Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP009633 Francisella tularensis subsp. novicida U112 chromosome, complete genome 4 crisprs cas12a,cas4,cas1,cas2,csa3,DEDDh,cas9,RT,cas3 0 11 3 0

Results visualization

1. NZ_CP009633
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009633_1 658803-659424 TypeV-A,TypeI-A V-A
9 spacers
cas2,cas1,cas4,cas12a,csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009633_2 909569-909732 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009633_3 943046-943140 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009633_4 1311740-1312921 TypeII NA
16 spacers
cas4,cas2,cas1,cas9

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP009633_1 1.4|659035|26|NZ_CP009633|CRISPRCasFinder,CRT,PILER-CR 659035-659060 26 NZ_AP017297 Nostoc sp. NIES-3756 plasmid pNOS3756_2, complete sequence 50828-50853 5 0.808
NZ_CP009633_1 1.1|658839|31|NZ_CP009633|CRISPRCasFinder,CRT 658839-658869 31 MT701590 Klebsiella phage Miami, complete genome 10755-10785 6 0.806
NZ_CP009633_1 1.5|659097|29|NZ_CP009633|CRISPRCasFinder,CRT,PILER-CR 659097-659125 29 NZ_CP015592 Bacillus cereus strain AR156 plasmid pAR460, complete sequence 383654-383682 6 0.793
NZ_CP009633_1 1.5|659097|29|NZ_CP009633|CRISPRCasFinder,CRT,PILER-CR 659097-659125 29 NC_011774 Bacillus cereus G9842 plasmid pG9842_140, complete sequence 59167-59195 6 0.793
NZ_CP009633_1 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT 659227-659255 29 LC541428 Staphylococcus phage vB_SauS_JS02 DNA, complete genome 40190-40218 6 0.793
NZ_CP009633_1 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT 659227-659255 29 MN693620 Marine virus AFVG_250M617, complete genome 5016-5044 6 0.793
NZ_CP009633_1 1.9|659360|29|NZ_CP009633|CRISPRCasFinder,CRT 659360-659388 29 KP211958 Cyanophage P-TIM40, complete genome 4665-4693 6 0.793
NZ_CP009633_4 4.2|1311845|29|NZ_CP009633|CRT 1311845-1311873 29 NC_013793 Bacillus pseudofirmus OF4 plasmid pBpOF4-02, complete sequence 19936-19964 6 0.793
NZ_CP009633_1 1.1|658839|31|NZ_CP009633|CRISPRCasFinder,CRT 658839-658869 31 NC_015169 Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence 253414-253444 7 0.774
NZ_CP009633_1 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT 659227-659255 29 NC_011252 Borrelia recurrentis A1 plasmid pl23, complete sequence 6807-6835 7 0.759
NZ_CP009633_1 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT 659227-659255 29 NC_011257 Borrelia duttonii Ly plasmid pl23, complete sequence 6812-6840 7 0.759
NZ_CP009633_1 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT 659227-659255 29 NZ_CP046706 Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence 70431-70459 7 0.759
NZ_CP009633_4 4.1|1311777|31|NZ_CP009633|CRT 1311777-1311807 31 MN871480 UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome 3699-3729 7 0.774
NZ_CP009633_4 4.1|1311777|31|NZ_CP009633|CRT 1311777-1311807 31 DI373487 KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof 27848-27878 7 0.774
NZ_CP009633_4 4.1|1311777|31|NZ_CP009633|CRT 1311777-1311807 31 MN871489 UNVERIFIED: Pseudomonas phage PaZh_1, complete genome 35610-35640 7 0.774
NZ_CP009633_4 4.1|1311777|31|NZ_CP009633|CRT 1311777-1311807 31 KU521356 Pseudomonas phage KTN4, complete genome 660-690 7 0.774
NZ_CP009633_4 4.1|1311777|31|NZ_CP009633|CRT 1311777-1311807 31 NC_042060 Pseudomonas phage PA7, partial genome 27848-27878 7 0.774
NZ_CP009633_4 4.1|1311777|31|NZ_CP009633|CRT 1311777-1311807 31 NC_004629 Pseudomonas phage phiKZ, complete genome 823-853 7 0.774
NZ_CP009633_4 4.2|1311845|29|NZ_CP009633|CRT 1311845-1311873 29 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 406906-406934 7 0.759
NZ_CP009633_1 1.8|659292|32|NZ_CP009633|CRISPRCasFinder,CRT 659292-659323 32 AP014333 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C55, *** SEQUENCING IN PROGRESS *** 34196-34227 8 0.75
NZ_CP009633_4 4.1|1311777|31|NZ_CP009633|CRT 1311777-1311807 31 MT774396 CrAssphage cr53_1, complete genome 14159-14189 8 0.742
NZ_CP009633_4 4.7|1312202|34|NZ_CP009633|CRT,PILER-CR,CRISPRCasFinder 1312202-1312235 34 MT661596 Proteus phage 10, complete genome 63375-63408 8 0.765
NZ_CP009633_1 1.8|659292|32|NZ_CP009633|CRISPRCasFinder,CRT 659292-659323 32 MN693427 Marine virus AFVG_25M254, complete genome 21282-21313 9 0.719
NZ_CP009633_1 1.8|659292|32|NZ_CP009633|CRISPRCasFinder,CRT 659292-659323 32 MN693350 Marine virus AFVG_25M265, complete genome 11027-11058 9 0.719
NZ_CP009633_4 4.12|1312564|34|NZ_CP009633|CRT,PILER-CR,CRISPRCasFinder 1312564-1312597 34 NZ_CP028244 Lactobacillus plantarum strain SRCM101518 plasmid unnamed3, complete sequence 19791-19824 11 0.676
NZ_CP009633_4 4.12|1312564|34|NZ_CP009633|CRT,PILER-CR,CRISPRCasFinder 1312564-1312597 34 NZ_CP054261 Lactobacillus plantarum strain TCI507 plasmid unnamed2 4947-4980 11 0.676
NZ_CP009633_4 4.3|1311911|37|NZ_CP009633|CRT 1311911-1311947 37 NZ_CP032091 Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence 98632-98668 12 0.676

1. spacer 1.4|659035|26|NZ_CP009633|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017297 (Nostoc sp. NIES-3756 plasmid pNOS3756_2, complete sequence) position: , mismatch: 5, identity: 0.808

tagcga--tttatgaaggtcattttttt	CRISPR spacer
--acaacttttatgaaggtcattttttg	Protospacer
  .*.*  ******************* 

2. spacer 1.1|658839|31|NZ_CP009633|CRISPRCasFinder,CRT matches to MT701590 (Klebsiella phage Miami, complete genome) position: , mismatch: 6, identity: 0.806

gagaagtcatttaataaggccactgttaaaa	CRISPR spacer
cgtcaatcatttaataaggcctctgttaaaa	Protospacer
 .  *.*************** *********

3. spacer 1.5|659097|29|NZ_CP009633|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 6, identity: 0.793

agattaaaaggtaattctatcttgttgag	CRISPR spacer
agattaaaatgtaattctatttttattat	Protospacer
********* **********.**  * * 

4. spacer 1.5|659097|29|NZ_CP009633|CRISPRCasFinder,CRT,PILER-CR matches to NC_011774 (Bacillus cereus G9842 plasmid pG9842_140, complete sequence) position: , mismatch: 6, identity: 0.793

agattaaaaggtaattctatcttgttgag--	CRISPR spacer
acattaacaggtaattctatct--ttaattt	Protospacer
* ***** **************  **.*   

5. spacer 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT matches to LC541428 (Staphylococcus phage vB_SauS_JS02 DNA, complete genome) position: , mismatch: 6, identity: 0.793

aaactttcatttatgatataaagtttttt	CRISPR spacer
aaactttcatttaagatataatgttgagc	Protospacer
************* ******* ***   .

6. spacer 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT matches to MN693620 (Marine virus AFVG_250M617, complete genome) position: , mismatch: 6, identity: 0.793

aaactttcatttatgatataaagtttttt	CRISPR spacer
tcattttcatttttgatataaaggttttc	Protospacer
  *.******** ********** ****.

7. spacer 1.9|659360|29|NZ_CP009633|CRISPRCasFinder,CRT matches to KP211958 (Cyanophage P-TIM40, complete genome) position: , mismatch: 6, identity: 0.793

ttgtttgattgcttgcattgaaccttgaa	CRISPR spacer
gtattcgattgcttgcattgatccttcta	Protospacer
 *.**.*************** ****  *

8. spacer 4.2|1311845|29|NZ_CP009633|CRT matches to NC_013793 (Bacillus pseudofirmus OF4 plasmid pBpOF4-02, complete sequence) position: , mismatch: 6, identity: 0.793

tgttgagatcaacattttgctgtaaaact	CRISPR spacer
agacgagatcaacatttttctgcaaaaca	Protospacer
 * .************** ***.***** 

9. spacer 1.1|658839|31|NZ_CP009633|CRISPRCasFinder,CRT matches to NC_015169 (Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence) position: , mismatch: 7, identity: 0.774

gagaagtcatttaataaggccactgttaaaa	CRISPR spacer
gagaattcatttgataaggccacctttgcag	Protospacer
***** ******.**********. **. *.

10. spacer 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT matches to NC_011252 (Borrelia recurrentis A1 plasmid pl23, complete sequence) position: , mismatch: 7, identity: 0.759

aaactttcatttatgatataaagtttttt	CRISPR spacer
aaagtttcatttaagatataaagaaccat	Protospacer
*** ********* *********  .. *

11. spacer 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT matches to NC_011257 (Borrelia duttonii Ly plasmid pl23, complete sequence) position: , mismatch: 7, identity: 0.759

aaactttcatttatgatataaagtttttt	CRISPR spacer
aaagtttcatttaagatataaagaaccat	Protospacer
*** ********* *********  .. *

12. spacer 1.7|659227|29|NZ_CP009633|CRISPRCasFinder,CRT matches to NZ_CP046706 (Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence) position: , mismatch: 7, identity: 0.759

aaactttcatttatgatataaagtttttt	CRISPR spacer
agtaattcatttatgttattaagtttttc	Protospacer
*.   ********** *** ********.

13. spacer 4.1|1311777|31|NZ_CP009633|CRT matches to MN871480 (UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome) position: , mismatch: 7, identity: 0.774

agtttaaagtagctagaaaattca----cttttag	CRISPR spacer
ggtttaaagtaccttgaaaattcaaagtctt----	Protospacer
.********** ** *********    ***    

14. spacer 4.1|1311777|31|NZ_CP009633|CRT matches to DI373487 (KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof) position: , mismatch: 7, identity: 0.774

agtttaaagtagctagaaaattca----cttttag	CRISPR spacer
ggtttaaagtaccttgaaaattcaaagtctt----	Protospacer
.********** ** *********    ***    

15. spacer 4.1|1311777|31|NZ_CP009633|CRT matches to MN871489 (UNVERIFIED: Pseudomonas phage PaZh_1, complete genome) position: , mismatch: 7, identity: 0.774

agtttaaagtagctagaaaattca----cttttag	CRISPR spacer
ggtttaaagtaccttgaaaattcaaagtctt----	Protospacer
.********** ** *********    ***    

16. spacer 4.1|1311777|31|NZ_CP009633|CRT matches to KU521356 (Pseudomonas phage KTN4, complete genome) position: , mismatch: 7, identity: 0.774

agtttaaagtagctagaaaattca----cttttag	CRISPR spacer
ggtttaaagtaccttgaaaattcaaagtctt----	Protospacer
.********** ** *********    ***    

17. spacer 4.1|1311777|31|NZ_CP009633|CRT matches to NC_042060 (Pseudomonas phage PA7, partial genome) position: , mismatch: 7, identity: 0.774

agtttaaagtagctagaaaattca----cttttag	CRISPR spacer
ggtttaaagtaccttgaaaattcaaagtctt----	Protospacer
.********** ** *********    ***    

18. spacer 4.1|1311777|31|NZ_CP009633|CRT matches to NC_004629 (Pseudomonas phage phiKZ, complete genome) position: , mismatch: 7, identity: 0.774

agtttaaagtagctagaaaattca----cttttag	CRISPR spacer
ggtttaaagtaccttgaaaattcaaagtctt----	Protospacer
.********** ** *********    ***    

19. spacer 4.2|1311845|29|NZ_CP009633|CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.759

tgttgagatcaacattttgctgtaaaact	CRISPR spacer
gaaagagatcaagattttgctttaaaatt	Protospacer
 .  ******** ******** *****.*

20. spacer 1.8|659292|32|NZ_CP009633|CRISPRCasFinder,CRT matches to AP014333 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C55, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

tcaaaaggcaagagagacggaaataaatggac	CRISPR spacer
ccccaaggcaagagaggctgaaataaaaagaa	Protospacer
.*  ************.* ******** .** 

21. spacer 4.1|1311777|31|NZ_CP009633|CRT matches to MT774396 (CrAssphage cr53_1, complete genome) position: , mismatch: 8, identity: 0.742

agtttaaagtagctagaaaattcacttttag	CRISPR spacer
atgttaaagtagttagagaattcactaaaat	Protospacer
*  *********.****.********   * 

22. spacer 4.7|1312202|34|NZ_CP009633|CRT,PILER-CR,CRISPRCasFinder matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 8, identity: 0.765

ttacacattcagctggttctttagcattattaac	CRISPR spacer
ttaagatatcaactagttctttagcattattatc	Protospacer
*** .   ***.**.***************** *

23. spacer 1.8|659292|32|NZ_CP009633|CRISPRCasFinder,CRT matches to MN693427 (Marine virus AFVG_25M254, complete genome) position: , mismatch: 9, identity: 0.719

tcaaaaggcaagagagacggaaataaatggac	CRISPR spacer
caaaaaggcaagagagaaagaaatactggaaa	Protospacer
. *************** .******   *.* 

24. spacer 1.8|659292|32|NZ_CP009633|CRISPRCasFinder,CRT matches to MN693350 (Marine virus AFVG_25M265, complete genome) position: , mismatch: 9, identity: 0.719

tcaaaaggcaagagagacggaaataaatggac	CRISPR spacer
caaaaaggcaagagagaaagaaatactgatac	Protospacer
. *************** .******   . **

25. spacer 4.12|1312564|34|NZ_CP009633|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP028244 (Lactobacillus plantarum strain SRCM101518 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

actatttaagataactcgaccaatatttgacaaa	CRISPR spacer
tctatataagataactcgaccgataccctcttta	Protospacer
 **** ***************.***...  .  *

26. spacer 4.12|1312564|34|NZ_CP009633|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054261 (Lactobacillus plantarum strain TCI507 plasmid unnamed2) position: , mismatch: 11, identity: 0.676

actatttaagataactcgaccaatatttgacaaa	CRISPR spacer
tctatataagataactcgaccgataccctcttta	Protospacer
 **** ***************.***...  .  *

27. spacer 4.3|1311911|37|NZ_CP009633|CRT matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.676

ctagaaacttttaggaataatttacaaaattaattaa	CRISPR spacer
gccgcgcattttagaaataatttacgaaattaatgcc	Protospacer
 . * .  ******.**********.********   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 92854 : 102309 9 Staphylococcus_phage(42.86%) tRNA NA
DBSCAN-SWA_2 545572 : 558313 8 Enterobacteria_phage(16.67%) NA NA
DBSCAN-SWA_3 1705361 : 1714961 9 Klosneuvirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage