDTDKPVVASKPKIEKKENVMYGCGPSSNVIFSNPAKDDSEFLVKTTMKNVKTKEETTYYLVAYKDTISVGHGMCSGAFSFKRDNDYEIEFAFMDSSGNITEWEGKRIKFSPPTFKGIF
>NZ_CP010817.1|WP_006260146.1|2160819_2160957_-|hypothetical-protein
MGRNTPANRKAVKDKIDKKKKKEQEAAVKRKALLKEIVNQMANKK
>NZ_CP010817.1|WP_041891973.1|2161045_2161864_-|GLPGLI-family-protein
MKKLCLILTLALVGNTFAQESNDSIAISRFFYSTKIVKDPQKTDQITEGVAILDINQSNSRFTDYGSLQRSEFMATSKTDKSLSRMDIMNKLRQFKSGFAWSVYSNADENKFYLEQSRQKYYYKEDKNSIKWTIAPEVTQWEGYKVQEATTSYGGRVWYALFTTDIPALNGPYKFNNLPGFVVKAWDAAGEYVFEFTNSQNIKLAKDALDGLANYEEVSRKQAKKADKVFYNKTAIDLLIELNPGNAKNIDQYPAEMKQKLILSSNPIEKDF
>NZ_CP010817.1|WP_041891975.1|2162080_2162710_+|hypothetical-protein
MGYYIFSYGIKTDQILNAFGSKDSKLQKEVEENDVFQDYSDFEVDDSKTSTNQALIDIIQKNPFNHKSNYAYGYALIGLCDTLGKELPYGQEIKLGYETDLINKVLTEDFSIKDIEIEKYLLADNSHPFPIPKIVEWPLIGLIRQPQLQELKTKLLSLNITEEQIEELEDDPEDREFTYAHLKGILDNINYCLDNNLELISFCHKEIYC
>NZ_CP010817.1|WP_041891979.1|2162780_2163569_-|PhzF-family-phenazine-biosynthesis-protein
MTLELYQIDAFTEHIFHGNPACVVPLKSWLPDEVLFKITRENAVAETAFFIDNGDSIHLRWFTPEIEMDLCGHATLATAHCLSSILNYPKDRIVFDTKSGELIVEVKDGMYYMDFPSRMPEASALPDVIAKSLNIQPKEVFKSRDYILVYESEEDVKNIKVNQSVLDLINLDPGGVVVTSVGEESDFVSRYFTPQSTILEDPVTGSAHCSLIPFWSSRLGKHTLFAKQISERGGELYCENKAERVIVAGKARVYSKGQFWIE
>NZ_CP010817.1|WP_041895340.1|2163587_2164118_-|NAD(P)H-dependent-oxidoreductase
MRTLVILTHPNFGESIVNKLWIKELEQSPERYCIHNLHSEYPDGILDIQKEQELIESYDHIVFQFPFYWFNCPPLFKTWLDEVLTYGWAYGSQSGYKMSNKKIGLAISAGIDEQEYSAEGKYKYTLEQLLAPFEVTFNYIKADYQGFYAYYGIEQDSSVETIKNSVIPYIQFIETI
>NZ_CP010817.1|WP_041895342.1|2164220_2164595_+|transcriptional-regulator
MTKIKETSTHFENKKALENECNEVYATSIIGGQWTMAICCYLLEGKMRFGEIKKVLPNITERVLTLQLRKLEENKVIIRTIYPEVPPRVEYELTPIGLKLAPIIKALGKWGAEHKNLEEETKQV
>NZ_CP010817.1|WP_041891981.1|2164823_2165846_-|c-type-cytochrome
MKTITKITVLLLLLCFISCNKDEYEDIVIDNPEIELGIPTSFPEWNSAALKNKPTKYGVELGEKLFTDPRLSKDNTISCSSCHIQESAYADHHAQAIGIEGRVGLRNAPPIQNLLFMKYYNWDGSKLQLENQPIVPIITHEEMNSSIVEVLDKIGTDVEYKKLFKKAYGDESMTPERIYKSIAQYEYTLISADSKYDRVQLGQEEFTSQEAYGYKVFTQKCSSCHSGALFTDQSFRNIGFPINPDSNEAGRARVTGDLKDYMSFRVPSLRNIEYTAPYGSFGQFSSLKEVLDYFDRGVLDADNLDPIFKEANNRIALSEEEKEALIAFMSTLSDSKFIGK
>NZ_CP010817.1|WP_041891984.1|2165925_2166792_-|hypothetical-protein
MKNLTKSFLLFAASLAVVSCSNDDSNAVANNVTLEFTNTFKDKVIVLGDASSSSATVNKSAEGQEHQFSELKYVISNIRLIKNDGKEIPYHVNDLDKGATVVNQAKTETLNYLLTNIPRGEYKQIKFGLGVRNDLNVLNQIKFPLFYANAGANDTGMMWEWGTGYRFTKIEGFYDADKKQMSIHTGSTTEKDNDGNIVQGVDAYREVVLNLPTHAVVGSSAPTIKIKADFDKLLTGKSNTIKLSSGTSHNDNATPNVHTSLQMVKFVDNLGGNGTSDVTGMFSIISVK
>NZ_CP010817.1|WP_041891986.1|2166817_2168806_-|TonB-dependent-receptor
MKPFITILVLGVTTASVAQDNKGLQDSIPTVLDEISMLVQAKKRIETEMKMAVSVDEFLASSEQISFIKRGAYAWEPMLNNMSTERSTLTIDGMHIFGACTDKMDPVTSYVESNNLSTIDIKSGQEGGMHGATVAGSIDLKRKTTAFGIGQVWTGAYQSGFEFNNKQFFNLGNVSFSSEKLAGDASIAYREANNYKDGNNDEVKHSQYKKFNAALGLAYKTGGLSSLRADVIFDVAKDVGFPALPMDLWLSRALITSVSYKQLFEDKFIRVWDTKAYFNAIEHYMDDTTRPENLVHMDMPGWSTTYGLLSKANFKSGKYSSELQLNAYNNLSIAEMRMYPQDRSKQTMFAYSWPWVTTTYAGVSLNNTIEFSDDHRLNFGGSAGINYNYSKYIEFNWIFHPGSPQEKTRFLPSLHTSYEMDINRFNFSVGVGYGHRAPSVSEAYGYYIYNSYDRYDYIGNPNLKNEISNELNASVGYKGDKFSLQAKVNYFYIKNYVIGRILSLGSPMNYQSVGVKGYTSLDYATLFNFALNADYHIMDDLHWKGGVTYARGQDNEKGNLPFIRPFSYQTSLHYLFRDFSIQTSINGDAKQRDFSPEYGESLTPSYTVWNASVDYTFYIKNFKTVFQVGAENLLNEYYSTYADWGNIPRMGRNVFTSLKINF

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Crispr_ID: NZ_CP010817_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_10

2597430-2597652

Orphan

Consensus_repeat	Method
GTTGGCGCGGATTTGCAATCCGTGCCAT	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP010817_10

>merge|NZ_CP010817|10|2597430-2597652|PILER-CR
GTTGGCGCGGATTTGCAATCCGTGCCATATACATAACGTTGTGTGACAACAGAATGTGACACGCAAAATATTGACGTCTCTACTTTATATTTATTACGTAAATATACCTTTCGATACATTGCGTTGGCGCGGATTTGCAATCCGTGCCATGTATATCCACACAGAATATCACGTCACAGCAACCACAATACCTGCGTTGGCGCAGATTTGCAATCCGTGCCAT

>NZ_CP010817|10|1|2597430-2597652|PILER-CR
GTTGGCGCGGATTTGCAATCCGTGCCAT	ATACATAACGTTGTGTGACAACAGAATGTGACAC
GCAAAATATTGACGTCTCTACTTTATAT	TTATTACGTAAATATACCTTTCGATACATTGCGTTGGCGCGGATTTGCAATCCGTG
CCATGTATATCCACACAGAATATCACGT	CACAGCAACCACAATACCTGCGTTGGCGCAGATTTGCAATCCGTG
CCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041895451.1\|2596163_2596397_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041892737.1\|2612355_2613183_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378964
NZ_CP010817.1\|WP_041892727.1\|2607281_2607767_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP010817.1\|WP_041895448.1\|2595054_2595783_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP010817.1\|WP_041892707.1\|2589263_2590016_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041892733.1\|2611025_2611481_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041892723.1\|2600814_2605269_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041892729.1\|2607774_2609211_-\|multidrug-transporter-subunit-MdtD	unknown	unknown	gnl\|CDD\|182502
NZ_CP010817.1\|WP_041892719.1\|2596568_2597078_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041892717.1\|2592447_2594577_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP010817.1\|WP_041892721.1\|2597814_2600661_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041892714.1\|2591743_2592226_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041892712.1\|2591170_2591731_-\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|378155
NZ_CP010817.1\|WP_041892702.1\|2587877_2588186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238702
NZ_CP010817.1\|WP_041892705.1\|2588314_2589208_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NZ_CP010817.1\|WP_041892740.1\|2613513_2613753_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227786
NZ_CP010817.1\|WP_041892709.1\|2590116_2590977_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP010817.1\|WP_041892731.1\|2609637_2610312_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041892725.1\|2606059_2606998_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319246
NZ_CP010817.1\|WP_041892735.1\|2611545_2612265_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041892740.1\|2613513_2613753_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	4.48678e-07
NZ_CP010817.1\|WP_041895448.1\|2595054_2595783_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.31656e-07
NZ_CP010817.1\|WP_041892725.1\|2606059_2606998_-\|hypothetical-protein	gnl\|CDD\|319246	cd16387, ParB_N_Srx, ParB N-terminal domain and sulfiredoxin protein-related families. The ParB N-terminal domain/Sulfiredoxin (Srx) superfamily contains proteins with diverse activities. Many of the families are involved in segregation and competition between plasmids and chromosomes. Several families share similar activities with the N-terminal domain of ParB (Spo0J in Bacillus subtilis), a DNA-binding component of the prokaryotic parABS partitioning system. Also within this superfamily is sulfiredoxin (Srx; reactivator of oxidatively inactivated 2-cys peroxiredoxins), RepB N-terminal domain (plasmid segregation replication protein B like protein), nucleoid occlusion protein, KorB N-terminal domain partition protein of low copy number plasmid RK2, irbB (immunoglobulin-binding regulator that activates eib genes), N-terminal domain of sopB protein (promotes proper partitioning of F1 plasmid), fertility inhibition factors OSA and FiwA,DNA sulfur modification protein DndB, and a ParB-like toxin domain. Other activities includes a StrR (regulator in the streptomycin biosynthetic gene cluster), and a family containing a Pyrococcus furiosus nuclease and putative transcriptional regulators sbnI (Staphylococcus aureus siderophore biosynthetic gene cluster ). Nuclease activity has also been reported in Arabidopsis Srx.	7.03679e-06
NZ_CP010817.1\|WP_041892729.1\|2607774_2609211_-\|multidrug-transporter-subunit-MdtD	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	5.5652e-139
NZ_CP010817.1\|WP_041892717.1\|2592447_2594577_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	7.74206e-63
NZ_CP010817.1\|WP_041892727.1\|2607281_2607767_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.36297e-22
NZ_CP010817.1\|WP_041892712.1\|2591170_2591731_-\|SMI1/KNR4-family-protein	gnl\|CDD\|378155	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1). Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.	0.00241403
NZ_CP010817.1\|WP_041892702.1\|2587877_2588186_-\|hypothetical-protein	gnl\|CDD\|238702	cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.	0.00366502
NZ_CP010817.1\|WP_041892705.1\|2588314_2589208_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	5.21007e-19
NZ_CP010817.1\|WP_041892709.1\|2590116_2590977_-\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	2.13273e-41
NZ_CP010817.1\|WP_041892735.1\|2611545_2612265_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	6.72046e-101
NZ_CP010817.1\|WP_041892737.1\|2612355_2613183_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	2.12929e-23

>NZ_CP010817.1|WP_041892719.1|2596568_2597078_-|hypothetical-protein
MSLRSEIAPQMKVAEERYPIVLKAVSGYTDFCDEYGDEDFIEYKRVEGELHQLTGKDMSRYDLWEYWEGEGAEVLAFRIALPDPLVVKDISREEITEIVTILKVFDVSEETEEVTFEQQFTWYLDEYYYSFLKLNCAKYSYKLFMRNKNKQGEYFEYSIEETVNELMKK
>NZ_CP010817.1|WP_041895451.1|2596163_2596397_-|hypothetical-protein
MVNSTLQSEREELINSLLQVKDISLIRKIREILRHDEQLPAVMSVEELRKEVLLGVEEVRSGYGIKQKDFFEEMDKW
>NZ_CP010817.1|WP_041895448.1|2595054_2595783_-|CPBP-family-intramembrane-metalloprotease
MTIVILEALMQVGVLLPFMILFMKDRSKKDFMRIGIFCFVFVLYSCALMLGQVSESFRIINGSWNWSGKVYGTIWGVICYFAFRSYFKEHNFFRLKQAPGSQKGVWLVTVGIILLAVVAWWFAGSGGEWNIETLAFQLTMPGIDEEIMFRGILMGLLLSSLRMKVRYIGNLSNLIIAVLFGFVHAFALSKEYVVSFDTVYFVQTAFAGYVYGWIVIKSRSVLFPILAHNGSNFFGTLTMMIK
>NZ_CP010817.1|WP_041892717.1|2592447_2594577_+|TonB-dependent-receptor
MKHLFLIASLCCYTSLFAQSNDTLSNQKINEVVITTTQQQKGFSSKMPLTYIENPQSYDIIKYQTAKDQVATNIKDVLQNATGLVRVWESTGVGVTGGEYYTMRGFAFQPNLLNGMPSFTNNTLDIANIEQVEVVKGPNGTLYGGNVVSYGGLINVITKKPYEQLGGEVNYIGGSNNLNRVALDINTPINKKLFIRLNTAYHKQHAFQDAGYKESFFVAPSVQYNINEKLKLYVDFQYKANEGANTPMFFISRYMPVSFESLDLFEANYKKAYTSNELTLKNPTFTAQAKLEYKINNNWTSNTIINKNNAQSKGYDLLFEDIGTTDEFARYVSKIDSKTNIFSIQQNITGKYNIGSLDNTILFGLDYLSKEFSSIDGDYIEHGIISLINQSDTGDLSKTAIDNALSTSNYIHNKAKTQTFSSYVSNVTNILPNFSFMASLRFDYLEGSTSTVNDQKTSQTTLSPKFGLVYQPIQNKLALFANYLNGFVFLDPAIISDPDGTNKTIQPFDPEQANQFEIGAKTNLLGDKLSATISYYHIKVTNKLMTDLNSLNSFTQGGKVKSEGIELSLTGTPLPGWDIITGFSHNYNVVTKSLPADGNLGFRPEEAGPANLFHLWTNYKLQSGIFKNLSFGIGVNSVSEQKTINRSTLGVFTLPGYTIYNTAIGYDWKKFNAILKIDNLTNKKHFTGNSTVNPQGLRTVSLSLNYKIF
>NZ_CP010817.1|WP_041892714.1|2591743_2592226_-|hypothetical-protein
MEKESKVNVVLFDQAVELLSKEHELIKWPLTKTAEGNFIKNFGEEIGAFFISHSYRSGWRFGINTFDQVFHLHKVNFKKHNRDIYKQGYYIIGTGLHEDLIVLNLNTATLGYVSSEAFYRGEAEVDINVLFKDTGLDIGTFYYRSITEEDSFYRCAEDVR
>NZ_CP010817.1|WP_041892712.1|2591170_2591731_-|SMI1/KNR4-family-protein
MKLFEIEEVSVFLEKKFADVDKDIISELLLIPYKGSKEEVLRLKEYLNIAILPEEFEDFIMRYNLGNLTLANIQFGSGGNYINRLINLNNKDNYWYQDCLSIDAMVVGLGDPYTILLSLKEGVVYVVSSEISFDDKVIVAPSFDSFIQGLGTSVYVKESGKEESFLSLIENEFGVNTRFFWEEILY
>NZ_CP010817.1|WP_041892709.1|2590116_2590977_-|alpha/beta-hydrolase
MINIKALLVTGMLLLGVSGISQTNSKPLTFGTTDQLHSTILSEDRTINIVLPPDYNANDTIKYPVVYILDGGVEEDFIHLAGLVRFNSLPWIARFPNSIIVGIETINRRKDMTFAVDNLNFVEKAGFSKDMFPEYGRAEAYTAFLESELIPYIEKNYKGSSTRTVIGESLAGLYSTYVLEYHPYLFTNYIIISPSLWWGDEKLLDKTHTCLIEKIKQPVNVYVGVPNKEEDVKMYEYGEQLYKTLQKNKNIKSHFDYLSQEIHSTVIHQAVNNAFQKLYPNTYFSK
>NZ_CP010817.1|WP_041892707.1|2589263_2590016_-|hypothetical-protein
MVRYCFLVLFVLVASGNSMAQSYDKVYIEKKDVDVDNTIYKVGRTFYYSYKIQNKEGDSLFIDAKDAENLTSVKDEALPDQFKMEVIAPEKGKRTNKRQTEIRYSFEPMTDFRSSTGLVENEQNVWLHPIRSHFFKALETAPFPYVHLGKSVGYTWSDQMIIGDSWSNPVWGEWKGKLLLDYTYRIEKQEMVSTALGDLSCLKVVSTAKSTLGETELVSYFSEQYGFVKMEYKLLTGLKIVIDLVKVDGF
>NZ_CP010817.1|WP_041892705.1|2588314_2589208_-|AraC-family-transcriptional-regulator
MSNADQIHDYTIKDILRLLDQEYQDSGIYVDVQTSFTDNPLKHPYRNENYTLLFVTQGMITVQVNLIEYRLEPGTITIIPPQMVILFKEFSQDINFIAISFDRAFAIENTHTQNEKSTFVLLTPNTVTKLVLNQEQQTSLLSLCTLLNHKNIQKGKSANQKEAIKHLFALFLLELVDASHYNYKELKSNLSRKESLTIQFLELLQLHFKSEKLVRFYADRLCVSESYLAKVIKEITAKTIGELIDDAVIVEAQLLLANSTLSISEIAESLHFNTTSFFGKFFKRKVGYSPREYRKRV
>NZ_CP010817.1|WP_041892702.1|2587877_2588186_-|hypothetical-protein
MSKHYITCQKCKTENVNSDYCTNCGEIINVVLRRQMEQQRVVNERIQKEVNRELTSFEKFTRRMFKHPNPFIRVPAMIVNAIWVVGVSIMAGIAYLIGFIAA
>NZ_CP010817.1|WP_041892721.1|2597814_2600661_-|hypothetical-protein
MSKDIFYTELEEFVRKGNTRRLLLLLKETPLEERLKYTKKISKLGKYYQEYVPEEGNRNSYGYRGNSEQRSAVSVAVLACCTYKDFTGIWIISEEEFKQVLDWYVPDWLGDYINDSAREGWVRAPFNEIGYLYESYKKGVFKTPLTEATWATVMVNASKVELFDQYPELLEKEFWYLFDHEVNINYYSWDEVIATLIEQGRLDKQRIVQTAIQGALTHTNQALCGWNVNLLSKLSLADHEILSFQEDIFQLLNSSLSKVVNEALDILFKIAKDKAFHVEAFVNSLPILMSSTVKATINKAMRIVAVLDKAHPTYKEASAVAIVGALHIQDQAMQTKVAKQIVKYAQPNEEFAVQLEAYQEMMMSETKTLFSGYMSVQESVTLAEAVEEGEAELVPIQAIATVEDLIFHCSAWKTLESDYAFEQTIDAIIRLQGELKAEHIDQLLPAFDKVFKTFKDLWSTSTIQNAMAFWLLEWARMLIADPTIETTALDKLYHKYANAEIYTNSGITLGEVKLEASNRFSYYYAALRPYLTVYYYSLQLVKEKRIFPILSLPTHEPFYIDSRVLVDRLVAYQKEGELVDAVDLQIALARIDKNTEEAGLTLAQQQLKGELLAIFEFYLGNGEVKEESADYYDIWRAAAALKYPHQPLESLTNERYTKEQQEYCAGWLGNWEVIEESHTYKDWDHKTKTQIDKVFTHKKLKFEQIPYDINLSLIFSRINKAMPKTEVGDRMESANLMGLIMYQIRDTKVNLNESLLAINPRQLDPIYLAVVEKCLHYGGSATFEVAEKKLLQGMFTYLLQMNNVVFSEQFYLFFGLALICDDKVTRAFVAEYWIKEALRLDQQKVGHIIGKVEAKEYVTIKRLTDSIQGFMMNVSVQHNQALQLFIESILEQLGASPIKGLKTLLEQYVEVLHANNAKVTNPTVIALIEEWSKVSATKKIAVTLRSFN
>NZ_CP010817.1|WP_041892723.1|2600814_2605269_-|hypothetical-protein
MGEIITKTKRVIVNNINIKRIFSAFIDKHYAKVTKLKEPDETIGLHSLSPSILREPENSTSKIYVDGLFWGICNKDIKNIALMGSYGTGKSSIIKTLKSIKKDELPVHITVSLATFEVDEEVSTAITNEQISMNIVNQILYSKKKSDLSESRFKRIEYLSIIEKVCYSVILLFFVYSFCYIFLPEVNDQVAFLPHLGIFTDLFFRTIFISGLGILIWKSISFLINIRISKVSPTSIEISSKENTENINALDKYFDEILYFFQATKTKVVFIEDLDRFPNSLRVFTKLRELNFLLNQSEDLDGNITFIYAVKDDIISNHNNKTKFFDLIISIVPYINYSNSRDIFKKKILETDSTLGSSEELIDLVNLVSKYIEDTRTVLTIINDYLIMSQSLGMVLESENIIQSTEEDESAMDAESVATEEDKSDIEVVSVAIEEDKSDIEVESMATEEDKSDTEVESVATEEDKSDTEVESVVAEEDKPDIEVESVATEKMGLATKESIDKKIKFLAFVIYKTLYPQDFSLLLQRDGVLFSFFSSKPELLNKISKNDRDNLNELENDLAHLESNKNDSLKDLVELRRVFISGLLEYFDYNQEEVKKSFNISNLNDLLEKETFEEKFIDFNISYWNSYRFGNLKFSDIEKKINVNYQDRYDKIILLDEIKLKEGEIREIKKRIEECETLTVKDLYLTYGDVVSVYLKEKISLFTKNNQKNEQQDTGKVNLDKDKDKENYKVLALLLEEGYINESFIRYVSFNHGEGVLSIEDDKFLDKFDNNLNDFTYNVSNPKVLLQDLSKHHFKQFTILNQSLLQEIYGVNSKKYINYKFALMQAFSHYFHQIAKEFFKEDVQYLLGIWNDLIGYSVYNTILTNKELGQEEVVKLLNGLSNSSKDMLDKLKTDELFRKFICDENNNYLNKIDSDTFKKIVVGLDYIIQDCSLIEDNKKLGVVVKNNTYLFDVNNVEYLVSNVGDILDAYEAYSLTNVLDNDKNVMFRESYLKQANGKISENKYIKEYIERLEKNTDEIKESQDIVVNNLFMPEQGELTDNELDIVCSKVHFKIADITSLNWRNSFKLLLFKDRIKMSWSNLEDYFKRSNLKEFDESLVTFVQKNLDKESAISGFDSIDNDIFKYALVNSKVKDSIVLRVLEKSNFILKDLTRIVFDNKYLITEIIKLKKIDFSKDVYRQLDEEQRLLYLLCNVKNKEDVITLNLDYRLIISPLANICNNKYPYFSENYSEESKLVYTILTEHLITHYATDINFGDNEIAENVYKALEDNIDIETVEIDQYDYLLNNILSSGISKVTMKKFLEFFLSKTSDEKIEEYCKRDVEVAFNYLDILIDDRSLGLIHSVVKTIVDDNYKTVLTPTQIHELIRILNKCPLTGNVISSYDLKRFLENQLVDKNIDLNIKSDLILSLEKYMDNDDLIACLEFFDLPINDIKVKSSFVTKYIEEKKRLLYTLRLRLGIKTITGVKSEDEKDYQIKVEFNTED
>NZ_CP010817.1|WP_041892725.1|2606059_2606998_-|hypothetical-protein
MKYYWKDITDEHQQWKALELNVEGLTPPTMQLLSGSNWKMKLVCEDKPVMWGLISRDFCDIGLVRTFEEESRLIKNINSQEVEKRKELSTEERLKSWSRYFAEEMVSSDKHFFYDSIWLFEGYKDFASPPNYGTTVATEDDFDAFTYASWDRELLYSRQVDEYSGRLKWWRKKAIEGTLPPIFAWYIPSLGGYWIIDGNYRLRAAILEKKEIPVVLAYSGEYKEAIMNPDYQRGILHSLAKSEGKPVSPQTAASMNQHLAQAFDDRPYFQQKTVARVKIKSNEEWLSEVTDYLESIDYPDREKYINQLQDEL
>NZ_CP010817.1|WP_041892727.1|2607281_2607767_-|GNAT-family-N-acetyltransferase
MDRLYFRPLVIEDKEQLLYIYSDKDAMQYRGSKPLETIEEAENMVLQAHKEWDSRTKMRMAVIERDREVLIGTAMYFFESPTAVEIGFSIGRDFWKYGYGQEGTEGLMEYIKANEPEVTTIVGIARSGNEKSLKMMANIGFVEVSDYEVEGKRRFELMVNS
>NZ_CP010817.1|WP_041892729.1|2607774_2609211_-|multidrug-transporter-subunit-MdtD
MEIGIVEDPKVKKYLPWLAALAIFMQALDGTILNTGLPSIARSLGESPLEMQSVIVSYTLTVALLIPLSGWLADRFGTRNMLMLAIGIFTLGSLFCSIANTLDQLVLARIFQAIGGSMLVPVARLILIYAYPKDQLLGIINFITIPALIGPMLGPTAGGFLVEKFSWHWIFLINLPVGIVAMVWARKVVPNFTNTVGKFDLKGWLLISGGLTTITLIIERWNSPQFTAMTLMLLGVLTIICVLGYIRYAQRTTKALIRLSLLKIKTLRVGLIGNLVTRFGVGGMPLMVPLLLQVGFGYSAFFAGLMMIPQAGANLVFRNFVIPIVRKFGYRNTLIVNTILTGIIISCFFFINKNTPMWILVILMICNGAFNAVQFTSMNTIALADLDNDTSSEGNTLLSVTQQLAISLGISISAMILVMFQNSSIGTNDQGIDVFRYTFLVMGIITILSSRVFARLSVEAGASLVEKREYKEPKQQTN
>NZ_CP010817.1|WP_041892731.1|2609637_2610312_-|hypothetical-protein
MSWSAEQVYTIANTTVIERLQQIEELRQGLFNIDTLEKGIRSEWTKEIFFENEHHERKHIKHSLPQDGLFVINPSMSRTAYDDEHNAFYESYAEYKKNKWQFIEHIEIAPMVLSLNLTLEQCKLLAFLQQLNEETKQPFVYYKCEMWGGDIDEEIAVVFDGEIMVYYFDELTGEYKQMIGAEIKELEDTTALQKGLEAIGLVLPTHFFALHETSFDWYPYRIVL
>NZ_CP010817.1|WP_041892733.1|2611025_2611481_+|hypothetical-protein
MVQSQYSSRVMRLLLVLLVIALTLFTIFYFISDNAQAGHVSFKTHYSFLGGVTLGLVLFVFSFSLTMTMVKDITIKDNDILVRNLLGSRKKFYKPNTVCVLAHTKRVFLGATEYIVLQEGDKSTKIFEFSYKNFEEIKKHLNIDVEGKRRG
>NZ_CP010817.1|WP_041892735.1|2611545_2612265_+|VIT-family-protein
MSAKEDQITIDNYLDNHYINRSNWLRAAVLGANDGIISVSSLAIGVATASASREPILLATVAGLVAGALSMAAGEYVSVSSQTDIENADIAREAKELEEMPETELKILAQIYEQRGLKKETAMQVAIELTEKDALAAHVRDELGINEINQANPMQAALASGASFTIGGVLPLGVALLAPVEQMEYWLYGFTIIFLMILGAISAKTGGSSIQKAVLRIVIWGSVAMGLSALVGYIFGVNV
>NZ_CP010817.1|WP_041892737.1|2612355_2613183_-|helix-turn-helix-domain-containing-protein
MKIVGLETNKEIDFSIAVDNLTLTTPQKQDYYTLILCTRGHIDLKVGNHNFTVDEGSMSIISPEVIYLGGEASPDFRVFQIFFKKCFLYRNYVKEMIVDELLFLNADYPPVYKLGDSFKQVLQNFNNLAWELDTKRPYHLNIIRLKLIEILYDYNRACEYCLLGFHKGMNRQYQLTYTFKQHLEEKFKELKTVQQYADLMGITPKHLTEVIKEETGMTALQLIHERLLLEAQYLLRHSHMTVKECAYELGFDNISYFNRFFKLHIGDSPLGYRNK
>NZ_CP010817.1|WP_041892740.1|2613513_2613753_+|XRE-family-transcriptional-regulator
MPMKPIRTEEDYHMALVRLQLLKDAKPNTPEADEYEVINILLEHYERENAPMGMPDPIDSIKIFTEYFSDKEEDPDKEE

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Crispr_ID: NZ_CP010817_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_11

2923867-2924054

Orphan

Consensus_repeat	Method
CAATGTATTGNGNCTCTACAGAACATTNNN	CRT

3 spacers

csa3

The CRISPR arrays of NZ_CP010817_11

>merge|NZ_CP010817|11|2923867-2924054|CRT
CAATGTATTGCGTCTCTACAGAACATTACTTATATACACACTACACGTTAGATACAATGTATTGTACCTCTCTACAGAAGTTGATGGACATACTATACAGTAGACGCAATGTATTGCGTCTCTACAGAACATTACTTATATACACACTACACGTTAGACACAACGTATTGTGCCTCTACAGAACATTC

>NZ_CP010817|11|1|2923867-2924054|CRT
CAATGTATTGCGTCTCTACAGAACATTA	CTTATATACACACTACACGTTAGATACA
ATGTATTGTACCTCTCTACAGAAGTTGA	TGGACATACTATACAGTAGACG
CAATGTATTGCGTCTCTACAGAACATTA	CTTATATACACACTACACGTTAGACA
CAACGTATTGTGCCTCTACAGAACATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041893197.1\|2918165_2918963_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP010817.1\|WP_041893203.1\|2923214_2923736_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
NZ_CP010817.1\|WP_041893199.1\|2922196_2922682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041895500.1\|2921169_2922192_-\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NZ_CP010817.1\|WP_041893196.1\|2917253_2917820_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226426
NZ_CP010817.1\|WP_006258563.1\|2915778_2916111_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|137367
NZ_CP010817.1\|WP_041893201.1\|2922747_2923077_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP010817.1\|WP_041895503.1\|2936842_2937250_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP010817.1\|WP_006258575.1\|2925812_2926157_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041893210.1\|2932143_2932986_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP010817.1\|WP_041893211.1\|2933021_2934092_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP010817.1\|WP_041893214.1\|2934867_2935905_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP010817.1\|WP_006258565.1\|2916171_2916732_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP010817.1\|WP_041893206.1\|2926370_2930720_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|226220
NZ_CP010817.1\|WP_041893216.1\|2935963_2936704_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041893204.1\|2924154_2925555_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NZ_CP010817.1\|WP_041893213.1\|2934091_2934718_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|376491
NZ_CP010817.1\|WP_041893198.1\|2919079_2920489_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341066
NZ_CP010817.1\|WP_041893208.1\|2930730_2931942_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP010817.1\|WP_041893194.1\|2916754_2917276_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041893197.1\|2918165_2918963_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.39578e-16
NZ_CP010817.1\|WP_041893203.1\|2923214_2923736_-\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.8982e-05
NZ_CP010817.1\|WP_041895500.1\|2921169_2922192_-\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	2.59809e-144
NZ_CP010817.1\|WP_041893196.1\|2917253_2917820_-\|AAA-family-ATPase	gnl\|CDD\|226426	COG3911, COG3911, Predicted ATPase [General function prediction only].	2.06865e-46
NZ_CP010817.1\|WP_006258563.1\|2915778_2916111_-\|EamA-family-transporter	gnl\|CDD\|137367	PRK09541, emrE, EmrE family multidrug efflux SMR transporter.	7.59378e-34
NZ_CP010817.1\|WP_041893201.1\|2922747_2923077_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	4.43182e-18
NZ_CP010817.1\|WP_041895503.1\|2936842_2937250_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	9.44509e-46
NZ_CP010817.1\|WP_041893210.1\|2932143_2932986_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	3.23232e-92
NZ_CP010817.1\|WP_041893211.1\|2933021_2934092_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.34347e-87
NZ_CP010817.1\|WP_041893214.1\|2934867_2935905_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.55626e-12
NZ_CP010817.1\|WP_006258565.1\|2916171_2916732_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	5.8457e-13
NZ_CP010817.1\|WP_041893206.1\|2926370_2930720_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_CP010817.1\|WP_041893204.1\|2924154_2925555_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NZ_CP010817.1\|WP_041893213.1\|2934091_2934718_+\|YigZ-family-protein	gnl\|CDD\|376491	pfam01205, UPF0029, Uncharacterized protein family UPF0029.	1.08682e-51
NZ_CP010817.1\|WP_041893198.1\|2919079_2920489_-\|hypothetical-protein	gnl\|CDD\|341066	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	5.75223e-07
NZ_CP010817.1\|WP_041893208.1\|2930730_2931942_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	6.47338e-42
NZ_CP010817.1\|WP_041893194.1\|2916754_2917276_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.79745e-28

>NZ_CP010817.1|WP_041893203.1|2923214_2923736_-|hypothetical-protein
MDKNNKIYRSPSNRAQWWDYSNNGTYFITICTKNRINYFGTILQGETILNSLGQSVLRCWNDIPIYHPYVILDTFIIMPNHIHGILHINNINTFDNNCALKKECKVTSSSLGSIVRGFKVGVKKEAYRLNIPFFWQPRYHDHIIRTAESYIKIANYIIMNPITWEQDKFYNDL
>NZ_CP010817.1|WP_041893201.1|2922747_2923077_-|winged-helix-turn-helix-transcriptional-regulator
MGITKAELFSEKKNRLASMFKVLAHPARLAILQYIINQKACICNDLVEELGLAQATISQHLKELKNSGLIKGSIEGKSVCYCIDDNVWNEFAQEFGLFFAQSIQNNECC
>NZ_CP010817.1|WP_041893199.1|2922196_2922682_-|hypothetical-protein
MKLSEVKQVLATMQDVVFKLEDGNSVPSHFHITEVGQIDKNFIDCGGTVRKEQKVSFQLWLADDYDHQLKAEKLLQIINLSERLLQIQDAEVEVEYQQATIGKYNLGFDTTNKHFVLQNTLTACLAEDACGIPVSKPKVALSSLKVESCCSPSSGCCSDEK
>NZ_CP010817.1|WP_041895500.1|2921169_2922192_-|ACR3-family-arsenite-efflux-transporter
MKFLDRYLTLWIFLAMILGVGVGYFFPRIQDLMASVSIGSTNIPLAIGLIVMMYPPLAKVDYNLLPKVFEDKKALTSSLLLNWVIGPVLMFVLAIIFLRDQPDYMIGVILIGLARCIAMVLVWNDLAKGNKEYAAMLVALNSVFQVLFYSVYVWLFINVLPAKLGLAAYDVHIEISEVIQSVLIYLGIPFLAGFLSRKYLVKYKGEQWYNHRFIPRISPFTLYALLFTILLMFSFKGQQVVELPMEVIQVGIPLVIYFVLMFVISFWLNYRMKLPYDHNAAIAFTASGNNFELAIAIAIAVFGIHSPQAFVGVIGPLVEVPVLIALVRLSLYWQKKYYQK
>NZ_CP010817.1|WP_041893198.1|2919079_2920489_-|hypothetical-protein
MKKAYLLVLIFLTSMYLFAQENAPLITGKVNISIKEGTFECDLTLSDIPQLKNYYIRLNSGMNPLHFRSKEPNDFLIYADKSVTDSTSTGETLAYYFADNTKSGKFLPKSLQIRYVGKFPVATDTIENYSREDWRGNIAFNNYSVRADGNQSGWYPVLYDIDKDVVYDRVKYDIELICKDCTTLYVNGNIPVNGQAHRFKSDVPQELAIFSGDYKYLKVDNTYLLNPDIAESQIKEFGHLIESFKKYYTTNIGIPFEQETVFINTTPTSKNDAWMFVAYPSIYTIGWGDNGLKSIFNPKIQNWFRPFIAHELGHYYFGTYKVFNAELGDMMSEGFAEYLSWQLTKDVLGKDVYKGIVSRKIEALDKFKEVVIPFGKIKSQEEYLDRELYVYSYAPLLFEAIRKEIGDKQMWSWLRNILMTKTDFTNYDFLCSTLKDTIKDDKKFEEIKTKYFEGKNSINNAVDVIKKEL
>NZ_CP010817.1|WP_041893197.1|2918165_2918963_-|class-I-SAM-dependent-methyltransferase
MDTNNNYIEINKKTWNEKVALHVDSEFYNMKDFLAGETSLNEIELNLLGDVRGKKILHLQCHFGQDTLSLARMGADVTGVDLSDKAVEKGSELAQQLGLDARFICSDVYKLPEVLEEQFDIVYTSYGVIGWLPDMNKWAEVVSKFVKPGGKFVFVEFHPLIWMYDYDFTKIEYSYFNIEPIVETETGTYADKTADAEFGSVSWNHSIADVVQGLVNNQLQINTFEEHNYSPYPCFNQVVEIAPKKYQIKPFGDKAPLVYAIVARK
>NZ_CP010817.1|WP_041893196.1|2917253_2917820_-|AAA-family-ATPase
MNIPRFYIFTGGPGSGKTTLLHALEVQGYTVMPEVGRAIIQREQALGSDVLPWENKQLFCEAMLSQSIYDYEHCITDEVILWDRGILDSIGYAVLEGLDISEAQHSIASSLPYMPTVFILPPWEEIYTQDKERKQDMEVARATYETMKTTYQRYGYNLIEVPKGTVDERVTFVMNQLKKEENERNNRD
>NZ_CP010817.1|WP_041893194.1|2916754_2917276_-|GNAT-family-N-acetyltransferase
MKEIIETDRVIIRPLEEGDVEGILALDGDIRVLEFLGKKPIGTKEEALGVIRFIRQQYEDFGIGRWAVIEKETNTFIGWTGFKYLKDGPSGVAEYLDLGYRFIYEAWGKGYATEAAEACLVYADKYLTTLPIHASSEVGNDGSRHVLEKVGFKVVDTFLDEGVPNFWYIRLKK
>NZ_CP010817.1|WP_006258565.1|2916171_2916732_-|Crp/Fnr-family-transcriptional-regulator
MNMLIRLFEQYGYLSPMCKEALEKNTQIFYKRKGEYLLKKGQLSGSLYVLEEGFVRGFYMHNDQEIDVWFAFEQTIMGSTYQMYKSKASLEFIQCMEDCVVHAIPNQVIFRFFKEYPELNLILRRSTEDYCLQLEDRAFQLQTMSATERYHRLLKDLGSDVNRIPLGNIASYLGISQETLSRIRRI
>NZ_CP010817.1|WP_006258563.1|2915778_2916111_-|EamA-family-transporter
MKNFIFLAVAIVCEVIGTSALKASEQFSKLGASVLTVLMYAAAFYCLSQTLRTIPVGIAYAIWSGVGIVLVTLIAIVLYNQKPDVPAVLGLGLIIAGVVVINVFSKMSAH
>NZ_CP010817.1|WP_041893204.1|2924154_2925555_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MSTQIKSSIKTINPTTGKEEKVYPVMSPEEIDRILAKADKTFLTWGKTTIKERAAIIHKVAETFRARKEELGALITREMGKLHSEGIGEVLLCADIFDFYATNAETLLADEKIKTPHGEAFISKEPIGTILSVQPWNFPFYQITRSAAPNLMAGNTMVLKHASNIPQCAEIMEVIFKECGLPDGVYTNLFVPGTSIEAIIGDPRVKAVAFTGSEPAGSSVAAAAGKYIKKTTLELGGSDAFVVLDDADLKKAIKGAVEGRLWNAGQVCVSPKRLIVDKKLAKAFIEGVTEQVKQTKVGDPMSADTQLAPLSSEKAREDVLKQVKKAVEQGAKLVYGGNKLGREGWFMEPTILTGIKKGMDAYSEEIFGPVFMIYEVENEAEAIALANDTDYGLGGSVFTENKERGVKVARQIATGMVYINHVTGISPELPFGGTKKSGYGREQAKYGIHEFVNEKLIRVTDIDKAY
>NZ_CP010817.1|WP_006258575.1|2925812_2926157_+|hypothetical-protein
MKQFNNILNLFLSLVFLAISFYPCADSYVDLNITQSTESIHLTSLQQADSDIDHLDVCSPLCSCSCCAVSLTVAEVINVIDLSSVKHNHKIPSYHKDAVIRMEYPIWQPPKIVA
>NZ_CP010817.1|WP_041893206.1|2926370_2930720_+|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MLDKIIHFSIRNKFIIGLFVLGLITLGTYSLLNLPMDTQPDITNNQVQIITSSPTLATQEVEQFITYPIEQAVKPIPNIKELRSISRFGLSVITVVFTEDTDIYWARNQISEKLKTAEEVIPKGVGTPELAPVSTGLGEIYQYVVYPKDGYEERYNSMDLRTIQDWIIKPQLVGVKGVAEVNTLGGQLKQYEIAVKPDLLNSMNTSILEIFNALEANNENTGGAYIDKKPYAYFIRSVGMVKSIEDIERIVVKSNNGTPVLVRDVAEVRIGSSIRYGAVTKDGKGEDVSGMVMMLKDANTQEVVKAVKERITQIEKTLPEGVAIEPFIDRTKLIDKTVSTIQTNLIEGALIVVFVLVLLLGNWRAGLIVASVIPLALLFAISMMKLFGVSGNLMSLGAIDFGLIVDGAVIIVEAIVHRLHAGKNRVLTQDEMNTEVYTASSKIRTSASFGEIIILIVYLPILALTGIEGKMFGPMAMTVSFAILGAFILSLTYVPMASSLFLSKKAGKEKPNFSDKIIDKLYSWYKPLLEGAFKIKRIVLAIAFGLFAIALFVFGRMGGEFIPTLDEGDLATHIIISSGSSLSQEIETTTKAEQILMERFPEVKMVISKIGSAEIPTDPMPMEAADMIIILKEKKEWTSAKTKEELISLMEEALEEIPGVTTEFSQPIQMRFNELMTGVRSDVAIKVFGDDLDRLASIGDEISGLISGVPGVASTKLERVSGLPQISIKYNQDKLALYGLTISEISQVVRAGFAGETAGVVYEGEKRFDLVVRLESNSRQDIENLRNMFIPLANGQQIPLGQIANIDFEDGPQQISREDGKRRIVLGFNVRERDVKSVVNDIQAILDKKLDMPDGYFITYGGQFENLVEATNRLMVAVPVALALIFVLLYFTFKSVKQSLMIFTAIPLSAIGGVAALWLRDMPFSISAGVGFIALFGVAVLNGIVLIGQFNSLKKEGMDLYERIIEGTKIRLRPVLLTAAVASLGFLPMALSTSAGAEVQKPLATVVIGGLISATILTLIVLPIIYYYEEKGLGIGKKNKAIVVSTLLLLMGIGTQAQEAKKLTLQEALELSVANNKGIKAAEYNTIAQKQMIGTYFDLAKTDISTGFGYLDTKEKKDITLSISQSFSPFTYGKKKSVLNKAYETAVIQQQGAVNVTEYAVRQAWENLLYALSKEVLLKEQADLLKDFSKSAKLRYETGETTLMESNVASAKEQELRVLITQNKTGIDNETSKLKALLNLEEDFIPMNTDIVYDKHEADADFDLSLNNTIQLAEKEIETIEANRKLEKANFLPDFSLGYNIKSDSGTVTGSNGLPITYGKELRVPSYTVGISIPIFFSSQNAKVKAMKYEIQQATLQKEYLHKQLEENVQQQFDIIKAQEKVIDYYQENALKNAALIKDHAKKSYNNGDISYVEYIQSVETALAIQMNYLDAILQYNLSHNTLHYLVNQ
>NZ_CP010817.1|WP_041893208.1|2930730_2931942_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKSIIFLSIATSILFFSCKNAEEDHSGHDHENEKTESTTKTEAKEESANKEVELNQAQYTASNIQLGQIQQKNLSDVIRVNGNTELPAQSQADVSSFLSGTITNINVNLGDYVKKGQTIATIDSPEYIQLQEEYLVSKNTLEYLELEYKRQQTLRAENVNSEKTFQKTKSDLNIERARYQSLSNRLSLVNTAPGSISKSLRIVSPISGNIATIPVKIGTNVMAGQSLFTIVDNSRIHLDLLVYEKDMPFIKIGQKVSFNFTNINNSEVTATIFSINKSFEPGTKTVIVHANIDNVPETLIPGLYVNALVHIGEKTVDALPNDAIVKADGREFIFILEEAHKEESGMSYHFQRIEVKTGVSELGYSQVTVLQDIPKDSQIVLSGAYYIQSHLIKNEGGGGHSH
>NZ_CP010817.1|WP_041893210.1|2932143_2932986_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MQIKYYQSCFKESLTPVYDAVEAEQLFLIALEEIEGKTRIDLVMNPTMQTDKVAVWESVLEELKQEKPIQYIFGQAYFYGLIFKVNEFTLIPRAETEELVEWIINSVNPSKPVRILDIGTGSGCIGITLANELPLARVTLMDVSDKALEVAKQNAVSNGVAVETVLQDVLQLENLKSQYDIIVSNPPYVRNLEKVEIKKNVLDYEPHLALFVEDNDPLIFYRKIAHLANNNLQTGGMLFYEINQYLGEETKTLFESLDFTAVELRKDMVGNDRMIKAIKR
>NZ_CP010817.1|WP_041893211.1|2933021_2934092_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MFKDTLLSILERHELYISRCIQLALQGTYAAMPNPSVGAVVVHNNRIIGEGFTSPYGGPHAEPNAIASVQNQELLKESTLYVSLEPCSHFGKTPPCCDLVIEKKIPKVVIGTVDPFAKVCGRGIQKMRDAGIEVIVGVLEKECQESNKRFFTFHNQKRPYIILKWAESIDHFIAPIQRTTNRPFWISNTYSKQLVHQWRSEEMAFLVGTQTVLSDNPSLTTRDWYGKSPIRVFIDRVGKIDNSFSIKDNSVKTICITAKQDLLSTDNLIYEYADFNQPLVPQILDILYRHQIMSVVVEGGSHTLQHFIDAELWDEARVFIGNTPIVEGIPAPHLSGFDKVVKHRILDNELRKVYRK
>NZ_CP010817.1|WP_041893213.1|2934091_2934718_+|YigZ-family-protein
MAEALDSYKTISRPTEEVLYKEKNSKFFGYAFPIQREEEVKEIIDRIKKEHYNARHWCYAFQLGAEQVYYRANDDGEPSNTAGAPIYGQIQSYDVTDILIVVVRYFGGIKLGVGGLITAYRAAAQMAMEEADIIEKTIDKKFKVRFEYKDMNNVMRVIKEKDLNILSQKMEMSCEIELSIRKNEYEQALAAFVPFYEVKVVEETDEAY
>NZ_CP010817.1|WP_041893214.1|2934867_2935905_+|prolyl-oligopeptidase-family-serine-peptidase
MRWKILATIFSIFLVIFLYFFFLGSQDFDDTTIKQKEVIFTSQGEELSATLFLPKKEFFKTAPVAIFIHGDGPQNKTSNSGYLPLIHHLVDQGIAVFTWDKKGVDKSKGNWLNQSITDRAVEAKDAFDFLVNDKGVSPNRIGYLGFSQGGWVIPKAAILTKPAFSVIIGGAVNWMDQGYYYTTKRLKEEGYSEQEIKQKADSIQQADYKLFTDFNDCTIKESEIEKDRFLFIARNFKADASVDLQNMQGPLLALWGSDDLNVPADKNAQLYQQYTSKRKSDTTTIKVYPRSTHGLLNAKLFNYQLDAQWPKWKKWLFVFQGRKAYSTNTLFDISNFILIANKKTE
>NZ_CP010817.1|WP_041893216.1|2935963_2936704_-|hypothetical-protein
MKPVYWLMSLGTLLSIGTYAQEPKLLDGRVRLYDGNVVPVTIENKRSKEVTKADGRGYFIMDAAIGDTIRFSDKKLASVNYIIGKEDLKASRFNVLMTKKGQSLDEIIIVRKDFGDDFFEGVPNKNLTAAEKRYKKNNTVFSSTSNYGMGISLDALVNMLSGQKKRDKQAILYEKLDIKVQQFLEDYTREELLEDFKIPQERLEAFLYYVVAQPSFERMKVERTEGFKLYLAQEYIDFLGFMDLEE
>NZ_CP010817.1|WP_041895503.1|2936842_2937250_-|acyl-CoA-thioesterase
MKYFDYKVRVRYAETDKMGVVYHGNYAQYFEIGRVEWLRNLGISYKKMEELGVMLPVVSLTMNYKKSAFYDDDLTIRTIFKKLSSVKIEFDYELYNEKGDLLTTGNSVLVFVNMETGRPMAAPDYVVNKINAIQE

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Crispr_ID: NZ_CP010817_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010817_12

2993280-2993461

Unclear

Consensus_repeat	Method
CGTCCCTACGGTTGTGTGCTGATAGAACGTGATATA	CRISPRCasFinder

2 spacers

cas3

The CRISPR arrays of NZ_CP010817_12

>merge|NZ_CP010817|12|2993280-2993461|CRISPRCasFinder
CGTCCCTACGGTTGTGTGCTGATAGAACGTGATATACATACTAAATGACGTAGCCAAAAATTCCTAATTCTTAATATACGTCCCTACGATTGTGTGCTGATAGAACGTGATATATATTGTGGTTACGTTGTCAGACGTATGTAATACGTCCCTACGGTTGGATGTCGACAGAACGTGATATA

>NZ_CP010817|12|10|2993280-2993461|CRISPRCasFinder
CGTCCCTACGGTTGTGTGCTGATAGAACGTGATATA	CATACTAAATGACGTAGCCAAAAATTCCTAATTCTTAATATA
CGTCCCTACGATTGTGTGCTGATAGAACGTGATATA	TATTGTGGTTACGTTGTCAGACGTATGTAATA
CGTCCCTACGGTTGGATGTCGACAGAACGTGATATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010817.1\|WP_041893261.1\|2998837_3000745_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041893269.1\|3006030_3006711_-\|DUF4433-domain-containing-protein	unknown	unknown	gnl\|CDD\|373093
NZ_CP010817.1\|WP_041893239.1\|2983338_2984067_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|378940
NZ_CP010817.1\|WP_041893272.1\|3006713_3008222_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP010817.1\|WP_041893247.1\|2988741_2990052_+\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP010817.1\|WP_041893245.1\|2986822_2988502_+\|peptidase-S41	unknown	unknown	gnl\|CDD\|143475
NZ_CP010817.1\|WP_041893241.1\|2984091_2984952_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|376615
NZ_CP010817.1\|WP_041893265.1\|3001348_3004309_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_CP010817.1\|WP_041893233.1\|2959590_2961069_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173888
NZ_CP010817.1\|WP_041893263.1\|3000741_3001362_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041893266.1\|3004492_3006031_-\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NZ_CP010817.1\|WP_041893243.1\|2986076_2986808_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|372635
NZ_CP010817.1\|WP_041893253.1\|2993567_2994809_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|176459
NZ_CP010817.1\|WP_041893234.1\|2969019_2970510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173888
NZ_CP010817.1\|WP_006264282.1\|2995949_2997014_-\|2,3-butanediol-dehydrogenase	unknown	unknown	gnl\|CDD\|176195
NZ_CP010817.1\|WP_006258618.1\|2994809_2995577_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP010817.1\|WP_082027833.1\|2961123_2968677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010817.1\|WP_041893250.1\|2990107_2993164_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
NZ_CP010817.1\|WP_041893259.1\|2997719_2998148_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP010817.1\|WP_041893237.1\|2981412_2982966_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010817.1\|WP_041893239.1\|2983338_2984067_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|378940	pfam12746, GNAT_acetyltran, GNAT acetyltransferase. Many of the members are annotated s being Zwittermicin A resistance proteins, whereas others are listed as being GNAT acetyltransferases. The family has similarities to the GNAT acetyltransferase family.	6.12445e-09
NZ_CP010817.1\|WP_041893272.1\|3006713_3008222_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	4.71385e-24
NZ_CP010817.1\|WP_041893247.1\|2988741_2990052_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	3.77164e-82
NZ_CP010817.1\|WP_041893245.1\|2986822_2988502_+\|peptidase-S41	gnl\|CDD\|143475	cd06567, Peptidase_S41, C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn protease (TRI) act as a carboxypeptidase, involved in the degradation of proteasomal products. CTPase homolog IRBP, secreted by photoreceptors into the interphotoreceptor matrix, having arisen in the early evolution of the vertebrate eye, promotes the release of all-trans retinol from photoreceptors and facilitates its delivery to the retinal pigment epithelium.	3.25959e-20
NZ_CP010817.1\|WP_006258618.1\|2994809_2995577_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	5.975e-12
NZ_CP010817.1\|WP_041893233.1\|2959590_2961069_-\|hypothetical-protein	gnl\|CDD\|173888	cd06900, lectin_VcfQ, VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.	0.00208563
NZ_CP010817.1\|WP_041893259.1\|2997719_2998148_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.44986e-13
NZ_CP010817.1\|WP_041893266.1\|3004492_3006031_-\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	4.13303e-35
NZ_CP010817.1\|WP_041893243.1\|2986076_2986808_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	4.71193e-05
NZ_CP010817.1\|WP_041893253.1\|2993567_2994809_-\|DNA-polymerase-IV	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	3.19761e-115
NZ_CP010817.1\|WP_041893234.1\|2969019_2970510_-\|hypothetical-protein	gnl\|CDD\|173888	cd06900, lectin_VcfQ, VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.	1.63652e-09
NZ_CP010817.1\|WP_006264282.1\|2995949_2997014_-\|2,3-butanediol-dehydrogenase	gnl\|CDD\|176195	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.	3.50489e-164
NZ_CP010817.1\|WP_041893269.1\|3006030_3006711_-\|DUF4433-domain-containing-protein	gnl\|CDD\|373093	pfam14487, DUF4433, Domain of unknown function (DUF4433). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 201 and 230 amino acids in length. There is a single completely conserved residue E that may be functionally important. This family is distantly similar to pfam01885 suggesting these may be ADP-ribosylases.	4.05072e-10
NZ_CP010817.1\|WP_041893250.1\|2990107_2993164_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
NZ_CP010817.1\|WP_041893241.1\|2984091_2984952_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|376615	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.	3.85038e-77
NZ_CP010817.1\|WP_041893265.1\|3001348_3004309_+\|AAA-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.51435e-16

>NZ_CP010817.1|WP_041893250.1|2990107_2993164_-|DNA-polymerase-III-subunit-alpha
MLLNCHSYYSLRYGTIPIQRLVQLGKQYHISTMALTDINNLSGVYEFITACKEAAIKPIVGTEIRTEDVLHYILIAKNQEGFSEIGQFLTDINEGIITVSSIAPDFQNCFVIYPFSTVVPTLKEWEYIGVQNNQLSLLYAEKWRSLMDKLVVLHTVNHLNEEEYKLHCILRAIDKNTLLSKLTEKDCASPQDSFKSEEQIIADFKDYPELIENTQRLMSECNYSFSFKVPRNKKHYTEDKVSDLNLLKQLAYEGMVKIYGEDHTFAQERLAKELSVIDQLNFEGYFLITWDIIQYSNSQGYMHIGRGSGANSIVGYCLGITNVCPLELDLYFERFLNQNRKSPPDFDIDWSWNQRDDILQYIFTRYGKEHVAFCGAVSTFKYRSIIREIGKVYGLSKSELDTLTRNPIEDHEANSIVLLIHQYGQLLEGFPNQRTMHACGILISEDPITRYTALDFPPKGFPVVQFDMHTAEDIGFDKFDILSQRGIGHIDEATKLILQNQGIEVDIRNIALSKDEELCNQQLKIGNTIGCFYIESPAMRGLLRRLQCDNYKILVAASSIIRPGVAQSGMMQEYIYRHNHPNQFEYFHPVFKEQLGETYGIMVYQEDVIKIALHYGGLPAADGDILRRAMSGKSRSLAGLQAVKDRFFEHCDLKGHPRALSEEIYRQIESFAGYSFCKAHSASYAIESYQSLYLKTYYPLEFITAVINNEGGFYRTEVYIHEAAMSGAHVLPPCINSSELQTTLIGKELFLGLKLIEGLNIELLKAILKERKVSGRYESLYDFIQRISIAMDSLQKLIFIGAFQSFGKQKNELLIQAKLLLSKKEPTPTLTLLQEPIQEYTFPTLTRSVYEDAFDELELLGFPISCMPFDLLKTKFRGDVMVCDLLHHHKKTVRMLGYLIARKHVPTSKGSMYFGTWIDANGHYFDTVHFPDSLEEYPFVGGGCYLLLGTVEVEYHFPNVQILKMARLPFMTDPRYHYEDEHHQTTASKVKEDVSLTHRQPYPKASEINLPRHRMKFK
>NZ_CP010817.1|WP_041893247.1|2988741_2990052_+|DEAD/DEAH-box-helicase
MNKAEILKNLNIEALNEMQTKAFSAAQKNPNIILLSPTGSGKTVAFLMPLLERLDPAIRGVQAVILVPTRELALQIETVFKKMGTPFKINSCYGGHSTKTEIKNFSTPPAVLVGTPGRVAFHIEEFSFNTETVTSYVVDEFDKALEMGFQTDMDYIINSFDNISFRMLTSATALKKIPEFTGIVDPERIHFLKKTEVIPDLTFSQVISTAEEKLETVIKLIGKIGKDTILIFCNHRDAVARISETLTKKGVANSAFHGGMLQEDRERAIMKFRNKSAHILIATDLAARGLDIPEIGHVIHYQIPQKEDAFIHRNGRTARMKASGKAYVMITKEENIEFINPDMPIEDLDGSYTIDNKTDFKTIYISAGKKDKINKGDIVGYLIKTGGLTKEDIGVIDVRDTQAFVAVNTKKVKALLTALVDTRLKNKRVKIEIARD
>NZ_CP010817.1|WP_041893245.1|2986822_2988502_+|peptidase-S41
MKRVKHKITILGLSILSLSSLTVLNSCSADDITITDPRRFTAEDVKSYADLFEVFWKTMDQQYNYFYEQKEQGGLDWDGIYKTYYPKFAALQTYGRPNEDDGQIHEDYLTASQYFKEIMHPLIDRHFSVKIQFPATSKNIIRTATFYGGMLDEEIPNVYPFAQKYGYMEDRVNSDAFKSIAGTFGILAGNLNTNPDIYYLSFSQFAVTNNLKITLANNYLNPGKGNALLLTESILEASKELKGIKNANMRNAIKNVTFNILKDYNTYSDSKAYKAFMEEVTKFNQTEVVSNEFMLSAQNALRAYNALPKYTTITPYGALYNAETADYINLFVGLFDNHVKYGYNFPELTGALTQVLTRGEFYQKFLNPLHTGEIKKIIIDLRSNGGGAVVDARFISDRFITKNAVFAYQRTREGNGRFNYTPWVEAKTKPHNFGIPANIPIAVLTDKGSASMSEITTLMLKSQGNHVVSIGDYSAGATAGLGAVDDFNGGTRDEIAGGKLTFYMPLLAMKDAEGVVVEGVGVKPNIYVTPPTDSEVAQMTSPTFVDRVLNEAINYLNSK
>NZ_CP010817.1|WP_041893243.1|2986076_2986808_+|outer-membrane-beta-barrel-protein
MISTKLGSLTAIFLSMFSMSLHAQTEQKENRFKVGVDLGYTNTSLNANISNLVDSKYNSRGGFGVNISAEMAVWKNIFVSTGVSYLQRNYEFERTGSREGWYSKYSNDFISVPLLVGGYLINNPYNTNGVWVKAAGGIYTEYWAKMKTKGQYPVFSELQPDGSFNYTTVSENYDFKKNENQLRRLSMGLQGQVQVGYAIDKIDVYLGYNYLYGLTETYKYDSPGNKKNTRDSHMISIGAAYKF
>NZ_CP010817.1|WP_041893241.1|2984091_2984952_-|prolipoprotein-diacylglyceryl-transferase
MSLAAVLWDANPEMIKIGAVPVRYYGVLFALGIILGYKIVSCVFQKERIPQAYLDKLLLYIIVGTVLGARLGHCLFYEFDYYMQHPLEIIIPFAKVDGVYDYVGFMGLASHGGAIGVLLAIYLYCRKYKIGAFWILDRIALGVPIAGAFIRFGNFMNSEIYGKPTSGSWGVIFAHDDMIPRHPTQLYEAFGYILTGVILWFLYRSQKARNNGVIFSYFLILMFLTRFVLEFFKENQVAFEQDMMLNMGQWLSVPFILIGVLMLVFQDKLRGISHYDARALIGTTIK
>NZ_CP010817.1|WP_041893239.1|2983338_2984067_-|GNAT-family-N-acetyltransferase
MGEFVEEVHAYWRSQMVQGSIIHLDEVFTLVSNPALDELYKVMILEMTNKHTMAVVTPMVAEALKLRELEEYSIHTLREAISTCKLELHSPDYIYYLLDNKVPQLSDIKDGIVIRALSIETDKEAFRQFESVCSEEDLDGAYVSLKHWIVYGAFDGDRLVGAVSVYPWEETKLADIGVITDDAYRGRGIATCLVQAICLEVIDRGHVPQYRCQTDNDTSIALAKAIGFTLFGQWEAIVADEE
>NZ_CP010817.1|WP_041893237.1|2981412_2982966_-|hypothetical-protein
MKKKLLFVGVAFMALSTMQAQEGIGIGKSIIPDGAAVLDVGSDTKGVLIPRVFLTGEKDITTIKGGIYPESLLVYHKAKLPTDVLKSGFYFWDGTLWRALMSKSSEHLSETLTKLAVKQEAGETVLVYKAEDGKDTEIKISKELQSSTNFETWVKDLVTSAATKVKVEGGTGIKVDEAPPVNGLITYTINADPSGITLGGDVSGKADSTSVDKIKGVEVTKANPATDKDLALVYDGIKWAPGKPKVDGDDITDKKELKVLDGISITNGTASVLNDVTIGIGNNSVMPIKISTEDKANQVLVTSDDGKKVEWVPQSKITPTKADLITDGIIVVGDATTGTQLATGALLEGVNLSIKKESIDNDKIAPSTLTIDKLATVIEKKNMHLVTDINGKPQWETLKSNDIKITTKPIATNETVEGQRVYTVRIINGEVETPPGTSLTYNSEIKAIPLSNIDYLLTAHIYDSSNKLLINGVTDVTNSKNTSVKFRFGSGNFYNTLPVAKNYIVVLKYVSTEIVTP
>NZ_CP010817.1|WP_041893234.1|2969019_2970510_-|hypothetical-protein
MNNKIAIIIACLLTSFTWAQQARTFPYFLDLTGTEKPDEITEYFGDGIFEKSERYSKDGLALTFKTSDGKTQEFSGFALDAIPFTSEFGIIVEFTYAMIDGEKYIGRYGDGMTMFLYDSTKDFEIGGHGASLGYTYRNIIDGNYTPGLNGGYLAVGLDVYGDFKARSVAAYEKKEGIAKYDWPESGSHVTVRGGQFGNDRYKGYPVLYTINANYKANTNRAKLKYDTGEYDYHDEQFFTKFEMYTGFDSRGNINYNKVKVIVYPEENKKGSYVEVWVTEYINEGRVVERFFYPNEFKTKDQEGNLYDFKTKIPNNFKIGFAAATGGAYEKHLVKNVRVSLPFEPEMIDLLKNMCVGGTKGKTVHFDPYSESTFYSGPVIDPFRGNDEEMIDFNSFRFENEDGYALNSNNNFKYTDNGVGVWEYDSSKGKVTFTATENLEKGEYSIYFSAKGFSNGTYGPGPFGEEAYRSRPTKLTVKVDGCNIFFNPNQPIKVRVK
>NZ_CP010817.1|WP_082027833.1|2961123_2968677_-|hypothetical-protein
MKKKVITIGMLMMAGVVFSQVGIGIKAPHKSALLELKASEGEYRGVLIPRIPLKDLTDVSQINRGDVATSLLVFNTTTNNVLSNGFYYWSGVKWVRLINNQDIIDNIDTFPRNKVLEVRGDVLVLEDTKGLKVDTPIQDLNIITTIKEGENGTYVYKNEAGEESVINITGSVIENITEILNNTEVKEEIYNTVAAQGKAITAKDNSITLVGGNKAVLEETQIAVTDGGITTAKIAAGGKKQILITNAKGEVVWVDATDEVIIDAVKNNETVTVLLDKGNGTFEYYNEKAIDAKGNLIADGNLIADKAVKFNANTLSIVERKGKEKGIYDFFDGEHKNTPLMTISTRANSIYFDNSSTTIEGDNLQEVIENIITKIEVAQGTPSSIKGGTEILINGETELADAVLKDMTLSIAPGAITTEKIEAGGKKQILITNAKGEVVWVDATDEVIIDAVKNNETVTVLLDKGNGTFEYYNEKAIDAKGNLIADKAVKFNANTLSIVERKGKEKGIYDFFDGEHKNTPLMTISTRANSIYFDNSSTTIEGDNLQEVIENIITKIEVAQGTPSSIKGGTEILINGETELADAVLKDMTLSIAPGAITTEKIEAGGKKQILITNAKGEVVWVDATDEVIIDAVKNNETVTVLLDKGNGTFEYYNEKAIDAKGNLIADKAVKFNANTLSIVEREGKEKGVYDFFDGEHKDTPLMTISTRANSIYFDNSSTTIEGENLQEVIENIITKIEVAQGTPSSIKGGTEILIYGETELADAVLKDMTLSIAPGAITTEKIEAGGKKQILITNAKGEVVWVDASDEVIIDAVKNNETVTVLLDKGNGTFEYYNEKAIDTKGNLIADKAVKFNANTLSIVEREGKEKGIYDFFDGEHKETPLMTISTRANSIYFDNSSTTIEGDNLQEVIENIITKIEVAQGTPSSIKGGTEILINGETELADAVLKDMTLSIAPGAITTEKIEAGGKKQILITNAKGEVVWVDASDEVIIDAVKHNETVTVLVDHNNGKLSYYNEKAIDAKGNLIEENAMTFDSNTLKIVAQTDGTYAFYDGRSKTEPVGIVDVPASVITNIEEILNDESVVNVIYDKVAAKGKEVTSVDGSIQIDNGGQATLNAMQISIAEGGVTPNKIQAGSKKQILITNAEGKVEWVEANEEVIKEVVQNNERITRLEAKPDGTFMYYNELAVNEKGEIIGEGVEFDANTLSIEESTSTPGIYTFSDKKGVIKDLDIRASNIIIDDTTIGSGNDNVQDILESIYEIINNIDSQKRDLKGKGILVNGGKIVEKALLAEVELSIDDKAITTAKLDTKAVTNAKVADHAITENKLWAGEGREKQVAVVQADGSVKFQELNAVVTGKMLSVDNSLLVGGDASNALLQAVDIKVNDLGIVTKHIDHNAVTADKIGSEDAVSNAVLTANGSGGSAFKPISSVVDTAMQGDIQGDDAIEVIGGENIIFGDDKKIATINLKERGVKGGHIATKTIIDENIADTTITATKLNGGTNNVNAVATVIDNKGTVAYQPLKGDAISDKAALKTDGIITIGGVNLQEGTLLKEATLSIAPKGINTAQIADNAVENLQIADLAVSSDKITSGTVGTGRVLLSDVAGKTKWGELSDITTQLAGDLTTDEIIKLTSQDGDGEKALLKDVKLSVNDNSITKSKLSSVEEGTNIDEDMLLVADGHGGFKYIKKETVSIETEDLTLGSALTFINKSTGKDAVLVNTSIDVNEGGISTGKLADAAVTIDKITSGTAKENTVLTANGSGKVEYKKLADSVFEGQGKDLKGDNSITVTDNNQALLNDATISIADSGVQTKHITGRAVTADKIGAEGTSNGLVLVTKDGGAEFSPISDAIAGAGKEIKGGSAIEVTKGNKAALQDVSIDVANLGITNAKIAERTIQASKFDAKGNAAGTVLTSLGDGEAKYVPLNQYAKPLKGDSSIEISTDKGVLLADATIKVKDSGIDTKHLGAKVVTTEKISSKVGNGVADKQQILMADGEGGVYFGTSENVVTKGNINEGTTISATKGATGAVLQDVTLEVKGLSIDTKHIRDNAISPAKINDKAVTEDKIDTNAVTSSKIANNAVTTDKMKSNNGSVNALKGNVLTAQGDGTVKYSKMSDNGQFLKTDGSGPISIKTADHGRIVLEETTINIKEKGILEKYLADSAVTNNKIKDGAVTTNKMSAGNATIGHVLTVEKDGKVAFKASDVSKGNIKESETIKANNGTNAVLKDVTLEVIGGSIDTKHIADYAVTHKEIGDNAIHGRVIANQGIDESKIDADNAKSGQVLMAKSDGSAYWGDVKAETEISTGDFLRSNTIEAEDGSDALLKDVKLEIKLGSIETKYIADNAVGTGELKDDAVGYSQLKESAVHGDVIKGKGVDETKINSEGAEQGDVLVADGQGGAEWKKVSGGSEGVDKASMPKFFYLPAIYVDIVSGAKGITRDIHADYADQFGKPMVSSLGGNKSTLPILGYGDFNYYVTYYDTEVFYDVKVTINGDLEYSVRAGAKPTGRTFFNIVLEVK
>NZ_CP010817.1|WP_041893233.1|2959590_2961069_-|hypothetical-protein
MKKYYYLMIACFSLLTLQAQVYEYPLTGTEKPSGIVEEWDRGGSAPSGSERYTTEGIVLSHDRVGYSGFAIDDLEIDLRKGTKIEFEYAMSSILGTGYGAGGGMTFFLFDAEKKFKLGYGRSALGYAYNESNSTARLSGLAGGYLGIGFDLSGGFKGTGAMRAYEMREGISNKRYEEVGVTPNVFGNYYDSHITLRGAIQGNTGFRGNPVLYSQYYGYYFPDPNETTTALLDYNTGAYKFERANNSPYFNIANGGNSSNPNFQKIIVELVPEEDESAMYVTVKAKEGNNEVVLIDNFYYKHNFKTYAIDGYDFSGELKEYEYDFNTRIPNKVKIGFVGLSIDFAQQKTIIRNVKVSPIDDNGGGDEGVDLEDEYEEICISKNLSSEGAVAFIDILEDTDYNVDWSSFMFVDVDGNKKGDDYYSDYYAKWEYDRYDKQVKMTVQFDFYKPEENLEIYYSVLVDGVRSKPAMIRVRSIECGAIANPQINTKSDH
>NZ_CP010817.1|WP_041893253.1|2993567_2994809_-|DNA-polymerase-IV
MLLFIASNIHIIANIDSNFVKDFLIISIMERAIAHLDLDTFFVSCERLVDSSLNGLPVIIGGGDRGVVSSCSYEARQFGVRSAMPIRMATRLCPQAIVRKGDMQLYSKMSHLVTDIITEKAPVMEKASIDEFYLDLTGMDKFFGSALWIKELTQTIQHESGLPLSYALSINKTVSKIGTGEAKPKGALNITAPEVQPFLNPLSIRKIPMLGEVSYTLLSRIGIRNIQTLSEMPHQILHKLLGKNGIDLWKKANGIDLTPVEPYRERKSISSEHTFDQDTIDIPMLKSIFTGMVEKLAYQLRSEEWLTSIITVKIRYTNFDTETKQTRIAYTSADHTLIKLVHELFDKVFQRRMRLRLIGVQFSGLVRGTYQMNLFEDTEEMMALYQAMDRMKKRYGVDAVVRCSGAFLKMKKE
>NZ_CP010817.1|WP_006258618.1|2994809_2995577_+|LexA-family-transcriptional-regulator
MSFLSDNIRYLRAQKIMSQQKVADELMITRARYSKYEEGASEPPLEVLLRISRFFHVSVDLMISVDLRKVPMQDLLKLEDNRILLPIMVDPHGNNFIEIIPHKARAGYLTGYADPEFIQNLDQISLPFLKEGKYRAFPIEGDSMPPHQEGSFIIGSYIERLDYIRNGHTYIIITANEGVVYKRVYRIDDETLELHSDNTFYEPYRIKAYDVLEIWEYASSIATEEFKPEDLGEPDTKAMFQEIRHMLGEVIKKVK
>NZ_CP010817.1|WP_006264282.1|2995949_2997014_-|2,3-butanediol-dehydrogenase
MSTMKAARWYAAKDIRVEQTEIPTPAKGQVKVAVQYAGICGSDLHEYVHGPQLIPLDKPYPLNGHQGVTTLGHEFSGIVEELGEGVKNIKVGDRVVIEPIYKNFDSPFVASGEYNLGEHLGFIGLAGNGGFAKYVVVEDYMIHKIPDTMSFEQGALVEPAAVAVYSVLQSGLKVGQTVLVSGAGPIGLLCAQAALAAGASTVIVTDVAEKRLEKAKEIGATHVFNAMEADLPAKIKALTGGLGVNVFLDCAGVQASYNTGIASTRNGGTAVLVALFGKPVQHDALDQVLREITVKGVIAYRNIFPEVINLIDSGRMEVEKLVTNKIGLDEIVTNGFEALVSNPEQVKILIDINR
>NZ_CP010817.1|WP_041893259.1|2997719_2998148_-|GNAT-family-N-acetyltransferase
MDIELTSTPKKEDLEAISEGIKSYNQNYLPDNVVFENDIRFAVFAKDKKGKVVGGIRACAFWNYCIIELLWLSEETRGLGIGRKLMKAAEEFALDKGFRYMRTETLSFQARPFYEKLGYRVFGELADYPKGHTTYCLVKELK
>NZ_CP010817.1|WP_041893261.1|2998837_3000745_+|hypothetical-protein
MLAKLRLDQTKKYEQAIVTYEIAVMLVDFALGRSHYLSIGSEQGDISTWDDIVIEKDKNSQIHIQIKRQTSGDFGSKNDECIRNKYSRGERKDLERDLSPLDETLKSLANWCKDIDISNISPKREFWIELPELNTQIKNGLQIRNLKDLCEVQIKPAVTTADMLQTQASTDTNIKNCFDWLTTWCEFENWEHILKALTFLKIKNSGLESDIECKTEDKLKEIFISDKLQEIRLKILSYTIDNTTFSGAISPRNLLFQLKEYIRSDIKIWTQIDHIDNNWQIMGIHDLESNTEIERPCKTIPLLWSNERSRNLNINIAKVNDPLTPIHESIFQLAIHLDGNVNGFCANWDGWKVYIENKIGGTFGVREDDFEGIRISNNNASFNASGGKIMNTHAEREAFAKEMNHQMTKETWKLVSEKISWRISQMVTSQSPELRDAVEVRWNVWQDIITKDESILIPLLKRIVHPNAEGEEILGHLRIGPKTKLLIADALFTCLLISVALGSIDAGIMKTEDGLSIGAIGLSWWSGPAGKTRKIRRIDEEESIDDLIGKETYDILILSESEQPEGEIYKQSISDSVKIDHSLAAGNNPKLLITKNRIFNSIIKKGSIDELKTYLKQKLKIYNDSLIETLNNNIS
>NZ_CP010817.1|WP_041893263.1|3000741_3001362_+|hypothetical-protein
MTFDQFAYYIHHQIEARFSIKSQGTIEEEMIEVASEKLQNKKLIRFFRTIETSEPSLKTLLVVGINSDNHLKDVLQWAALCKELLLDPETADIYLAIIWTEGTQPSIEECLRIEASEVFCRKFVLRPDETKESFVERTFITKVDAPTPLDLGQDPLISAFSVLEQEFAWFNDEEKIKWREAFSSGMSSFDLFNILINNQSESNEAS
>NZ_CP010817.1|WP_041893265.1|3001348_3004309_+|AAA-family-ATPase
MKHLKKITISNARRFGKNVEIELSSGANIFLAPNGTGKTTLFEAIEFALTGSIQRLTNPPLSLIRDTQNGVDVRLDFDNGNYCEVNYQKGLDPKISGNHDLLFPGHSINDIPFLLRLTHLIEQRGNNWFIQKGESSQAGDLLDKLSIGKDLSAISKTKSNTLNAATRTINDKKDEKDKQQQRISFFEGKLEERDNAKLNYVLKPLNEIIDQVQSVHKQFDSSSNSENIDQNPDAVASYRGLVNSIILKLEEDNQKRLFNLSNLESKISLFESNNTEIAEKQKQIAGKTEIIHKANTDISQLKNSLATLKDTFNEQKDIQKDLQKSKRLLDKKKEEEVKLASTEKSIKSISEYISEQIEKLKSESELVNKLNQKIVTFNSIKESEEEALKKQGKLNSLQLVIEDWNMHLQKVTQLKEIISTEKEQKAHYEKKIEDFQTDLVIIEKLFNESQTKLNSLKNASDAILGAVGIIATNLPDDQRKCPVCNAEYEPDELSKQIALALEQIDPIISSEIETNNKLKTEVDTKKQQIQNEKTTLSKINENLVENEDKLKNAKEFINEKCIPRFPDSNNITEAKEWLKGKKEKNKVNIEKIVKDKTEFGEKPSSEELSKLITARDQTNGTIQSSEINVITLKVSLENVKTEIEKINQTLSLINTDLLDSQISTIATEIEATTLKITDNNRASEQIVKVKREVEEQITDLNMAISKLQGQQNEMLAEWKDSNLIEPPSLDNLNIGKNKLILNDRLIKKGLADLNKMSDELGRWNAAEKFATLDKEIKEICESQEEQAYLSNMRERLATINGELSFLRERKAALEKLYHKIGEEVDGVHDKIKAINPLWVSLLKKIVVNPRFMDTKLDSYSHRNKSQAKVEIKLHEKQVSVMEVASEAQATDLQLTFMLSMASTYKWTPWKSLLLDDPTQHHDLVHASGVFDLLRDYIVDQDFQVLMGTHDINQAKFFQRKLENDNIDVKLWRLVANDDGVRAELMN
>NZ_CP010817.1|WP_041893266.1|3004492_3006031_-|ADP-ribosylglycohydrolase-family-protein
MKPETKYKGSIKLSAIGDALGWITEFEKHTQSIKEKFGVERIDKFYTWQKTVGGRFYGYKDNIKAGSYSDDTQLLLAVARSIRSNGNLDHNYFAKIELANWLDYARGGGRTVKTAAEKIQRKSVQWFNNFYHFKINNGEINDYRQSGANGAAMRVLPIALANLGDIDKIKEEIFCNSIITHGHPRALLGAMLYGYAINQMIVIRPEDFNWENYITQIGLDFPKKFELSFLNKPELKEWLKEWNKSSNKSFEVVYEEVLIETQQYLRLVYQNIKQNISVQETLQKLGCFALATKGSGTSTVIAGIYLATKFHNQPLLSIIEAVNALGSDTDSIAAFAGGLVGALHGHNIIPEQWKCVQDIEYLDRTSERLLAISEDRLVEVHDNFPTQKKVLNNPRTDDFILNQEIEFIPLGYGKIINIDRQHTLTKGKYNLIIEANLDLGQSILVTKLFNDLNFETKLNKEKSISDIEHIIQLAAINLKPGVFDKFKDYLSKQKRISKDQLEMLKIIIENES
>NZ_CP010817.1|WP_041893269.1|3006030_3006711_-|DUF4433-domain-containing-protein
MEFKSNYLEYQKDIEERGIEYLIHFTPAINLLSIFEQGKLLSRTLLEQFDIDQTDIFDYVEFTDNIRFDDKNYINLSIQHPNSFLFNRFRQKTANESHIFWCVLKIDKKYIYQTETLFSITNAANSFNKRNIGVTGDITKFQMLFSNSLEVVTSYNSKTVSRNDLPAKYPTDEQAEVLVKNEILVSDIIQVCFKDENDLAMGKAALSDYNTSNFVVDTSLFTNTRL
>NZ_CP010817.1|WP_041893272.1|3006713_3008222_-|ATP-dependent-helicase
MLKKITLKGEQKKVLFLPSSNPIQIKGVAGSGKTTVALYRAKHLLETEANLFNETKIVIFTYNKTLAAYITAIKPYINGGYQKDNDEIKPRTNDGLNVQIINFHSWAYHFAGIQYDQTIKQWKQIELIENIINTITSDSSKILEKSAEFFLEEISWMKGKLFKTKDEYLEAARTGRGTSDRVTKVDKEVIWIVFERYNQELKLLGKVDFDDYAILALKKIETDPNFVPPYSHIIIDEAQDLNKAQILTISKLVDEQTNSLSIIADAAQRIFKSGFVWSEVGINVRGGRTIEFKKNYRNSVHIARAAISLLEKEQDKSEFTTIETATRDGEKPKIGYYLDFLEQMKNVNNQLKSLKSNNQLHNTVILHRSTSGVNNIKTYLNDNGFSTELVKSNLPVDYGSESIKICTMSSVKGLEFNNVFILDLNDDIIPYPPGFIESDDEYHISTERRLLYTCMTRARNTLFLFSSDNSNPSRYLKEIDTSLLEDISPNKTTQIIDDDLPF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP010817_11	11.2\|2923951\|22\|NZ_CP010817\|CRT	2923951-2923972	22	NZ_CP010817.1	2923845-2923866	1	0.955
NZ_CP010817_1	1.1\|40237\|44\|NZ_CP010817\|CRISPRCasFinder	40237-40280	44	NZ_CP010817.1	41104-41147	2	0.955
NZ_CP010817_1	1.1\|40237\|44\|NZ_CP010817\|CRISPRCasFinder	40237-40280	44	NZ_CP010817.1	41181-41224	2	0.955

1. spacer 11.2|2923951|22|NZ_CP010817|CRT matches to position: 2923845-2923866, mismatch: 1, identity: 0.955

tggacatactatacagtagacg	CRISPR spacer
tggacatactatacggtagacg	Protospacer
**************.*******

2. spacer 1.1|40237|44|NZ_CP010817|CRISPRCasFinder matches to position: 41104-41147, mismatch: 2, identity: 0.955

caaatcaacccaatcaaaacacaaacaatcccaatcaacatcaa	CRISPR spacer
caaatcaacccattaaaaacacaaacaatcccaatcaacatcaa	Protospacer
************ * *****************************

3. spacer 1.1|40237|44|NZ_CP010817|CRISPRCasFinder matches to position: 41181-41224, mismatch: 2, identity: 0.955

caaatcaacccaatcaaaacacaaacaatcccaatcaacatcaa	CRISPR spacer
caaatcaacccattaaaaacacaaacaatcccaatcaacatcaa	Protospacer
************ * *****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010817_12	12.2\|2993394\|32\|NZ_CP010817\|CRISPRCasFinder	2993394-2993425	32	MN693685	Marine virus AFVG_250M1024, complete genome	14452-14483	9	0.719
NZ_CP010817_12	12.2\|2993394\|32\|NZ_CP010817\|CRISPRCasFinder	2993394-2993425	32	MN693729	Marine virus AFVG_250M1023, complete genome	22642-22673	9	0.719

1. spacer 12.2|2993394|32|NZ_CP010817|CRISPRCasFinder matches to MN693685 (Marine virus AFVG_250M1024, complete genome) position: , mismatch: 9, identity: 0.719

tattgtggttacgttgtcagacgtatgtaata	CRISPR spacer
tccaatagttacgttatcagacgtatctaaag	Protospacer
* . .*.********.********** *** .

2. spacer 12.2|2993394|32|NZ_CP010817|CRISPRCasFinder matches to MN693729 (Marine virus AFVG_250M1023, complete genome) position: , mismatch: 9, identity: 0.719

tattgtggttacgttgtcagacgtatgtaata	CRISPR spacer
tccaatagttacgttatcagacgtatctaaag	Protospacer
* . .*.********.********** *** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3918239 : 3927980

Bacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041894797.1\|3918239_3921386_-	UvrD-helicase domain-containing protein	A0A068EQC7	Bacillus_phage	7.9e-09	24.4
WP_041894799.1\|3921497_3922103_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.7e-61	58.5
WP_041894801.1\|3922266_3923697_-	pyruvate kinase	NA	NA	NA	NA
WP_006259881.1\|3923701_3924190_-	IPExxxVDY family protein	NA	NA	NA	NA
WP_041894805.1\|3924287_3925034_-	ribonuclease III	M1HR51	Paramecium_bursaria_Chlorella_virus	6.4e-18	32.0
WP_006259883.1\|3925049_3926372_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_002988156.1\|3926504_3926741_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	1.8e-06	38.1
WP_041894808.1\|3926937_3927498_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.7e-18	33.1
WP_006259886.1\|3927506_3927980_+	ribonuclease HI	A0A2I7QI15	Vibrio_phage	3.1e-26	45.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010817

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection