CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009440	Francisella philomiragia strain GA01-2794 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,WYL	0	0	3	0
NZ_CP009441	Francisella philomiragia strain GA01-2794 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009440_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009440_1

996559-996649

Orphan

Consensus_repeat	Method
TTTGCTCTAGTTGTAGTACTTTTGGCTTTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP009440_1

>merge|NZ_CP009440|1|996559-996649|CRISPRCasFinder
TTTGCTCTAGTTGTAGTACTTTTGGCTTTTGTCGTACTAGTGGTTTTGGTAGTACTTGATTTTGCTCTAGTTGTAGTACTTTTAGCTTTTG

>NZ_CP009440|1|1|996559-996649|CRISPRCasFinder
TTTGCTCTAGTTGTAGTACTTTTGGCTTTTG	TCGTACTAGTGGTTTTGGTAGTACTTGAT
TTTGCTCTAGTTGTAGTACTTTTAGCTTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009440.1\|WP_044526119.1\|991084_993934_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009440.1\|WP_044526128.1\|1005632_1006661_-\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NZ_CP009440.1\|WP_044526113.1\|979871_981089_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP009440.1\|WP_044526121.1\|996771_999390_-\|type-VI-secretion-system-ATPase-TssH	unknown	unknown	gnl\|CDD\|274528
NZ_CP009440.1\|WP_044526126.1\|1003083_1005240_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NZ_CP009440.1\|WP_044526117.1\|986802_987564_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP009440.1\|WP_044526114.1\|981144_981948_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009440.1\|WP_044526116.1\|983579_986027_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009440.1\|WP_050022776.1\|982002_982761_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP009440.1\|WP_050022777.1\|986036_986795_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP009440.1\|WP_044526115.1\|982768_983518_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP009440.1\|WP_044526127.1\|1005251_1005581_-\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NZ_CP009440.1\|WP_044526129.1\|1006670_1007003_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP009440.1\|WP_044526123.1\|999971_1001858_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368682
NZ_CP009440.1\|WP_044526120.1\|993975_994416_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009440.1\|WP_044526124.1\|1001961_1002297_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009440.1\|WP_044526118.1\|987624_991095_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009440.1\|WP_044526122.1\|999401_999788_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009440.1\|WP_044526125.1\|1002335_1002839_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009440.1\|WP_044526130.1\|1007159_1007558_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009440.1\|WP_050022777.1\|986036_986795_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	9.32808e-07
NZ_CP009440.1\|WP_044526115.1\|982768_983518_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.00796e-05
NZ_CP009440.1\|WP_044526113.1\|979871_981089_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	5.51263e-10
NZ_CP009440.1\|WP_044526121.1\|996771_999390_-\|type-VI-secretion-system-ATPase-TssH	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP009440.1\|WP_044526126.1\|1003083_1005240_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NZ_CP009440.1\|WP_044526117.1\|986802_987564_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	8.70377e-12
NZ_CP009440.1\|WP_044526123.1\|999971_1001858_-\|hypothetical-protein	gnl\|CDD\|368682	pfam05954, Phage_GPD, Phage late control gene D protein (GPD). This family includes a number of phage late control gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences.	2.70872e-05
NZ_CP009440.1\|WP_044526127.1\|1005251_1005581_-\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	3.32879e-24
NZ_CP009440.1\|WP_044526128.1\|1005632_1006661_-\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	3.21293e-131
NZ_CP009440.1\|WP_044526129.1\|1006670_1007003_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	4.11637e-14
NZ_CP009440.1\|WP_050022776.1\|982002_982761_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.99115e-06

>NZ_CP009440.1|WP_044526120.1|993975_994416_-|hypothetical-protein
MTMKQRMKMTYLLYIFSVFFIPLMAFVLFFANKERKQQPKKWVKTHCNTLIRYTLLNLAWIVTTILIVYIASLIGGKTYTFFLLLSWIGMIWLWAFNLDQYFTLVVAFLVERELGTPRYFTEMKVLAKLMYKSIVEKFQRRKIKRL
>NZ_CP009440.1|WP_044526119.1|991084_993934_-|hypothetical-protein
MSIQRHLTLSIDNQKLELEVASFEYLGKINNGYDVEFIAYTDENIQSFIGCRFDFSYSGVAITGGSIRGYVREAILGYDSKQARQMYRIICRSVVGFLKDYYLKKMFSESSNQAIITNMLETLCSTQADFIGLFNSLEIQQNSSQLLNGNAFEFFNYQFNNYGFYIANDKYLDRDVVDIYSQPNDLTGMSGSYNVTKSANQTAINQVKSFKKHTYKHLPDLDILGYDIDLGQDATIADSPFAITEENAARIFYDNNFKQNDAKELTKRINLSINSLNGLSQLTLENIVHREGDIIELTSGIETKRYWVYSSHVRANVEETKHWAIETYLNILELTDNPWYPPLAAKPLTKVVEGFKYNSQQGLGKYNKLPIKSDIPFNQDKDLSHTRNVSLSSSKTGGVYSSPQSDSRLVLATSDNNREYVSLGFSSDATADEHVSSKNIQDSGIYSAGNVGLGFTRTRAGQDYSKVSLYSQSSEGKVSELGLGGENTTSHNDDFTRNTFSNDYPNLEGIIKRSVNSAIDIAAGDIALNYGDVENITVDKRTTSDKATDHYRHTINSDNYLHRYFIKNFSENKSATDAVDTNFITDFKLNTAKINDNYQTTVIWATERPTANKIELDGQQEKLAKQYYSFEKKQNNYNFKITLDNQTQLIAQGTNLDENIKSISIQAEPLSKTKTYGLVVGWSIFGKGSLEISGNSVEISKQRVFVELKDAEPLVFKFNIDGNTSTLTVQLCQLKAIKSDLAPLPDADEIITADDSGINYQSNLEQHIVYTDKLVASDDNPETDILTWHDNYTSQNYNNTNSSKLVGQYQANKLAQAKSYHGDSLAKAEDISTDAIYKRDHQGNLSVIHNAKFEETKKLSDRYETKNIAENEIKKHTETIQLEDYTKKAETNIKGDITMQSNKATRSYAEYSLTGLQGMNLEIEKLELNAKESKIIAKEYNIGEQDDGQ
>NZ_CP009440.1|WP_044526118.1|987624_991095_-|hypothetical-protein
MGNSKFTDISDKKFLISTMNFYNNCKSSDVNKMDDLGDLVNSLVADTVAGTDGQYRDEDNTPGLKHLYADIRWKKLLSEDYAGYESIDVLSYISSYLRQDILDKIVDIYSTKDLAEDRNLKVPKNITSWSNFLRNGYTAKKNALREAQQLKNSFLRKLDVKDFTNRARIVNEISKIDDEINQLETQQNTDIENFKKRIKNDLELKAMEYVRSGYLYVFIKSSDYKDKNGNTPYTQTSLYKEYKIDTQDSPRPIYNEIILDSHNIGLDDRNSEDSQVNKPAIPAVYIDENKQQHPVETRLLFSEVQLSWARLAKLAGIDKSDERAKDCQNENFDKCTRASQIESYKSPIKQSRLKTFYNLWLTSDKSSYYNNQQNNEPLTKSDLEKEDLYFKPGKRKNYDLNLLVDDPFGMVMQYALTIADLRVKLKNIVEELDTNTVMKSALMTYQTFFNPRAMQGIDLAQYHVKVNDILSYDGVNISEIAYRYRSEWEAKSRSYNEIQKGRKNLDKSKLEMTLKKNTRGVIKKLIEQLQIDGLEFLKDQKDELTDFFSQGELGYASVHADFWGKLEALTQDPSSFDDSMEISNLPVTTLNITDSPNITATLVEYNQTGFHVEKKTTTYNLQRNQRSDGMGVASITESTDIKYEDCEEEYQAKLPKAYVYLMNDILTDDDIVDKLLPNTDLDSDNLDSVHSQGVIDNLYRKADGAYNGGLLHQATEKIFDIVDDQFSFDKDVSLVTNFINGFSSAFLKAPNEILDKSNFPDRIKALSLDALKEKRSSISKRSAKENSGYTSMVTVVQGTYNQKTTDKIARINRKYKSKGNVKFKVRAFNSKVNEANAINNLKVAVEQERTINQESLNASKKLGERSEGYSVNSNVYKKIKGTNGLFTAKELNSKQMKMLARAHIFEGVLSSMLAVKSIADIKKSIESDQKDAQKANRNNNYTTSDEIKSYVQCLKYTTDFVKAIADNTQTAIAINNKINGYYMLAKGNNVTNYDKFAKYIKDGESGAIKLDKAVKFLALLSTSLSLVEDFLTFIKHAGQNDQAVAASDLLNLLSSGFAVASAVKGVTEKVAKSTGKNVGIFGARLAEKEAVAAGFKVAATEALAGLAVRQAILGLIPVVNILSLLALACQIGSWILLLFKDNIFEQWAKASRFAND
>NZ_CP009440.1|WP_044526117.1|986802_987564_-|sel1-repeat-family-protein
MKKTLSALSLIFISINAFASMEDCIHYSQTEQYKEAVKYCEPLANNNKNALIFTSNAYAQLHNGINTQKYGQLFIDKYANSENNEKILGGIYQGLGNTYYFGAYGAKKDTQKGLQYITKGAELGNATAQYQLGTVYFNGDNAPVNYPTAYMWYTISAYNGDEDAKNNFFKENEATYLSQAPSCIAIGDNMVAKAYLDGKGGLPVDTTEAKEYLEKAISLYKQSKEPTANELKYCKPVSDDLNLAGAQKLLASL
>NZ_CP009440.1|WP_050022777.1|986036_986795_-|sel1-repeat-family-protein
MKKTFSALSLLFISINAFASMDDCTEAAQSNNWSDVLKYCEKYKDTNRNALGFMIGAYGYYGNGLKAQETAQEYINKYSKNDPNKEILAGYTAGLGNYYYFGEDGAKKDTKKGLQYITKGAELGNTTAQEQLGNFYLVEGEYPSQNMAISYKWFKIASINGNQEAEQSYILTHLDDMKAQAGYCLAMGEQLVAQSYIDGNDGLLVDTSEAKKYLNDAVALYKDKKPTKEILEHCPAQKGLDLANAEKLLASL
>NZ_CP009440.1|WP_044526116.1|983579_986027_-|hypothetical-protein
MSYHPLYKSPIKTDRLKTFYNLWLTSDKSSYYNNQQNNEPLTKSDLEKEDLYFKPGKRKNYDLNLLVDDPFGMVMQYALTIADLRVKLKNIVEELDTNTVMKSALMTYQTFFNPRAMQGIDLAQYHVKVNDILSYDGVNISEIAYRYRSEWEAKSRSYNEIQKGRKNLDKSKLEMTLKKNTRGVIKKLIEQLQIDGLGFLKDQKDELIDFFSQGELGYASVHADFWGKLEALTQDPSSFDDSMEISNLPVTTLNITDSQNITATLVEYNQTGFHVEKKTTTYNLQRNQRSDGMGVASITESTDIKYEDCEEEYQAKLPKAYVYLMNDILTDDDIVDKLLPNTDLDSDNLDSVHSQGVIDNLYRKADGAYNGGLLHQATEKIFDIVDDQFSFDKDVSLVTNFINGFSSAFLKAPNEILDKSNFPDRIKALSLDALKEKRSSISKRSAKENSGYTSMVTVVQGRYNQKTTDKIARINRKYKSKGNVKFKVRAFNSKVNEANAINNLKVAVEQERTINQESLNASKKLGERSEGYSVNSNVYKKIKGTNGLFTAKELNSKQMKMLARAHIFEGVLSSMLAVKSIADIKKSIESDQKDAQKANRNNNYTTSDEIKSYVQCLKYTTDFVKAIADNTQTAIAINNKINGYYMLAKGNNVTNYDKFAKYIKDGESGAIKLDKAVKFLALLSTSLSLVEDFLTFIKHAGQNDQAVAASDLLNLLSSGFAVASAVKEVTEKVGKKVVVGIGGAAEKEAVAAGFKVAATEALAGLAVRQAILGLIPIVNILSLLALACQIGSWILLLFKDNIFEQWAKASRFAND
>NZ_CP009440.1|WP_044526115.1|982768_983518_-|sel1-repeat-family-protein
MKKILTTTLLLASISIANASMEDCIHYSQTEQYKEAVKYCEPLANNNKNALIFTSNAYAQLHNGINTQKYGQLFIDKYASSENNEKILGGIYQGLGNTYYFGAYGAKKDTKKGLQYITKGAELGNVKAQEQLGDHYNSNESTSPLDVATSYKWYSISIANGNSMSISGFKDTLTNQAPYCLAMGEQMIAKAYLNGDDGLTVDKSKAEQYLSDAIKLYKNNEPTKENLKYCKPVSDDLNLAGAQKLLASL
>NZ_CP009440.1|WP_050022776.1|982002_982761_-|sel1-repeat-family-protein
MKKTLSALSLIFISINAFASLDECTSAGLAKDYNAVIKYCKPYINTNKDALSVLTGAYAQLDRGIEAQKYGQLYIDKYSKDTDKESLGLAYLGVGNYYYFGEDGAKRDIQKGLQYITKGAELGNTTAQEQLGNFYNSNDGNPDLNIAISYKWFEVASINGNQEAKNNTVLQNVDVLEKQLPNCIAQGKSLVATAYLNGDDGLPIDSSKAKKYLTDAIELYKKEDKPNENELKYCPPQKGFDLANAEKLLASL
>NZ_CP009440.1|WP_044526114.1|981144_981948_-|hypothetical-protein
MNTDKFTTIDEEYQSLLNIFAQPNISINYDKEKGFDISIKPATQLQSIDELEYAVYLITKVKFYKVGDIFDEYSLAYKLSTNEIEVRYIETDRLDSIIIDIDKKSYDRSLGDMLKTTAIWLDPRMKLYNLINKVDLKDGIYEEGNWFSDSELFGIYVKARVKVDEHDKDGNVTKSYTIPNNSGINIVETIPEQTDYDKLIIKDEAYTTEQKMVTLYGDLSRQRFKDKINSLITEESIQNTANLGVYDSMNHKVEKDFRNSRGVSGRW
>NZ_CP009440.1|WP_044526113.1|979871_981089_+|pentapeptide-repeat-containing-protein
MSNEQEKRPLDDYCESIPSIQEIDHKGEYGAEPPLYNVSLGPDIVDELLEYPVELCSINNFVYDKLWTKPAYDSLLDKVQKLNKDWQEKTIDTIDHQDTDFANLNAQNCAIVSNKYTGANFSAAKFNSAKIVGCKYKNCSFTNSQFDSTELGQSEFTNCTFDNVNFDKATIKSIVFKDCTFTKCSFSGTQFHTTDLHNCNIIQSKFNSEMWYKGNILKTSILKTVFNKSQFSGMLIDSSKLTDSSFLKVTFFASQIQNAELNNNSWLKVGFANGNSIYKSLLYNENIQQCNFSDSEWREVEIQNSQMLNNDFSQVEMHDTDLVGVKGAGDNFATGILANCKLVDCDFAQANFTATDFIVNSSIQNCTLEKLIYAYANLPKGFDDNQLKKTSQAQIKPLTEKDLFL
>NZ_CP009440.1|WP_044526121.1|996771_999390_-|type-VI-secretion-system-ATPase-TssH
MSVLVELKTLVKQLNKKLTVSLESAVGLCMSQGNYEITLEHWLIKILSDEQPNDFTQILEHYDISVPDVVRELQINLRDFETGNSGKPLFSPLLLEIIQDAWTIGSLQFNAENIRSGYVLLALLNKKALLSQMNLLESLKIISKNKLIEDFDNFVAASSEKDQVKKTTKVESSKDSDSAIEKYCEDLTQKALDGKIDPVFGRETELDQMLDIFCRRRKNNPILVGEPGVGKTAVVEGLALRIAENDVPDVLRNTKILSLDITLLEAGASVKGEFEKRLTAVIDEIKSSEVPLIVFIDEAHRLIGAGGQAGNDAANILKPALSRGELRTVAATTWKEYKQYFEKDPALTRRFQLVKLDAPNDDMTVTILRGLKSRYTQNHGVVIRDDALRMAVNLSSKYITGKNQPDKAIDLIDTCAARVKVSMSSSPSIINHAIKDIGAYERELEGLLEDEARGVDTDKNSIEALKNKIDNLNQQIKINQEQWLKEKEIIQELQSVHDLILETDDETILSELIEQRSSLANQLEQAQDDAPMVFFEVSPDTVAKVVSDWTGVPLGKVLRDESQSLLTLDETLCKRIKGQDQAMLQVAQHLKMSKAGLKTPEQPMGVFLLVGPSGAGKTETALTVADTLFGGESSMCTINMGEYQERHTISRLIGSPPGYVGFGEGGVLTEAVRQRPYSVVLLDEVEKASLDVMNLFYQVFDKGSLTDGEGKEIDFSNTVIFLTSNLATHEITELTLQDPNISMQDLVAKIRPVLSNWFKPALLARTTIIPYFILTNEALKEIATLKLNKFAKQLRKTNKIELTYSNSVLENIADRCKEVETGARNIDMILKANVMPKLSEKLLLAMCDDAQIKSIHIDIDENNEFIYEIKFS
>NZ_CP009440.1|WP_044526122.1|999401_999788_-|hypothetical-protein
MAGIINTVGSGIYFSLEPVMYGPFLGIGTSTATQIGAQSQSTVFFENAPVDASDTIHPVTLSLPMLPGAITGTTCMPAKKVTDASNIFSINNQAVTNSGTHKVQNIGNCPTAPMILSTSHQARFYISK
>NZ_CP009440.1|WP_044526123.1|999971_1001858_-|hypothetical-protein
MSTPLTIELFNESTTLDLQVNELTIKSAINEPFEVSLSCGVPVGDDLLAKLDNYADFTLSINGDFGNPKFELELQSYDINYQPNTDIQILELKLTDRYAKFRKLDHKGAFYYHNLNDIWLKFYDGFKDRLNRKISDNILFDSNNTNKYPTHPIYVQYNETHWNFLTRALLEHGVNYNFVAGQDGFNFVMYNTNEDITKFIQSDKSNSIDELYSYNLKLDANIRNKDDTVLAYNIIPAKSGYVANKDIKDFCNYHNKEKQRPTLHSKKFIKNINFIHHNPYTPESFLISKATLDSKFPITQDFKSRFNTLTQSQLDECLNTQKNVLSSLDAEQLICNISKVFLLAGAKLDISGSNKLKSREHIVTSSLVKLSASTSTDKVIGATPKKNYNVITTLISQDIHIDYHQEAPEQPQISSLVGVFPYLAESSTNHDVVDPDDIGNVRVKLPLDYEVCPNNEKDIRYYVPRVSDYGDTNSSHSTQLYRESELLLMFIDGNPNKPIIYGALSHGQTSDQSMAEHHNRHVKEWGQGSGFGYSSDAKGTNDIFIKSQHNDGIAWVAQSNHGSKNELSLDQLFASTSNRSDTATGEYQHFYGYDDNTNFAANQHKSIKPKTIVEDMLKTKQETLQNKK
>NZ_CP009440.1|WP_044526124.1|1001961_1002297_-|hypothetical-protein
MKKVTIKSLLTLTAMTPSILFASFESVSDSFNTVSNSAQKTAEVSNQTQANIDKAKNLPNSYDSDAKQYATQELDKHTNNSISKTQQASNNITQTRDTIAKTSKSLNNLFS
>NZ_CP009440.1|WP_044526125.1|1002335_1002839_-|hypothetical-protein
MFKQIKKLKLLILYTFIITIFSSCVVYKDGYDNLISNTITYQKLEEPSFRKFSIKFPDSEIILNSTATSIEWTCPAPTVVPSALISNIPYNREKETLRCIAVGGCDTYSATAIRQKSSDKWSIEDDKVAVTYTQNAIVQIYNNTINSSGDTKLSIICVPKSQVDYWE
>NZ_CP009440.1|WP_044526126.1|1003083_1005240_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MQNFTFFASCAKGIELLLKDELNGLGISSSEKLAGVEFEGSFEDAYKVCIYSHLASQVMLKIATQKVIDQQALYDFISSINWLDYFDVNTAFKIIISGKHYDFNNTMFVSQKTKDAVVDQFRRETNERPNIDTDNPDNIIKLHLHKQYVNVFLCLNIESLHKRSYRQFQGQAPLKESLAAAILIKAGWLDELKKEQPILIDPMCGSGTILIEAALMAKNIAPVLLNKEFKLFNSKLHDEDLWSNLLEIAKKAQKLTNAIIQGYDIDNNVLDKADRNIYQAGVEDVVNIKRQDIRDLENEFESEGLMVTNPPYGERLYGDQLDELLDIFNGFGDRLSQDFYGWKVAILTSFDESIKEMQLRTIKKNKFYNGAIETVLYQFDINEHARFKHESQLEKNIRIAEASADKSDEHIDFSNKLKKNLKNLKPWLKQSGVECYRLYDADIPTFAVAVDIYGEHVFLQEYRADATIDQNMAKQRFYQAIYQIHKTLDIQYENIHTRVRQRQKGKEQYQKNNDKNNFHVINEFDAKFYVNFDDYLDTGIFLDHRKIRQLVAKASKNKTLLNLFSYTCTASVHAALKGAKTTSVDMSNTYLEWGKNNFELNNLDVKKHNFIQADCISWLKSNSEKFDVIFLDPPTFSNSKRMDDILDIQRDHELLINLAMDSLRKDGVLYFSNNYRRFKMSQQIIAKFNCENIDKICLSRDFLSNKNIHNCWEIKYKK
>NZ_CP009440.1|WP_044526127.1|1005251_1005581_-|multidrug-efflux-SMR-transporter
MPYVYLIIAIITEVLGTVSLPLCNGFTRFVPSLLVLIFYGLSFYFLSLSLKYMNIAFAYSVWSAFGIILIGIIGYLFFKQKLDLPFVLGTLFILIGTIIICAYSKTIMH
>NZ_CP009440.1|WP_044526128.1|1005632_1006661_-|ACR3-family-arsenite-efflux-transporter
MKLKFLDRFLTLWIFLAMIVGITIGYTLPEAKNFISKFDIGSGNWLIGLGLIVMMYPPLAKVKYSTMPEIFKDTKILLLSLIQNWLIGPILMFILAVIFFHNQPSFMIGLILIGLARCIAMVIVWNDLAKGSREYCAGLVAFNSIFQIIFYAAYAYIFITVIPKLLGFDTNINIDISMLDIAKSVGIYLGIPFVAGILTRIILISKKGEQWYIDKFTPAISPLTLIALLFTIVLMFTTKGNEIINLPFQVIKVAIPLLIYFLIMFSISFFISYKAKATYEQAVSLSFTAASNNFELAIAVAISVFGINSIEAFVGVIGPLVEVPVLIGLVNVALWLNKKYFN
>NZ_CP009440.1|WP_044526129.1|1006670_1007003_-|winged-helix-turn-helix-transcriptional-regulator
MSSITNFLKVISDKNRLIILYVLNKNTLCVCDIQKLISLTQGALSIQLKNLVTTGLLESFKQGKWVFYKLDKNIPKYQLNILNELFKQVDKDEEVQQIISRLEISEICKI
>NZ_CP009440.1|WP_044526130.1|1007159_1007558_+|hypothetical-protein
MSRFGQNLMYVGILAVVFISCIYFFVSKNIPEPKGIYLPKYSAKLPATDPKQVRIFNLRYQTDTQDSIGEIRVVIGVDQERDFQKLCNENIREAVKLAAQNGAHEIKYVCLFPEGQITELSSVQLRAYAFRD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

78887 : 89778

Staphylococcus_phage(25.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044525395.1\|78887_80672_+	elongation factor 4	A0A2K9L6L3	Tupanvirus	4.2e-23	43.2
WP_044525396.1\|80787_81867_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_044525397.1\|81886_82831_-	hypothetical protein	NA	NA	NA	NA
WP_044525398.1\|82926_83445_-	peptide deformylase	A0A067XQZ3	Caulobacter_phage	1.7e-17	38.6
WP_044525399.1\|83448_83892_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.5e-25	43.6
WP_044525400.1\|83895_85107_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.1e-86	44.3
WP_044525401.1\|85099_85705_-	riboflavin synthase	A0A1V0SE20	Indivirus	9.4e-20	36.8
WP_044525402.1\|85697_86768_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.0e-49	36.8
WP_044525403.1\|87140_88409_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	2.8e-29	34.3
WP_044527081.1\|88527_89778_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	3.9e-28	32.2

DBSCAN-SWA_2

1212858 : 1286376

Pseudomonas_phage(16.67%)

portal,tRNA,terminase,integrase,plate,capsid,tail

attL 1282561:1282576|attR 1286480:1286495

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044526314.1\|1212858_1213833_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_044526315.1\|1213822_1214665_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_044526316.1\|1214781_1215288_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_044526317.1\|1215403_1215658_-	hypothetical protein	NA	NA	NA	NA
WP_044526318.1\|1215797_1216784_+	ferrochelatase	NA	NA	NA	NA
WP_044526319.1\|1216799_1217699_+	hypothetical protein	NA	NA	NA	NA
WP_044526320.1\|1217682_1219095_+	deoxyribodipyrimidine photo-lyase	A0A1V0SGL1	Hokovirus	1.5e-63	35.6
WP_044526321.1\|1219178_1220453_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.9e-127	57.0
WP_044526322.1\|1220473_1221472_-	galactose mutarotase	NA	NA	NA	NA
WP_044526323.1\|1221452_1222628_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	NA	NA	NA
WP_044526324.1\|1222638_1223823_-	MFS transporter	NA	NA	NA	NA
WP_044526325.1\|1223897_1225406_-	APC family permease	NA	NA	NA	NA
WP_044526326.1\|1225559_1229624_-	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_044526327.1\|1229641_1229929_-	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_044526328.1\|1230145_1230529_+	hypothetical protein	NA	NA	NA	NA
WP_044526329.1\|1230582_1230807_-	hypothetical protein	NA	NA	NA	NA
WP_044526330.1\|1230860_1231946_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_044526331.1\|1231942_1232473_-	shikimate kinase AroK	NA	NA	NA	NA
WP_044526332.1\|1232598_1234359_-	type IV pilus secretin PilQ family protein	NA	NA	NA	NA
WP_044526333.1\|1234368_1234959_-	pilus assembly protein PilP	NA	NA	NA	NA
WP_044526334.1\|1234964_1235564_-	type 4a pilus biogenesis protein PilO	NA	NA	NA	NA
WP_044526335.1\|1235557_1236121_-	type IV pili associated protein	NA	NA	NA	NA
WP_044526336.1\|1236124_1237129_-	hypothetical protein	NA	NA	NA	NA
WP_044526337.1\|1237258_1237909_+	adenylate kinase	NA	NA	NA	NA
WP_044526338.1\|1237912_1240636_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_044526339.1\|1240697_1241114_-	hypothetical protein	NA	NA	NA	NA
WP_044527136.1\|1241125_1242019_-	GTPase Era	NA	NA	NA	NA
WP_044526340.1\|1242139_1243330_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_044526341.1\|1243339_1244146_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_044526342.1\|1244150_1244789_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_044526343.1\|1244792_1245926_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_044526344.1\|1245988_1246867_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_044526345.1\|1246925_1248665_+	SEL1-like repeat protein	NA	NA	NA	NA
WP_042518133.1\|1248668_1249262_-	thymidine kinase	E3SFJ8	Shigella_phage	1.7e-42	45.5
WP_044526346.1\|1249274_1249910_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_044526347.1\|1250095_1251424_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_044526348.1\|1251427_1252402_+	PhoH family protein	A0A0S0MVD6	Pseudomonas_phage	2.6e-43	44.0
WP_044526349.1\|1252491_1253442_-	hypothetical protein	D5LGY1	Escherichia_phage	4.0e-25	26.6
WP_044526350.1\|1253432_1253648_-\|tail	tail protein X	NA	NA	NA	NA
WP_044526351.1\|1253637_1253994_-\|tail	phage tail protein	NA	NA	NA	NA
WP_044526352.1\|1253990_1256297_-\|tail	phage tail tape measure protein	B9A7B3	Serratia_phage	7.0e-39	26.8
WP_149031943.1\|1256382_1256688_-	hypothetical protein	NA	NA	NA	NA
WP_044526354.1\|1256716_1257232_-\|tail	phage major tail tube protein	D4HTW2	Vibrio_phage	7.8e-07	27.5
WP_044526355.1\|1257233_1258394_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1B2LRR3	Wolbachia_phage	9.1e-88	44.2
WP_149031944.1\|1258410_1258869_-	hypothetical protein	NA	NA	NA	NA
WP_044526357.1\|1258876_1259632_-	hypothetical protein	NA	NA	NA	NA
WP_050022781.1\|1259624_1260317_-	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	7.3e-08	30.4
WP_050022782.1\|1260326_1261304_-\|tail	tail fiber protein	R4JJY3	Burkholderia_phage	1.7e-23	34.1
WP_050022783.1\|1261303_1261912_-\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	2.5e-12	28.8
WP_044526358.1\|1261904_1262717_-\|plate	baseplate J/gp47 family protein	R9TML5	Vibrio_phage	5.7e-12	24.1
WP_044526359.1\|1262709_1263048_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_044526360.1\|1263047_1263746_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_044526361.1\|1263750_1264161_-	hypothetical protein	NA	NA	NA	NA
WP_044526362.1\|1264150_1264660_-	hypothetical protein	NA	NA	NA	NA
WP_044526363.1\|1264652_1264970_-	hypothetical protein	NA	NA	NA	NA
WP_044526364.1\|1264976_1266770_-\|capsid	phage major capsid protein	K7XS73	uncultured_Mediterranean_phage	1.2e-54	27.2
WP_044526365.1\|1266753_1268166_-\|portal	phage portal protein	A0A193GYC1	Enterobacter_phage	1.4e-42	28.7
WP_044526366.1\|1268165_1268408_-	hypothetical protein	NA	NA	NA	NA
WP_044526367.1\|1268498_1270262_-\|terminase	phage terminase large subunit family protein	V5YTA4	Pseudomonas_phage	1.1e-103	36.5
WP_044526368.1\|1270242_1270434_-	hypothetical protein	NA	NA	NA	NA
WP_044526369.1\|1270436_1270688_-	hypothetical protein	NA	NA	NA	NA
WP_044526370.1\|1270674_1271043_-	hypothetical protein	NA	NA	NA	NA
WP_044526371.1\|1271167_1271725_-	hypothetical protein	NA	NA	NA	NA
WP_044526372.1\|1271717_1273013_-	ParB N-terminal domain-containing protein	K4HZA5	Acidithiobacillus_phage	1.5e-83	41.7
WP_044526373.1\|1273094_1273436_-	hypothetical protein	NA	NA	NA	NA
WP_044526374.1\|1273451_1273883_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_162483966.1\|1273879_1274038_-	hypothetical protein	NA	NA	NA	NA
WP_044526375.1\|1273998_1274628_-	hypothetical protein	NA	NA	NA	NA
WP_044526376.1\|1274640_1275468_-	helix-turn-helix domain-containing protein	A0A0R6PHP4	Moraxella_phage	4.8e-06	40.0
WP_044526377.1\|1275469_1276330_-	recombination-associated protein RdgC	NA	NA	NA	NA
WP_044526378.1\|1276326_1276617_-	hypothetical protein	NA	NA	NA	NA
WP_044526379.1\|1276613_1276838_-	hypothetical protein	NA	NA	NA	NA
WP_044526380.1\|1276834_1277113_-	hypothetical protein	NA	NA	NA	NA
WP_149031945.1\|1277183_1277423_+	hypothetical protein	NA	NA	NA	NA
WP_044526382.1\|1277630_1277858_-	hypothetical protein	NA	NA	NA	NA
WP_044526383.1\|1278031_1278592_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_044526384.1\|1278627_1279671_+	hypothetical protein	NA	NA	NA	NA
WP_044526385.1\|1279636_1280248_+	hypothetical protein	NA	NA	NA	NA
WP_044526386.1\|1280360_1281116_+	VUT family protein	NA	NA	NA	NA
WP_044526387.1\|1281132_1281483_+	hypothetical protein	NA	NA	NA	NA
WP_044526388.1\|1281499_1282522_+	hypothetical protein	NA	NA	NA	NA
1282561:1282576	attL	NA	NA	NA	NA
WP_044526389.1\|1282615_1283011_-	hypothetical protein	NA	NA	NA	NA
WP_044526390.1\|1282997_1284821_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_044526391.1\|1284835_1285150_-	hypothetical protein	NA	NA	NA	NA
WP_044526392.1\|1285245_1286376_-\|integrase	site-specific integrase	F1C5B2	Cronobacter_phage	4.8e-17	29.7
1286480:1286495	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1683183 : 1690521

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044526719.1\|1683183_1684185_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	1.9e-81	48.8
WP_044526720.1\|1684423_1685302_-	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	6.8e-43	39.0
WP_044526721.1\|1685332_1685905_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.3e-38	48.6
WP_044526722.1\|1685901_1686792_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.2e-101	61.0
WP_044526723.1\|1686916_1687966_-	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	1.4e-90	51.0
WP_044526724.1\|1687979_1689119_-	GDP-mannose 4,6-dehydratase	M1HAR7	Acanthocystis_turfacea_Chlorella_virus	7.3e-122	59.4
WP_044526725.1\|1689147_1690521_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	8.6e-53	30.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage