CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009787	Yersinia rohdei strain YRA chromosome, complete genome	1 crisprs	DinG,csa3,DEDDh,cas3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	0	10	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009787_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009787_1

3466753-3468041

TypeI-F

I-F

Consensus_repeat	Method
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	PILER-CR
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	CRT

21 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP009787_1

>merge|NZ_CP009787|1|3466753-3468041|PILER-CR,CRISPRCasFinder,CRT
GTTCGCTGCCGTGCAGGCAGCTTAGAAAACCAAAGAGAGAGAAACATTGTGGATAACAAAGTTCGCTGCCGTGCAGGCAGCTTAGAAATAGGTAATAAGGCAGTAATGTTTCATCTTCATGTTCGCTGCCGTGCAGGCAGCTTAGAAAAGTATCATTCTTTGGCGTCAAATCGGGATACGGGTTCGCTGCCGTGCAGGCAGCTTAGAAAATGACGAGTAAATCAGCGAGTGCCGCTGCCAGGTTCGCTGCCGTGCAGGCAGCTTAGAAATTCTAGGCACATTAAGACGCGCATTTTGCCGAGTTCGCTGCCGTGCAGGCAGCTTAGAAACACGTCGTCACGTGGAGCGGATTGCCCTAATTGTTCGCTGCCGTGCAGGCAGCTTAGAAACATTCGCAGAAGTTAAGGCGGCGCACGATACTGTTCGCTGCCGTGCAGGCAGCTTAGAAATTTTAGGTAAAGTGGGTGCGGCGCAGGGCGCAGTTCGCTGCCGTGCAGGCAGCTTAGAAAAGTCACACCGTCCGCGAGCTAAAGCTGCTACAGTTCGCTGCCGTGCAGGCAGCTTAGAAAAAGCACCATATGAAACAAGCCCAGCACCTATCGTTCGCTGCCGTGCAGGCAGCTTAGAAAGATAGCTGTTGCGGTGTCTCTTTCCTGAAAAGGTTCGCTGCCGTGCAGGCAGCTTAGAAATTCTTGCTGCCATTTCTAATCCTTGATATTAAGTTCGCTGCCGTGCAGGCAGCTTAGAAAACAGGCGCTGGCGGGATGGACACTGGCACGGTGTTCGCTGCCGTGCAGGCAGCTTAGAAAGCAAAACGGGATGGCTTCCGTCGCTGTGGCATGTTCGCTGCCGTGCAGGCAGCTTAGAAAAGCGGTGTAAGTAGCGTAGAAGCCACCTACGCGTTCGCTGCCGTGCAGGCAGCTTAGAAATACTACCTCCATGGGGACATATGTGGGTATAGGTTCGCTGCCGTGCAGGCAGCTTAGAAAATAAAAAAAACTATTTCACCTTCAGTGTCTCGGTTCGCTGCCGTGCAGGCAGCTTAGAAATACTTCCCCGATCTGCGCCAACGGCTGTTTATGTTCGCTGCCGTGCAGGCAGCTTAGAAATGGTCTTGTTGCATAGCACGACGCGCCAGCCGGTTCGCTGCCGTGCAGGCAGCTTAGAAAGCCAACGCGGTAATTGGTTACATGCGGCGGTAGTTCGCTGCCGTGCAGGCAGCTTAGAAATGGAGAAAGAGCGCAAAGAGCGTGAGAAAGCAGTTCGCTGCTGTGCAGGCAGCTTAGAAA

>NZ_CP009787|1|1|3466753-3468041|PILER-CR
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ACCAAAGAGAGAGAAACATTGTGGATAACAAA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TAGGTAATAAGGCAGTAATGTTTCATCTTCAT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AGTATCATTCTTTGGCGTCAAATCGGGATACGG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ATGACGAGTAAATCAGCGAGTGCCGCTGCCAG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TTCTAGGCACATTAAGACGCGCATTTTGCCGA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	CACGTCGTCACGTGGAGCGGATTGCCCTAATT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	CATTCGCAGAAGTTAAGGCGGCGCACGATACT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TTTTAGGTAAAGTGGGTGCGGCGCAGGGCGCA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AGTCACACCGTCCGCGAGCTAAAGCTGCTACA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AAGCACCATATGAAACAAGCCCAGCACCTATC
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	GATAGCTGTTGCGGTGTCTCTTTCCTGAAAAG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TTCTTGCTGCCATTTCTAATCCTTGATATTAA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ACAGGCGCTGGCGGGATGGACACTGGCACGGT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	GCAAAACGGGATGGCTTCCGTCGCTGTGGCAT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AGCGGTGTAAGTAGCGTAGAAGCCACCTACGC
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TACTACCTCCATGGGGACATATGTGGGTATAG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ATAAAAAAAACTATTTCACCTTCAGTGTCTCG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TACTTCCCCGATCTGCGCCAACGGCTGTTTAT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TGGTCTTGTTGCATAGCACGACGCGCCAGCCG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	GCCAACGCGGTAATTGGTTACATGCGGCGGTA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TGGAGAAAGAGCGCAAAGAGCGTGAGAAAGCA
GTTCGCTGCTGTGCAGGCAGCTTAGAAA

>NZ_CP009787|1|1|3466753-3468041|CRISPRCasFinder
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ACCAAAGAGAGAGAAACATTGTGGATAACAAA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TAGGTAATAAGGCAGTAATGTTTCATCTTCAT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AGTATCATTCTTTGGCGTCAAATCGGGATACGG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ATGACGAGTAAATCAGCGAGTGCCGCTGCCAG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TTCTAGGCACATTAAGACGCGCATTTTGCCGA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	CACGTCGTCACGTGGAGCGGATTGCCCTAATT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	CATTCGCAGAAGTTAAGGCGGCGCACGATACT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TTTTAGGTAAAGTGGGTGCGGCGCAGGGCGCA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AGTCACACCGTCCGCGAGCTAAAGCTGCTACA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AAGCACCATATGAAACAAGCCCAGCACCTATC
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	GATAGCTGTTGCGGTGTCTCTTTCCTGAAAAG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TTCTTGCTGCCATTTCTAATCCTTGATATTAA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ACAGGCGCTGGCGGGATGGACACTGGCACGGT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	GCAAAACGGGATGGCTTCCGTCGCTGTGGCAT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AGCGGTGTAAGTAGCGTAGAAGCCACCTACGC
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TACTACCTCCATGGGGACATATGTGGGTATAG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ATAAAAAAAACTATTTCACCTTCAGTGTCTCG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TACTTCCCCGATCTGCGCCAACGGCTGTTTAT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TGGTCTTGTTGCATAGCACGACGCGCCAGCCG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	GCCAACGCGGTAATTGGTTACATGCGGCGGTA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TGGAGAAAGAGCGCAAAGAGCGTGAGAAAGCA
GTTCGCTGCTGTGCAGGCAGCTTAGAAA

>NZ_CP009787|1|1|3466753-3468041|CRT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ACCAAAGAGAGAGAAACATTGTGGATAACAAA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TAGGTAATAAGGCAGTAATGTTTCATCTTCAT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AGTATCATTCTTTGGCGTCAAATCGGGATACGG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ATGACGAGTAAATCAGCGAGTGCCGCTGCCAG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TTCTAGGCACATTAAGACGCGCATTTTGCCGA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	CACGTCGTCACGTGGAGCGGATTGCCCTAATT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	CATTCGCAGAAGTTAAGGCGGCGCACGATACT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TTTTAGGTAAAGTGGGTGCGGCGCAGGGCGCA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AGTCACACCGTCCGCGAGCTAAAGCTGCTACA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AAGCACCATATGAAACAAGCCCAGCACCTATC
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	GATAGCTGTTGCGGTGTCTCTTTCCTGAAAAG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TTCTTGCTGCCATTTCTAATCCTTGATATTAA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ACAGGCGCTGGCGGGATGGACACTGGCACGGT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	GCAAAACGGGATGGCTTCCGTCGCTGTGGCAT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	AGCGGTGTAAGTAGCGTAGAAGCCACCTACGC
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TACTACCTCCATGGGGACATATGTGGGTATAG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	ATAAAAAAAACTATTTCACCTTCAGTGTCTCG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TACTTCCCCGATCTGCGCCAACGGCTGTTTAT
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TGGTCTTGTTGCATAGCACGACGCGCCAGCCG
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	GCCAACGCGGTAATTGGTTACATGCGGCGGTA
GTTCGCTGCCGTGCAGGCAGCTTAGAAA	TGGAGAAAGAGCGCAAAGAGCGTGAGAAAGCA
GTTCGCTGCTGTGCAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009787.1\|WP_004713769.1\|3476792_3477920_-\|ImpA-family-type-VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|226046
NZ_CP009787.1\|WP_032816284.1\|3473746_3474406_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009787.1\|WP_032816279.1\|3462735_3464067_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP009787.1\|WP_032816285.1\|3477995_3479021_-\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|226051
NZ_CP009787.1\|WP_032816278.1\|3459221_3462515_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP009787.1\|WP_032816280.1\|3464063_3465035_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP009787.1\|WP_004713767.1\|3474402_3475743_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|371506
NZ_CP009787.1\|WP_032816303.1\|3469813_3470416_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP009787.1\|WP_004713764.1\|3471570_3472056_-\|DcrB-related-protein	unknown	unknown	gnl\|CDD\|227722
NZ_CP009787.1\|WP_004713749.1\|3451928_3453440_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP009787.1\|WP_004713768.1\|3475781_3476786_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP009787.1\|WP_032816275.1\|3458238_3459225_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP009787.1\|WP_004713750.1\|3453719_3454814_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP009787.1\|WP_004713763.1\|3470832_3471330_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|365939
NZ_CP009787.1\|WP_004713748.1\|3451318_3451768_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP009787.1\|WP_004713758.1\|3465053_3466061_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP009787.1\|WP_032816282.1\|3466072_3466624_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP009787.1\|WP_032816274.1\|3454813_3455884_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP009787.1\|WP_081452031.1\|3468083_3468989_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP009787.1\|WP_004713765.1\|3472062_3473745_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439

Protein	Function_ID	Function_description	E-value
NZ_CP009787.1\|WP_004713769.1\|3476792_3477920_-\|ImpA-family-type-VI-secretion-system-protein	gnl\|CDD\|226046	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	9.76985e-37
NZ_CP009787.1\|WP_032816279.1\|3462735_3464067_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	1.67286e-136
NZ_CP009787.1\|WP_032816285.1\|3477995_3479021_-\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|226051	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	6.30617e-119
NZ_CP009787.1\|WP_032816278.1\|3459221_3462515_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP009787.1\|WP_032816280.1\|3464063_3465035_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.28848e-143
NZ_CP009787.1\|WP_004713767.1\|3474402_3475743_-\|glycosyl-transferase	gnl\|CDD\|371506	pfam11397, GlcNAc, Glycosyltransferase (GlcNAc). GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1, a ubiquitous eukaryotic protein, in the cytoplasm.	7.25817e-79
NZ_CP009787.1\|WP_032816303.1\|3469813_3470416_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	6.83217e-09
NZ_CP009787.1\|WP_004713764.1\|3471570_3472056_-\|DcrB-related-protein	gnl\|CDD\|227722	COG5435, COG5435, Uncharacterized conserved protein [Function unknown].	2.97186e-41
NZ_CP009787.1\|WP_004713749.1\|3451928_3453440_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP009787.1\|WP_004713768.1\|3475781_3476786_-\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	3.18153e-08
NZ_CP009787.1\|WP_032816275.1\|3458238_3459225_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP009787.1\|WP_004713750.1\|3453719_3454814_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP009787.1\|WP_004713763.1\|3470832_3471330_+\|response-regulator-transcription-factor	gnl\|CDD\|365939	pfam00196, GerE, Bacterial regulatory proteins, luxR family.	3.61327e-05
NZ_CP009787.1\|WP_004713748.1\|3451318_3451768_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	2.40189e-64
NZ_CP009787.1\|WP_004713758.1\|3465053_3466061_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP009787.1\|WP_032816282.1\|3466072_3466624_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	4.48493e-84
NZ_CP009787.1\|WP_032816274.1\|3454813_3455884_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP009787.1\|WP_081452031.1\|3468083_3468989_-\|IS481-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	6.7107e-21
NZ_CP009787.1\|WP_004713765.1\|3472062_3473745_-\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	8.37628e-35

>NZ_CP009787.1|WP_032816282.1|3466072_3466624_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIKVQPDLETSAQDLLNNLFAKLHRALGHYAAGRIGVSFPCSDKTLDCVLRLHGSAQDIDNLMQQNWLQGMRDYVRCSAVLPVPEAVQYRTVRRVQAKSAHNKRQRSIAKGWLTEQQAFEQIPDTQQKSLRLPFIQLRSLSNGNTMRIYIQHGELQEQAQLGSFSAYGLSSSTTIPWF
>NZ_CP009787.1|WP_004713758.1|3465053_3466061_+|type-I-F-CRISPR-associated-protein-Csy3
MATITLKTASVLAFESKLACSDAIMAAGNWEERTDVTCWQPILVQEKAVRGTISNRLKAAISSDSTKLDAEIQKANLQTVDVAALPFDCDTLKVSFTLRVLGDLATPSTCNDPDYQAALAAVIQGYVARQGFSELARRYATNIASGRFLWRNRVGAEQVEVRVSCGGRPWVFDGYAHGLHEFPPVTGDLLELSKAIEAGLQGQQYTFIEVQAFVRLGQGQAVYPSQELVMGGGKGDKSKFLFQLNQVAAMHSQKIGNALRTIDTWHPESAEVGAIAVEPYGSVTNRGKAYRQPREKLDFYNLLDAWVLKGKEPDLAQQNYVIAMLIRGGVFGDAS
>NZ_CP009787.1|WP_032816280.1|3464063_3465035_+|type-I-F-CRISPR-associated-protein-Csy2
MSTLITLRHLQVSNVNTIAGLTYGFPAITQLLGYTHALSRKLQQSHGIELQGCAVVCHHHQIQAYQPSGWGDYVFALTRNPLTKEGNTAPIVEEGRMQMEISLVLECQGLISGGEAGIAALREYLFPLCQSQRLAGGTISRLQDIDIVAFPTTAQERSRFTRRLLPGFVLLDRSSLLQQHLLRLQQDQPEADLLDAWLDFSALKYQAIPLQDENGVQDDNNKAQWAYQPKPESGWLVPIMTGFRAISPCYEPGIVNNSRDWATPFRFAEAVYGIGEWKSPHNIDDLRQMFWQYSHDQDWYLCQAQPNTVTGSAFQLEEDFDFF
>NZ_CP009787.1|WP_032816279.1|3462735_3464067_+|type-I-F-CRISPR-associated-protein-Csy1
MEYTGLSAAIAGYIDERRRVKKEPVEKSCEKALKEEPEAARRVAISTEYQAQLQALDNQFAYIPWLTDAAKRAKQISLVTHAPKFTHGDAKGSGVLDDRESTVAKGYLSTLVLSQPEIDTIGNAAAANSATLLLLTVDGISVADCIAQDDISPFTPFTDDPQLLGEWLAGFKLALVDKDPSSHPLAKQIFFPVAEQKYHLLSPLFPSSLAHEIYARIGQSRFGEQAKEIREAKKAGKYHAELQVSYPGTAIQIYGGSKPLNISSLNVARGGKMLLLSCAPPSWRGRLAPPSGKDILYSSEFNRRTWQQVNQLKSYLLSVAEKESTLEIRQQRGRYVVALVDALLNYATEIQSLTELAGWSSHPDCKLPDAQKIWLDPHHPSTEFQQQRSKNAWPGEIAKQFAHWLNKKLEHKRMTFALAESQAWQKVFSQRLWAFDLGRREEV
>NZ_CP009787.1|WP_032816278.1|3459221_3462515_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVAQCSKKALIETRRILDQFAERKGDRTWQTPITQEGLNTLRKLLRKTAKRNTAVACHWVRGANNTELLWIVGNLRRFNAQGTVPTNSTQRDILRSRDENQWHNAEVIALLAGIAGLFHDFGKANRLFQNKLLKIGASFEPCRHEWVSLRLFTAFVAERKDAQWLQALAEVSTEDEPALLAHLIVDDLRTQQNPFTTLPPLAKVVAWLIVSHHRLPVYPASSRWPEYKNPPDLKYHDHWLSECFSPGWNSPQFKNDYAGSVREHNWQFPQGTPFKSATWCRKAQEIARRALQSNVLYSGEGWFEQRFTLHLSRLVLMLADHFYSAQPVTEKWQDRNYTAFANTDRTTHECKQRLDEHNIGVAHNAFLLARSLPVLRDSLPAITRHKDFKKRATESRFRWQDKAYDLACALREQTRQQGFFGVNMASTGCGKTFANARIMYGLADETLGCRFSVALGLRTLTLQTGEALRDRLHLQDDDLAVMIGSAAVKELNEQEQQREQQASGSESADDLFAEHMYVKYDGSLEDGRLSRWLTASPKLQQLLSAPILVSTIDHLIPATEGIRGGKQIAPMLRLLTSDLVLDEPDDFDQADLHALCRLVNWAGMLGSRVLLSSATLPPALIVALFEAYQQGWMDYTRVNGEPNPHGEICCAWVDEYDIGNGSIADRESFKQKHQAFVLQRAQNLLSRQQVLRKVRLAAVSGNHGGKLEAVRSIASVIQQQMSILHQAHHQCHTSGKKRVSIGLVRIANINPLVALASALMATAPETNYRIHYCVYHSQHPLAQRSHIETRLDAALTRYDPDALWHQPEIQAAIQKAPEENQLFVVLATSVAEVGRDHDYDWAIVEPSSMRSLVQLAGRVQRHRQCPPETENIVILTHNINALSGQEIAYRHPGFESQERRFSSHDLSVLLRGIKYQEINALPRILSPEPLKLKTQYDNFAELEHAQLLCALFQHKSGEKPLLSASRWWLNQPTWHAEFQRCTPFRQSAADEQYFLYLEEIGEIADFRLYDMNARPPCYVPVSVIEPVALTLAVGNQPWFNLDADYVYPLLAERFDLELNEISARYGEIRLRKTDHSSVAWRYHPVLGVFRALE
>NZ_CP009787.1|WP_032816275.1|3458238_3459225_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MNNQFSPSDMKTILHSKRANLYYLQHCRILVNGGRVEYVTDEGKQSLYWNIPIANTTAVMLGTGTSVTQAAMREFAKAGVLVGFCGGGGTPLFTANEVEVDVSWLTPQSEYRPTEYLQHWVSFWFNDDKRLAAAIAFQQQRIAQIRTHWLSARMQREQTFDVDAAQLNSVLDNFIQRLSACQNSNDVLAQEAVMTKALYKLAANGVKYGEFLRAKRGSGSGIDIANRFLDHGNYLAYGLVATAAWVIGLPHGLSILHGKTRRGGLVFDIADLIKDALILPQAFIAAMAGEDEQQFRQRCLTGFQQADALDVMIDTLKDTAESLSQVGK
>NZ_CP009787.1|WP_032816274.1|3454813_3455884_+|LPS-export-ABC-transporter-permease-LptG
MFGVLDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQGDYSVAAAGMFTLLSIPKDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAASVMKTAIPLVLLTMAIGEWVAPQGEQMARNFRAQQMYGGSLLSTQSGLWAKDGSDFIYIQRVSGDNELTGVNIYHFDPQDRLLSVRYAETATFDDNLWRLSQVDESDLSNPNKVTGRQTLTGEWKTNLTPEKLGVVAMNPDSLSISGLYSYSKYLQQSGQESNIYELNMWSKILAPFSVAVMMLMALSFIFGPLRSVPMGLRVVIGISFGFLFYVLDQVFGKLSQVYSIPPLLGALLPSILFLLISVYLLLKRR
>NZ_CP009787.1|WP_004713750.1|3453719_3454814_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIIAALILAVATSALAAVNTIWLGPWSSKHQDEVLNDARANPSLAALAGGQFKSSNDGSSALFIGNVSGKEFNRVFLAQLRPNGNQRPSVIVADSGHMTERPDGSQVVTLNKGTRYEGTALLRDFRITDFVDYQAIIGHKEVQQNNTVAEQMNMKQLWRSNEPDARAEFHWRLTLIVSVVIMALLVVPLSVINPRQGRVLSMLPAMLLYLIFFLLQSSLRSNASSGKLDPLVWMWTVNGVYLALAVILNLWDGLPARKLRARLRGAA
>NZ_CP009787.1|WP_004713749.1|3451928_3453440_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKVGQTLLLHHVPNILSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNTYWKVRQAVETAKETLYTFDQLKSNKTEPRRPLRKMVFNVPTRRELTSGERAIQHGLAVASGIKAAKDLGNMPPNICNAAYLASQARQLADAFSTNIITRVIGEQQMKELGMHSYLAVGHGSQNESLMSVIEYKGNPNPDAKPIVLVGKGLTFDSGGISIKPAEGMDEMKYDMCGAATVYGVMRVVAELQLPLNVIGVLAGCENMPGGRAYRPGDILTTMSGQTVEVLNTDAEGRLVLCDALTYVERFDPELVIDIATLTGACVVALGHHITGLMSNHNPLAHELIGASEQAGDRAWRLPLGDEFYEQLDSNFADMANIGGRAGGAITAGCFLSRFTRKYSWAHLDIAGTAWRSGKNKGATGRPVALLSQFLLNRAGQNGDD
>NZ_CP009787.1|WP_004713748.1|3451318_3451768_-|DNA-polymerase-III-subunit-chi
MKNATFYLLEHDTPAGELRAHEALACEVAAERWRAGKRVLIACESQEQAQRLDEALWQRAPERFVPHNLAGEGPKYGAPVELAWPERRGNSPRDLLISLLPEFAAFATAFHEVVDFVPYEENLKQLARDRYKSYRSVGFHLTTATPPTN
>NZ_CP009787.1|WP_081452031.1|3468083_3468989_-|IS481-family-transposase
MNAKAKRDITHKTKVLNYANNTKNIAKTCRHFSISRRTYYTWKKAYERYGEQGLINHKPCPENPTRRVAKHIEEQIIYLRTTYHFGPQRISWYLLRFHNIKVSRSGCYYVLLRNRLNQLPQNQRQRSKPLFKRYEKQVPGHHVQVDVKFLFFNSPNGQRIKRFQYTAIDDATRIRALKIYERHNQANAINFIDYVVNKFPFRLKTIRTDNGHEFQAKFNWHVHELGMEHVYIKPATPRLNGKVERSHLTDKQEFYQLIDYTDDVDLHEKLAEWEAFYNCHRPHSAHGGKTPYEVLKTKLGI
>NZ_CP009787.1|WP_032816303.1|3469813_3470416_+|LuxR-family-transcriptional-regulator
MLSIAIITNNTFYKLGLIYLLKNILNKKIDKDYLLNNAYEQKERKKHNVIFEDFMVIVNIYKDGFFSDESVNEFDKPMLTVNIPFNSDRLDINEIVSKINKIIKLARLNGCDMTSKEIIDFLELEDNLQLSVTESSLVKLTSQGYSINDISVMLNRSEKTILNYRRSVIKKLGILNKLEFYNYSSNMKNYGSKDAILINI
>NZ_CP009787.1|WP_004713763.1|3470832_3471330_+|response-regulator-transcription-factor
MKSYDTIDPFINAINQNTKLVLIDITSVDYIDAYSMLKEIKEKSKVIVLCDSETELHILPKIYNAVLYKTSSILNIIITIERVCDNKCNDMIVDLDSDDFEMPELTKIEKSILELIISGVDNDQIAKLLLITREKVMGYRCNICKKYNINSLSVQYHKDNPPYDG
>NZ_CP009787.1|WP_004713764.1|3471570_3472056_-|DcrB-related-protein
MNATSSNYTIYEGTFLTTAPTLDQTVNILMFRDPEKNEYNIIINRALLTEEETPETFCEKEMEALRNKLPGFQIEGKMLTHELGPAKLPVVQVANNYLQNGERTRQVQSIVLLPHHAISNPDNRVVLIFTLTRTGGEFTEYQRKHYVKIINSFNPKVMSSN
>NZ_CP009787.1|WP_004713765.1|3472062_3473745_-|OmpA-family-protein
MFTVKLNKSLLLLWLAACGFLIASITIKENTFWNNVIFLIFIFLLAAAVWRHYTLKSVQSKPEQSNLEKQPLQVVAPQPAAQENTVILILGPYAAKWFSNPGATDNTRFSDHATWILISDPEALQKRLKFIADHHSSAQILVFFPFLPDVYDNASIIISQLTKWQRSFATLPLQTPLNSVFAIYLQLSGERLSHNPDNAYWTGNINLANQEEVDITSSFQALSHKFALQDNNSTEFAFQRNVMAHQLFAWLNESGITHTLQTLFSHTSLQLTDVILSDNGKGFIKHGAWSVWLERTLGILPGLASAVSLPPFPKVINWQTKPAMPTIEPEKIAPPTQVKWVWSLGFAAMLLAVHMAHTVSQQKVFYQQYSQQLAPLDNINELSIQQLAENLAALTNKGKALSTCISSFDITHWGLSQCAPLLKRVNHKIETYTNVPKFSSARMAPLFDSNSSKLKPNKQTNDILKSLLYLLEKNPDTKVLIIGHSDNTGSPSFNMKLSEQRAQVVGDWLIKNSSIPVNNLIVRGKGALEPIASNNTKIGQDQNRRVEVLLLPTQDKNVGV
>NZ_CP009787.1|WP_032816284.1|3473746_3474406_-|hypothetical-protein
MKSEDIFKQILSADTLLSFSGIIPSLSDFQRKIIALILEFSDTLKSEQHPPIEVDRLCHQLCHYLDKRIDSCIKDKGLNWDSYLLLDYFYGYSMPLPVDHTSLEALLNSDDETIYYYTFKILLLSRDLSIRDVKSQQLLARYSHKLLSLNLVSTDDKTDIEPEVEVEADAACNIKEPDQTSLDSVQRRHWYSLCIPLFTLVLFLSALWFWCSHYLGDIS
>NZ_CP009787.1|WP_004713767.1|3474402_3475743_-|glycosyl-transferase
MKFASSIFVSIASYRDSELIPTLHDMINTSKHPEHLDIAVFWQDDNDINTFLNQGMQLNESKTYLGYPLYLLEYNGARIWVLSVHYYESKGACWARHMAEQLFQNQAYFLQIDSHCRFIPHWDQEMIAMLNSLRVKSPKPVLSSYPPGYEPDQKNENRKDYVSRLTFNAFTPEGMVQMMSTPITETEPVRCGYLAAGFIFSDGSFVHDVANDPDIFFLGEEIAMAARAFTHGYDTYAPHKILLWHFYTRSNHSKVWTDHNNEAKESGAIDLAWWERDKIAKSRVRALLGTEQTTIELGRYILGTERSLQEFEYRVGLNFKKLTTHPDAAGTNKIAYFNELPASHSQWLQSLIVVNKKTLKIEKNEVDFTREDVEWWHIGVYNPQNTQVSAEKVDLNNMNKIITKIDESIVELKLAFNTDKNVNPHTVRICPYIHMQGWGDVVEKSW
>NZ_CP009787.1|WP_004713768.1|3475781_3476786_-|fimbrial-protein
MNKKLLILAFGAAITGQAQAICTIDTTSEDRGILPSTMTVPAFVITIDADAPADTTKFIAEADTATQGDRVTYVDCAIGNPYGKNVSTLLGASLGNGLFATNIEGIAIKPLWNNGGAFGTFNTSAEMTFSTEIGRWTYPAISYFRIELYKTKETLSLNNPAGQVVLPGGTAAYNWVNTNSLANFAQKLDIGQITIISTPSCTFDGSKVIDFGLVTSGNLSNGIERNLDFDITCKTDYGQYSATAAITTQTPTADGNYIKVKDNNGQDDLLRIKISDSSGKLLTLDGNSTEQKINILSATPAEFKWKATLEPAVVNAKPANGRFSAAAEIILQIN
>NZ_CP009787.1|WP_004713769.1|3476792_3477920_-|ImpA-family-type-VI-secretion-system-protein
MSVQNIAENTGYYRNLMQPIPGDNPCGLDLEYDSAFLMLQTKLQPKLTAEYGDFVEVAESINWTDTERKCLELLAKARDVRLFIILIRCRMRQIGVSAVQEGLEALIYCLNLWPEDLHPQLLDEGEFEPFMRANAFADLDDIDGFIADLRNQLLPKAAGMQISVKEFEKAHSFPREEGALDEGTMEAIQHEWLTRSDSAIASLQKAYALLLELAARLRGSLGDLTPDFVRLASLLRHFGSDDMAPLTAFEMPEYLAVPEENPPYEITAEPSGVETAPPIVAEIGSEAPSFQPQSPAILQPAPMPIQVPPQPKGIQSRADALSRIIEVRQWFAASEPSSPVIALLSFSEKTIGKSFGELLQIIPQELISKLDAGQE
>NZ_CP009787.1|WP_032816285.1|3477995_3479021_-|type-VI-secretion-system-baseplate-subunit-TssG
MNADEKLNQASQVNLDSWYQEAEPWNAGFISMMRVNAARTPDMPAPGKAMLPEQETFRIGQSANMAFAPREIAHVEMKDGKMDLQLFSLGVWGPHGAMPLQMTELAYTRAEMHDHTMTDFVDLFHHRALSQLYRAWFVSQDTSSLDRQDDEKFSFYVGCLAGLDLKELMHSPLPVHAQLASSAHLIREARNPEGLVGALQYYFEVPVRMVEFAQQWIFLDKDDQTQLGDGASAMLLGDGAILGNTVLDRQHKFELILGPLSLQQYLRFSPSGQDLPILREWVRHFVGFEYAWEVQLLLAANEVPVASLAGESQLGYTSWLARNDTSADVKGMSFEPEMHRY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009787_1	1.9\|3467262\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467262-3467293	32	NZ_CP028489	Yersinia massiliensis strain GTA plasmid unnamed2, complete sequence	55501-55532	1	0.969
NZ_CP009787_1	1.9\|3467262\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467262-3467293	32	NC_009704	Yersinia pseudotuberculosis IP 31758 plasmid p_59kb, complete sequence	44381-44412	1	0.969
NZ_CP009787_1	1.18\|3467802\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467802-3467833	32	NZ_CP009363	Yersinia frederiksenii Y225 plasmid unnsmrf, complete sequence	27747-27778	2	0.938
NZ_CP009787_1	1.10\|3467322\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467322-3467353	32	AJ564013	Bacteriophage PY54 complete genome	2339-2370	3	0.906
NZ_CP009787_1	1.10\|3467322\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467322-3467353	32	NC_005069	Yersinia phage PY54, complete genome	2339-2370	3	0.906
NZ_CP009787_1	1.21\|3467982\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467982-3468013	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	142347-142378	6	0.812
NZ_CP009787_1	1.21\|3467982\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467982-3468013	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	326637-326668	6	0.812
NZ_CP009787_1	1.21\|3467982\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467982-3468013	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	1434171-1434202	6	0.812
NZ_CP009787_1	1.21\|3467982\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467982-3468013	32	NZ_CP015111	Acinetobacter sp. TGL-Y2 plasmid unnamed1, complete sequence	233060-233091	7	0.781
NZ_CP009787_1	1.1\|3466781\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3466781-3466812	32	NZ_CP018742	Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence	154326-154357	8	0.75
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX017520	Salmonella phage 64795_sal3, complete genome	39012-39043	8	0.75
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	MH791402	UNVERIFIED: Salmonella phage Segz_1, complete genome	34948-34979	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417923	Uncultured Caudovirales phage clone 7S_12, partial genome	14864-14895	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417935	Uncultured Caudovirales phage clone 8F_1, partial genome	14739-14770	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417934	Uncultured Caudovirales phage clone 8AX_6, partial genome	11310-11341	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417866	Uncultured Caudovirales phage clone 3F_3, partial genome	225-256	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417919	Uncultured Caudovirales phage clone 3S_10, partial genome	14990-15021	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417936	Uncultured Caudovirales phage clone 8S_5, partial genome	13771-13802	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417922	Uncultured Caudovirales phage clone 7AX_5, partial genome	15013-15044	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417924	Uncultured Caudovirales phage clone 9F_3, partial genome	14841-14872	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417870	Uncultured Caudovirales phage clone 3F_4, partial genome	225-256	8	0.75
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	MF417917	Uncultured Caudovirales phage clone 7F_10, partial genome	15417-15448	8	0.75
NZ_CP009787_1	1.17\|3467742\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467742-3467773	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	314265-314296	8	0.75
NZ_CP009787_1	1.21\|3467982\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467982-3468013	32	KX257490	Pseudoalteromonas phage vB_PspS-H6/1, complete genome	24739-24770	8	0.75
NZ_CP009787_1	1.1\|3466781\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3466781-3466812	32	MH616802	Microviridae sp. isolate ctce543, complete genome	4129-4160	9	0.719
NZ_CP009787_1	1.7\|3467142\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467142-3467173	32	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	601254-601285	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	MN694082	Marine virus AFVG_250M1102, complete genome	27100-27131	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	6101-6132	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349270	Synechococcus phage S-RIM2 isolate RW_40_1112, complete genome	146607-146638	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349255	Synechococcus phage S-RIM2 isolate RW_01_0709, complete genome	146552-146583	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349243	Synechococcus phage S-RIM2 isolate Np_11_1112, complete genome	146610-146641	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349269	Synechococcus phage S-RIM2 isolate RW_34_0905, complete genome	146605-146636	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349271	Synechococcus phage S-RIM2 isolate Sn_25_0709, complete genome	146610-146641	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349249	Synechococcus phage S-RIM2 isolate Np_20_0912, complete genome	146605-146636	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349327	Cyanophage S-RIM12 isolate WH_07_0310, complete genome	144055-144086	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349227	Synechococcus phage S-RIM2 isolate Fa_10_0709, complete genome	146603-146634	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349256	Synechococcus phage S-RIM2 isolate RW_02_0113, complete genome	146608-146639	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349233	Synechococcus phage S-RIM2 isolate LIS_11_1010, complete genome	146618-146649	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349260	Synechococcus phage S-RIM2 isolate RW_11_0905, complete genome	146606-146637	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349259	Synechococcus phage S-RIM2 isolate RW_08_1112, complete genome	145444-145475	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349266	Synechococcus phage S-RIM2 isolate RW_26_0905, complete genome	145442-145473	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349250	Synechococcus phage S-RIM2 isolate Np_23_1112, complete genome	146608-146639	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349265	Synechococcus phage S-RIM2 isolate RW_17_0113, complete genome	146595-146626	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349240	Synechococcus phage S-RIM2 isolate Np_03_1112, complete genome	145435-145466	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349258	Synechococcus phage S-RIM2 isolate RW_03_0709, complete genome	146602-146633	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	HQ317291	Synechococcus phage S-RIM2 R9_2006, complete genome	146590-146621	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349236	Synechococcus phage S-RIM2 isolate NJ_05_1013, complete genome	145452-145483	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349282	Synechococcus phage S-RIM2 isolate W2_14_0910, complete genome	146619-146650	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349252	Synechococcus phage S-RIM2 isolate Np_31_1112, complete genome	146595-146626	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349267	Synechococcus phage S-RIM2 isolate RW_29_1112, complete genome	146605-146636	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349253	Synechococcus phage S-RIM2 isolate Np_33_0912, complete genome	146608-146639	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349244	Synechococcus phage S-RIM2 isolate Np_12_0912, complete genome	146611-146642	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349226	Synechococcus phage S-RIM2 isolate Fa_02_0709, complete genome	146581-146612	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349232	Synechococcus phage S-RIM2 isolate LIS_09_1010, complete genome	146602-146633	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349263	Synechococcus phage S-RIM2 isolate RW_14_1112, complete genome	146614-146645	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	NC_020859	Synechococcus phage S-RIM2 R1_1999, complete genome	146602-146633	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349257	Synechococcus phage S-RIM2 isolate RW_02_0709, complete genome	146602-146633	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	HQ317290	Synechococcus phage S-RIM2 R21_2007, complete genome	146605-146636	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349279	Synechococcus phage S-RIM2 isolate W1_16_0709, complete genome	146607-146638	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349262	Synechococcus phage S-RIM2 isolate RW_12_0709, complete genome	146382-146413	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349238	Synechococcus phage S-RIM2 isolate Np_01_1112, complete genome	146603-146634	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349254	Synechococcus phage S-RIM2 isolate Np_36_1112, complete genome	146614-146645	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349242	Synechococcus phage S-RIM2 isolate Np_06_0912, complete genome	146611-146642	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349251	Synechococcus phage S-RIM2 isolate Np_24_1112, complete genome	146604-146635	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349281	Synechococcus phage S-RIM2 isolate W2_13_0910, complete genome	146601-146632	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349247	Synechococcus phage S-RIM2 isolate Np_15_1112, complete genome	146608-146639	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349228	Synechococcus phage S-RIM2 isolate Fa_24_0709, complete genome	146601-146632	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349268	Synechococcus phage S-RIM2 isolate RW_30_0905, complete genome	146607-146638	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349241	Synechococcus phage S-RIM2 isolate Np_04_1112, complete genome	146608-146639	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349239	Synechococcus phage S-RIM2 isolate Np_03_0709, complete genome	146605-146636	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349276	Synechococcus phage S-RIM2 isolate W1_09_0709, complete genome	146603-146634	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349264	Synechococcus phage S-RIM2 isolate RW_16_0905, complete genome	146604-146635	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349245	Synechococcus phage S-RIM2 isolate Np_14_0912, complete genome	146593-146624	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349248	Synechococcus phage S-RIM2 isolate Np_19_1112, complete genome	145439-145470	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349272	Synechococcus phage S-RIM2 isolate W1_01_0709, complete genome	146605-146636	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349235	Synechococcus phage S-RIM2 isolate LIS_14_1013, complete genome	146604-146635	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349230	Synechococcus phage S-RIM2 isolate LIS_02_1013, complete genome	146948-146979	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349246	Synechococcus phage S-RIM2 isolate Np_15_0709, complete genome	146626-146657	9	0.719
NZ_CP009787_1	1.12\|3467442\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467442-3467473	32	KX349237	Synechococcus phage S-RIM2 isolate Np_01_0709, complete genome	146604-146635	9	0.719
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	NZ_CP013109	Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence	488751-488782	9	0.719
NZ_CP009787_1	1.14\|3467562\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467562-3467593	32	NZ_CP024309	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence	55936-55967	9	0.719
NZ_CP009787_1	1.18\|3467802\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467802-3467833	32	NZ_CP010680	Phaeobacter gallaeciensis strain P75 plasmid pP75_g, complete sequence	2552-2583	9	0.719
NZ_CP009787_1	1.18\|3467802\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467802-3467833	32	NZ_CP045409	Roseovarius sp. THAF9 plasmid pTHAF9_e, complete sequence	271-302	9	0.719
NZ_CP009787_1	1.21\|3467982\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467982-3468013	32	AM749121	Streptococcus phage M102 complete genome	8662-8693	9	0.719
NZ_CP009787_1	1.21\|3467982\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467982-3468013	32	MG250483	Aeromonas phage Ah1, complete genome	26385-26416	9	0.719
NZ_CP009787_1	1.21\|3467982\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467982-3468013	32	NC_012884	Streptococcus phage M102, complete genome	8662-8693	9	0.719
NZ_CP009787_1	1.21\|3467982\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467982-3468013	32	DQ386162	Streptococcus phage M102AD, complete genome	8784-8815	9	0.719
NZ_CP009787_1	1.2\|3466841\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3466841-3466872	32	NZ_CP038259	Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence	38376-38407	10	0.688
NZ_CP009787_1	1.17\|3467742\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467742-3467773	32	MN693888	Marine virus AFVG_250M648, complete genome	30791-30822	10	0.688
NZ_CP009787_1	1.17\|3467742\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467742-3467773	32	MN693985	Marine virus AFVG_250M674, complete genome	10538-10569	10	0.688
NZ_CP009787_1	1.17\|3467742\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467742-3467773	32	MN693692	Marine virus AFVG_250M675, complete genome	30756-30787	10	0.688
NZ_CP009787_1	1.18\|3467802\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467802-3467833	32	NZ_CP010627	Phaeobacter inhibens strain P51 plasmid pP51_d, complete sequence	32846-32877	10	0.688
NZ_CP009787_1	1.18\|3467802\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467802-3467833	32	NZ_CP045396	Roseovarius sp. THAF27 plasmid pTHAF27_c, complete sequence	12438-12469	10	0.688
NZ_CP009787_1	1.18\|3467802\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467802-3467833	32	NZ_CP010607	Phaeobacter inhibens strain P83 plasmid pP83_h, complete sequence	19847-19878	10	0.688
NZ_CP009787_1	1.18\|3467802\|32\|NZ_CP009787\|PILER-CR,CRISPRCasFinder,CRT	3467802-3467833	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	302160-302191	11	0.656

1. spacer 1.9|3467262|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028489 (Yersinia massiliensis strain GTA plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

agtcacaccgtccgcgagctaaagctgctaca	CRISPR spacer
agtcacaccgtccgcgagctaaggctgctaca	Protospacer
**********************.*********

2. spacer 1.9|3467262|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NC_009704 (Yersinia pseudotuberculosis IP 31758 plasmid p_59kb, complete sequence) position: , mismatch: 1, identity: 0.969

agtcacaccgtccgcgagctaaagctgctaca	CRISPR spacer
agtcacaccgtccgcgagctaaggctgctaca	Protospacer
**********************.*********

3. spacer 1.18|3467802|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009363 (Yersinia frederiksenii Y225 plasmid unnsmrf, complete sequence) position: , mismatch: 2, identity: 0.938

tacttccccgatctgcgccaacggctgtttat	CRISPR spacer
tatttccccgatctgcgtcaacggctgtttat	Protospacer
**.**************.**************

4. spacer 1.10|3467322|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to AJ564013 (Bacteriophage PY54 complete genome) position: , mismatch: 3, identity: 0.906

aagcaccatatgaaacaagcccagcacctatc	CRISPR spacer
aggcgccatatgaaacaaggccagcacctatc	Protospacer
*.**.************** ************

5. spacer 1.10|3467322|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NC_005069 (Yersinia phage PY54, complete genome) position: , mismatch: 3, identity: 0.906

aagcaccatatgaaacaagcccagcacctatc	CRISPR spacer
aggcgccatatgaaacaaggccagcacctatc	Protospacer
*.**.************** ************

6. spacer 1.21|3467982|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 6, identity: 0.812

tggagaaagagcgcaaagagcgtgagaaagca	CRISPR spacer
tggagcaagagcgtaaagagcgtgaaatcgct	Protospacer
***** *******.***********.*  **

7. spacer 1.21|3467982|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 6, identity: 0.812

tggagaaagagcgcaaagagcgtgagaaagca	CRISPR spacer
tggagcaagagcgtaaagagcgtgaaatcgct	Protospacer
***** *******.***********.*  **

8. spacer 1.21|3467982|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 6, identity: 0.812

tggagaaagagcgcaaagagcgtgagaaagca	CRISPR spacer
tggagcaagagcgtaaagagcgtgaaatcgct	Protospacer
***** *******.***********.*  **

9. spacer 1.21|3467982|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015111 (Acinetobacter sp. TGL-Y2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tggagaaagagcgcaaagagcgtgagaaagca	CRISPR spacer
tagaagatcagcgcaaagagcgtgataaggca	Protospacer
*.**..*  **************** **.***

10. spacer 1.1|3466781|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018742 (Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence) position: , mismatch: 8, identity: 0.75

accaaagagagagaaacattgtggataacaaa	CRISPR spacer
atctaaaagagaaaaacattgtggatagttat	Protospacer
*.* **.*****.**************.. *

11. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX017520 (Salmonella phage 64795_sal3, complete genome) position: , mismatch: 8, identity: 0.75

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
tagtgatagccatttcttatcctcgatattaa	Protospacer
*  * .. ********* *****.********

12. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MH791402 (UNVERIFIED: Salmonella phage Segz_1, complete genome) position: , mismatch: 8, identity: 0.75

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
tagtgatagccatttcttatcctcgatattaa	Protospacer
*  * .. ********* *****.********

13. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417923 (Uncultured Caudovirales phage clone 7S_12, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

14. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417935 (Uncultured Caudovirales phage clone 8F_1, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

15. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417934 (Uncultured Caudovirales phage clone 8AX_6, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

16. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417866 (Uncultured Caudovirales phage clone 3F_3, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

17. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417919 (Uncultured Caudovirales phage clone 3S_10, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

18. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417936 (Uncultured Caudovirales phage clone 8S_5, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

19. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417922 (Uncultured Caudovirales phage clone 7AX_5, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

20. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417924 (Uncultured Caudovirales phage clone 9F_3, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

21. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417870 (Uncultured Caudovirales phage clone 3F_4, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

22. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MF417917 (Uncultured Caudovirales phage clone 7F_10, partial genome) position: , mismatch: 8, identity: 0.75

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
tccaagaccgatggctttcgtcgcggtggcat	Protospacer
 * **.   ********.****** *******

23. spacer 1.17|3467742|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 8, identity: 0.75

ataaaaaaaactatttcaccttcagtgtctcg	CRISPR spacer
ataaaaaaaattattttaccttcagacacaga	Protospacer
**********.*****.********   *  .

24. spacer 1.21|3467982|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX257490 (Pseudoalteromonas phage vB_PspS-H6/1, complete genome) position: , mismatch: 8, identity: 0.75

tggagaaagagcgcaaagagcgtgagaaagca	CRISPR spacer
aagaagtcgaacgcaaagagcgtgagcaagca	Protospacer
 .**..  **.*************** *****

25. spacer 1.1|3466781|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MH616802 (Microviridae sp. isolate ctce543, complete genome) position: , mismatch: 9, identity: 0.719

accaaagagagagaaacattgtggataacaaa	CRISPR spacer
gaagaagaaagagaaaaattgtggatagagaa	Protospacer
.  .****.******* **********. .**

26. spacer 1.7|3467142|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cattcgcagaagttaaggcggcgcacgatact	CRISPR spacer
gattcgcagaaggtcaggcggcgcgacaaagc	Protospacer
 *********** * *********.  * * .

27. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MN694082 (Marine virus AFVG_250M1102, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
gtctggctgccatttttaatccttggggcaga	Protospacer
 *** **********.*********. .. .*

28. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcatgctgccatttttaatcctgagtggttc	Protospacer
*** ***********.******* ..*. *

29. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349270 (Synechococcus phage S-RIM2 isolate RW_40_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

30. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349255 (Synechococcus phage S-RIM2 isolate RW_01_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

31. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349243 (Synechococcus phage S-RIM2 isolate Np_11_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

32. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349269 (Synechococcus phage S-RIM2 isolate RW_34_0905, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

33. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349271 (Synechococcus phage S-RIM2 isolate Sn_25_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

34. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349249 (Synechococcus phage S-RIM2 isolate Np_20_0912, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

35. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349327 (Cyanophage S-RIM12 isolate WH_07_0310, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

36. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349227 (Synechococcus phage S-RIM2 isolate Fa_10_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

37. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349256 (Synechococcus phage S-RIM2 isolate RW_02_0113, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

38. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349233 (Synechococcus phage S-RIM2 isolate LIS_11_1010, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

39. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349260 (Synechococcus phage S-RIM2 isolate RW_11_0905, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

40. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349259 (Synechococcus phage S-RIM2 isolate RW_08_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

41. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349266 (Synechococcus phage S-RIM2 isolate RW_26_0905, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

42. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349250 (Synechococcus phage S-RIM2 isolate Np_23_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

43. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349265 (Synechococcus phage S-RIM2 isolate RW_17_0113, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

44. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349240 (Synechococcus phage S-RIM2 isolate Np_03_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

45. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349258 (Synechococcus phage S-RIM2 isolate RW_03_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

46. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to HQ317291 (Synechococcus phage S-RIM2 R9_2006, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

47. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349236 (Synechococcus phage S-RIM2 isolate NJ_05_1013, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

48. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349282 (Synechococcus phage S-RIM2 isolate W2_14_0910, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

49. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349252 (Synechococcus phage S-RIM2 isolate Np_31_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

50. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349267 (Synechococcus phage S-RIM2 isolate RW_29_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

51. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349253 (Synechococcus phage S-RIM2 isolate Np_33_0912, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

52. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349244 (Synechococcus phage S-RIM2 isolate Np_12_0912, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

53. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349226 (Synechococcus phage S-RIM2 isolate Fa_02_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

54. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349232 (Synechococcus phage S-RIM2 isolate LIS_09_1010, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

55. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349263 (Synechococcus phage S-RIM2 isolate RW_14_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

56. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NC_020859 (Synechococcus phage S-RIM2 R1_1999, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

57. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349257 (Synechococcus phage S-RIM2 isolate RW_02_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

58. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to HQ317290 (Synechococcus phage S-RIM2 R21_2007, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

59. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349279 (Synechococcus phage S-RIM2 isolate W1_16_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

60. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349262 (Synechococcus phage S-RIM2 isolate RW_12_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

61. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349238 (Synechococcus phage S-RIM2 isolate Np_01_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

62. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349254 (Synechococcus phage S-RIM2 isolate Np_36_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

63. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349242 (Synechococcus phage S-RIM2 isolate Np_06_0912, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

64. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349251 (Synechococcus phage S-RIM2 isolate Np_24_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

65. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349281 (Synechococcus phage S-RIM2 isolate W2_13_0910, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

66. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349247 (Synechococcus phage S-RIM2 isolate Np_15_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

67. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349228 (Synechococcus phage S-RIM2 isolate Fa_24_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

68. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349268 (Synechococcus phage S-RIM2 isolate RW_30_0905, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

69. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349241 (Synechococcus phage S-RIM2 isolate Np_04_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

70. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349239 (Synechococcus phage S-RIM2 isolate Np_03_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

71. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349276 (Synechococcus phage S-RIM2 isolate W1_09_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

72. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349264 (Synechococcus phage S-RIM2 isolate RW_16_0905, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

73. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349245 (Synechococcus phage S-RIM2 isolate Np_14_0912, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

74. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349248 (Synechococcus phage S-RIM2 isolate Np_19_1112, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

75. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349272 (Synechococcus phage S-RIM2 isolate W1_01_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

76. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349235 (Synechococcus phage S-RIM2 isolate LIS_14_1013, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

77. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349230 (Synechococcus phage S-RIM2 isolate LIS_02_1013, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

78. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349246 (Synechococcus phage S-RIM2 isolate Np_15_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

79. spacer 1.12|3467442|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to KX349237 (Synechococcus phage S-RIM2 isolate Np_01_0709, complete genome) position: , mismatch: 9, identity: 0.719

ttcttgctgccatttctaatccttgatattaa	CRISPR spacer
ttcttgctgccatttcttatactcagtctgct	Protospacer
***************** ** **...* *

80. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013109 (Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence) position: , mismatch: 9, identity: 0.719

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
cgtgaccgggatggcttgcgtcgctctggtag	Protospacer
   .* *********** ******* ***.*

81. spacer 1.14|3467562|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024309 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence) position: , mismatch: 9, identity: 0.719

gcaaaacgggatggcttccgtcgctgtggcat	CRISPR spacer
cgtgaccgggatggcttgcgtcgctctggtag	Protospacer
   .* *********** ******* ***.*

82. spacer 1.18|3467802|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010680 (Phaeobacter gallaeciensis strain P75 plasmid pP75_g, complete sequence) position: , mismatch: 9, identity: 0.719

tacttccccgatctgcgccaacggctgtttat	CRISPR spacer
cacttctccgatctgcgccaccggatcgcttc	Protospacer
.*****.************* *** *  .* .

83. spacer 1.18|3467802|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045409 (Roseovarius sp. THAF9 plasmid pTHAF9_e, complete sequence) position: , mismatch: 9, identity: 0.719

tacttccccgatctgcgccaacggctgtttat	CRISPR spacer
cacttctccgatctgcgccaccggatcacttc	Protospacer
.*****.************* *** *  .* .

84. spacer 1.21|3467982|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

tggagaaagagcgcaaagagcgtgagaaagca	CRISPR spacer
aagagaaagagctcaaagagcttgaacagtct	Protospacer
 .********** ******** ***. *. *

85. spacer 1.21|3467982|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MG250483 (Aeromonas phage Ah1, complete genome) position: , mismatch: 9, identity: 0.719

tggagaaagagcgcaaagagcgtgagaaagca	CRISPR spacer
gtggtccagaacgcaaagagcgtaagaaagaa	Protospacer
  *.   ***.************.****** *

86. spacer 1.21|3467982|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

tggagaaagagcgcaaagagcgtgagaaagca	CRISPR spacer
aagagaaagagctcaaagagcttgaacagtct	Protospacer
 .********** ******** ***. *. *

87. spacer 1.21|3467982|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to DQ386162 (Streptococcus phage M102AD, complete genome) position: , mismatch: 9, identity: 0.719

tggagaaagagcgcaaagagcgtgagaaagca	CRISPR spacer
aagagaaagagctcaaagagcttgaacagtct	Protospacer
 .********** ******** ***. *. *

88. spacer 1.2|3466841|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038259 (Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence) position: , mismatch: 10, identity: 0.688

taggtaataaggcagtaatgtttcatcttcat	CRISPR spacer
agggtaataaggcactactgtttcaggaaaaa	Protospacer
 .************ ** *******     *

89. spacer 1.17|3467742|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MN693888 (Marine virus AFVG_250M648, complete genome) position: , mismatch: 10, identity: 0.688

ataaaaaaaactatttcaccttcagtgtctcg	CRISPR spacer
gataaacaatctatttcaccttcagttattat	Protospacer
.  *** ** ****************  .*

90. spacer 1.17|3467742|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MN693985 (Marine virus AFVG_250M674, complete genome) position: , mismatch: 10, identity: 0.688

ataaaaaaaactatttcaccttcagtgtctcg	CRISPR spacer
gataaacaatctatttcaccttcagttattat	Protospacer
.  *** ** ****************  .*

91. spacer 1.17|3467742|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to MN693692 (Marine virus AFVG_250M675, complete genome) position: , mismatch: 10, identity: 0.688

ataaaaaaaactatttcaccttcagtgtctcg	CRISPR spacer
gataaacaatctatttcaccttcagttattat	Protospacer
.  *** ** ****************  .*

92. spacer 1.18|3467802|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010627 (Phaeobacter inhibens strain P51 plasmid pP51_d, complete sequence) position: , mismatch: 10, identity: 0.688

tacttccccgatctgcgccaacggctgtttat	CRISPR spacer
cacttctccgatctgcgccaccgggtcacgtc	Protospacer
.*****.************* *** *  .  .

93. spacer 1.18|3467802|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045396 (Roseovarius sp. THAF27 plasmid pTHAF27_c, complete sequence) position: , mismatch: 10, identity: 0.688

tacttccccgatctgcgccaacggctgtttat	CRISPR spacer
cacttctccgatctgcgccaccggatcacatc	Protospacer
.*****.************* *** *  .  .

94. spacer 1.18|3467802|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010607 (Phaeobacter inhibens strain P83 plasmid pP83_h, complete sequence) position: , mismatch: 10, identity: 0.688

tacttccccgatctgcgccaacggctgtttat	CRISPR spacer
cacttctccgatctgcgccaccggatcacctc	Protospacer
.*****.************* *** *  .. .

95. spacer 1.18|3467802|32|NZ_CP009787|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 11, identity: 0.656

tacttccccgatctgcgccaacggctgtttat	CRISPR spacer
gtgctcaccgatctgcgccagcggctgaacca	Protospacer
   .** *************.******  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

210141 : 222082

Herpes_simplex_virus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004715377.1\|210141_213288_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	62.5
WP_004715378.1\|213437_214478_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.4e-87	51.2
WP_002210893.1\|214956_215169_+	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	2.0e-25	80.0
WP_071817895.1\|215366_215606_+	protein DsrB	NA	NA	NA	NA
WP_032817226.1\|215740_217480_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.7e-09	30.9
WP_004715382.1\|218435_219134_+	MgtC family protein	G3MA03	Bacillus_virus	7.3e-16	41.8
WP_004715383.1\|219382_222082_+	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	4.1e-46	25.4

DBSCAN-SWA_2

826986 : 837003

Tupanvirus(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004713015.1\|826986_827685_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	3.3e-08	30.1
WP_004713016.1\|827881_828421_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002211830.1\|828634_828931_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.2e-13	40.0
WP_004713017.1\|828935_831323_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	7.3e-07	25.8
WP_004713018.1\|831337_832321_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	3.4e-35	38.5
WP_004713019.1\|832784_833141_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_004713020.1\|833178_833376_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_011816226.1\|833472_834024_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.4e-16	33.7
WP_004713021.1\|834027_835956_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.5e-127	37.1
WP_004713022.1\|836236_836581_-	superinfection immunity protein	A0A0S2SY85	Pseudomonas_phage	1.1e-17	47.4
WP_032815888.1\|836790_837003_+	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	1.3e-08	40.6

DBSCAN-SWA_3

1456615 : 1467312

Escherichia_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032817411.1\|1456615_1457665_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.3e-20	32.1
WP_032817413.1\|1457773_1458292_-	DUF2127 domain-containing protein	NA	NA	NA	NA
WP_004715661.1\|1458920_1461338_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.3e-263	55.7
WP_004715662.1\|1461349_1461967_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	3.7e-88	68.8
WP_004715663.1\|1461968_1462745_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	6.2e-40	40.6
WP_032817415.1\|1462834_1463449_+	molecular chaperone	A0A077SLS7	Escherichia_phage	4.7e-43	49.2
WP_004715665.1\|1463458_1463782_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_032817417.1\|1463905_1464337_+	hypothetical protein	Q7Y3V7	Yersinia_phage	3.4e-24	48.2
WP_128824054.1\|1464668_1464743_+	membrane protein YpdK	NA	NA	NA	NA
WP_004715667.1\|1464879_1465404_-	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.0e-26	52.9
WP_004715668.1\|1465434_1466667_-	alanine transaminase	NA	NA	NA	NA
WP_004715669.1\|1466796_1467312_-	GNAT family N-acetyltransferase	D0R097	Streptococcus_phage	3.6e-12	28.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage