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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010086 Clostridium beijerinckii strain NCIMB 14988 chromosome, complete genome 5 crisprs DEDDh,RT,cas3,csa3,DinG,WYL 0 3 11 0

Results visualization

1. NZ_CP010086
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010086_1 1340091-1340296 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010086_2 1658747-1658830 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010086_3 3571711-3571799 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010086_4 5033871-5033967 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010086_5 5924674-5924820 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010086_5 5.1|5924701|33|NZ_CP010086|CRISPRCasFinder 5924701-5924733 33 MT446411 UNVERIFIED: Escherichia virus TH40, complete genome 28967-28999 7 0.788
NZ_CP010086_5 5.1|5924701|33|NZ_CP010086|CRISPRCasFinder 5924701-5924733 33 MT446412 UNVERIFIED: Escherichia virus TH41, complete genome 156610-156642 7 0.788
NZ_CP010086_5 5.1|5924701|33|NZ_CP010086|CRISPRCasFinder 5924701-5924733 33 MT446392 UNVERIFIED: Escherichia virus TH15, complete genome 21954-21986 7 0.788
NZ_CP010086_1 1.1|1340117|34|NZ_CP010086|CRISPRCasFinder 1340117-1340150 34 CP020755 Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence 533546-533579 8 0.765
NZ_CP010086_1 1.1|1340117|34|NZ_CP010086|CRISPRCasFinder 1340117-1340150 34 NC_020385 Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence 274338-274371 8 0.765
NZ_CP010086_1 1.1|1340117|34|NZ_CP010086|CRISPRCasFinder 1340117-1340150 34 NZ_CP021062 Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence 164608-164641 8 0.765
NZ_CP010086_5 5.2|5924761|33|NZ_CP010086|CRISPRCasFinder 5924761-5924793 33 KC821604 Cellulophaga phage phiST, complete genome 48350-48382 11 0.667
NZ_CP010086_5 5.2|5924761|33|NZ_CP010086|CRISPRCasFinder 5924761-5924793 33 KC821621 Cellulophaga phage phi19:2, complete genome 48359-48391 11 0.667
NZ_CP010086_5 5.2|5924761|33|NZ_CP010086|CRISPRCasFinder 5924761-5924793 33 KC821625 Cellulophaga phage phi13:1, complete genome 46260-46292 11 0.667
NZ_CP010086_5 5.2|5924761|33|NZ_CP010086|CRISPRCasFinder 5924761-5924793 33 HQ634192 Cellulophaga phage phiST genomic sequence 30544-30576 11 0.667

1. spacer 5.1|5924701|33|NZ_CP010086|CRISPRCasFinder matches to MT446411 (UNVERIFIED: Escherichia virus TH40, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccgttatcatttaaccaaccagtttg	CRISPR spacer
aaaagttccgttttcagttaaccaaccagaagc	Protospacer
.*********** *** ************    

2. spacer 5.1|5924701|33|NZ_CP010086|CRISPRCasFinder matches to MT446412 (UNVERIFIED: Escherichia virus TH41, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccgttatcatttaaccaaccagtttg	CRISPR spacer
aaaagttccgttttcagttaaccaaccagaagc	Protospacer
.*********** *** ************    

3. spacer 5.1|5924701|33|NZ_CP010086|CRISPRCasFinder matches to MT446392 (UNVERIFIED: Escherichia virus TH15, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccgttatcatttaaccaaccagtttg	CRISPR spacer
aaaagttccgttttcagttaaccaaccagaggc	Protospacer
.*********** *** ************    

4. spacer 1.1|1340117|34|NZ_CP010086|CRISPRCasFinder matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 8, identity: 0.765

taaataataagttttaccgtttaattcaagtaat	CRISPR spacer
taaataataggttttaccctttaaataatacagt	Protospacer
*********.******** ***** * * ..*.*

5. spacer 1.1|1340117|34|NZ_CP010086|CRISPRCasFinder matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 8, identity: 0.765

taaataataagttttaccgtttaattcaagtaat	CRISPR spacer
taaataataggttttaccctttaaataatacagt	Protospacer
*********.******** ***** * * ..*.*

6. spacer 1.1|1340117|34|NZ_CP010086|CRISPRCasFinder matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 8, identity: 0.765

taaataataagttttaccgtttaattcaagtaat	CRISPR spacer
taaataataggttttaccctttaaataatacagt	Protospacer
*********.******** ***** * * ..*.*

7. spacer 5.2|5924761|33|NZ_CP010086|CRISPRCasFinder matches to KC821604 (Cellulophaga phage phiST, complete genome) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

8. spacer 5.2|5924761|33|NZ_CP010086|CRISPRCasFinder matches to KC821621 (Cellulophaga phage phi19:2, complete genome) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

9. spacer 5.2|5924761|33|NZ_CP010086|CRISPRCasFinder matches to KC821625 (Cellulophaga phage phi13:1, complete genome) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

10. spacer 5.2|5924761|33|NZ_CP010086|CRISPRCasFinder matches to HQ634192 (Cellulophaga phage phiST genomic sequence) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 428539 : 486163 56 Clostridium_phage(16.67%) coat,transposase,protease,tRNA NA
DBSCAN-SWA_2 1221033 : 1231238 7 Cyanophage(28.57%) NA NA
DBSCAN-SWA_3 1264848 : 1276372 11 Escherichia_phage(28.57%) NA NA
DBSCAN-SWA_4 1317228 : 1323271 7 Clostridium_phage(33.33%) transposase NA
DBSCAN-SWA_5 1765922 : 1779584 10 Streptococcus_phage(88.89%) NA NA
DBSCAN-SWA_6 1868483 : 1918343 49 Shigella_phage(20.0%) coat,transposase,integrase attL 1857331:1857347|attR 1899283:1899299
DBSCAN-SWA_7 2500985 : 2536373 38 Clostridium_phage(41.38%) portal,terminase,tail,capsid,head NA
DBSCAN-SWA_8 3168301 : 3177473 9 Paenibacillus_phage(33.33%) NA NA
DBSCAN-SWA_9 3654908 : 3661484 7 Paenibacillus_phage(16.67%) protease NA
DBSCAN-SWA_10 4241007 : 4250743 11 Clostridium_phage(90.0%) plate,tail NA
DBSCAN-SWA_11 6090190 : 6103791 10 Streptococcus_phage(88.89%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage