CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009715	Yersinia pestis Pestoides F chromosome, complete genome	6 crisprs	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	6	9	11	1
NZ_CP009714	Yersinia pestis Pestoides F plasmid pMT, complete sequence	0 crisprs	NA	0	0	2	0
NZ_CP009713	Yersinia pestis Pestoides F plasmid pCD, complete sequence	0 crisprs	NA	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009715_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009715_1

220557-220668

Orphan

Consensus_repeat	Method
AAAGCACATTTGAGCAGCGAGTGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009715_1

>merge|NZ_CP009715|1|220557-220668|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAGCCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCCAAAGCACATTTGAGCAGCCGAGTGAA

>NZ_CP009715|1|1|220557-220668|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAG	CCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCC
AAAGCACATTTGAGCAGCCGAGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009715.1\|WP_002210189.1\|229891_231232_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|236787
NZ_CP009715.1\|WP_002223151.1\|224137_226816_-\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP009715.1\|WP_002209487.1\|212226_213600_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NZ_CP009715.1\|WP_002210190.1\|229333_229669_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NZ_CP009715.1\|WP_002222054.1\|228349_228802_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP009715.1\|WP_002209489.1\|214708_215713_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP009715.1\|WP_002209483.1\|206322_208131_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP009715.1\|WP_011906450.1\|209135_211628_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP009715.1\|WP_002223919.1\|215963_217127_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NZ_CP009715.1\|WP_002209482.1\|204918_206247_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP009715.1\|WP_100067904.1\|220878_222233_+\|IS3-like-element-IS1661-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP009715.1\|WP_002210188.1\|231241_232075_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|183230
NZ_CP009715.1\|WP_002209488.1\|213766_214540_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NZ_CP009715.1\|WP_002209481.1\|204050_204854_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP009715.1\|WP_002209253.1\|226840_228328_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP009715.1\|WP_002209484.1\|208296_208914_-\|hemophore-HasA	unknown	unknown	gnl\|CDD\|368907
NZ_CP009715.1\|WP_002209256.1\|222687_223662_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP009715.1\|WP_002209491.1\|217500_220137_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP009715.1\|WP_002209257.1\|222295_222565_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP009715.1\|WP_002209255.1\|223661_224072_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787

Protein	Function_ID	Function_description	E-value
NZ_CP009715.1\|WP_002210189.1\|229891_231232_-\|phosphoglucosamine-mutase	gnl\|CDD\|236787	PRK10887, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP009715.1\|WP_002223151.1\|224137_226816_-\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP009715.1\|WP_002209487.1\|212226_213600_-\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NZ_CP009715.1\|WP_002210190.1\|229333_229669_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	1.73565e-24
NZ_CP009715.1\|WP_002222054.1\|228349_228802_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	9.48893e-78
NZ_CP009715.1\|WP_002209489.1\|214708_215713_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP009715.1\|WP_002209483.1\|206322_208131_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP009715.1\|WP_011906450.1\|209135_211628_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.46482e-132
NZ_CP009715.1\|WP_002223919.1\|215963_217127_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NZ_CP009715.1\|WP_002209482.1\|204918_206247_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.16318e-105
NZ_CP009715.1\|WP_100067904.1\|220878_222233_+\|IS3-like-element-IS1661-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.01643e-48
NZ_CP009715.1\|WP_002210188.1\|231241_232075_-\|dihydropteroate-synthase	gnl\|CDD\|183230	PRK11613, folP, dihydropteroate synthase; Provisional.	0
NZ_CP009715.1\|WP_002209488.1\|213766_214540_-\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.92616e-136
NZ_CP009715.1\|WP_002209481.1\|204050_204854_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.51188e-39
NZ_CP009715.1\|WP_002209253.1\|226840_228328_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP009715.1\|WP_002209484.1\|208296_208914_-\|hemophore-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	9.51098e-102
NZ_CP009715.1\|WP_002209256.1\|222687_223662_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP009715.1\|WP_002209491.1\|217500_220137_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP009715.1\|WP_002209257.1\|222295_222565_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.55817e-52
NZ_CP009715.1\|WP_002209255.1\|223661_224072_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	7.0498e-51

>NZ_CP009715.1|WP_002209491.1|217500_220137_+|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NZ_CP009715.1|WP_002223919.1|215963_217127_+|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NZ_CP009715.1|WP_002209489.1|214708_215713_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSDLHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVTHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NZ_CP009715.1|WP_002209488.1|213766_214540_-|acetylglutamate-kinase
MNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NZ_CP009715.1|WP_002209487.1|212226_213600_-|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NZ_CP009715.1|WP_011906450.1|209135_211628_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQGYSGQLAANTAETPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRSEQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NZ_CP009715.1|WP_002209484.1|208296_208914_-|hemophore-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVVDCHDMLLAA
>NZ_CP009715.1|WP_002209483.1|206322_208131_-|type-I-secretion-system-permease/ATPase
MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPTFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPEAKILNSRSGWSNGVSYGIGPARTTSSPKP
>NZ_CP009715.1|WP_002209482.1|204918_206247_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESVCYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGHIAKNKLLEMESQSTSLQARVEQSTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NZ_CP009715.1|WP_002209481.1|204050_204854_-|energy-transducer-TonB
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK
>NZ_CP009715.1|WP_100067904.1|220878_222233_+|IS3-like-element-IS1661-family-transposase
MKHPFSTRLAAVQHYLSGKATLRETARQFSVGKSPLTRWIRAFRRQGEAGLEHHLSRTYTPEFRLCVVRYMMANRCSAADASAHFNIPNETIIQNWMKRYREGGKEALNPSKTGPTMPKDKYEHDSKPFSEMTHAELEKELEYLRAENAYPKKAESPERRKGTQGAAEKTRIVQALTAEHRLSCLLCAAKLARSTYYYHASKPDGVIDDYADAVKAIGALSRRHAQRYGYRRMTVALRKEGFTLNHKTVRKLMNQHGLLSLIRRKKYRSYRADGGRASDNLLARNFTSEISGLKWCTDVTEFRVGAQKLYLSVIQDLFNNEIISWHMSERAALILTCKTLEKALKVKGRKEGLMLHSDQGWHYRTPMWRSMLVEAGIRQSMSRKGNCLDNAVMENFFSHLKAEMYHRKKYDSATVLKRDIVEYIHYYNTERISLKTGGMSPAEYRTQVEKQ
>NZ_CP009715.1|WP_002209257.1|222295_222565_-|30S-ribosomal-protein-S15
MSLSVEAKAKIVADFGRGTNDTGSSEVQVALLTAQINHLQGHFSEHKKDHHSRRGLLRMVSTRRKLLDYLKRQDVARYASLIERLGLRR
>NZ_CP009715.1|WP_002209256.1|222687_223662_-|tRNA-pseudouridine(55)-synthase-TruB
MGRPRRRGRDINGVLLLDKPLGLSSNDVLQKVKRLFSANRAGHTGALDPLATGMLPICLGEATKFSQFLLDSDKRYRVVARLGQRTDTSDAEGALISEREVNLTQAQIDTALESFRGESQQIPSMYSALKHQGKPLYEYARQGIEVEREARSITVYELLFIRWEGNDLELEIHCSKGTYIRTIIDDLGELLGCGAHVSYLRRLQVATYPSERMVTLEQLTAMVEAAQAEGRSPNPELDSLLLPMDSAVLNFPEVNLLPSVAAYVKQGQPVHVSGAPSEGMVRITEGKERNFIGIGTIAEDGRVAPKRLVVESVEVENLPVENKK
>NZ_CP009715.1|WP_002209255.1|223661_224072_-|30S-ribosome-binding-factor-RbfA
MAKEFSRSQRVSQEMQKEIALILQREIKDPRVGMATVSGIELSRDLAYAKVFVTFLNVLTDNADPDTVKNGIKALQDASGYIRTLLGKAMRLRIVPELTFAYDNSLIEGMRMSNLVSNVIKNDVERQVNPGSDEEK
>NZ_CP009715.1|WP_002223151.1|224137_226816_-|translation-initiation-factor-IF-2
MTDVTVKSLAAEIQTPVDRLVQQFADAGIKKSDVDSVTQQEKEILLAHLNREHGSVPNKLTLQRKTRSTLNIPSTGGKSKSVQIEVRKKRTYVNTPEAEQAKAEEQAQREAEEQAQREAEATAQKIAEEKAKREAEEQAKREAAEKAKRQAAEKEKVTNQQTDEKTKPAQTDKARREAEAAELKRSVEEETRRKVEEDAKRVAEEARKMAAENEGKWPEPVAEQTESADYHVTTSQHARAAEDENDAKVEGDRRSRTRGGKATKQKKGNKLSESKADREEARAVGRKGKRKPSTLQQSFNKPVVAVNRDVVIGETVTVAELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEALMSDRDIGVEAAAEHRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAANVPVVVAVNKIDKPEADPDRVKTELSQYGIQPEEWGGESQFINVSAKAGIGIDELLNAILLQAEVLELKAVRTGMANGVVIESFLDKGRGPVATVLVQQGTLNKGDIVLCGFEYGRVRAMRDELGRDITSAGPSIPVEILGLSSVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRTIA
>NZ_CP009715.1|WP_002209253.1|226840_228328_-|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRGVLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGELIMAARNICWFGDNA
>NZ_CP009715.1|WP_002222054.1|228349_228802_-|ribosome-maturation-factor-RimP
MSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDGITVDACADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTVDGKDEVFALSNIQKANLVPHF
>NZ_CP009715.1|WP_002210190.1|229333_229669_-|preprotein-translocase-subunit-SecG
MYEALLVFFLLISIGLVALIMLQQGKGADMGASFGAGASATLFGSNGSGNFMTRMTAVLATLFFVISLILGNMSSNQGQKSSEWENLGQPLKTEQTATPVAPVKPSSDIPQ
>NZ_CP009715.1|WP_002210189.1|229891_231232_-|phosphoglucosamine-mutase
MSNRKYFGTDGIRGKVGESPITPDFVLKLGWAAGKVLARHGSRKIIIGKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISASHNPFYDNGIKFFSIDGTKLPDDVEEAIEAEMEKPLTCVESAELGKANRIVDAAGRYIEFCKGTFPSELSLNELKIVVDCANGATYHIAPSVLRELGATVITIGCEPDGMNINEECGATDVRLLQERVLAEGAHVGLAFDGDGDRLMMVDHLGNKVDGDQILYIIAREGLRQGQLKGGAVGTLMSNMGLQLALKDLGIPFVRAKVGDRYVLEAMQEKGWRIGAENSGHVILLDKTTTGDGIVAGLQVLTAMVRNHMSLHDLCSGMKLLPQILVNVRFSGEHNPLKSDEVEEVTRQVEKELGGRGRVLLRKSGTEPLIRVMVEGDAEESLIAEMANRIADAVKAAG
>NZ_CP009715.1|WP_002210188.1|231241_232075_-|dihydropteroate-synthase
MHLTARGLTLDLSRPQVMGILNVTPDSFSDGGCHNNLDQALQHAQRMLSAGATLIDIGGESTRPGAAEVSEQEELDRVVPVVEALAQRFDVWLSVDTSKAAVITESAHAGAHLINDIRSLQEPGALEAAAKTGLPVCLMHMQGQPKNMQHSPYYDDLMTDINRFFQHHIERCVAAGIAKNKLLLDPGFGFGKNLAHNYQLLAHLSELHHFELPLLVGMSRKSMVGQLLNVPPQQRVIGSVACAVIAAMQGAQIIRVHDVKETVEAMCIVEATRSAKG

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Crispr_ID: NZ_CP009715_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009715_2

1798010-1798410

Orphan

Consensus_repeat	Method
AGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP009715_2

>merge|NZ_CP009715|2|1798010-1798410|PILER-CR
AGGATAGGGCGTGAGAGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCGGTCAACGCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGGAGGATAGGGCGTGAGGGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCGGTCAACGCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGCAGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCGGTCAACGCCACTCATGCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGCAGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG

>NZ_CP009715|2|1|1798010-1798410|PILER-CR
AGGATAGGGCGTGAGAGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCG	GTCAACGCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGG
AGGATAGGGCGTGAGGGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCG	GTCAACGCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGC
AGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG	GTCAACGCCACTCATGCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGC
AGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009715.1\|WP_002210142.1\|1788594_1790931_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
NZ_CP009715.1\|WP_002228200.1\|1794637_1796611_-\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
NZ_CP009715.1\|WP_002210147.1\|1794200_1794554_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP009715.1\|WP_002210421.1\|1801571_1801967_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP009715.1\|WP_002210414.1\|1804401_1805100_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP009715.1\|WP_002210151.1\|1799475_1800369_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP009715.1\|WP_002210149.1\|1796673_1797573_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NZ_CP009715.1\|WP_002228691.1\|1782127_1786585_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP009715.1\|WP_002210150.1\|1798509_1799214_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP009715.1\|WP_002210419.1\|1802551_1802947_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP009715.1\|WP_002210420.1\|1802270_1802555_-\|cell-division-protein-FtsH	unknown	unknown	gnl\|CDD\|372871
NZ_CP009715.1\|WP_002210145.1\|1792753_1793329_-\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP009715.1\|WP_002210415.1\|1804015_1804405_-\|EnvZ/OmpR-regulon-moderator-MzrA	unknown	unknown	gnl\|CDD\|236728
NZ_CP009715.1\|WP_002210140.1\|1787407_1788331_+\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NZ_CP009715.1\|WP_002210416.1\|1803409_1803790_-\|DUF1090-domain-containing-protein	unknown	unknown	gnl\|CDD\|368932
NZ_CP009715.1\|WP_002210146.1\|1793339_1793930_-\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NZ_CP009715.1\|WP_002210418.1\|1802949_1803255_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP009715.1\|WP_011193135.1\|1800499_1801486_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP009715.1\|WP_002210138.1\|1780699_1782118_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273553
NZ_CP009715.1\|WP_002210144.1\|1791821_1792547_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603

Protein	Function_ID	Function_description	E-value
NZ_CP009715.1\|WP_002210142.1\|1788594_1790931_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP009715.1\|WP_002228200.1\|1794637_1796611_-\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	0
NZ_CP009715.1\|WP_002210147.1\|1794200_1794554_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	4.17484e-53
NZ_CP009715.1\|WP_002210421.1\|1801571_1801967_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.95631e-26
NZ_CP009715.1\|WP_002210414.1\|1804401_1805100_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	7.94641e-51
NZ_CP009715.1\|WP_002210151.1\|1799475_1800369_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.28073e-52
NZ_CP009715.1\|WP_002210149.1\|1796673_1797573_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NZ_CP009715.1\|WP_002228691.1\|1782127_1786585_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP009715.1\|WP_002210150.1\|1798509_1799214_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.10509e-65
NZ_CP009715.1\|WP_002210419.1\|1802551_1802947_-\|membrane-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	1.13501e-54
NZ_CP009715.1\|WP_002210420.1\|1802270_1802555_-\|cell-division-protein-FtsH	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	1.41406e-22
NZ_CP009715.1\|WP_002210145.1\|1792753_1793329_-\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.95051e-112
NZ_CP009715.1\|WP_002210415.1\|1804015_1804405_-\|EnvZ/OmpR-regulon-moderator-MzrA	gnl\|CDD\|236728	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA.	3.4571e-56
NZ_CP009715.1\|WP_002210140.1\|1787407_1788331_+\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	6.23198e-179
NZ_CP009715.1\|WP_002210416.1\|1803409_1803790_-\|DUF1090-domain-containing-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	1.29686e-29
NZ_CP009715.1\|WP_002210146.1\|1793339_1793930_-\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	2.90112e-140
NZ_CP009715.1\|WP_002210418.1\|1802949_1803255_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	6.65807e-40
NZ_CP009715.1\|WP_011193135.1\|1800499_1801486_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP009715.1\|WP_002210138.1\|1780699_1782118_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0
NZ_CP009715.1\|WP_002210144.1\|1791821_1792547_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	1.31484e-142

>NZ_CP009715.1|WP_002210149.1|1796673_1797573_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQHDRAVISASTLYVVPTPIGNLGDITHRALEVLKGVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKADQLLAKLQEGQSIALVSDAGTPLINDPGYHLVRRCREAGIRVVPLPGACAAITALSAAGLASDRFCYEGFLPAKTKGRKDTLQALIEEPRTLIFYESTHRLLESLQDMVTVLGPQRYVVLARELTKTWESIHGAPVGELLAWVKEEETRRRGEMVLIVEGHKVQSDDALPADALRTLALLQKELPLKKAAALAAEIHGVKKNALYKYALEQQQGDVETEEDDIQQ
>NZ_CP009715.1|WP_002228200.1|1794637_1796611_-|penicillin-binding-protein-activator
MLSSTFVRSKAGLVPVILAALILAACTGDAPQTPPPVNIQDEASANSDYYLQQLQQSSDDNKADWQLLAIRALLREAKVPQAAEQLSTLPANLSDTQRQEQQLLAAELLIAQKNTPAAADILAKLEATQLSANQKVRYYQAQIAANQDKATLPLIRAFIAQEPLLTDKAHQDNIDGTWQSLSQLTPQELNTMVINADENVLQGWLDLLRVYQDNKQDPELLKAGIKDWQTRYPQNPAAKNLPTALTQISNFSQASTAKIALLLPLSGPAQVFADAIQQGFTAAQNGSAVTASVPVTPNVTESSPTDTAAVVSDDTPATLPAPVPPPVVTNAQVKIYDTNTQPLAALLAQAQQDGATLVVGPLLKPEVEQLSATPSTLNILALNQPEASNNSPNICYFALSPEDEARDAAHHLWEQQKRMPLLLVPRGALGERIAKAFADEWQKQGGQTVLQQNFGSTTELKQSINSGAGIRLTGTPVSVSNVAAAPASVTIAGLTIPAPPIDAPVVSTSSSGNIDAVYIIATPSELTLIKPMIDMATSSRSKPALFASSRSYQAGAGPDYRLEMEGIQFSDIPLMAGSNPALLQQASAKYANDYSLVRLYAMGIDAWALANHFSEMRQIPGFQVKGVTGDLTASSDCVITRKLPWLQYRQGMVVPLA
>NZ_CP009715.1|WP_002210147.1|1794200_1794554_-|YraN-family-protein
MSQRDTGAHYENLARRHLERAGLVFQAANVAFRGGEIDLIMRDGDAWVFVEVRFRRNDLFGGAAASITPRKQQRLHLAAAVWLAQRGASFATTSCRFDVVAITGNQLEWLPNAFNTD
>NZ_CP009715.1|WP_002210146.1|1793339_1793930_-|DnaA-initiator-associating-protein-DiaA
MLERIKGCFTESIQTQIAAAEALPDAISCAAMALVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNADNVVLTAITNDRLHDEVYAKQVRALGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPSHRGARVQELHMLTVNCLCDLIDNTLFPHQND
>NZ_CP009715.1|WP_002210145.1|1792753_1793329_-|divisome-associated-lipoprotein-YraP
MKVGYIFAMLFSTLLLQGCVGAVVVGSAAVATKTATDPRTIGTQVDDGTLEARVVNALSKDKEIKSQTRFVVTAYQGKVLLTGQTPSAELSNRAKQIASGVDGVTEVYNEMRLGKPVDLSTASMDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQQEAQSAAQIASKVSGVKHVTTAFTIVK
>NZ_CP009715.1|WP_002210144.1|1791821_1792547_+|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MISVRRGFSQLWYWGKRGVIGIIALWMAGILIFAFLPVPFSMVMIERQLGAWLTGDFAYVAHSDWVPMDEISPYMALAVMAAEDQKFPDHWGFDVGAIESALSHNQRNQKRIRGASTLSQQTAKNVFLWDGRSWVRKGLEVGLTAGIELIWTKRRILTVYLNIAEFGNGIFGVEAAARHFFNKPASKLSASEAALLAAVLPNPLRFKVNAPSGYVISRQQWILRQMHQLGGKTFLQENTLD
>NZ_CP009715.1|WP_002210142.1|1788594_1790931_+|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MKQIRVLAQYYVDLMVKLGLVRFSLLLASALVLLAMVVQMAVTFVLRGSVETLDLVRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNKQLTENITQLNQEIVEREKAEKAHLQVVDKLKEEMGHREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTELDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKSTQGVGSCFTLTIKAPAVQEASNAPSGDDMPLPALHVLLVEDIELNVIVARSVLEKLGNSVDVAMNGHDALAMFNPEDFDLVLLDIQLPDMSGLDIARQIRAEYGKQSLPPLVALTANVLKDKKEYLDAGMDDVLSKPLSVPALTAMIKQFWDSKPSSAVQKQEHKVMQTHESLLDTTMLEQYIDLVGPQLIHQSLEMFEQMMPGYLAVLDSNMTARDQKGITEEAHKIKGAAGSVGLRHIQQLAQQIQTPTLPAWWDNVQDWVDELKLEWRNDVQVLREWAAEVEKK
>NZ_CP009715.1|WP_002210140.1|1787407_1788331_+|TIGR01212-family-radical-SAM-protein
MQLQQLVNMFGADLQRRYGEKIHKLTLHGGFSCPNRDGTLGRGGCTFCQVASFADEQMQQQSITQQLAIQAKKANRANRYLAYFQAYTSTYAEVNALAAMYQQALCEADIVGLCVGTRPDCVPDAVLDLLSSYQQQGYEVWLELGLQTANDKTLKRINRGHDFACYQQTARRARARGLKVCCHLIVGLPGEDRAQGRETLEKVVTTGVDGIKLHPLHIVEGSTMAKAWRAGRLTALALEDYVLTAGEMIRHTPAEVVYHRISASARRPTLLAPLWCENRWTGMNELNNYLLQHGVQGTAIGDAYCYR
>NZ_CP009715.1|WP_002228691.1|1782127_1786585_-|glutamate-synthase-large-subunit
MLYDQSQERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQKPDHFFRMVAEERGWRLAKNYAVGMMFLSQDEELAKASRRIVEEELQNETLSIVGWREVPTNPDVLGEIALSSLPRIEQIFVNAPAGWRSRDMERRLFVARRRIEKRISDKDFYACSFSNLVTIYKGLCMPADLPRFYLDLADLRLESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGEINTIAGNRQWAKARAYKFKTPLIPDLQDAAPFVNETGSDSSSLDNMLELFLSGGMDLIRAMRLLVPPAWQNNPDMDTDLRAFFDFNSMHMEPWDGPAGIVMSDGRYAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVGPGELMVIDTRSGKILHSAETDNDLKSRHPYKEWMEKNVKRLVPFEDLPEEQVGSRQLDDSQLETYQKQFGYSNEELDQIIRVLGENGQEATGSMGDDTPFAVLSSGPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFQQLTTLEGEHYRADRLDLTFNPAENDLEQAVLSLCDEAERKVRDGAVMLVLSDRAIAPNRLPVPAPMAVGAIQTRLVDKSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYESLAKLVDSQAIDKKYRDVMLNYRNGINKGLYKIMSKMGISTVASYRCAKLFEAVGLHRDLSDLCFQGVVSRIGGASFSDFQQDLQNLSKRAWLKRKPLDQGGLLKFVHNGEYHAYNPDVVSTLQKAVHSGEYSDYQAYAKLVNERPIATLRDLLAIKPQGTPIPVDQVEPAESLFKRFDTAAMSIGALSPEAHESLAIAMNSLGGFSNSGEGGEDPARYGTNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIVKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRRDHYHGLPERVVNYFHFIARETREIMAELGVSQLVDLIGRTDMLLELDGISAKQNKLDLSPMLKTATPHPGKALYCTESNPPFDKGLLNKELLSQAEPYIEAKQSKTFYFDIRNTDRSVGAALSGAIATKHGDQGLATDPIKAYFSGTAGQSFGVWNAGGVELMLTGDANDYVGKGMAGGRIAVRPPVGSNFRSHEASIIGNTCLYGATGGKLFAAGRAGERFAVRNSGAITVVEGIGDNGCEYMTGGIVCVLGRTGINFGAGMTGGFAYVLDEDGEFRKRVNPELVEVLDVEQLAIHEEHLRGLITEHVQLTGSSRGEEILANWPEWVTKFALVKPKSSDVKALLGHRSRSAAELRVQAQ
>NZ_CP009715.1|WP_002210138.1|1780699_1782118_-|FAD-dependent-oxidoreductase
MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSETQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIMEAADLAHQTNSLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYISDKAIAMGWKPDMSHVHPTGKRVAVIGAGPAGLACADVLARNGVQAVVFDRHPEIGGLLTFGIPAFKLEKEVMIKRRKIFSEMGIEFQLNTEVGKDITMEALLKDYDAVFLGVGTYQSMRGGLENEEANGVYDALPFLIANTKQLMGYEATAHEPYINMQGKRVVVLGGGDTAMDCVRSSIRQGATDVVCAYRRDEVNMPGSKREVKNAREEGVEFKFNLQPLSIEVNSNGKVCGVRMVRTQLGAPDAQGRRMAEQIPGSEHVLPADAVVMAFGFRPHSMEWLAAHDVKLDKQGRVIAPESTDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNYLEV
>NZ_CP009715.1|WP_002210150.1|1798509_1799214_-|pirin-family-protein
MITCRTAEQCGQADFGWLQARYTFSFGHYFDPTLLGYASLRVLNQEVLAPGAAFQPRTYPQVDILNLILQGEAEYRDSLGNHVHAKTGDALLFSPQQGVSYSEHNLSANKSLTRIQLWLNACPERESAPTQHQRLSTRPVQLLASPAGEQGSLQLRQQMWIHHLALAAGEQQKMPLHGHRAYLQSIHGTVDATGPQTGTSQRLTCGDGAFVEEEQHLVIKAITPLRALLIDLPV
>NZ_CP009715.1|WP_002210151.1|1799475_1800369_+|LysR-family-transcriptional-regulator
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHITIVSEALSPAWKLFPLIDKLALKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASSEINSRKLYKVTSVYVASPDHPIHQEPEPLSELTRVKYRGIAVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLGVATMPYEMVEKDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLREIPKLLGK
>NZ_CP009715.1|WP_011193135.1|1800499_1801486_-|glutathione-S-transferase-family-protein
MGQLINGVWKDVWYDTQSTGGHFKRSTAQFRNWVTTDGQAGPQGKGGFNAEAHRYHLYVSLACPWAHRALLMRTLKGLESLISVSVVHPLMQENGWTFSSDFPAATGDALYHLDYLYQLYLRAAPDYSGRVTVPVLWDKQQQTVVSNESADIIRMFNNAFDDVGAKAGDYYPTALRNDIDDINGWVYDQVNNGVYKAGFATTQEAYDEAVGTLFSALDRLEQILGQHRYLTGNQLTEADLRLWTTLVRFDPVYVTHFKCDKRRISDYPNLYGFLRDIYQMPGIAETVDFAHIRTHYYRSHGTINPYGIISIGPQQNLLEPHDRANRFV
>NZ_CP009715.1|WP_002210421.1|1801571_1801967_-|DoxX-family-protein
MNKLQDTGLLVARILMPIIFIVAGYGKMGDAYAGTQQYMQAMGVPGFFLPLTILLEFGGGLAILFGFLTRTTSLFIAGFTLLTAFIFHTDFTDSTNQLMFMKNLSIAGGFLVLAMAGPGGFSIDRLLGKKW
>NZ_CP009715.1|WP_002210420.1|1802270_1802555_-|cell-division-protein-FtsH
MSRHQLALEKEALLREIQQQRLDLADSAARWVEVTAPFDRGWAQIVSMRKYLIAGGSLVALYSVRHPSKLLRWSRRAVSTWSTLQLFRRTFLSR
>NZ_CP009715.1|WP_002210419.1|1802551_1802947_-|membrane-protein
MAEQPRTQGPAKGVLDTVHRIATIVVGIVETRVRLAVIELEEEKATLVQLLMMAGITLLLTAFGLMSLLVLVIWAIDPAYRLVALGTTTAVLLILALIGVIWTLTKVRHSTLLGSTRKQLETDRELLEKDH
>NZ_CP009715.1|WP_002210418.1|1802949_1803255_-|DUF883-domain-containing-protein
MPQDKTSEHLRAELKSLADTLEEVLQSSTDKPKAELDKLRAKAESALKDTRVRLSETSDKIAAQTKEIADKADNYVHDNPWTGVGIGAAVGVVLGVLLSRR
>NZ_CP009715.1|WP_002210416.1|1803409_1803790_-|DUF1090-domain-containing-protein
MLLRRSLLLALPLITFCGFATAASDNECDIKAKEIQQQIDYAKQHGNTRRAAGLETALKEVKTHCTEESLQAERQKKIRQKQHNVTERQQELKEAQQKGDAGKIAKQQKKLAEAQAELQQAQSQQH
>NZ_CP009715.1|WP_002210415.1|1804015_1804405_-|EnvZ/OmpR-regulon-moderator-MzrA
MINFRGRFGRPLWHYLVLPVVLLLLAVILLTPMIVQTESTLKIRPNQQGLSLPDGFYLYQHLNGRGIHIKSIIPENDSLVVSLEFPEQQMQAIEVLQDVLPAGYAIVASESKKRHRLLPVFRSNQQNLG
>NZ_CP009715.1|WP_002210414.1|1804401_1805100_-|DedA-family-protein
MDIIKELLHALWAQDYETLADPSLVWAIYLLLFVILFLENGLLPAAFLPGDSLLILVGVLIAKGAMSFPVTLVVLTTAASLGCWVSYIQGRWLGNTKVVQGWLSHLPAHYHQRAHNLFHRHGLSALLVGRFLAFVRTLLPTIAGLSGLDNARFQFFNWMSGLLWVLILTTMGFAFGKTPVFLRYEDEVMFVLMLLPLALLVIGLFGSLYVLWRKKNATPAKVSHDNKKGKSE

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Crispr_ID: NZ_CP009715_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009715_3

2420683-2420804

Orphan

Consensus_repeat	Method
CTTAATGCCAATATTAATCGACATAATCAATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009715_3

>merge|NZ_CP009715|3|2420683-2420804|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTGTAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCTCTTAATGCCAATATTAATCGATATAATCAATTG

>NZ_CP009715|3|2|2420683-2420804|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTG	TAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCT
CTTAATGCCAATATTAATCGATATAATCAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009715.1\|WP_002213052.1\|2411523_2412714_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|185082
NZ_CP009715.1\|WP_002213030.1\|2423441_2424179_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NZ_CP009715.1\|WP_002213054.1\|2411145_2411463_-\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|184526
NZ_CP009715.1\|WP_002213039.1\|2417112_2419530_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366708
NZ_CP009715.1\|WP_011906264.1\|2424194_2425433_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NZ_CP009715.1\|WP_002221095.1\|2406866_2408921_+\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|182930
NZ_CP009715.1\|WP_002213049.1\|2412807_2413086_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|184675
NZ_CP009715.1\|WP_002213024.1\|2426901_2427690_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP009715.1\|WP_002213017.1\|2428254_2428503_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851
NZ_CP009715.1\|WP_002213026.1\|2425425_2426145_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP009715.1\|WP_002213025.1\|2426146_2426899_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235936
NZ_CP009715.1\|WP_002213038.1\|2419683_2420430_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP009715.1\|WP_002228570.1\|2427776_2428217_+\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NZ_CP009715.1\|WP_002213034.1\|2421642_2422167_+\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP009715.1\|WP_002213046.1\|2413137_2413467_-\|sulfurtransferase-TusE	unknown	unknown	gnl\|CDD\|225472
NZ_CP009715.1\|WP_002213036.1\|2421160_2421379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009715.1\|WP_002213058.1\|2409624_2410305_-\|DUF2057-family-protein	unknown	unknown	gnl\|CDD\|179619
NZ_CP009715.1\|WP_002213032.1\|2422156_2423440_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NZ_CP009715.1\|WP_002213056.1\|2410620_2411037_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP009715.1\|WP_002213060.1\|2408981_2409446_-\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969

Protein	Function_ID	Function_description	E-value
NZ_CP009715.1\|WP_002213052.1\|2411523_2412714_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	gnl\|CDD\|185082	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI.	0
NZ_CP009715.1\|WP_002213030.1\|2423441_2424179_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.26541e-68
NZ_CP009715.1\|WP_002213054.1\|2411145_2411463_-\|heat-shock-protein-HspQ	gnl\|CDD\|184526	PRK14129, PRK14129, heat shock protein HspQ; Provisional.	3.64231e-72
NZ_CP009715.1\|WP_002213039.1\|2417112_2419530_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	1.41205e-31
NZ_CP009715.1\|WP_011906264.1\|2424194_2425433_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	3.55303e-141
NZ_CP009715.1\|WP_002221095.1\|2406866_2408921_+\|DNA-helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	0
NZ_CP009715.1\|WP_002213049.1\|2412807_2413086_+\|acylphosphatase	gnl\|CDD\|184675	PRK14426, PRK14426, acylphosphatase; Provisional.	1.02172e-54
NZ_CP009715.1\|WP_002213024.1\|2426901_2427690_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.49415e-40
NZ_CP009715.1\|WP_002213017.1\|2428254_2428503_+\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09
NZ_CP009715.1\|WP_002213026.1\|2425425_2426145_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35
NZ_CP009715.1\|WP_002213025.1\|2426146_2426899_+\|enoyl-CoA-hydratase	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	2.57932e-133
NZ_CP009715.1\|WP_002213038.1\|2419683_2420430_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NZ_CP009715.1\|WP_002213034.1\|2421642_2422167_+\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	1.09929e-42
NZ_CP009715.1\|WP_002213046.1\|2413137_2413467_-\|sulfurtransferase-TusE	gnl\|CDD\|225472	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism].	2.4785e-71
NZ_CP009715.1\|WP_002228570.1\|2427776_2428217_+\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NZ_CP009715.1\|WP_002213058.1\|2409624_2410305_-\|DUF2057-family-protein	gnl\|CDD\|179619	PRK03641, PRK03641, DUF2057 family protein.	4.09411e-122
NZ_CP009715.1\|WP_002213032.1\|2422156_2423440_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.93328e-136
NZ_CP009715.1\|WP_002213056.1\|2410620_2411037_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.53332e-71
NZ_CP009715.1\|WP_002213060.1\|2408981_2409446_-\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.55286e-93

>NZ_CP009715.1|WP_002213038.1|2419683_2420430_-|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NZ_CP009715.1|WP_002213039.1|2417112_2419530_-|GNAT-family-N-acetyltransferase
MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGLLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQLAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVKEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQPGANN
>NZ_CP009715.1|WP_002213046.1|2413137_2413467_-|sulfurtransferase-TusE
MLEFEGRIIDTDAQGYLKNSTDWSEALAPVLAEQEGITLTEPHWEVVRFVRAFYQEFNTSPAIRMLVKAMAQKYGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
>NZ_CP009715.1|WP_002213049.1|2412807_2413086_+|acylphosphatase
MSKIYIVAYVYGVVQGVGFRYSTQRQAQQLGVTGYAKNCDDGSVEVVASGNPQAVERLMEWIRQGGPRGARVDRLLTEPYPPTPFETFSIRY
>NZ_CP009715.1|WP_002213052.1|2411523_2412714_-|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI
MTVRLILAKGREKSLLRRHPWIFSGAVQRLEGDALSGETIDILDSQGKWLARAAYSPESQILARVWTFQQDEVIDCAFFIRRLQQAQNWRDWLAQRDGLNGYRLIAGESDGLPGITIDRFQNFLVLQLLSAGAEYQRETLVSALQHCYPECSIYDRSDVSVRKKEGLPLTQGLICGEMPPALLPISENGMQLFVDIQQGHKTGFYLDQRDSRLAARNYANGRRVLNCFSYTGAFAVAALMGNCQQVISVDTSQSVLDIAKQNIELNQLDLSKTEFVRDDVFQLLRSYRAQGEKFDLIIMDPPKFVENKSQLASACRGYKDINMLAIQLLRPGGILLSFSCSGLMPVDLFQKILADAALDAGHDIQFIEQFRQAADHPVIAAYPEGLYLKGFACRVM
>NZ_CP009715.1|WP_002213054.1|2411145_2411463_-|heat-shock-protein-HspQ
MIASKFGIGQQVRHSLHGYLGVVIDIDPEYSLAPPEPDEVANNKTLRSSPWYHVVIEDDDGQPVHTYLAEAQLTYEDVDAHPEQPSLDELAASIRHQLQAPHLRN
>NZ_CP009715.1|WP_002213056.1|2410620_2411037_+|CoA-binding-protein
MHDKDIADILKKVKTIALVGASDIPSRPSYRVMAYLLQQGYQVTPVNPKLAGELLLGQLVYAELADIPHAIDMVDVFRNSDAAYCIAQDAIAIGAKVLWLQIGVINEQAAILATDAGLQVVMDRCPKIELPRLGLEKG
>NZ_CP009715.1|WP_002213058.1|2409624_2410305_-|DUF2057-family-protein
MKLGLVAGMLAVCFSFSSVAMTLKLTPEIDLLVVDGKNMSGSLLKGADSLELNSGMHQILFKVIKPLPTDPLVLYSSPPLIVVFNAHNTRSVAIKLPVINTLRDGHQFSKNPLYQLIGDNGHPLSVRHDVLRQDHLNNSTTLETVMAAYNVGKYNASVPAFAAIPPSPVSAVPGTTIPVAGVNTPHKTASLQGENVTEQMLQYWFLQANPETQKRFLIWAKKQPIH
>NZ_CP009715.1|WP_002213060.1|2408981_2409446_-|methylglyoxal-synthase
MELTTRTIAARKHIALVSHDHCKKSLLAWVMENRDLLAQHELYATGTTGNLVQKATGIDVHCLLSGPMGGDQEVGALISEKKIDILIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNRSTADFLIGSTLFSSEVTIAIPDYDRYMQQRLDLK
>NZ_CP009715.1|WP_002221095.1|2406866_2408921_+|DNA-helicase-IV
MELKATSFGKHLSQHPYNRVRLLNAGIEVCGDKHQYLIPFNQLVSIQCKRGIVWGELEFELPQQKVVRLHGTEWQETQHFYHYLLGVWQQWSEEMSQVCAEVLHKQVESIKRIEQQDKWFKRSELGQIQVMIREAFSALPMPVERLAAFESCRADYECCLRWLQQGRHSVERCNQQWTARMLEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKKAQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLMRMYGGSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQLEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPDAEERRLLYVAITRAKHQVWLLQDTARPSIFVSQLSELGALVQRKP
>NZ_CP009715.1|WP_002213036.1|2421160_2421379_+|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NZ_CP009715.1|WP_002213034.1|2421642_2422167_+|beta-hydroxyacyl-ACP-dehydratase
MKNTELNFLKTNFLFNQDITNELNTSFGQDIIKKMIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NZ_CP009715.1|WP_002213032.1|2422156_2423440_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPEYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLIFEQAEHAKNRGAKIYAELLGASVNSDANHLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNVKKEVNIFLNNSFGMGGINSASLFSRYHG
>NZ_CP009715.1|WP_002213030.1|2423441_2424179_+|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEAILFLVAKESSYVNGAVFNVTGGIDWVY
>NZ_CP009715.1|WP_011906264.1|2424194_2425433_+|hydroxymethylglutaryl-CoA-synthase-family-protein
MNSIGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLLWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NZ_CP009715.1|WP_002213026.1|2425425_2426145_+|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NZ_CP009715.1|WP_002213025.1|2426146_2426899_+|enoyl-CoA-hydratase
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLELLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NZ_CP009715.1|WP_002213024.1|2426901_2427690_+|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQAFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NZ_CP009715.1|WP_002228570.1|2427776_2428217_+|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NZ_CP009715.1|WP_002213017.1|2428254_2428503_+|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES

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Crispr_ID: NZ_CP009715_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009715_4

2546397-2546725

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

5 spacers

DEDDh

The CRISPR arrays of NZ_CP009715_4

>merge|NZ_CP009715|4|2546397-2546725|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAAACGAATTGAAAAATCAGAGTCCCAGCCTGACAGTTCACTGCCGCACAGGCAGCTTAGAAAGTTTAACCAAGCGCAGCCAAACATGATTGCCAAGTTCACTGCCGCACAGGCAGCTTAGAAAATGTTCGACGATTTATTTTATTTGTATTTCAGGTTCACTGCCGCACAGGCAGCTTAGAAAATTTATTAAAGATGCTGACAAAAAGAACTTAAGTTCACTGCCGCACAGGCAGCTTAGAAAGTCAACGCTTCACTCCCTGCGCGGGGTATAACGTTCACTGCCGCACAGGCAGCCCAATAA

>NZ_CP009715|4|2|2546397-2546665|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACGAATTGAAAAATCAGAGTCCCAGCCTGACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTAACCAAGCGCAGCCAAACATGATTGCCAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP009715|4|3|2546397-2546725|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACGAATTGAAAAATCAGAGTCCCAGCCTGACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTAACCAAGCGCAGCCAAACATGATTGCCAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCAACGCTTCACTCCCTGCGCGGGGTATAAC
GTTCACTGCCGCACAGGCAGCCCAATAA

>NZ_CP009715|4|1|2546397-2546725|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACGAATTGAAAAATCAGAGTCCCAGCCTGACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTAACCAAGCGCAGCCAAACATGATTGCCAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCAACGCTTCACTCCCTGCGCGGGGTATAAC
GTTCACTGCCGCACAGGCAGCCCAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009715.1\|WP_002231208.1\|2538025_2538073_-\|his-operon-leader-peptide	unknown	unknown	unknown
NZ_CP009715.1\|WP_002217522.1\|2550025_2550343_+\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NZ_CP009715.1\|WP_002211916.1\|2559012_2559855_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP009715.1\|WP_157131899.1\|2539430_2539721_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374732
NZ_CP009715.1\|WP_002211917.1\|2559886_2561164_+\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NZ_CP009715.1\|WP_002211896.1\|2536843_2537743_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NZ_CP009715.1\|WP_025471041.1\|2541101_2541824_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009715.1\|WP_002211895.1\|2535508_2536840_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NZ_CP009715.1\|WP_002211900.1\|2540109_2541105_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009715.1\|WP_002216388.1\|2551884_2555037_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP009715.1\|WP_002211911.1\|2556061_2557366_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP009715.1\|WP_002209743.1\|2550713_2551922_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NZ_CP009715.1\|WP_002211902.1\|2544510_2545902_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP009715.1\|WP_002211905.1\|2548482_2549592_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187547
NZ_CP009715.1\|WP_002216393.1\|2558224_2558965_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
NZ_CP009715.1\|WP_002216312.1\|2542960_2544052_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP009715.1\|WP_002211894.1\|2534357_2535506_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234972
NZ_CP009715.1\|WP_002211912.1\|2557374_2557797_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP009715.1\|WP_002211898.1\|2538448_2539276_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP009715.1\|WP_011906252.1\|2546759_2548190_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979

Protein	Function_ID	Function_description	E-value
NZ_CP009715.1\|WP_002217522.1\|2550025_2550343_+\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	5.26004e-59
NZ_CP009715.1\|WP_002211916.1\|2559012_2559855_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	8.96038e-107
NZ_CP009715.1\|WP_157131899.1\|2539430_2539721_-\|hypothetical-protein	gnl\|CDD\|374732	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein. Tai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein. The effector is Tae4, pfam14113.	4.0065e-14
NZ_CP009715.1\|WP_002211917.1\|2559886_2561164_+\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NZ_CP009715.1\|WP_002211896.1\|2536843_2537743_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.63843e-161
NZ_CP009715.1\|WP_025471041.1\|2541101_2541824_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	3.07812e-87
NZ_CP009715.1\|WP_002211895.1\|2535508_2536840_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NZ_CP009715.1\|WP_002211900.1\|2540109_2541105_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.22935e-72
NZ_CP009715.1\|WP_002216388.1\|2551884_2555037_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	1.47456e-126
NZ_CP009715.1\|WP_002211911.1\|2556061_2557366_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17308e-74
NZ_CP009715.1\|WP_002209743.1\|2550713_2551922_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.39969e-152
NZ_CP009715.1\|WP_002211902.1\|2544510_2545902_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.72025e-45
NZ_CP009715.1\|WP_002211905.1\|2548482_2549592_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89947e-61
NZ_CP009715.1\|WP_002216393.1\|2558224_2558965_+\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.05065e-117
NZ_CP009715.1\|WP_002216312.1\|2542960_2544052_+\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP009715.1\|WP_002211894.1\|2534357_2535506_-\|histidinol-phosphate-transaminase	gnl\|CDD\|234972	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP009715.1\|WP_002211912.1\|2557374_2557797_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	5.0494e-57
NZ_CP009715.1\|WP_002211898.1\|2538448_2539276_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.54107e-68
NZ_CP009715.1\|WP_011906252.1\|2546759_2548190_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0

>NZ_CP009715.1|WP_002211902.1|2544510_2545902_+|APC-family-permease
MAHDATVAVGTNQTGTNNRVQLRKTLTLVQVVMMGLAYLQPMTIFDTFGIVSGLTDGHVATSYAIALIAVLFTAVSYGKLVKRFPSAGSAYTYAQKSISPNVGFMVGWSSLLDYLFMPMINILLAKIYLEAIFPGVPSWIFVGALVSLMTLFNLRGINIVANLNSVIVVVQVAIMVVFMGLLIHGVYQGEGAGTLVSARPFYSENAHLVPMITGATILCFSFLGFDGISSLSEETPNAGKVIPKAIFLTALIGGIIFIAVSYCLQLYFPDISRFTDPEASQPEIMLFVAGKFFQSVILCFSCVTVLASGMAAHAGVSRLLYVMGRDGVFPEKVFGYVHPKWRTPAINVLLVGGVALSAISFDLVTATALINFGALVAFTFVNLSVIAQFYVRERRNSTFKDHFNYLILPMIGAGTVGVLWVNLESSSMTLGLVWGAIGLSYMVWKTRAFRRALPQFTEEPAQL
>NZ_CP009715.1|WP_002216312.1|2542960_2544052_+|oxidoreductase
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>NZ_CP009715.1|WP_025471041.1|2541101_2541824_-|sugar-ABC-transporter-ATP-binding-protein
MRDISLTLHQGEILGIAGLAGAGKTELCKALFGDTPSTLERGELSGKAWRPRSPDRSVAQGLALVPEERRKEGIFIDEGIPMNLSVAADDSFSRWSLFSRRQELSWAKELIERLGIRTSSPQQKLAHLSGGNQQKVAHLSGGNQQKVAIGKWLRGDAQVLIFDEPTKGVDIKAKQDLFSLIDQLAQQGKGIIYASGEFSELVGLCDRICVLWDGRIVAELNAAEVDEETLLLFSTGGTPQ
>NZ_CP009715.1|WP_002211900.1|2540109_2541105_-|ABC-transporter-permease
MSKELPLPDVQPWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAMALALTYIQKR
>NZ_CP009715.1|WP_157131899.1|2539430_2539721_-|hypothetical-protein
MQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSAIKDKYTRHI
>NZ_CP009715.1|WP_002211898.1|2538448_2539276_+|SDR-family-oxidoreductase
MKKVAIIGLGWLGMPLAQSLSRRGIDVVGSKTTPDGVDAARMSGINCYPLVLTPELICEPDDLAQLMAVDALVITLPASRTTAGGDHYFQAVQQVVDSALAFGVPRIIFTSSTSVYGETRGRIKESSPLQPVTVAGKTLMALEQWLHQLPHTSVDILRLAGLVGTDRHPGRFLAGKTGVKGGSQGVNLVHQEDVIAAIELLLNRPKGGHLYNLCAPIHPRKRDFYPACARALQLTPPEFAVEEQEGANREIDGSKICSELGFEYLYPDPSRMPLN
>NZ_CP009715.1|WP_002231208.1|2538025_2538073_-|his-operon-leader-peptide
MNRVQFNHHHHHHPD
>NZ_CP009715.1|WP_002211896.1|2536843_2537743_-|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESQELLSRCGIKINLQQQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGDDPRYFTLRRLDFGGCRLSLAAPLDAEYTGPQCLQDTRIATSYPHILKQYLDKQGVRFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMSVDKQQLIDRLMTRIQGVIQARESKYIMMHAPSERLDEIITLLPGAERPTILPLAGDKSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NZ_CP009715.1|WP_002211895.1|2535508_2536840_-|histidinol-dehydrogenase
MQPTNFNTLINWQQCSEEQQKALLSRPAINASERITAAVSDILDRVKAEGDSALRDFSQRFDHVQVADIRITASEIAAASARLSDDVKHAMAQAVRNIEIFHNAQKMPVVDVETQPGVRCQQITRPIASVGLYIPGGSAPLPSTVLMLGTPARIAGCQRVVLCSPPPIADEILYAAQLCGIQEVFQIGGAQAIAAMAFGSESVPKVHKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPAFIAADLLSQAEHGPDSQVILLTPDAAIAQAVAVEVEQQLALLSRADIARQALESSRLIVTNDLQQCIDISNAYGPEHLILQIRQPEEIIDQIDNAGSVFMGDWSPESAGDYASGTNHVLPTYGYTSTYSSLGLADFVKRMTVQQLTPQGLLGLASTIETLAQAEQLTAHKNAVTLRVTALNNALTAVNKE
>NZ_CP009715.1|WP_002211894.1|2534357_2535506_-|histidinol-phosphate-transaminase
MSQSNNVTDLARANIRALTPYMSARRLGGNGDVWLNANEYPLGTEYQLTTQTFNRYPECQPKHVIERYAAYAGLPPEQVLVSRGADEGIELLIRAFCEPGQDAILFCPPTYGMYAVSAETFGVERRTVPAQADWQLDLPAIANNLEQVKVIYVCSPNNPTGNLINPADLQAVLALAQGRAIVAIDEAYIEFCPQASVSNWLKDYPNLVILRTLSKAFALAGLRCGFTLANSDIIQLLLKVIAPYPLSTPVADIAAQALSPKGIEQMRQRVSEVRANRAWLQSALQDCACVEQVFTSESNYLLARFTASSSVFNALWDQGIILRDQNKQPGLANCLRITIGTRQECERVIAALAPLPGIDNSNNIDNQNKTYSQTSSIRKGTI
>NZ_CP009715.1|WP_011906252.1|2546759_2548190_-|exodeoxyribonuclease-I
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENSDRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
>NZ_CP009715.1|WP_002211905.1|2548482_2549592_+|NAD-dependent-epimerase/dehydratase-family-protein
MKKLLLTGATGFLGGAVLEKLLLASSDFNYLLLVRANTPEQGLMRIRENLEKFYLPNELINKININHVLLGDLAEPDSFINDVRIDDVTHVINCAAIASFGNNPLIWKVNVEGTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLLAEHCPTLPLVFARPSIVVGHTRLGCQPSSSIFWVFRMALMLRKFMCSLDDHIDVIPVDYCADALLYILEYPNLPDDIYHISAGEKGSVSFSEIDQAMSVAAKQKPVGVNYSQVEYTALVQMRNQLKGIFGPCNERLMLKAMRLYGSFAMLNVRFSNERLLSLGMPRTPRFTDYIARCVESSHGMTIQQQMAVDFK
>NZ_CP009715.1|WP_002217522.1|2550025_2550343_+|DUF496-family-protein
MDNASKPTFQDVLEFVRMFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEEVQAIIANMRGDYEDRVDDYIIKNADLSKERRELSKKLKAMGEVK
>NZ_CP009715.1|WP_002209743.1|2550713_2551922_+|IS256-family-transposase
MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL
>NZ_CP009715.1|WP_002216388.1|2551884_2555037_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MSLYRISSLHQAKQLNKNKQLNKTRISKSVVWANIVIQAIFPLSIAFTPAVMAAETVGASDEKPRSASQAEQSTANAATRLASILTNDDSAKQASSIARGTAANAGNEALQKWFNQFGSAKVQLNLDEKLSLKGSQLDVLLPLTDSPDLLTFTQLGGRYIDDRVTLNVGLGQRHFFAQQMLGYNLFIDHDASYSHTRIGVGAEYGRDFINLAANGYFGVSGWKNSPDLDKYDEKVANGFDLRSEAYLPTLPQLGGKLIYEQYFGDEVGLFGVDNRQKNPLAVTLGVNYTPIPLFTVGVDHKMGRAGMNDTRFNLGFNYAFGTPLTHQLDSDAVAIKRSLMGSRYNLVDRNNQIVMKYRKQNRVTLELPARVSGAARQTMPLVANATAQQGIDRLEWEASALTLAGGKITGSGNNWQITLPSYLSGGEGNNTYRISAIAYDTLGNASPVAYSDLVVDSHGVNTNASGLTAAPEILPANASASSVIEFNIKDNANQPITGIADELAFSLELVELPEELAKAKARSVPLKTVSHTLTKITESAPGIYQATLTSGSKPQLINITAQINGVPLADVQTKVTLIADESTATLQTSSLQIITNGSLADDTDANQIRAVVVDAYGNKLSGVQVNFTVGNNAKITETTLSDKQGGVTAAITSTKAGTYTVTAELNGVTQQIDVNFIPDAGTATLDDSDEYKLQWVTNGQVADGESTNSVQLTVVDKFGNTVPGVDVAFTTDIGAIISEVTPTDANGVATAKIISSQAKSHTVKATLNRKEQTVEVNFIADTATAEITANNFTVEVDGQVAGSGTNQVQALVVDKKGNPVANMTVNFTATNGVVVETTSAKTDENGKVTTNLSMTNVGGTISTVTATMINSANVTSTQDKPVIFYPDFTKATLNTPANTYSGFNINSGFPTTGFKNTHFQLSPHGITGANSDYDWVSSHPNVSVSNTGAITLQDNPGGKVTITATWKHDSSKVFTYDFTLNYWVGLYSSTNLSWAQANASCINAGMRLPTNREVSAGQDVRGVGSLLSLSIILCNCHRIKGDRSGGHRTR
>NZ_CP009715.1|WP_002211911.1|2556061_2557366_+|MFS-transporter
MSNFNHYPDPTLNSAIKKAWYRLMPLMFIMYFVAFIDRINVGFAKDAMSADIGLSQSAFALGAGIFFAAYALFGIPANLMMNKLGAKVWLSSTTVVWGLLSAGTGLVSNEYQFVILRFLLGVAEAGFYPGILLLASIYFPNKIRASVIGIFVLGVPAALTLGSPISGALLDMQGFLGQPGWFWMFLLEGLPAVGLGIFAFFYLDDSPATARYLNPEEKQALLTQLSIEQSDTESSSVKAVLLSPKVWHLALIYGTIQVGVYGLIFFLPSQVATLLGSTLGFKESLVAAIPWAFSALGVYYIPRYADRKTHRRNPIATLNLVVAAIGLIISAYASPVLAIAALCLCAIGFLAVQPIFWTFPAQILSGKALAAGIGFCTTMGAFFSFLAPIIRVEAESQFNSPPAGLITLALFSLLSATLIFSLKFWPAKATAEVI
>NZ_CP009715.1|WP_002211912.1|2557374_2557797_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MSAPLPYIKPGERVIIYDGVCALCTGWVNFLIRHDRRHTVRLSAVQSKKGHALLEWAGLPTDKINTLVLIENQQVYLRSEAIFRVIANLPWPWRILGVLRIFPRPLRDRCYDGIALNRYRLFGRYDAVRKLKADHERRFL
>NZ_CP009715.1|WP_002216393.1|2558224_2558965_+|SDR-family-oxidoreductase
MNLKGKKALVTAAGQGIGFNTATLFARKGAEVIASDINIAALSNIPGITAVSLDVTDTLAINDVAQAIGPIDVLFNCAGVVHSGDILTCSEQEWQFALDLNVTAMFHMIRAFLPGMIACQQGSIINMSSVASSIKGVPNRFAYSTSKAAVIGLTRSVAADYVTQGIRCNAICPGTVESPSLRQRIAVQAHAEGRSEADVFQAFAARQPIGRIGKAEEIAQLALYLASDASAYTTGTIHIIDGGWSN
>NZ_CP009715.1|WP_002211916.1|2559012_2559855_+|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGEERPALLDELGEIRDLSAHIEDISGKFLLPATLYKLRQLDSASLPLVRGEQRLGACVGHVGKFICVGLNYADHAAETGAEIPQEPVIFNKWTSAIIGPNDDIEIPRNSVKTDWEVELGVVIGTGGRYIGEANAMSYVAGYCVVNDISEREFQLEHGGTWDKGKGCDTFGPIGPWLVTRDEIPDPHQLGLWLDVDGRRYQNGSTRTMIFKIPQIISYLSRFMSLQSGDVISTGTPPGVGLGQKPPVYLHAGQIMRLGIEGLGEQCQKTIQA
>NZ_CP009715.1|WP_002211917.1|2559886_2561164_+|L-fuconate-dehydratase
MTIITALRTEDVRFPTSLELDGSDAMNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANMGKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELVRCIDFRYITDCITPEEALTLLQQRAHNKALRLEKLQDEGYPCYTTSAGWLGYPDDKLRRLCQDAVDAGFDYLKLKVGRDLEDDIRRVRITREVLGPDRKLMIDANQIWETNEAIPWVNQLAFANPWFIEEPTNPDDIEGHRRIRQGVAPVKVATGEMCQNRIMFKQFIMREAIDVVQIDACRLGGVNEVLAVMLMAAKYDLPVCPHAGGVGLCEYVQHLAMIDYLCIAGTDKGRVIEYVDHLHEHFVHPCVIKNAAYMPPEQPGFSIEMHQSSIEKYRFRV

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Crispr_ID: NZ_CP009715_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009715_5

3526117-3526506

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR

6 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP009715_5

>merge|NZ_CP009715|5|3526117-3526506|CRISPRCasFinder,CRT,PILER-CR
TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCTGCCTGTGCGGCAGTGAACGAAAAGGTAAGATGGGCAAGCTTCTAGTAGTTTTTCTAAGCTGCCTGTGCAGCAGTGAACATTATCTGAATGGCATTTTCTTTGGCGCAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGCCATTCCGTGAACCTGAGCGCGTTCGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACATATTCTCGAGCGATAGCAATAGCCATTCCACTTTCTAAGCTGCCTGTGCGGCAGTGAACTTATCCGTGACCGACTCAAATACACGCTGGAACGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009715|5|4|3526117-3526506|CRISPRCasFinder
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTCTCGAGCGATAGCAATAGCCATTCCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTATCCGTGACCGACTCAAATACACGCTGGAACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009715|5|2|3526117-3526506|CRT
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTCTCGAGCGATAGCAATAGCCATTCCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTATCCGTGACCGACTCAAATACACGCTGGAACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009715|5|3|3526177-3526506|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTCTCGAGCGATAGCAATAGCCATTCCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTATCCGTGACCGACTCAAATACACGCTGGAACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009715.1\|WP_002210196.1\|3532216_3533272_-\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NZ_CP009715.1\|WP_002210201.1\|3537842_3539231_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NZ_CP009715.1\|WP_002222491.1\|3519737_3521084_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP009715.1\|WP_002221142.1\|3521492_3524780_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP009715.1\|WP_002210200.1\|3536785_3537826_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NZ_CP009715.1\|WP_002210193.1\|3528700_3529975_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009715.1\|WP_002211863.1\|3514187_3515546_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP009715.1\|WP_002230953.1\|3530013_3531129_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009715.1\|WP_011906296.1\|3524776_3525757_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP009715.1\|WP_002211868.1\|3518790_3519741_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP009715.1\|WP_002211867.1\|3517768_3518773_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP009715.1\|WP_002211865.1\|3516106_3517126_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NZ_CP009715.1\|WP_002210192.1\|3526843_3528088_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NZ_CP009715.1\|WP_002216551.1\|3513854_3514064_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009715.1\|WP_002211864.1\|3515592_3516096_+\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NZ_CP009715.1\|WP_002210197.1\|3533418_3534243_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009715.1\|WP_002210198.1\|3534243_3535119_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009715.1\|WP_002213840.1\|3531251_3532190_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NZ_CP009715.1\|WP_002210199.1\|3535227_3536514_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP009715.1\|WP_002211866.1\|3517203_3517758_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224

Protein	Function_ID	Function_description	E-value
NZ_CP009715.1\|WP_002210196.1\|3532216_3533272_-\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	9.75278e-165
NZ_CP009715.1\|WP_002210201.1\|3537842_3539231_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP009715.1\|WP_002222491.1\|3519737_3521084_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NZ_CP009715.1\|WP_002221142.1\|3521492_3524780_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP009715.1\|WP_002211863.1\|3514187_3515546_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.50877e-50
NZ_CP009715.1\|WP_002210200.1\|3536785_3537826_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NZ_CP009715.1\|WP_011906296.1\|3524776_3525757_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP009715.1\|WP_002211868.1\|3518790_3519741_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	1.12008e-157
NZ_CP009715.1\|WP_002211867.1\|3517768_3518773_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP009715.1\|WP_002211865.1\|3516106_3517126_+\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	6.34333e-143
NZ_CP009715.1\|WP_002210192.1\|3526843_3528088_+\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.65074e-32
NZ_CP009715.1\|WP_002211864.1\|3515592_3516096_+\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	1.50048e-90
NZ_CP009715.1\|WP_002210197.1\|3533418_3534243_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NZ_CP009715.1\|WP_002210198.1\|3534243_3535119_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.26211e-58
NZ_CP009715.1\|WP_002213840.1\|3531251_3532190_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	6.29599e-176
NZ_CP009715.1\|WP_002210199.1\|3535227_3536514_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.85244e-50
NZ_CP009715.1\|WP_002211866.1\|3517203_3517758_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94

>NZ_CP009715.1|WP_011906296.1|3524776_3525757_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILYSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILTRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NZ_CP009715.1|WP_002221142.1|3521492_3524780_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALNETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETTLMSNLVKDGLDDYTNPLAALPPLAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLVLMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDANAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPRGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQASGQPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKNGSVLDAMAAVMRDSMLRLHQAHHQTHPSEKTVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKDPAIPVYCKPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAAGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLPKKDGERWHYHPLLGVFGALD
>NZ_CP009715.1|WP_002222491.1|3519737_3521084_-|type-I-F-CRISPR-associated-protein-Csy1
MSDEGLAAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRQELIARYEVRNWLTDAANRAGQIKLATHAPKYTHSDSKSSGILNIELQSKKKDYFSSVDLAEQASDVIGNAAVFDLVKLLQSECEGGSLIKCLEQGDNSVLKLFSNDDELVEEWTTKFKSILNNEKFTSHKLAKQFYFPVGPDQYHLLSPLFSSSLAQAMHQRIIEARFSDQSKEAKAAHKAGRWHPTVRVLYLDTAVQHIGGTKPQNISYLNSVRGGKVWLLPCGAPSWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQLYLLGVKPLSNTMDIRAARLACCDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPTRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETSS
>NZ_CP009715.1|WP_002211868.1|3518790_3519741_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHYQQVHAYLSGWDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEVATRRLLCRLLPGFALLDRSELLAEHLNRLRQTNPQAEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NZ_CP009715.1|WP_002211867.1|3517768_3518773_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPAKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NZ_CP009715.1|WP_002211866.1|3517203_3517758_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NZ_CP009715.1|WP_002211865.1|3516106_3517126_+|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEEHFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NZ_CP009715.1|WP_002211864.1|3515592_3516096_+|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHYPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NZ_CP009715.1|WP_002211863.1|3514187_3515546_+|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NZ_CP009715.1|WP_002216551.1|3513854_3514064_-|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK
>NZ_CP009715.1|WP_002210192.1|3526843_3528088_+|mechanosensitive-ion-channel
MQQRISQWLERLGMEFSDVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NZ_CP009715.1|WP_002210193.1|3528700_3529975_-|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NZ_CP009715.1|WP_002230953.1|3530013_3531129_-|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHAGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NZ_CP009715.1|WP_002213840.1|3531251_3532190_-|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFSEQQGQWAPVENAPTFQLQDPFFTRIEDELILGGVEINPHPDNPRQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTKNYTPIKIIAARDNFLPGATKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NZ_CP009715.1|WP_002210196.1|3532216_3533272_-|glycosidase
MMRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NZ_CP009715.1|WP_002210197.1|3533418_3534243_-|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NZ_CP009715.1|WP_002210198.1|3534243_3535119_-|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFIWLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFISSFLFAFGLQKLKHGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NZ_CP009715.1|WP_002210199.1|3535227_3536514_-|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIKEVNAILKP
>NZ_CP009715.1|WP_002210200.1|3536785_3537826_+|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NZ_CP009715.1|WP_002210201.1|3537842_3539231_+|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK

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Crispr_ID: NZ_CP009715_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009715_6

4439928-4440317

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR

6 spacers

The CRISPR arrays of NZ_CP009715_6

>merge|NZ_CP009715|6|4439928-4440317|CRISPRCasFinder,CRT,PILER-CR
TCTATAAGCTGCCTGTGCGGCAGTGAACTCTGTACGCATACCGCCATCTTGCATCAGTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACTGTTCTGAGAACGCTGCATGTCATTGCCTGGGGTTTCTAAGCTGCCTGTGCGGCAGTGAACAGCAAAAATCTTAATTACATCTGATGATTTCGGTTTCTAAGCTGCCTGTGCGGCAGTGAACAGTGACTAACACGTCACAAATGTCGCCGTTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACCGGACGCGGTGAAAACTATCCTGCAACGATTCTTTCTAAGCTGCCTGTGCGGCAGTGAACTATGAGTGACAGCCGTTTTCACCACCGCCGTGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009715|6|5|4439928-4440317|CRISPRCasFinder
TCTATAAGCTGCCTGTGCGGCAGTGAAC	TCTGTACGCATACCGCCATCTTGCATCAGTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTCTGAGAACGCTGCATGTCATTGCCTGGGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCAAAAATCTTAATTACATCTGATGATTTCGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGTGACTAACACGTCACAAATGTCGCCGTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGGACGCGGTGAAAACTATCCTGCAACGATTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATGAGTGACAGCCGTTTTCACCACCGCCGTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009715|6|3|4439928-4440317|CRT
TCTATAAGCTGCCTGTGCGGCAGTGAAC	TCTGTACGCATACCGCCATCTTGCATCAGTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTCTGAGAACGCTGCATGTCATTGCCTGGGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCAAAAATCTTAATTACATCTGATGATTTCGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGTGACTAACACGTCACAAATGTCGCCGTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGGACGCGGTGAAAACTATCCTGCAACGATTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATGAGTGACAGCCGTTTTCACCACCGCCGTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009715|6|4|4439988-4440317|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTCTGAGAACGCTGCATGTCATTGCCTGGGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCAAAAATCTTAATTACATCTGATGATTTCGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGTGACTAACACGTCACAAATGTCGCCGTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGGACGCGGTGAAAACTATCCTGCAACGATTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATGAGTGACAGCCGTTTTCACCACCGCCGTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009715.1\|WP_002227877.1\|4426034_4426955_-\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP009715.1\|WP_002210307.1\|4424704_4425007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009715.1\|WP_002209748.1\|4452645_4453047_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP009715.1\|WP_002209751.1\|4453944_4454184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009715.1\|WP_002223316.1\|4440676_4441225_+\|DUF1440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226008
NZ_CP009715.1\|WP_011906367.1\|4429109_4430243_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP009715.1\|WP_002216002.1\|4451160_4451742_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009715.1\|WP_002210304.1\|4427107_4429078_-\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NZ_CP009715.1\|WP_002223323.1\|4431306_4432854_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009715.1\|WP_002210302.1\|4430266_4431295_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009715.1\|WP_002210300.1\|4432902_4433832_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380623
NZ_CP009715.1\|WP_038893265.1\|4452009_4452411_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP009715.1\|WP_002209749.1\|4453058_4453631_-\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NZ_CP009715.1\|WP_138921619.1\|4447717_4450030_+\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|273954
NZ_CP009715.1\|WP_002210296.1\|4439069_4439924_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP009715.1\|WP_002209745.1\|4450242_4450488_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NZ_CP009715.1\|WP_002214723.1\|4422849_4424640_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|227590
NZ_CP009715.1\|WP_002227852.1\|4453654_4453906_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009715.1\|WP_002210294.1\|4441631_4447610_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP009715.1\|WP_002210306.1\|4425209_4426025_-\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|226241

Protein	Function_ID	Function_description	E-value
NZ_CP009715.1\|WP_002227877.1\|4426034_4426955_-\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	8.43662e-165
NZ_CP009715.1\|WP_002209748.1\|4452645_4453047_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	7.32611e-43
NZ_CP009715.1\|WP_002223316.1\|4440676_4441225_+\|DUF1440-domain-containing-protein	gnl\|CDD\|226008	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown].	1.03166e-68
NZ_CP009715.1\|WP_011906367.1\|4429109_4430243_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.01381e-70
NZ_CP009715.1\|WP_002210304.1\|4427107_4429078_-\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NZ_CP009715.1\|WP_002223323.1\|4431306_4432854_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP009715.1\|WP_002210302.1\|4430266_4431295_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.15893e-97
NZ_CP009715.1\|WP_002210300.1\|4432902_4433832_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380623	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins. The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.	4.31227e-120
NZ_CP009715.1\|WP_038893265.1\|4452009_4452411_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	8.45395e-38
NZ_CP009715.1\|WP_002209749.1\|4453058_4453631_-\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	2.31704e-76
NZ_CP009715.1\|WP_138921619.1\|4447717_4450030_+\|penicillin-binding-protein-1C	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP009715.1\|WP_002210296.1\|4439069_4439924_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.17523e-68
NZ_CP009715.1\|WP_002209745.1\|4450242_4450488_-\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	5.27401e-36
NZ_CP009715.1\|WP_002214723.1\|4422849_4424640_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|227590	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP009715.1\|WP_002210294.1\|4441631_4447610_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP009715.1\|WP_002210306.1\|4425209_4426025_-\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|226241	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism].	3.14642e-169

>NZ_CP009715.1|WP_002210296.1|4439069_4439924_+|MurR/RpiR-family-transcriptional-regulator
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAERADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMESEAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVVGLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSISFSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDAFRSQSATLCLVQSLVVALAYQQEAQAGAALAHRQ
>NZ_CP009715.1|WP_002210300.1|4432902_4433832_-|sugar-ABC-transporter-substrate-binding-protein
MKKLILAALIVFTSGVAFAENEQIVFSTPNLAMPFEVHMQRTAVKTAKALGVKLQVLDGQGSSPKQVADLENAITRGAQGFIVSPNDINAISSAVEEIQQAKLPVVTLDRSVESEKKVPHFGANNYKGGEAIANYVKSMFPNGAEIVLLTGQPGSSSNIERTKGIRDSLKTGGDKYRIVVDQTGNWMRSEGMRIIESVLPSLPKPPQVILSANDDMALGAIEALQSHGMKPGEIMVTGFDAVPEALARVREGWMAVTADQRPGYAVTTAMNQLVANIRDQKAITGADFLPTMITKENLDQAERVSEAGK
>NZ_CP009715.1|WP_002223323.1|4431306_4432854_-|sugar-ABC-transporter-ATP-binding-protein
MSQPLLKITDMAKSFSGVWALSNVQLTLEQGEIHALLGENGAGKSTLLKALSGAQPQTHGEIWFNGEMLALDDSPVERQNKGIITIYQEVNLLPNMTVAENMFLGREPRRRQVFVDEKAVNQEAQAILDYLQLNVSPTTAVARLSIAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVESLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRYTGSDEVAGTNVEKIIRLMVGRDVVFNRRPASETHHQDQPIRLSVQGLCREKPPLDPHGVALKDISFHVHAGEVLGIAGLVGAGRTEVARCLFGAGAFTSGNFEIDGVPYQPRDPMFALEQGIALVPEDRKKEGAVQGLSIRDNLTLSSLAGLLQWRFFVNTRKEDQLIETYRLALQIKMVNSEQAVRKLSGGNQQKVILARCMALNPRILIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVLAVSDRIITLSEGRVTGEIHGDDASEERLMTMMTINHNALNAA
>NZ_CP009715.1|WP_002210302.1|4430266_4431295_-|ABC-transporter-permease
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
>NZ_CP009715.1|WP_011906367.1|4429109_4430243_-|Gfo/Idh/MocA-family-oxidoreductase
MKEVRIGLIGTGYIGKAHAIAYAQAPTVFELRGKLVREMVAEVSPALAAQCAQAFGFNRFTCDWRELVADPAIDVVDICSPNYLHKEMALAAIHHGKHVYAEKPLALNARDASEMAAAATRAGVKTLVGFNYIKNPSAKLAKEIIERGEIGEVIHFYGTHNEDYMADPNTPIHWHCLHATAGLGALGDLAAHIVSMAQYLVGEITQVCGDLKTVVVTRPASVGSSARVAVENEDQAHAMVRFVNGAQGVIEASRVACGRKMGLSYMITGTQGAISFTQERMAELKLYLHNDPVNRQGFRTLLVGPAHPEYAAFCMAAGHGIGFNDQKTVEVRDLIDGIAMDTPLWPDFAEGWKVSRILDAIALSHQDSRWVNVTDIV
>NZ_CP009715.1|WP_002210304.1|4427107_4429078_-|5-dehydro-2-deoxygluconokinase
MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARSLAITGTHLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGSTNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK
>NZ_CP009715.1|WP_002227877.1|4426034_4426955_-|myo-inosose-2-dehydratase
MRKTEADRHTTAVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFAGFELGNKFSREAGVLGPILEHHQLKLVSGWYSGRLLERSVEEEIVAVRSHLALLRELGAKVMVFAEVSGCIHGEQQTPVHLRPRFPPARWAEYGAKLTAFARYTQALGVQIAYHHHMGTVIESAQDIDNLMIHTGEEVGLLLDTGHLTFAGADPLAVAQRWIARINHVHCKDVRTSVLADVKNRKTSFLDAVLSGVFTVPGDGGVDYPPIMALLKQHGYQGWLVVEAEQDPNVAHPMTYARMGYHNLSRLAHNAGLI
>NZ_CP009715.1|WP_002210306.1|4425209_4426025_-|5-deoxy-glucuronate-isomerase
MSRLLSRRQAPDERGLTQRITPAQAGWGYVGFEVYELNEGQPLTLTAVPDERCLVLIAGRASISTPSAQFPNIGDRMSPFERHKPWAVYVTPGEAVQVQAITPLELAVCSAPGKGTYPTRLISPEDIGAEARGKGHNQRYVHNILPEDHPADSLLVVEVYTNEGASSSYPSHKHDTDNPPHETYLEETYYHRLNPEQGFCMQRVYTDDRSLDECMAVYNREVVMVPRGYHPVATMAGYDSYYLNVMAGPVRKWIFSWENDHVWINHNYPIT
>NZ_CP009715.1|WP_002210307.1|4424704_4425007_+|hypothetical-protein
MQSPSNNSRAHCSKPFLYRQNQWHFNQAISEYRLPAPLSAQDLTDSVNHINMSVIKDNAIRASGTAKIMMNHRLRRTAATIKPTHIAATTGQYIIEKTMI
>NZ_CP009715.1|WP_002214723.1|4422849_4424640_-|ABC-transporter-ATP-binding-protein/permease
MDRSRILKFLLPYLWPKDNPKLRYYLIIALFFMVIAKISTTLVPLAYKSMVDTLSSENAKMLAIPISLIIAYGVARVSASLFEELRNVMFVHVSQNATRLLGLRVFRQLHALSLRFHLERQTGGLSLSIERGTQAVSTVLSRLLFSILPILFEITLVSVIMWRLLSGWFALAILVTVSCYILFTVMAVGWRTRFRRELNKANADANTKSIDSLLNYETVKYFGNEDFEAERFNLSRQLYEYAAIKNQISFTVLSFGQTAIISVGLIVMMAMAAQGIVQGQMTIGDFVLVNAYLLQLYQPLNFFGFIYSEIRQALIDMENMLDLLMVKQEITDRPDALPLQLTKGEVRFDAVSFSYDPRRPILNNVSFTIPPGKTVAIVGASGAGKSTLARLLFRFYDVTAGAVYLDDQDIRGVTQSSLREAIGIVPQDTVLFNDTLRYNIGYGKTDSTDEEIERAAKLAHIHEFIISLPDGYETRVGERGLKLSGGEKQRVAIARTILKKPSILVFDEATSALDTHTEREIQSHLREVSRDHTTLVIAHRLSTIIDADEIIVLEAGSIVERGRHDELLLKNGRYAGMWQNQYHEEEAYHEAEQPVL
>NZ_CP009715.1|WP_002223316.1|4440676_4441225_+|DUF1440-domain-containing-protein
MSEKRVNLQVIAWATIIGGFVSSLVKSGTEVNMPPRVVGEISPPAANIDAWLGWLGINSHSMDYVYQGVTISGAVVLYHWLFSFVFAFVYVLLSAYWPKVRLWYSAAYGLSITVAIHGVLIPALGFRHPAYLAGETGWLWNLNGYELWSEIIGHLCWSASLEICLVAVLAFFSKPIKGIWAN
>NZ_CP009715.1|WP_002210294.1|4441631_4447610_+|alpha-2-macroglobulin-family-protein
MDLLRFLLISPFALIKGLYRLSAYLLRLVGRLLRPVVGNLNWRAPQWMTKTANGLHCAFNRSEQWVAKHPKGISAAIVLLMAAASAAFYGYHWYLNRPQPIEPAPMVYQETSIRVSAPRTVNYQAQKPEAQPLSLNFMHSAAPITAMGQVVDQGISLTPAIEGEWKWATERTLVFTPKKAWPMGANYQITIDTEKLLAPQIKLNQTELNFTTPAFAYQLEKAEYYQDPQEAQKRSTIFHVQFNAPVDVASFEKQILLGLVEGKSKSEKKLNFSVVYDEKKLNAWIHSQPLMPMDKGGSVHLSINKGVNASVAATPTTQAQNKWVSVPNLYSLAVNSINATLVESDNNNGERALIIAISDAVKDKEIKNAVKAWLLPQHNFQAKESAKTSTDFYPWDMDDIDDNLLQQSTPLALTLNEAEQEYQPIFSFKFDAPSYRTLLIEVNNSLTSVGGYKMPEKIYQIVRVPDYPKTLRFMSQGSLLSMQGDKQISVAARNMTGMKLDIKRVIPSQLQHIVSFKSSEYSSAHFNRLSDEYFTEHFQYQTALNNDNPGEINYQGVDLSRYLANNPSARRGVFLLTLSAWDPEKRDNQQHSEEDYDEDQEWVGDSRFVVITDLGIITKQSQDRSRDVFVQSIHSGLPAADAKVSVVAKNGVVLLSQITDSKGHVHFPALDAFKNERQPVMFLVEKEGDVSFLPTRATYDRNLDFSRFDIDGEETPSDPRTLSSYLFSDRGVYRPGDRFNIGLITRTANWATALDGVPLRAEIRDPRDTLMSTLPITLDSSGFNELSYTTGENSPTGEWNVYLYLVGKNNETSMLLGHTTVNVKEFEPDRLKVQLQLTPERQQGWVKPQELQANINVQNLFGTPAQERRVTSRLILRPMYPSFAPFPDYLFYENRHNSDGFETELEEQTTDLQGMATIPLDLKSYADATYQLQLLSEAFEAGGGRSVAATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYISVLTKQDSGVYKYQSRLKEQLVSEQPLQISPTGTDFTLVTQQPGDFILVVKDSQGQVLNRISYTVAGNANLTRSLDRNTELKLKLNQAEYLQGEEIEIAINAPYAGSGLITIEKDKVYSWQWFHSDTTSSVQRIRIPPAMEGNGYINVQFVRDVNSDEIFMSPLSYGVMPFKISTKARQAAIELASPSVIKPGEVLPIKVTTDSPQRVVVFAVDEGILQVARYRLKDPLDYFFRKRELSVQSAQILDLILPEFSKLMALTSAPGGDAGEGLDLHLNPFKRKQDKPVAYWSGITEVNGETTFNYPIPDYFNGKIRVMAISATPDRIGKVQTSTTVRDNFILTPNVPAMVAPGDEFDVTVGVSNNLQGLKGKAVDITVRLTPPPQLEVVGEAQHSLSLAEKRETLVSFRLRARSALGDAPLVFDASYGSQSSRRTVSTSVRPAMPFRTQSVMGRMEGNKHTVTNLRQMFDNYAQRQATASHSPLVLTQGLARYLADYPYYSSEQIVSRSIPLIMQSKHPEMDSALNQNEVRDQLKNMLRILSSRQNSTGAIGLWHASPTPDPFVTPYVVQFLLEAKSAGYSLPNDILEGANNALRLLAARPYDDLYSLRLRAFAVYLLTLQGEITTNTLASVQSTLQQLYPDSWQTDLSAIYLASSYRLLKMDDEANKLLQPTWKQLGKAYSKAWWTQNYFDPLVQDATRLYLITRHFPEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQIIEISKSKGIDPNVISTLNGLFVQGDFTGEAKAIQFNNYASAPAWYVVNQSGYDLQPPKDAISNGLEISRSYTDEQGKPVTQVTLGQKVNVHLKIRANAKQGQNNLAIVDLLPGGFEVVQQTAPEPEFYDNQDDQDEETGSGWQSPLMVSGSSWYPDYSDIREDRVIIYGSASTDVKEFIYQIKSTNTGRFVVPPAYGEAMYDRNVQALSVGKGHILVVPPEAK
>NZ_CP009715.1|WP_138921619.1|4447717_4450030_+|penicillin-binding-protein-1C
MALFLLALLVIGFRLWPHPPLSQGLPLSTAYYDRHGTLLRLSLANDDRYRLWTPLEEISPLVIQGIQLHEDRGFYYHPGVNPISLLRGFWQSYVQGGRQQGGSTLTMQLARMHWHLNTRSPTGKLRQIARAIQLELSYSKHDILEAYLNYAPYGRNIESIAAASLIYFDKKPQQLTLPEALTLAVLPQSPSYRIDPTTGVLGSALTQARNRLFVRWQQTYPTDSSQMALFQLPLSLRQPEKMPYIAPHFIEQIRRQNQQLANTQSQVDTTLDANLQQLVEKQVEAFIRRNNSRGIHNAAVLLLDTRDMGVRALVGSANYYDREIQGQVNGTNAKRSPGSTLKPFIYALGLEQGILHPMTILKDVPSSFGAYAPENFDHRFLGPVTATDALNFSRNIPAVYVASRLRQPTLYQFLRLSGVTNMASENHYGLSLVLGGGEITLQELARLYAMLANRGTLHPIQMVQTDKTLPSIRLLSEAASFITLDMLRQHRRPGDTLAQSPTSLPVYWKTGTSWGFRDAWSAGIFGPYVLIVWEGNFAGKGNSAFVGADAAAPLFFNIIDSIQANYPALREPKHPWPPQLKRVAICLASGNLPTPWCQQQGKTWFIPGKSPIKVDTVYRPVVIDINSGQAACLPYDRSQTRTEVFEFWPSDLANVFAQAGLPKRQPPDRSHCKEGNTLASGNAPRITSPLRNTTYTLRQSQQGRDQIVFSATLDADSTTTYWFVDDIYLGSSTSKKSIDWHPTRSGQYRIRAIDDHGRADSRLIRVEKVD
>NZ_CP009715.1|WP_002209745.1|4450242_4450488_-|transcriptional-regulator
MDKQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEIWPSRYLKPKKSPAESVNPG
>NZ_CP009715.1|WP_002216002.1|4451160_4451742_+|hypothetical-protein
MKYNSVLKTFVDDDYRLEDHLDFKKQHADIRYQKLHKQLNEMSDENMHALLTIEEGEYFLKTLCNPNPHQSWKDAIFSCTDPTSVFFGSLVESLSVSRIVFEIRGFGVTATEYVGKNGSSYIKLSGYAGIRKYLDATRYLIDNPKILDIGIGTQGIENGIVRGARFCIVFSAAYRSVELLLKDEYGLADFLLI
>NZ_CP009715.1|WP_038893265.1|4452009_4452411_+|DUF1240-domain-containing-protein
MVKINRPLVGAFAILLFFLSSWGCWFSLSGYLAFFKLSDVIIFSWKVGFVIFAVPLLFYFSYLAFFSAIKNKPAIMNNKLANALAILAIFGSIISLFSSAYISYSLTEYSYKSCPRSSWMSPNKYVKDIKLYP
>NZ_CP009715.1|WP_002209748.1|4452645_4453047_+|DUF1240-domain-containing-protein
MVKINRPLFGAFAVFLLFLSCWVSWFSLNGYWDFFKLSDVIIFSWKVGVMIFGAPVLFYFSYLAFYCAIKNKPAKVNNKLANTFAMLAMLGVVISFFSSVYIGYSLTEYGYKLCSRSSWMSPNEYVKDIKLCP
>NZ_CP009715.1|WP_002209749.1|4453058_4453631_-|Hcp-family-type-VI-secretion-system-effector
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENERINVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVYSFLISSTLFQVCLNIFIFFNWLVYQNYFWEK
>NZ_CP009715.1|WP_002227852.1|4453654_4453906_-|hypothetical-protein
MMKNNKNINKDEFSDKLSQQIKEMINNSQLDSVEILSVVMESIFSLFSETEGHLAEMKFIDSAGEDYRFILRLEVPPILERQH
>NZ_CP009715.1|WP_002209751.1|4453944_4454184_-|hypothetical-protein
MEKEKKTLFGHKTPAMMQLSEQLESSLHNSPLVPEEKLALIMKLCVLLFRENKTDAAEMKVSDGRILKLTLEKTSSVLH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009715_4	4.1\|2546425\|32\|NZ_CP009715\|PILER-CR,CRISPRCasFinder,CRT	2546425-2546456	32	NZ_CP009715.1	2982734-2982765	0	1.0
NZ_CP009715_4	4.2\|2546485\|33\|NZ_CP009715\|PILER-CR,CRISPRCasFinder,CRT	2546485-2546517	33	NZ_CP009715.1	2982324-2982356	0	1.0
NZ_CP009715_6	6.1\|4439956\|32\|NZ_CP009715\|CRISPRCasFinder,CRT	4439956-4439987	32	NZ_CP009715.1	2983768-2983799	0	1.0
NZ_CP009715_6	6.5\|4440198\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	4440198-4440229	32	NZ_CP009715.1	2984226-2984257	0	1.0
NZ_CP009715_6	6.6\|4440258\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	4440258-4440289	32	NZ_CP009715.1	2983359-2983390	0	1.0
NZ_CP009715_2	2.1\|1798072\|51\|NZ_CP009715\|PILER-CR	1798072-1798122	51	NZ_CP009715.1	1797959-1798009	1	0.98

1. spacer 4.1|2546425|32|NZ_CP009715|PILER-CR,CRISPRCasFinder,CRT matches to position: 2982734-2982765, mismatch: 0, identity: 1.0

acgaattgaaaaatcagagtcccagcctgaca	CRISPR spacer
acgaattgaaaaatcagagtcccagcctgaca	Protospacer
********************************

2. spacer 4.2|2546485|33|NZ_CP009715|PILER-CR,CRISPRCasFinder,CRT matches to position: 2982324-2982356, mismatch: 0, identity: 1.0

gtttaaccaagcgcagccaaacatgattgccaa	CRISPR spacer
gtttaaccaagcgcagccaaacatgattgccaa	Protospacer
*********************************

3. spacer 6.1|4439956|32|NZ_CP009715|CRISPRCasFinder,CRT matches to position: 2983768-2983799, mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

4. spacer 6.5|4440198|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to position: 2984226-2984257, mismatch: 0, identity: 1.0

cggacgcggtgaaaactatcctgcaacgattc	CRISPR spacer
cggacgcggtgaaaactatcctgcaacgattc	Protospacer
********************************

5. spacer 6.6|4440258|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to position: 2983359-2983390, mismatch: 0, identity: 1.0

tatgagtgacagccgttttcaccaccgccgtg	CRISPR spacer
tatgagtgacagccgttttcaccaccgccgtg	Protospacer
********************************

6. spacer 2.1|1798072|51|NZ_CP009715|PILER-CR matches to position: 1797959-1798009, mismatch: 1, identity: 0.98

gtcaacgccactcattccacaaaatcccgcttcggcgggtttttgctttgg	CRISPR spacer
gtcaactccactcattccacaaaatcccgcttcggcgggtttttgctttgg	Protospacer
****** ********************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009715_6	6.1\|4439956\|32\|NZ_CP009715\|CRISPRCasFinder,CRT	4439956-4439987	32	MT374852	Yersinia phage vB_YpM_3, complete genome	12-43	0	1.0
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK820641	Gordonia phage EnalisNailo, complete genome	34088-34119	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK878898	Gordonia phage Zameen, complete genome	34513-34544	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK919483	Gordonia phage Suscepit, complete genome	34514-34545	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK284520	Gordonia phage Lilas, complete genome	35799-35830	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK016492	Gordonia phage Bialota, complete genome	35265-35296	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK820642	Gordonia phage Polly, complete genome	33956-33987	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	NC_041883	Gordonia phage Attis, complete genome	31646-31677	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK814755	Gordonia phage Antonio, complete genome	34513-34544	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK875796	Gordonia phage Tayonia, complete genome	34513-34544	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK801734	Gordonia phage LordFarquaad, complete genome	31627-31658	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	MK433274	Gordonia phage Bradissa, complete genome	34554-34585	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	KU963257	Gordonia phage Kita, complete genome	34522-34553	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	NC_031251	Gordonia phage SoilAssassin, complete genome	31645-31676	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	NC_031097	Gordonia phage Zirinka, complete genome	35253-35284	6	0.812
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	138555-138586	6	0.812
NZ_CP009715_4	4.4\|2546606\|32\|NZ_CP009715\|PILER-CR,CRISPRCasFinder,CRT	2546606-2546637	32	MH616963	CrAssphage sp. isolate ctbg_1, complete genome	86942-86973	7	0.781
NZ_CP009715_5	5.1\|3526145\|32\|NZ_CP009715\|CRISPRCasFinder,CRT	3526145-3526176	32	CP049262	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence	69636-69667	7	0.781
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	JF974294	Aeromonas phage pIS4-A genomic sequence	21965-21996	7	0.781
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NC_021534	Vibrio phage pYD38-A genomic sequence	3299-3330	7	0.781
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	440819-440850	7	0.781
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	282870-282901	7	0.781
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	KJ433975	Mycobacterium phage 40BC, complete genome	23231-23262	7	0.781
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	KJ433973	Mycobacterium phage 39HC, complete genome	23231-23262	7	0.781
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	NC_024145	Mycobacterium phage Hosp, complete genome	21427-21458	7	0.781
NZ_CP009715_5	5.6\|3526445\|34\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526445-3526478	34	MK416013	Klebsiella phage ST16-OXA48phi5.1, complete genome	41421-41454	7	0.794
NZ_CP009715_5	5.6\|3526445\|34\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526445-3526478	34	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	36685-36718	7	0.794
NZ_CP009715_6	6.6\|4440258\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	4440258-4440289	32	MN509793	Pectobacterium phage MA13, partial genome	58-89	7	0.781
NZ_CP009715_4	4.4\|2546606\|32\|NZ_CP009715\|PILER-CR,CRISPRCasFinder,CRT	2546606-2546637	32	NZ_CP010358	Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence	46720-46751	8	0.75
NZ_CP009715_4	4.4\|2546606\|32\|NZ_CP009715\|PILER-CR,CRISPRCasFinder,CRT	2546606-2546637	32	NC_019694	Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence	20911-20942	8	0.75
NZ_CP009715_4	4.4\|2546606\|32\|NZ_CP009715\|PILER-CR,CRISPRCasFinder,CRT	2546606-2546637	32	MT774386	CrAssphage cr110_1, complete genome	42858-42889	9	0.719
NZ_CP009715_4	4.4\|2546606\|32\|NZ_CP009715\|PILER-CR,CRISPRCasFinder,CRT	2546606-2546637	32	NZ_CP028934	Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence	25849-25880	9	0.719
NZ_CP009715_5	5.2\|3526205\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526205-3526236	32	NZ_CP031943	Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence	4006-4037	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	MF679145	Escherichia coli plasmid pBJ114-96, complete sequence	37586-37617	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	60831-60862	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP021340	Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence	67671-67702	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP021336	Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence	67672-67703	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP040920	Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence	33435-33466	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP024832	Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence	33830-33861	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP024817	Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence	62769-62800	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	15616-15647	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	112580-112611	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP023961	Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence	16858-16889	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	AP023222	Escherichia coli M505 plasmid pM505-b DNA, complete genome	93734-93765	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	AP023233	Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome	47570-47601	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP019075	Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence	16520-16551	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	3287-3318	9	0.719
NZ_CP009715_5	5.3\|3526265\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526265-3526296	32	NZ_CP011063	Escherichia coli str. Sanji plasmid pSJ_98, complete sequence	37637-37668	9	0.719
NZ_CP009715_6	6.3\|4440077\|33\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	4440077-4440109	33	NZ_CP040366	Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence	923-955	9	0.727
NZ_CP009715_5	5.4\|3526325\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	3526325-3526356	32	NZ_JX627581	Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence	30496-30527	10	0.688

1. spacer 6.1|4439956|32|NZ_CP009715|CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

2. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

3. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

4. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

5. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

6. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

7. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

8. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

9. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

10. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

11. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

12. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

13. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

14. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

15. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

16. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

tcgccattccgtgaacctgagcgcgttcgcga--	CRISPR spacer
tcgcctttccctgaacctga--gcgatcgtgacc	Protospacer
***** **** *********  *** ***.**

17. spacer 4.4|2546606|32|NZ_CP009715|PILER-CR,CRISPRCasFinder,CRT matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 7, identity: 0.781

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
aattataaaagatgctgataaaaagattatta	Protospacer
* **** ***********.******* . * *

18. spacer 5.1|3526145|32|NZ_CP009715|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

tcaggggactggcgaacaatgtctttcatgat	CRISPR spacer
acgtcgcgctggcgaacaatctctttcatgat	Protospacer
 *.  * .************ ***********

19. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

20. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

21. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

22. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

23. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

24. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

25. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

26. spacer 5.6|3526445|34|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK416013 (Klebsiella phage ST16-OXA48phi5.1, complete genome) position: , mismatch: 7, identity: 0.794

ttatccgtgaccgactcaaatacacgctggaacg	CRISPR spacer
ggatccgcgaccgactcaagtacacgctggataa	Protospacer
  *****.***********.***********  .

27. spacer 5.6|3526445|34|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 7, identity: 0.794

ttatccgtgaccgactcaaatacacgctggaacg	CRISPR spacer
ggatccgcgaccgactcaagtacacgctggataa	Protospacer
  *****.***********.***********  .

28. spacer 6.6|4440258|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MN509793 (Pectobacterium phage MA13, partial genome) position: , mismatch: 7, identity: 0.781

tatg-agtgacagccgttttcaccaccgccgtg	CRISPR spacer
-acgcaggcccagccggtttcatcaccgccgtg	Protospacer
 *.* **   ****** *****.**********

29. spacer 4.4|2546606|32|NZ_CP009715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaatgatgctgacgaaaatatggcac	Protospacer
********* *********.**** *   .*

30. spacer 4.4|2546606|32|NZ_CP009715|PILER-CR,CRISPRCasFinder,CRT matches to NC_019694 (Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaaagaagctgccaaaagagcatcaa	Protospacer
************ **** *****...  *.**

31. spacer 4.4|2546606|32|NZ_CP009715|PILER-CR,CRISPRCasFinder,CRT matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
tgctattgaagatgctgataaaaagaaacttg	Protospacer
  .****.**********.******** .* .

32. spacer 4.4|2546606|32|NZ_CP009715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
gcacattacagacgctgacaaaaagaaagtta	Protospacer
.. .**** ***.**************  * *

33. spacer 5.2|3526205|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaaggtaagatgggcaagcttctagtagtt	CRISPR spacer
ttatgagaaagatgggcaagcttttagtggta	Protospacer
  * ..* ***************.****.**

34. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

35. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

36. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

37. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

38. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

39. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

40. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

41. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

42. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat-----	CRISPR spacer
attatctgattggcagtttctttaac-----tgttta	Protospacer
********* ***** *******..*     *

43. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

44. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

45. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

46. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

47. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

48. spacer 5.3|3526265|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

49. spacer 6.3|4440077|33|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040366 (Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

agcaaaaatcttaattacatctgatgatttcgg	CRISPR spacer
ggaaaaaaacttaattacatctgataatccatt	Protospacer
.* ***** ****************.**..

50. spacer 5.4|3526325|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
ctaacgagccgtgaacctcagcgcattcgcgt	Protospacer
... *.  ********** *****.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1288940 : 1368327

Yellowstone_lake_phycodnavirus(18.18%)

plate,transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210509.1\|1288940_1291757_+\|tRNA	isoleucine--tRNA ligase	A0A2H4UVG0	Bodo_saltans_virus	1.0e-63	26.1
WP_002210508.1\|1291756_1292266_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_002228112.1\|1292333_1292792_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_002210506.1\|1292772_1293726_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_002210504.1\|1294307_1295129_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_002224759.1\|1295601_1296777_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	6.9e-51	34.3
WP_011191702.1\|1296792_1300026_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_002210501.1\|1300253_1300868_-	LysE family translocator	NA	NA	NA	NA
WP_002210499.1\|1301191_1301992_+	threonine/serine exporter ThrE family protein	NA	NA	NA	NA
WP_002210498.1\|1301988_1302444_+	threonine/serine exporter	NA	NA	NA	NA
WP_002210497.1\|1302593_1303076_+	type 3 dihydrofolate reductase	A0A219UQN5	Bacillus_phage	4.7e-30	42.6
WP_071525509.1\|1303464_1303779_+	DUF3757 domain-containing protein	NA	NA	NA	NA
WP_011906415.1\|1303905_1304370_+	DUF3757 domain-containing protein	NA	NA	NA	NA
WP_002210492.1\|1304459_1305329_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA
WP_002210491.1\|1305345_1305723_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_002210490.1\|1305736_1306555_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_002210489.1\|1306547_1307543_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_002210488.1\|1307526_1308831_-	peptidylprolyl isomerase SurA	NA	NA	NA	NA
WP_016674007.1\|1308898_1311241_-	LPS assembly protein LptD	NA	NA	NA	NA
WP_002210486.1\|1311425_1312259_+	co-chaperone DjlA	NA	NA	NA	NA
WP_002210485.1\|1312556_1313177_-\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_002214747.1\|1314399_1315143_-	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_002210482.1\|1315472_1316486_+	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_002210481.1\|1316496_1317057_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002210480.1\|1317065_1318568_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002210479.1\|1318730_1319249_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_002210478.1\|1319322_1319766_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002210477.1\|1319798_1321643_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002210476.1\|1321635_1322619_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002210475.1\|1322636_1325225_+	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	1.9e-77	28.7
WP_002210474.1\|1325328_1327677_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-14	32.9
WP_002224087.1\|1327689_1329909_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_002214739.1\|1329934_1331038_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002210473.1\|1331030_1331648_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_002214737.1\|1331653_1332019_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_002210471.1\|1332011_1332503_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002210470.1\|1332622_1333978_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011906413.1\|1333974_1335564_+	OmpA family protein	NA	NA	NA	NA
WP_002210468.1\|1339088_1339442_+	hypothetical protein	NA	NA	NA	NA
WP_002220588.1\|1339697_1342604_-	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	3.0e-23	37.6
WP_002210466.1\|1343048_1345418_-	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	1.5e-31	25.5
WP_002210465.1\|1345613_1346381_+	DedA family protein	NA	NA	NA	NA
WP_002210464.1\|1346449_1347160_-	thiamine ABC transporter ATP-binding protein ThiQ	G3M9Y6	Bacillus_virus	1.0e-20	34.1
WP_002214276.1\|1347146_1348754_-	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA
WP_002214274.1\|1348729_1349722_-	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA
WP_002210461.1\|1350661_1352323_-	HTH-type transcriptional regulator SgrR	NA	NA	NA	NA
WP_002224086.1\|1352986_1354168_+	MFS transporter	NA	NA	NA	NA
WP_002210456.1\|1354408_1355011_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_002210455.1\|1355025_1356456_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_002210454.1\|1356457_1357549_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_002210453.1\|1357551_1359114_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_002210452.1\|1359436_1359652_-	hypothetical protein	NA	NA	NA	NA
WP_002216434.1\|1360330_1361287_+	transcriptional regulator LeuO	NA	NA	NA	NA
WP_002216437.1\|1361857_1363663_+	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	3.5e-38	23.2
WP_002209743.1\|1363737_1364946_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_011906411.1\|1365445_1367173_+	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.3e-58	29.2
WP_002424260.1\|1367145_1367670_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002213775.1\|1367868_1368327_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1544635 : 1621302

Escherichia_phage(25.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|1544635_1545094_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002209332.1\|1545336_1546761_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-40	27.9
WP_002209330.1\|1547066_1548596_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
WP_002209329.1\|1548609_1551273_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_002216080.1\|1551468_1552233_-	pyruvate dehydrogenase complex transcriptional repressor PdhR	NA	NA	NA	NA
WP_002209327.1\|1553095_1554493_+	amino acid permease	NA	NA	NA	NA
WP_002209326.1\|1554925_1555780_-	beta-lactamase regulator AmpE	NA	NA	NA	NA
WP_002209325.1\|1556069_1556621_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	NA	NA	NA
WP_002209324.1\|1556733_1557642_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_002209323.1\|1557844_1558309_+	prepilin peptidase-dependent pilin	NA	NA	NA	NA
WP_002216083.1\|1558301_1559840_+	type II secretion system protein GspE	NA	NA	NA	NA
WP_002209321.1\|1559836_1561036_+	protein transport protein HofC	NA	NA	NA	NA
WP_002209320.1\|1561430_1562474_-	GMP reductase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	6.3e-104	56.2
WP_002209319.1\|1562769_1563390_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_002209318.1\|1563386_1564139_+	cell division protein ZapD	NA	NA	NA	NA
WP_002209317.1\|1564324_1564531_+	DNA gyrase inhibitor YacG	NA	NA	NA	NA
WP_002213759.1\|1564720_1565179_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_011901829.1\|1565289_1566312_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7
WP_001297096.1\|1566311_1567091_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002209465.1\|1567357_1568479_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_002228330.1\|1568583_1569741_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_002213759.1\|1570023_1570482_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209468.1\|1570813_1571176_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_002209469.1\|1571530_1572262_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002231132.1\|1572397_1573375_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_002209471.1\|1573376_1574108_+	polyphenol oxidase	NA	NA	NA	NA
WP_002217405.1\|1574237_1576811_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.4e-128	34.9
WP_002218887.1\|1577136_1577322_-	hypothetical protein	NA	NA	NA	NA
WP_002212076.1\|1583512_1584442_+	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_002212077.1\|1584862_1586461_+	malate synthase A	NA	NA	NA	NA
WP_002212078.1\|1586507_1587815_+	isocitrate lyase	NA	NA	NA	NA
WP_002212079.1\|1588070_1589798_+	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA
WP_002230619.1\|1589917_1590760_-	glyoxylate bypass operon transcriptional repressor IclR	NA	NA	NA	NA
WP_011906136.1\|1590974_1594670_+	methionine synthase	A0A140XBC7	Dickeya_phage	4.6e-24	82.5
WP_032485879.1\|1599743_1601432_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_011906137.1\|1601999_1603385_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_002212085.1\|1603754_1605401_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_011906138.1\|1605535_1605943_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_002212087.1\|1606085_1606976_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_002212088.1\|1606989_1608567_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_011906139.1\|1608753_1609965_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_002221973.1\|1610552_1610789_+	hypothetical protein	NA	NA	NA	NA
WP_002212091.1\|1610792_1611902_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	G9BWD6	Planktothrix_phage	5.0e-27	35.5
WP_002212092.1\|1611972_1613244_+	maltoporin	NA	NA	NA	NA
WP_002212093.1\|1613484_1614396_+	maltose operon protein MalM	NA	NA	NA	NA
WP_002212095.1\|1614866_1615145_+	hypothetical protein	NA	NA	NA	NA
WP_002212097.1\|1615296_1615815_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002212098.1\|1616338_1616836_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002230616.1\|1616903_1618385_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002212100.1\|1618391_1618832_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_100067904.1\|1619947_1621302_-\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7

DBSCAN-SWA_3

1717325 : 1779621

uncultured_Mediterranean_phage(18.18%)

tail,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210082.1\|1717325_1718771_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_002210083.1\|1718973_1721832_-	RHS repeat protein	NA	NA	NA	NA
WP_002228695.1\|1721856_1724697_-	RHS repeat protein	NA	NA	NA	NA
WP_002210086.1\|1724897_1725257_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_011906147.1\|1725253_1725655_-	M15 family metallopeptidase	A0A249XWK9	Proteus_phage	1.1e-35	60.2
WP_002214300.1\|1725667_1725970_-	hypothetical protein	NA	NA	NA	NA
WP_002210089.1\|1726103_1730594_-	toxin	NA	NA	NA	NA
WP_002220204.1\|1730650_1734244_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_002210090.1\|1734284_1736786_-	toxin	NA	NA	NA	NA
WP_002214297.1\|1737021_1737888_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002210092.1\|1738148_1739060_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002210093.1\|1739362_1739566_+	AaeX family protein	NA	NA	NA	NA
WP_002210094.1\|1739573_1740509_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002210095.1\|1740510_1742466_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002214288.1\|1744395_1744869_+	ribonuclease Ba	NA	NA	NA	NA
WP_002210098.1\|1744873_1745155_+	ribonuclease inhibitor	NA	NA	NA	NA
WP_002210099.1\|1745266_1745815_-	ribosome-associated protein	NA	NA	NA	NA
WP_002210100.1\|1745995_1747336_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_011055205.1\|1747584_1748229_+	hypothetical protein	A0A1B0VBK8	Salmonella_phage	3.4e-52	49.0
WP_002210102.1\|1748436_1748823_+	cytochrome b562	NA	NA	NA	NA
WP_002210103.1\|1749046_1749457_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_002210104.1\|1749809_1751477_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_002215779.1\|1751571_1752987_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_002210106.1\|1753397_1754351_-	HTH-type transcriptional regulator TreR	NA	NA	NA	NA
WP_002210107.1\|1754584_1755061_-	hypothetical protein	NA	NA	NA	NA
WP_002210109.1\|1755359_1755746_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_002210110.1\|1755883_1756348_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_002210111.1\|1756359_1757295_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	1.5e-48	38.5
WP_002210112.1\|1757632_1757905_-	PTS phosphocarrier protein NPr	NA	NA	NA	NA
WP_002210113.1\|1757901_1758756_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-05	30.0
WP_002213952.1\|1759061_1759544_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_002210115.1\|1759972_1761406_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_011906149.1\|1761467_1762193_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-22	28.4
WP_002210117.1\|1762199_1762745_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
WP_002218352.1\|1762728_1763292_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_002228203.1\|1763288_1763852_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	9.6e-59	83.0
WP_002210119.1\|1763960_1764947_-	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	6.0e-40	30.8
WP_002210120.1\|1765057_1766032_-	calcium/sodium antiporter	NA	NA	NA	NA
WP_002210121.1\|1766296_1767115_+	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	2.2e-19	31.7
WP_002210122.1\|1767332_1768115_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_002210123.1\|1768119_1768677_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_002210124.1\|1768689_1769313_+	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_002210125.1\|1769348_1769651_+	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA
WP_002210126.1\|1769797_1770052_+	BolA family iron metabolism protein IbaG	NA	NA	NA	NA
WP_002210127.1\|1770205_1771468_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002210128.1\|1771648_1772737_-	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IRD3	uncultured_Mediterranean_phage	2.1e-09	31.8
WP_002213775.1\|1772962_1773421_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002218066.1\|1773537_1774911_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	7.4e-20	28.2
WP_002210130.1\|1775181_1775586_-	DUF1043 family protein	NA	NA	NA	NA
WP_002210131.1\|1775809_1776937_+	cell division protein ZapE	NA	NA	NA	NA
WP_002210132.1\|1777249_1777678_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_002210133.1\|1777692_1778085_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_002230558.1\|1778081_1778279_-	hypothetical protein	NA	NA	NA	NA
WP_002210135.1\|1778458_1779100_+	stringent starvation protein A	NA	NA	NA	NA
WP_002216203.1\|1779105_1779621_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.6e-28	55.6

DBSCAN-SWA_4

2001767 : 2082733

Staphylococcus_phage(22.22%)

plate,protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002215902.1\|2001767_2002418_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002215900.1\|2002868_2003264_+	lipoprotein	NA	NA	NA	NA
WP_002213014.1\|2005539_2006040_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_041175540.1\|2006082_2007633_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002211664.1\|2007644_2008997_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002210015.1\|2008993_2009680_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002228049.1\|2009679_2011416_+	OmpA family protein	NA	NA	NA	NA
WP_002210014.1\|2011419_2011911_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002210013.1\|2012328_2014977_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.8e-92	29.5
WP_011906172.1\|2014973_2017322_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.2e-17	32.9
WP_002210009.1\|2017337_2019635_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002210008.1\|2019621_2020389_+	hypothetical protein	NA	NA	NA	NA
WP_086016632.1\|2020484_2021181_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.3e-60	48.5
WP_002210005.1\|2021789_2022425_+	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002210002.1\|2023753_2025916_+	ornithine decarboxylase SpeF	NA	NA	NA	NA
WP_002210001.1\|2026471_2027431_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002210000.1\|2027476_2028976_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-19	31.7
WP_002209999.1\|2029008_2029992_+	ABC transporter permease	NA	NA	NA	NA
WP_002209998.1\|2030074_2032108_-	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	4.5e-05	26.1
WP_002209997.1\|2032211_2033312_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002209995.1\|2033610_2034687_-	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_002230648.1\|2034869_2035142_-	oxidative damage protection protein	NA	NA	NA	NA
WP_002228057.1\|2035319_2036435_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002209991.1\|2036772_2037492_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_002209990.1\|2037491_2037818_+	YggL family protein	NA	NA	NA	NA
WP_002209989.1\|2037928_2038855_+	glutaminase B	NA	NA	NA	NA
WP_011906173.1\|2040195_2049528_+	virulence determinant	NA	NA	NA	NA
WP_002209987.1\|2049717_2050848_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_002215614.1\|2050840_2051434_-	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_002215612.1\|2051533_2051824_-	YggU family protein	NA	NA	NA	NA
WP_002209984.1\|2051820_2052375_-	YggT family protein	NA	NA	NA	NA
WP_002209983.1\|2052662_2053484_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_002215609.1\|2053616_2054315_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002209981.1\|2054334_2055459_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_002209980.1\|2055567_2056683_-	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	3.0e-96	50.7
WP_002209979.1\|2056686_2057571_-	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	3.1e-80	51.0
WP_002209978.1\|2057750_2058173_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_002209977.1\|2058172_2058736_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_002209976.1\|2058851_2059811_-	glutathione synthase	NA	NA	NA	NA
WP_002209975.1\|2059836_2060568_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_002209973.1\|2060819_2061527_-	deoxyribonuclease I	NA	NA	NA	NA
WP_002228653.1\|2061624_2062137_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_002209971.1\|2062329_2063484_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_002209969.1\|2064690_2066670_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002209968.1\|2066829_2067150_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_071525520.1\|2067183_2067294_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002209967.1\|2067439_2068192_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_002209965.1\|2068682_2070677_+	transketolase	NA	NA	NA	NA
WP_002213759.1\|2070984_2071443_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209964.1\|2071783_2072800_+	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_002209963.1\|2072902_2074066_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_002209962.1\|2074185_2075265_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_002209961.1\|2075702_2076572_+	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA
WP_002209960.1\|2076834_2077452_+	arginine exporter ArgO	NA	NA	NA	NA
WP_002209959.1\|2077641_2078421_+	oxidative stress defense protein	NA	NA	NA	NA
WP_002209958.1\|2078431_2079340_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_002209957.1\|2079681_2080338_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_002209956.1\|2080644_2081886_+	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	2.1e-98	46.5
WP_002213775.1\|2082274_2082733_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2392837 : 2460523

Escherichia_phage(28.57%)

plate,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|2392837_2393296_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_001297096.1\|2394456_2395236_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_011901829.1\|2395235_2396258_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7
WP_002211286.1\|2396891_2397080_+	hypothetical protein	NA	NA	NA	NA
WP_002220006.1\|2397345_2397864_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_032485934.1\|2397932_2399684_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_002226586.1\|2399894_2400350_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_002213775.1\|2400518_2400977_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002213066.1\|2401167_2402229_-	porin OmpA	NA	NA	NA	NA
WP_002213065.1\|2402586_2403093_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_002213064.1\|2403321_2403957_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_002213063.1\|2404058_2406197_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_002213062.1\|2406226_2406673_-	YccF domain-containing protein	NA	NA	NA	NA
WP_002221095.1\|2406866_2408921_+	DNA helicase IV	A7KV33	Bacillus_phage	1.5e-16	25.8
WP_002213060.1\|2408981_2409446_-	methylglyoxal synthase	NA	NA	NA	NA
WP_002213058.1\|2409624_2410305_-	DUF2057 family protein	NA	NA	NA	NA
WP_002213056.1\|2410620_2411037_+	CoA-binding protein	NA	NA	NA	NA
WP_002213054.1\|2411145_2411463_-	heat shock protein HspQ	NA	NA	NA	NA
WP_002213052.1\|2411523_2412714_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	W6LLI2	Streptococcus_phage	2.1e-26	28.1
WP_002213049.1\|2412807_2413086_+	acylphosphatase	NA	NA	NA	NA
WP_002213046.1\|2413137_2413467_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_002213039.1\|2417112_2419530_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002213038.1\|2419683_2420430_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.3e-14	31.4
WP_002213036.1\|2421160_2421379_+	hypothetical protein	NA	NA	NA	NA
WP_002213034.1\|2421642_2422167_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_002213032.1\|2422156_2423440_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_002213030.1\|2423441_2424179_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_011906264.1\|2424194_2425433_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_002213026.1\|2425425_2426145_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_002213025.1\|2426146_2426899_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_002213024.1\|2426901_2427690_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002228570.1\|2427776_2428217_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_002213017.1\|2428254_2428503_+	acyl carrier protein	NA	NA	NA	NA
WP_002213016.1\|2428601_2429450_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_002213014.1\|2430437_2430938_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002214707.1\|2430980_2432531_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002213011.1\|2432542_2433895_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002210015.1\|2433891_2434578_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002214568.1\|2434577_2436314_+	OmpA family protein	NA	NA	NA	NA
WP_002210014.1\|2436317_2436809_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002211927.1\|2437196_2439839_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.6e-92	31.6
WP_002211928.1\|2439841_2442190_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.5e-17	32.1
WP_013060322.1\|2442205_2444506_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002211930.1\|2444502_2445276_+	hypothetical protein	NA	NA	NA	NA
WP_002211931.1\|2445429_2445690_+	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002211932.1\|2445705_2447889_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002214564.1\|2448061_2448532_+	hypothetical protein	NA	NA	NA	NA
WP_002211935.1\|2450696_2451929_+	hypothetical protein	NA	NA	NA	NA
WP_002211936.1\|2451925_2455348_+	type VI secretion system membrane subunit	NA	NA	NA	NA
WP_002211937.1\|2455391_2456993_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_002211938.1\|2457010_2458069_+	PAAR domain protein	NA	NA	NA	NA
WP_002211939.1\|2458083_2458539_+	hypothetical protein	NA	NA	NA	NA
WP_002211940.1\|2458759_2460523_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_6

2957207 : 3052214

Escherichia_phage(12.5%)

tail,lysis,tRNA,integrase,transposase,terminase

attL 2967754:2967784|attR 3007566:3007596

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211184.1\|2957207_2957906_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_087768167.1\|2958643_2958751_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002220632.1\|2959285_2960974_+	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	3.0e-31	28.9
WP_002211181.1\|2961133_2962255_+	ribonuclease D	NA	NA	NA	NA
WP_002211180.1\|2962491_2962761_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_002211179.1\|2962764_2963577_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_002220631.1\|2963601_2964288_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_002211743.1\|2965008_2965281_+	hypothetical protein	NA	NA	NA	NA
WP_002215627.1\|2965421_2966507_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_002211740.1\|2966577_2967234_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_002211739.1\|2967336_2967783_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
2967754:2967784	attL	NA	NA	NA	NA
WP_002211738.1\|2967809_2969048_-\|integrase	site-specific integrase	Q20GI2	Phage_258-320	2.3e-121	53.3
WP_000255944.1\|2969117_2970140_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|2970139_2970919_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002215632.1\|2971086_2971347_-	excisionase family protein	Q859D3	Escherichia_coli_phage	1.7e-10	42.9
WP_071525537.1\|2971646_2972396_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	1.5e-54	48.5
WP_002211736.1\|2972371_2972818_+	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	3.9e-47	62.5
WP_002211735.1\|2972891_2973497_+	recombination protein NinG	A0A1P8DTE0	Proteus_phage	2.8e-56	56.9
WP_002215636.1\|2973497_2973887_+	antitermination protein	A0A1W6JNX1	Morganella_phage	1.4e-45	68.8
WP_002215638.1\|2973890_2974109_+	hypothetical protein	NA	NA	NA	NA
WP_002211732.1\|2974157_2974721_+	hypothetical protein	B6SD63	Bacteriophage	9.4e-30	58.0
WP_002211731.1\|2975144_2975354_+	hypothetical protein	NA	NA	NA	NA
WP_002215644.1\|2975350_2975626_-	hypothetical protein	NA	NA	NA	NA
WP_002430108.1\|2975871_2976069_+	hypothetical protein	B6SD15	Bacteriophage	4.9e-18	64.4
WP_002211730.1\|2976099_2976612_+	lysozyme	I6PBN2	Cronobacter_phage	9.7e-50	61.6
WP_002211729.1\|2976596_2977055_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	4.9e-21	45.3
WP_002211727.1\|2977600_2978314_+	hypothetical protein	Q5MBW0	Stx1-converting_phage	7.6e-69	60.2
WP_002211725.1\|2978770_2979406_+	hypothetical protein	I6S676	Salmonella_phage	7.2e-87	71.4
WP_002211724.1\|2979436_2979886_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.0e-47	72.9
WP_011906214.1\|2979895_2981386_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	7.8e-225	76.5
WP_002228445.1\|2981385_2982114_+	hypothetical protein	A0A1B0VMH0	Pseudomonas_phage	4.6e-61	51.4
WP_002228446.1\|2982132_2982774_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	3.8e-59	54.1
WP_002211721.1\|2982774_2983887_+	hypothetical protein	I6PD76	Cronobacter_phage	6.0e-121	58.2
WP_002211720.1\|2984008_2984782_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.8e-69	62.3
WP_002211719.1\|2984795_2986001_+	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	1.8e-142	79.2
WP_002211718.1\|2986048_2986531_+	hypothetical protein	G8C7P9	Escherichia_phage	6.4e-27	46.1
WP_002211717.1\|2986527_2986782_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.2e-18	53.1
WP_002211715.1\|2987136_2987721_+	hypothetical protein	G8C7Q1	Escherichia_phage	3.6e-48	52.1
WP_002211714.1\|2987717_2988125_+	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_002211713.1\|2988190_2989111_+\|tail	phage tail protein	I6PBN6	Cronobacter_phage	4.4e-61	49.1
WP_002211712.1\|2989123_2989435_+	hypothetical protein	I6PDG2	Cronobacter_phage	1.4e-30	58.3
WP_071525538.1\|2989482_2989743_+	hypothetical protein	A0A0S2SY90	Pseudomonas_phage	3.7e-13	50.0
WP_011906212.1\|2989743_2993259_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	5.2e-118	33.2
WP_002211710.1\|2993261_2993603_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.7e-21	50.0
WP_002213759.1\|2993908_2994367_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002213775.1\|2994618_2995077_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002211709.1\|2995196_2995949_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	9.4e-102	67.7
WP_002211708.1\|2995951_2996662_+	peptidase P60	K7P6F5	Enterobacteria_phage	1.3e-108	76.8
WP_002211706.1\|2997644_2998076_-	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	2.5e-30	58.4
WP_002211705.1\|2998199_2998367_+	hypothetical protein	G9L6D7	Escherichia_phage	5.2e-13	61.8
WP_002211704.1\|2998440_2999448_+	hypothetical protein	A0A2H4J0P1	uncultured_Caudovirales_phage	4.1e-36	33.0
WP_002214482.1\|2999546_3000098_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	9.5e-27	58.0
WP_002211701.1\|3000240_3000456_+	hypothetical protein	NA	NA	NA	NA
WP_002211700.1\|3000511_3001132_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	3.2e-55	57.0
WP_002359202.1\|3001306_3001528_-	hypothetical protein	NA	NA	NA	NA
WP_002211698.1\|3001703_3004907_+	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	60.5
WP_002211697.1\|3004906_3005905_+	hypothetical protein	NA	NA	NA	NA
WP_002211696.1\|3005921_3006839_+	hypothetical protein	NA	NA	NA	NA
WP_097608205.1\|3006900_3007269_+\|tail	phage tail protein	B6SCW7	Bacteriophage	5.0e-08	42.0
WP_002211693.1\|3008855_3010055_-	cysteine desulfurase	A0A1X7QGF3	Faustovirus	2.4e-38	29.6
3007566:3007596	attR	NA	NA	NA	NA
WP_002211692.1\|3010071_3010812_-	hypothetical protein	NA	NA	NA	NA
WP_002214494.1\|3011903_3012260_+	hypothetical protein	NA	NA	NA	NA
WP_002227934.1\|3012676_3013207_-	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_002211689.1\|3013442_3015017_-	sodium/proton antiporter NhaB	NA	NA	NA	NA
WP_002211688.1\|3015260_3015980_+	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_002211687.1\|3016197_3017733_-	SpoVR family protein	NA	NA	NA	NA
WP_011906208.1\|3018198_3019503_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_002216508.1\|3019518_3020721_-	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	7.6e-29	29.1
WP_002211685.1\|3020985_3021855_-	pirin family protein	NA	NA	NA	NA
WP_002211684.1\|3022052_3022958_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211683.1\|3022992_3024111_-	DMT family transporter	NA	NA	NA	NA
WP_002216501.1\|3024218_3025493_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.5e-11	37.1
WP_011906207.1\|3025642_3027577_-	protein kinase YeaG	NA	NA	NA	NA
WP_002430110.1\|3028020_3028770_+	MipA/OmpV family protein	NA	NA	NA	NA
WP_002211679.1\|3028842_3029718_-	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_011906206.1\|3030031_3031027_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002211677.1\|3031374_3031788_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_002217933.1\|3031858_3032131_+	YeaC family protein	NA	NA	NA	NA
WP_002211676.1\|3032264_3032912_-	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L6K4	Tupanvirus	1.8e-21	33.0
WP_002211675.1\|3032926_3033943_-	asparaginase	NA	NA	NA	NA
WP_011192431.1\|3034059_3035910_-	signal peptide peptidase SppA	NA	NA	NA	NA
WP_002211673.1\|3036072_3036624_+	NAD(P)H nitroreductase	NA	NA	NA	NA
WP_002211670.1\|3037840_3039766_+	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.2e-37	30.4
WP_002211669.1\|3039762_3040053_+	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_002211668.1\|3040065_3040452_-	pyrimidine (deoxy)nucleoside triphosphate diphosphatase	NA	NA	NA	NA
WP_002211667.1\|3040549_3041356_-	exodeoxyribonuclease III	NA	NA	NA	NA
WP_002211665.1\|3042165_3043026_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002209743.1\|3043244_3044453_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002230891.1\|3045089_3045938_-	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	7.0e-13	37.3
WP_002210666.1\|3046021_3046486_-	YchJ family protein	NA	NA	NA	NA
WP_002210665.1\|3047819_3048836_+	two-component system response regulator RssB	NA	NA	NA	NA
WP_002210664.1\|3049142_3050489_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-81	38.3
WP_002209743.1\|3051005_3052214_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

DBSCAN-SWA_7

3323529 : 3382369

Tupanvirus(18.18%)

coat,protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011906184.1\|3323529_3325917_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002211832.1\|3325930_3326914_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.6e-35	38.5
WP_152328947.1\|3327270_3327318_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_002211833.1\|3327412_3327769_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_002211834.1\|3327806_3328004_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_002227898.1\|3328100_3328652_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_002211836.1\|3328655_3330584_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-127	37.1
WP_002216696.1\|3330974_3331187_+	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	9.9e-09	42.0
WP_002211839.1\|3331945_3332197_-	hypothetical protein	NA	NA	NA	NA
WP_002211840.1\|3332515_3333199_+	MarC family NAAT transporter	NA	NA	NA	NA
WP_002216686.1\|3333320_3333983_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_002211842.1\|3334194_3335163_+	iron/manganese ABC transporter substrate-binding protein YfeA	NA	NA	NA	NA
WP_002211843.1\|3335159_3336050_+	iron/manganese ABC transporter ATP-binding protein YfeB	A0A1V0SKJ1	Klosneuvirus	2.9e-09	27.5
WP_002211844.1\|3336049_3336934_+	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA
WP_002211845.1\|3336930_3337824_+	iron/manganese ABC transporter permease subunit YfeD	NA	NA	NA	NA
WP_002216683.1\|3337891_3338104_+	hypothetical protein	NA	NA	NA	NA
WP_002211846.1\|3338128_3339004_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_002211847.1\|3339132_3339687_-	yfeABCD regulator yfeE	NA	NA	NA	NA
WP_002220277.1\|3340097_3340763_+	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_002209743.1\|3340997_3342206_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210828.1\|3342253_3342604_-	cupin domain-containing protein	NA	NA	NA	NA
WP_002210829.1\|3342939_3343776_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_002210830.1\|3343867_3344629_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-20	32.9
WP_002210831.1\|3344964_3346632_+	pectate disaccharide-lyase	NA	NA	NA	NA
WP_002210832.1\|3346672_3347563_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_002210833.1\|3347555_3348476_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_002210834.1\|3348489_3349617_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.6e-12	26.5
WP_002210835.1\|3349632_3350925_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210836.1\|3351222_3351933_+	porin	NA	NA	NA	NA
WP_002210837.1\|3352502_3353051_+	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	4.0e-09	32.9
WP_002210838.1\|3353254_3354646_+	L-cystine transporter	NA	NA	NA	NA
WP_002210839.1\|3354860_3355712_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.3e-11	28.8
WP_002210840.1\|3356096_3356888_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_002210841.1\|3357074_3358241_-	oligogalacturonate lyase	NA	NA	NA	NA
WP_002210842.1\|3358567_3359935_+	MFS transporter	NA	NA	NA	NA
WP_002210843.1\|3359988_3360792_-	molecular chaperone	NA	NA	NA	NA
WP_002215120.1\|3360788_3361952_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_002210844.1\|3361948_3364561_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002215118.1\|3364642_3365422_-	fimbrial chaperone	NA	NA	NA	NA
WP_002210846.1\|3365574_3366117_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_002210847.1\|3366774_3367656_-\|protease	protease HtpX	NA	NA	NA	NA
WP_002210848.1\|3368110_3370183_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	4.0e-86	34.8
WP_002210849.1\|3370202_3370916_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_002210850.1\|3371011_3371509_-	GAF domain-containing protein	NA	NA	NA	NA
WP_002367629.1\|3371740_3372988_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_002216616.1\|3372956_3375608_+	PqiB family protein	NA	NA	NA	NA
WP_002210852.1\|3376087_3376642_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216613.1\|3376647_3377178_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216611.1\|3377198_3377756_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002210856.1\|3377786_3378539_+	molecular chaperone	NA	NA	NA	NA
WP_002210857.1\|3378726_3381174_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_011906287.1\|3381379_3382369_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_8

4126841 : 4197462

Vibrio_phage(16.67%)

tail,transposase,coat,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213759.1\|4126841_4127300_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002208786.1\|4127498_4129010_-	amino acid permease	NA	NA	NA	NA
WP_002208788.1\|4129267_4130140_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002208790.1\|4130797_4131886_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_002208791.1\|4132049_4132907_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	6.9e-24	31.0
WP_002208792.1\|4132977_4135449_-	fimbrial biogenesis usher protein PsaC	NA	NA	NA	NA
WP_002208793.1\|4135532_4136354_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_002208794.1\|4136480_4136957_-	adhesin PsaA	NA	NA	NA	NA
WP_002216523.1\|4137501_4137990_-	protein PsaF	NA	NA	NA	NA
WP_002208796.1\|4137986_4138631_-	transcriptional regulator	NA	NA	NA	NA
WP_002208797.1\|4138955_4140656_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_002208798.1\|4140670_4141609_-	1-phosphofructokinase	NA	NA	NA	NA
WP_002208799.1\|4141605_4142739_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_002208801.1\|4143000_4143456_+	NUDIX domain-containing protein	D9ICN3	Escherichia_virus	2.9e-05	44.3
WP_002208802.1\|4143568_4144567_-	ABC transporter permease	NA	NA	NA	NA
WP_002208803.1\|4144602_4146177_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.9e-12	25.8
WP_002208804.1\|4146285_4147374_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002208805.1\|4147489_4148200_-	ribose 5-phosphate isomerase A	NA	NA	NA	NA
WP_002208806.1\|4148219_4149773_-	xylulokinase	NA	NA	NA	NA
WP_002208807.1\|4149776_4151273_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002208808.1\|4151623_4152766_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_002230767.1\|4152762_4153728_+	C-terminal binding protein	A0A1J0F959	Only_Syngen_Nebraska_virus	5.2e-28	30.3
WP_002208810.1\|4153738_4154554_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	8.8e-13	32.6
WP_002208811.1\|4154622_4154877_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_002208812.1\|4155251_4156496_+	tryptophan permease	NA	NA	NA	NA
WP_002228019.1\|4156599_4157172_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_002208813.1\|4157311_4158505_-	mannonate dehydratase	NA	NA	NA	NA
WP_002224659.1\|4159108_4160581_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	4.9e-46	32.5
WP_002208819.1\|4162261_4163245_+	GTP-binding protein	NA	NA	NA	NA
WP_002208820.1\|4163303_4164005_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_002208822.1\|4164446_4165031_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	2.8e-13	39.8
WP_071525527.1\|4165681_4167199_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_002208825.1\|4167280_4169089_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002208826.1\|4169098_4170199_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_002208827.1\|4170198_4171227_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_002208828.1\|4171228_4172821_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	1.3e-20	32.8
WP_002208829.1\|4172881_4173226_-	hypothetical protein	NA	NA	NA	NA
WP_002208831.1\|4174210_4175410_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	1.3e-23	25.1
WP_002208832.1\|4175513_4176221_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_002208833.1\|4176754_4178512_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	2.3e-98	42.4
WP_002208834.1\|4178673_4178958_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_002213775.1\|4179096_4179555_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002208835.1\|4179755_4180760_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	3.1e-84	47.7
WP_002208836.1\|4180937_4181165_+	YejL family protein	NA	NA	NA	NA
WP_002208837.1\|4181192_4182989_+	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_002230704.1\|4183219_4183603_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	7.8e-36	66.7
WP_002208839.1\|4183959_4185108_+	HNH endonuclease	NA	NA	NA	NA
WP_002208840.1\|4185120_4185609_+	hypothetical protein	NA	NA	NA	NA
WP_002208841.1\|4186308_4186671_+	hypothetical protein	NA	NA	NA	NA
WP_002208842.1\|4186796_4188233_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002208843.1\|4188523_4189264_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_002208845.1\|4189561_4190341_-\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	7.1e-52	52.4
WP_002208846.1\|4190437_4190785_-	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	6.4e-21	41.3
WP_002215458.1\|4190781_4191042_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_002208847.1\|4191038_4192175_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	4.5e-31	30.5
WP_002208848.1\|4192178_4192634_-	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002208850.1\|4193243_4194299_-\|tail	tail protein	M1PVV2	Vibrio_phage	1.3e-37	27.2
WP_002208852.1\|4194295_4195702_-	hypothetical protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_002208853.1\|4195968_4197462_-\|coat	coat protein	NA	NA	NA	NA

DBSCAN-SWA_9

4200640 : 4210655

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002208859.1\|4200640_4200931_-	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_002208860.1\|4201527_4202322_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_002208861.1\|4202297_4203110_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_116463120.1\|4203112_4203808_-	aldolase	A0A077SK32	Escherichia_phage	5.9e-58	55.4
WP_002208862.1\|4203840_4205145_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-90	46.0
WP_002215470.1\|4205355_4205835_-	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_002208864.1\|4206108_4206831_+	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_002208866.1\|4207036_4207279_+	DinI family protein	K7PKR6	Enterobacteria_phage	6.9e-22	65.0
WP_002208867.1\|4207450_4208386_+	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA
WP_011906348.1\|4208867_4210655_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5

DBSCAN-SWA_10

4233748 : 4290397

Enterobacteria_phage(16.67%)

protease,transposase,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210815.1\|4233748_4234258_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_002210814.1\|4234315_4235509_-	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA
WP_002221775.1\|4236127_4237336_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_002210812.1\|4237592_4238135_-	membrane protein	NA	NA	NA	NA
WP_002228030.1\|4238492_4239935_+	catalase	A0A2K9L0T1	Tupanvirus	4.9e-99	38.8
WP_002210810.1\|4240002_4242183_-	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	1.1e-44	26.3
WP_002210809.1\|4242452_4243568_+	porin OmpF2	Q1MVN1	Enterobacteria_phage	2.1e-110	54.5
WP_002210807.1\|4243979_4244870_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_002210806.1\|4244994_4245198_+	hypothetical protein	NA	NA	NA	NA
WP_002209743.1\|4246422_4247631_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210804.1\|4249014_4250349_-	arginine/agmatine antiporter	NA	NA	NA	NA
WP_002353933.1\|4250898_4251597_-	ABC transporter permease	NA	NA	NA	NA
WP_002210802.1\|4251731_4252670_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.4e-23	33.5
WP_002210801.1\|4252666_4253821_-	ABC transporter permease	NA	NA	NA	NA
WP_011191984.1\|4254081_4255014_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210799.1\|4255749_4256604_+	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_002210798.1\|4256821_4258237_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_002210797.1\|4258260_4259118_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_002223523.1\|4259232_4259931_-	urea ABC transporter ATP-binding subunit UrtE	A0A2H4PQG7	Staphylococcus_phage	6.4e-12	25.6
WP_032465620.1\|4260024_4260795_-	urea ABC transporter ATP-binding protein UrtD	A0A285PWH2	Cedratvirus	3.9e-10	28.2
WP_002210794.1\|4260857_4261934_-	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_002210793.1\|4261933_4263535_-	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_002210792.1\|4263658_4264927_-	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210791.1\|4265354_4265828_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.7e-37	50.7
WP_002210790.1\|4266073_4266955_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_002210789.1\|4266957_4267818_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_011906354.1\|4267920_4268850_-	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210787.1\|4268886_4269723_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.1e-17	30.1
WP_002210786.1\|4269930_4270179_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_002210785.1\|4270363_4271467_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_011906355.1\|4271779_4272121_+	HNH nuclease family protein	NA	NA	NA	NA
WP_002210782.1\|4272146_4272686_-	class IV adenylate cyclase	NA	NA	NA	NA
WP_002210781.1\|4272895_4274608_+	D-lactate dehydrogenase	NA	NA	NA	NA
WP_002210780.1\|4274728_4275664_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_002210778.1\|4276002_4276182_+	hypothetical protein	NA	NA	NA	NA
WP_002228612.1\|4276255_4277194_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_002210776.1\|4277493_4278423_-	DUF4097 domain-containing protein	NA	NA	NA	NA
WP_002213759.1\|4278837_4279296_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002214195.1\|4280224_4281088_-	xanthosine phosphorylase	Q5YBA4	Grouper_iridovirus	2.3e-51	40.7
WP_002214197.1\|4281433_4282282_+	DMT family transporter	NA	NA	NA	NA
WP_002214199.1\|4282319_4283213_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002228035.1\|4283444_4285493_-\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	1.4e-19	28.5
WP_002218278.1\|4285857_4286454_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_002218281.1\|4286511_4287984_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_011906357.1\|4288006_4289710_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.0e-55	31.4
WP_011906358.1\|4289938_4290397_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

4360923 : 4370065

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210709.1\|4360923_4361124_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.6e-08	51.7
WP_002215949.1\|4361123_4361666_+	ash family protein	NA	NA	NA	NA
WP_011906363.1\|4361658_4362618_+	toprim domain-containing protein	A0A1W6JPG0	Morganella_phage	2.8e-50	41.0
WP_002210707.1\|4362614_4363703_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.4e-114	60.4
WP_002210705.1\|4364051_4364366_-	putative addiction module antidote protein	NA	NA	NA	NA
WP_002215951.1\|4364371_4364689_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.0e-13	48.1
WP_011901829.1\|4365293_4366316_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7
WP_001297096.1\|4366315_4367095_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002215393.1\|4367987_4368173_+	hypothetical protein	NA	NA	NA	NA
WP_002212204.1\|4368335_4368587_-	hypothetical protein	NA	NA	NA	NA
WP_002215390.1\|4369297_4370065_+	esterase	G1DB77	Mycobacterium_phage	3.4e-06	36.0

Anti-CRISPR protein detection

Acr_ID: NZ_CP009715.1|WP_002214494.1|3011903_3012260_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP009715.1|WP_002214494.1|3011903_3012260_+|hypothetical-protein

3011903_3012260_+

118 aa aa

HTH_GNTR

Identity	Hit_domain_coverage
0.4166666666666667	1.0

2957207-3052214

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP009715_4	Orphan	4.1\|2546425\|32\|NZ_CP009715\|PILER-CR,CRISPRCasFinder,CRT	2546425-2546456	32	2982734-2982765
NZ_CP009715_4	Orphan	4.2\|2546485\|33\|NZ_CP009715\|PILER-CR,CRISPRCasFinder,CRT	2546485-2546517	33	2982324-2982356
NZ_CP009715_6	Orphan	6.1\|4439956\|32\|NZ_CP009715\|CRISPRCasFinder,CRT	4439956-4439987	32	2983799-2983768
NZ_CP009715_6	Orphan	6.5\|4440198\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	4440198-4440229	32	2984226-2984257
NZ_CP009715_6	Orphan	6.6\|4440258\|32\|NZ_CP009715\|CRISPRCasFinder,CRT,PILER-CR	4440258-4440289	32	2983390-2983359

1. spacer 4.1|2546425|32|NZ_CP009715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009715 position: 2982734-2982765, mismatch: 0

acgaattgaaaaatcagagtcccagcctgaca	CRISPR spacer
acgaattgaaaaatcagagtcccagcctgaca	Protospacer
********************************

2. spacer 4.2|2546485|33|NZ_CP009715|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009715 position: 2982324-2982356, mismatch: 0

gtttaaccaagcgcagccaaacatgattgccaa	CRISPR spacer
gtttaaccaagcgcagccaaacatgattgccaa	Protospacer
*********************************

3. spacer 6.1|4439956|32|NZ_CP009715|CRISPRCasFinder,CRT matches to NZ_CP009715 position: 2983799-2983768, mismatch: 0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

4. spacer 6.5|4440198|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009715 position: 2984226-2984257, mismatch: 0

cggacgcggtgaaaactatcctgcaacgattc	CRISPR spacer
cggacgcggtgaaaactatcctgcaacgattc	Protospacer
********************************

5. spacer 6.6|4440258|32|NZ_CP009715|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009715 position: 2983390-2983359, mismatch: 0

tatgagtgacagccgttttcaccaccgccgtg	CRISPR spacer
tatgagtgacagccgttttcaccaccgccgtg	Protospacer
********************************

2. NZ_CP009714

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 63978

Salmonella_phage(95.16%)

tail,transposase,integrase,terminase

attL 57763:57780|attR 70819:70836

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211773.1\|3479_4067_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	5.1e-103	92.8
WP_002211774.1\|4054_4852_-\|tail	tail protein	J9Q7R4	Salmonella_phage	1.4e-156	96.2
WP_011901831.1\|4844_5543_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	6.4e-137	99.6
WP_000440566.1\|5632_5968_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_002211776.1\|6009_10587_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	90.5
WP_000952684.1\|10594_10819_-	hypothetical protein	J9Q7F7	Salmonella_phage	4.2e-34	100.0
WP_000163862.1\|10944_11262_-	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_002211778.1\|11321_12068_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	5.2e-129	98.8
WP_002211779.1\|12142_12526_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.1e-66	98.4
WP_002211780.1\|12527_13001_-	hypothetical protein	J9Q711	Salmonella_phage	8.9e-82	99.4
WP_001027662.1\|12991_13336_-	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_002211781.1\|13433_14267_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.9e-152	99.6
WP_002211782.1\|14266_14701_-	hypothetical protein	J9Q7Y3	Salmonella_phage	3.1e-73	99.3
WP_002211783.1\|14744_15407_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	8.5e-107	97.2
WP_002211784.1\|15481_16357_-	hypothetical protein	J9Q710	Salmonella_phage	8.5e-163	99.7
WP_002231160.1\|16383_17280_-	hypothetical protein	J9Q7F4	Salmonella_phage	3.9e-147	96.3
WP_025476623.1\|17302_18877_-	hypothetical protein	J9Q7R1	Salmonella_phage	6.4e-302	99.4
WP_002211787.1\|18910_20167_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_002211788.1\|20169_20811_-	hypothetical protein	J9Q6D4	Salmonella_phage	1.2e-108	98.1
WP_000176291.1\|21006_21273_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_002211789.1\|21282_22173_-	hypothetical protein	J9Q7I6	Salmonella_phage	6.2e-169	99.7
WP_002211790.1\|22178_22433_-	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	97.6
WP_002211791.1\|22425_23064_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	4.7e-110	98.1
WP_002211792.1\|23060_23729_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	9.5e-114	98.2
WP_002228791.1\|23728_24427_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	9.6e-125	98.7
WP_002211794.1\|24495_26055_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	1.1e-293	99.0
WP_002214131.1\|26057_26336_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.4e-41	97.8
WP_002211796.1\|26395_26818_+	hypothetical protein	J9Q806	Salmonella_phage	4.1e-62	85.0
WP_002214134.1\|26822_27350_+	transcriptional regulator	J9Q6L0	Salmonella_phage	6.4e-81	98.0
WP_002211799.1\|27673_28324_+	hypothetical protein	J9Q754	Salmonella_phage	4.1e-114	99.5
WP_002214137.1\|28408_28636_+	hypothetical protein	NA	NA	NA	NA
WP_002213759.1\|28861_29320_+\|transposase	IS200/IS605-like element IS1541A family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002211801.1\|29995_30478_-	hypothetical protein	J9Q805	Salmonella_phage	5.1e-85	94.4
WP_002211802.1\|30683_30965_-	hypothetical protein	J9Q753	Salmonella_phage	6.1e-46	93.5
WP_002213775.1\|31164_31623_-\|transposase	IS200/IS605-like element IS1541B family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_011901832.1\|31861_32617_-	hypothetical protein	J9Q742	Salmonella_phage	3.8e-135	98.4
WP_002231164.1\|32815_33958_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	1.7e-219	100.0
WP_002231165.1\|34065_36381_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	98.8
WP_011201798.1\|36458_37028_-	hypothetical protein	J9Q7Z7	Salmonella_phage	3.8e-103	99.5
WP_002213303.1\|37040_37787_-	hypothetical protein	J9Q6J5	Salmonella_phage	4.1e-134	96.4
WP_038918515.1\|37776_38136_-	hypothetical protein	J9Q741	Salmonella_phage	5.2e-58	100.0
WP_002213300.1\|39922_41008_-	exonuclease	J9Q7S9	Salmonella_phage	7.7e-206	98.6
WP_002213298.1\|41423_42446_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002389821.1\|42805_43030_-	hypothetical protein	J9Q739	Salmonella_phage	1.5e-34	97.3
WP_002214164.1\|44214_45279_+	replication protein RepA	J9Q7H0	Salmonella_phage	2.4e-188	98.6
WP_002222711.1\|45847_46060_-	hypothetical protein	J9Q7S8	Salmonella_phage	6.8e-34	95.7
WP_002227818.1\|46059_46395_-	hypothetical protein	J9Q7Z5	Salmonella_phage	5.2e-52	91.0
WP_002228796.1\|46391_46571_-	hypothetical protein	J9Q6J1	Salmonella_phage	5.8e-18	86.4
WP_002228797.1\|46611_46887_-	hypothetical protein	J9Q738	Salmonella_phage	1.7e-45	95.6
WP_002222869.1\|46954_47365_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.1e-75	97.8
WP_002222868.1\|47348_47720_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	4.0e-61	87.8
WP_002222866.1\|47873_48704_-	hypothetical protein	J9Q7Z4	Salmonella_phage	9.3e-127	98.6
WP_002213439.1\|48707_48908_-	hypothetical protein	J9Q6J0	Salmonella_phage	1.1e-25	97.0
WP_161597819.1\|48998_50030_-	recombinase	J9Q736	Salmonella_phage	6.9e-196	99.1
WP_000920226.1\|50077_50344_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_002225551.1\|50343_51288_-	exonuclease	J9Q7S6	Salmonella_phage	1.3e-180	99.0
WP_002213132.1\|51348_52377_-	hypothetical protein	J9Q7Z3	Salmonella_phage	1.3e-165	98.5
WP_002213135.1\|52496_52928_-	hypothetical protein	J9Q6I8	Salmonella_phage	2.6e-72	98.6
WP_002215095.1\|53148_53400_+	hypothetical protein	NA	NA	NA	NA
WP_011201800.1\|53472_54036_+	DNA-binding protein	J9Q7G7	Salmonella_phage	2.6e-64	65.1
WP_002425587.1\|54065_54491_-	hypothetical protein	J9Q7S4	Salmonella_phage	7.5e-72	100.0
WP_002221186.1\|54505_58030_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.2
57763:57780	attL	NA	NA	NA	NA
WP_002211767.1\|58210_59446_-	AAA domain-containing protein	J9Q733	Salmonella_phage	3.0e-238	99.3
WP_002211766.1\|59542_61909_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	94.4
WP_002228800.1\|62018_62231_-	hypothetical protein	NA	NA	NA	NA
WP_002228802.1\|62493_62880_+	hypothetical protein	NA	NA	NA	NA
WP_002353208.1\|62874_63978_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	5.2e-24	30.9
70819:70836	attR	NA	NA	NA	NA

DBSCAN-SWA_2

70378 : 135753

Salmonella_phage(33.33%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002224363.1\|70378_70684_-	hypothetical protein	J9Q7S1	Salmonella_phage	3.2e-48	97.0
WP_002224361.1\|70829_71045_-	hypothetical protein	J9Q6I3	Salmonella_phage	7.7e-33	98.6
WP_011901835.1\|71204_72527_-	DNA ligase	J9Q7G5	Salmonella_phage	8.1e-258	98.9
WP_016256030.1\|72561_72819_-	hypothetical protein	J9Q7R9	Salmonella_phage	3.4e-35	95.3
WP_002224265.1\|73119_73914_-	hypothetical protein	J9Q7Z0	Salmonella_phage	3.7e-141	96.6
WP_002224263.1\|74166_74889_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_002209743.1\|74922_76131_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_011901836.1\|76251_79071_-	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
WP_011201821.1\|79070_80444_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_011901837.1\|80440_80986_-	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_011901838.1\|80975_81224_-	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA
WP_011201818.1\|81240_81990_-	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
WP_016674191.1\|82020_82209_-	hypothetical protein	NA	NA	NA	NA
WP_011201817.1\|82240_84091_-	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
WP_016674192.1\|84087_84717_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_032485960.1\|84733_85720_-	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA
WP_011901841.1\|85722_86370_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_011201813.1\|86369_86717_-	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA
WP_011901842.1\|86713_89344_-	type IV secretion system protein TraC	NA	NA	NA	NA
WP_011201812.1\|89336_89903_-	conjugal transfer protein TraP	NA	NA	NA	NA
WP_016674193.1\|89892_90297_-	hypothetical protein	NA	NA	NA	NA
WP_016674194.1\|90280_90466_-	hypothetical protein	NA	NA	NA	NA
WP_016674195.1\|90469_90694_-	molecular chaperone DnaK	NA	NA	NA	NA
WP_011201809.1\|90813_91353_-	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA
WP_011901843.1\|91374_92769_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_011201807.1\|92755_93499_-	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_011201806.1\|93485_94052_-	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_011201805.1\|94066_94372_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_011901844.1\|94522_94873_-	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
WP_071589830.1\|94930_95059_-	TraY domain-containing protein	NA	NA	NA	NA
WP_002209743.1\|95082_96291_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_016674166.1\|96372_98484_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_011901846.1\|98483_103724_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_011901847.1\|103725_104463_+	type-F conjugative transfer system pilin acetylase TraX	NA	NA	NA	NA
WP_008324922.1\|104529_105249_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_011901848.1\|105241_106033_+	DsbA family protein	NA	NA	NA	NA
WP_011201827.1\|106180_106735_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	7.8e-21	33.1
WP_100228227.1\|106712_106856_+	hypothetical protein	NA	NA	NA	NA
WP_011201829.1\|107074_107152_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_086028848.1\|107132_108008_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_002211760.1\|109214_110237_+\|transposase	IS110-like element IS1618 family transposase	NA	NA	NA	NA
WP_002211758.1\|112312_114076_-	phospholipase D	NA	NA	NA	NA
WP_002211757.1\|114153_114642_-	phospholipase D family protein	NA	NA	NA	NA
WP_002211756.1\|115380_115656_+	hypothetical protein	NA	NA	NA	NA
WP_002215065.1\|115678_116620_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.0e-68	54.8
WP_002211754.1\|116685_117306_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	6.5e-08	31.1
WP_002215068.1\|117505_117832_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002211753.1\|117831_118059_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_002211752.1\|118360_119566_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
WP_002215070.1\|119562_120534_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.5e-112	67.3
WP_002228775.1\|120912_122310_+	AAA family ATPase	NA	NA	NA	NA
WP_002211750.1\|122471_122672_-	hypothetical protein	NA	NA	NA	NA
WP_002211749.1\|123172_123850_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.9
WP_002211748.1\|123849_124071_+	hypothetical protein	NA	NA	NA	NA
WP_002215082.1\|124081_124501_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_002211747.1\|124554_125334_+	hypothetical protein	NA	NA	NA	NA
WP_002211746.1\|125732_126239_+	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	1.1e-08	29.5
WP_002211745.1\|126951_127182_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_002211744.1\|127254_129264_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	7.7e-26	30.3
WP_002211769.1\|131295_131904_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.8e-64	62.2
WP_002211770.1\|132205_135094_-\|tail	phage tail protein	J9Q6E3	Salmonella_phage	4.5e-11	33.1
WP_002211771.1\|135174_135753_-	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	3.4e-27	38.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009713

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 47958

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042469136.1\|3334_3604_-\|transposase	transposase	NA	NA	NA	NA
WP_002213246.1\|3672_4131_+	hypothetical protein	NA	NA	NA	NA
WP_002213008.1\|4302_4620_+\|transposase	transposase	NA	NA	NA	NA
WP_002213294.1\|4643_5051_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_002233137.1\|5467_5716_+	phospholipase	A0A1B2LRT6	Wolbachia_phage	9.2e-06	47.1
WP_002229817.1\|5853_6108_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_002233140.1\|6349_6424_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_002213292.1\|6404_7283_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_002213291.1\|8455_8695_+	hypothetical protein	NA	NA	NA	NA
WP_002233145.1\|9440_9869_+	hypothetical protein	NA	NA	NA	NA
WP_002213290.1\|9886_12085_+	T3SS effector protein kinase YopO/YpkA	NA	NA	NA	NA
WP_002213287.1\|12480_13347_+	type III secretion system effector acetyltransferase YopJ	NA	NA	NA	NA
WP_011901819.1\|15029_16436_+	T3SS effector protein-tyrosine-phosphatase YopH	NA	NA	NA	NA
WP_001297096.1\|17150_17930_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|17929_18952_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002212907.1\|20484_20832_-	type III secretion system exported negative regulator LcrQ/YscM1	NA	NA	NA	NA
WP_002212909.1\|21056_21689_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA
WP_002361471.1\|21667_22297_-	type III secretion system sorting platform protein YscK	NA	NA	NA	NA
WP_002212912.1\|22296_23031_-	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA
WP_002212914.1\|23037_23385_-	type III secretion system inner rod subunit SctI	NA	NA	NA	NA
WP_002212915.1\|23385_23883_-	YopR family type III secretion effector	NA	NA	NA	NA
WP_011901822.1\|23879_24227_-	YscG family type III secretion protein	NA	NA	NA	NA
WP_002212916.1\|24228_24492_-	type III secretion system needle filament subunit SctF	NA	NA	NA	NA
WP_002212917.1\|24492_24693_-	EscE/YscE/SsaE family type III secretion system needle protein co-chaperone	NA	NA	NA	NA
WP_002212919.1\|24689_25949_-	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA
WP_002212923.1\|25945_27769_-	type III secretion system outer membrane ring subunit SctC	NA	NA	NA	NA
WP_002212925.1\|27774_28188_-	type III secretion system chaperone YscB	NA	NA	NA	NA
WP_002229797.1\|28413_28512_-	type III secretion system protein YscA	NA	NA	NA	NA
WP_002212931.1\|28590_29406_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002222527.1\|29529_29925_-	type III secretion system chaperone YscW	NA	NA	NA	NA
WP_011901823.1\|30499_31564_-	type III secretion system export apparatus switch protein YscU	NA	NA	NA	NA
WP_002212938.1\|31563_32349_-	type III secretion system export apparatus protein SctT	NA	NA	NA	NA
WP_002212945.1\|32345_32612_-	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA
WP_002212947.1\|32613_33267_-	type III secretion system export apparatus protein SctR	NA	NA	NA	NA
WP_002212948.1\|33263_34187_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA
WP_011901824.1\|34183_35551_-	type III secretion system needle length determinant	NA	NA	NA	NA
WP_002212952.1\|35550_36015_-	type III secretion system central stalk protein YscO	NA	NA	NA	NA
WP_011901825.1\|36011_37331_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA
WP_002212958.1\|37528_38410_+	type III secretion system gatekeeper subunit YopN	NA	NA	NA	NA
WP_002212965.1\|38390_38669_+	type III secretion system gatekeeper subunit TyeA	NA	NA	NA	NA
WP_002229794.1\|38655_39027_+	type III secretion chaperone SycN	NA	NA	NA	NA
WP_002212969.1\|39023_39392_+	type III secretion system protein YscX	NA	NA	NA	NA
WP_002229791.1\|39388_39733_+	type III secretion system chaperone YscY	NA	NA	NA	NA
WP_002212971.1\|39719_41834_+	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA
WP_002220918.1\|41830_42271_+	type III secretion system regulator LcrR	NA	NA	NA	NA
WP_002212973.1\|42312_42600_+	type III secretion protein LcrG	NA	NA	NA	NA
WP_011171995.1\|42601_43576_+	type III secretion system protein LcrV	NA	NA	NA	NA
WP_002222758.1\|43578_44085_+	type III secretion system chaperone LcrH	NA	NA	NA	NA
WP_002212985.1\|44062_45268_+	type III secretion system translocon subunit YopB	NA	NA	NA	NA
WP_002212987.1\|45286_46207_+	type III secretion system translocon subunit YopD	NA	NA	NA	NA
WP_002209743.1\|46749_47958_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

DBSCAN-SWA_2

58499 : 60628

Yersinia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002220902.1\|58499_59666_+	plasmid-partitioning protein SopA	Q7Y3Y6	Yersinia_phage	3.5e-196	85.3
WP_002213354.1\|59662_60628_+	ParB/RepB/Spo0J family plasmid partition protein	Q7Y3Y7	Yersinia_phage	3.1e-89	56.6

DBSCAN-SWA_3

64529 : 69751

Enterobacteria_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002220893.1\|64529_65702_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.6e-220	95.4
WP_002213267.1\|66476_66902_+	type III secretion system chaperone SycH	NA	NA	NA	NA
WP_086016640.1\|67049_68149_-\|transposase	IS3-like element ISYpe1 family transposase	S5WIU1	Leptospira_phage	1.4e-45	38.5
WP_002229829.1\|68248_68578_-	hypothetical protein	NA	NA	NA	NA
WP_002224338.1\|68716_69181_-	hypothetical protein	NA	NA	NA	NA
WP_002213258.1\|69199_69751_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	5.9e-77	80.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

2. NZ_CP009714

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009713

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection