CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009780	Yersinia pseudotuberculosis PB1/+ chromosome, complete genome	10 crisprs	DinG,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	0	9	5	0
NZ_CP009779	Yersinia pseudotuberculosis PB1/+ plasmid pYAB, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009780_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_1

511256-511339

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009780_1

>merge|NZ_CP009780|1|511256-511339|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAAAAGCCAACGACGGATCTCTTCAACGGCAATGCGTTCACTGCCGTACAGGCAGCTTA

>NZ_CP009780|1|1|511256-511339|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTA	GAAAAAGCCAACGACGGATCTCTTCAACGGCAATGC
GTTCACTGCCGTACAGGCAGCTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_002210296.1\|511346_512201_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP009780.1\|WP_002210302.1\|519971_521000_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009780.1\|WP_011191918.1\|512542_514069_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP009780.1\|WP_144404817.1\|502347_504660_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|273954
NZ_CP009780.1\|WP_011191921.1\|518412_519960_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009780.1\|WP_011191920.1\|516322_517309_+\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
NZ_CP009780.1\|WP_011191916.1\|500359_501217_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_012413538.1\|521023_522157_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP009780.1\|WP_002209751.1\|498195_498435_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_012413536.1\|504767_510746_-\|alpha-2-macroglobulin	unknown	unknown	gnl\|CDD\|225248
NZ_CP009780.1\|WP_002209745.1\|501889_502135_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NZ_CP009780.1\|WP_011191915.1\|498748_499228_+\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NZ_CP009780.1\|WP_032467032.1\|499965_500367_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP009780.1\|WP_011191913.1\|495470_497387_-\|autotransporter-adhesin-YapC	unknown	unknown	gnl\|CDD\|273608
NZ_CP009780.1\|WP_011191924.1\|524400_525321_+\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP009780.1\|WP_002209748.1\|499332_499734_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP009780.1\|WP_041175491.1\|514103_516029_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|226471
NZ_CP009780.1\|WP_002210300.1\|517434_518364_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380623
NZ_CP009780.1\|WP_011191914.1\|498473_498725_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_012413539.1\|522205_524194_+\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_002210296.1\|511346_512201_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.17523e-68
NZ_CP009780.1\|WP_002210302.1\|519971_521000_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.15893e-97
NZ_CP009780.1\|WP_011191918.1\|512542_514069_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP009780.1\|WP_144404817.1\|502347_504660_-\|penicillin-binding-protein-1C	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP009780.1\|WP_011191921.1\|518412_519960_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP009780.1\|WP_011191920.1\|516322_517309_+\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	8.04969e-171
NZ_CP009780.1\|WP_041175491.1\|514103_516029_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|226471	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism].	0
NZ_CP009780.1\|WP_012413538.1\|521023_522157_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.58497e-69
NZ_CP009780.1\|WP_012413536.1\|504767_510746_-\|alpha-2-macroglobulin	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP009780.1\|WP_002209745.1\|501889_502135_+\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	5.27401e-36
NZ_CP009780.1\|WP_002209748.1\|499332_499734_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	7.32611e-43
NZ_CP009780.1\|WP_032467032.1\|499965_500367_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	4.36414e-40
NZ_CP009780.1\|WP_011191913.1\|495470_497387_-\|autotransporter-adhesin-YapC	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.35553e-105
NZ_CP009780.1\|WP_011191924.1\|524400_525321_+\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	3.13199e-163
NZ_CP009780.1\|WP_011191915.1\|498748_499228_+\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	6.03614e-76
NZ_CP009780.1\|WP_002210300.1\|517434_518364_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380623	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins. The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.	4.31227e-120
NZ_CP009780.1\|WP_012413539.1\|522205_524194_+\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0

>NZ_CP009780.1|WP_012413536.1|504767_510746_-|alpha-2-macroglobulin
MDLLRFLLISPFALIKGLYRLSAYLLRLVGRLLRPVVGNLNWRAPQWMTKTANGLHCAFNRSEQWVAKHPKGISAAIVLLMAAASATFYGYHWYLNRPQPIEPAPMVYQETSIRVSTPRTVNYQAQKPEAQPLSLNFMHSAAPITAMGQVVDQGISLTPAIEGEWKWATERTLVFTPKKAWPMGANYQITIDAEKLLAPQIKLNQTELNFTTPAFAYQLEKAEYYQDPQEAQKRSTIFHVQFNAPVDVASFEKQILLGLVEGKSKSEKKLNFSVVYDEKKLNAWIHSQPLMPMDKGGSVHLSINKGVNASVAATPTTQAQNKWVSVPNLYSLAVNSINATLVESDNNNGERALIIAISDAVKDKEIKNAVKAWLLPQHNFQAKESAKTSTDFYPWDMDDIDDNLLQQSTPLALTLNEAEQEYQPIFSFKFDAPSYRTLLIEVNNSLTSVGGYKMPEKIYQIVRVPDYPKTLRFMSQGSLLSMQGDKQISVAARNMTGMKLDIKRVIPSQLQHIVSFKSSEYSSAHFNRLSDEYFTEHFQYQTALNNDNPGEINYQGVDLSRYLANNPSARRGVFLLTLSAWDQEKRDNQQHSEEDYDEDQEWVGDSRFVVITDLGIITKQSQDRSRDVFVQSIHSGLPAADAKVSVVAKNGVVLLSQITDSKGHVHFPALDAFKNERQPVMFLVEKEGDVSFLPTRATYDRNLDFSRFDIDGEETPSDPRTLSSYLFSDRGVYRPGDRFNIGLITRTANWATALDGVPLRAEIRDPRDTLMSTLPITLDSSGFNELSYTTGENSPTGEWNVYLYLVGKNNETSMLLGHTTVNVKEFEPDRLKVQLQLTPERQQGWVKPQELQANINVQNLFGTPAQERRVTSRLILRPMYPSFAPFPDYLFYENRHNSDGFETELEEQTTDLQGMATIPLDLKSYADATYQLQLLSEAFEAGGGRSVAATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYISVLTKQDSGVYKYQSRLKEQLVSEQPLKISPTGTDFTLVTQQPGDFILVVKDSQGQVLNRISYTVAGNANLTRSLDRNTELKLKLNQAEYLQGEEIEIAINAPYAGSGLITIEKDKVYSWQWFHSDTTSSVQRIRIPPAMEGNGYINVQFVRDVNSDEIFMSPLSYGVMPFKISTKARQAAIELASPSVIKPGEVLPIKVTTDSPQRVVVFAVDEGILQVARYRLKDPLDYFFRKRELSVQSAQILDLILPEFSKLMALTSAPGGDSGEGLDLHLNPFKRKQDKPVAYWSGITEVNGETTFNYPIPDYFNGKIRVMAISATPDRIGKVQTSTTVRDNFILTPNVPAMVAPGDEFDVTVGVSNNLQGLKGKAVDITVRLTPPPQLEVVGEAQHSLSLAEKRETLVSFRLRARSALGDAPLVFDASYGSQSSRRTVSTSVRPAMPFRTQSVMGRMEGNKHTVTNLRQMFDNYAQRQATASHSPLVLTQGLARYLADYPYYSSEQIVSRSIPLIMQSKHPEMDSALNQNEVRDQLKNMLRILSSRQNSTGAIGLWHASPTPDPFVTPYVVQFLLEAKSAGYSLPNDILEGANNALRLLAARPYDDLYSLRLRAFAVYLLTLQGEITTNTLASVQSTLQQLYPDSWQTDLSAIYLASSYRLLKMDDEANKLLQPTWKQLGKAYSKAWWTQNYFDPLVQDATRLYLITRHFPEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQIIEISKSKGIDPNVISTLNGLFVQGDFTGEAKAIQFNNYASAPAWYVVNQSGYDLQPPKDAISNGLEISRSYTDEQGKPVTQVTLGQKVNVHLKIRANAKQGQNNLAIVDLLPGGFEVIQQTAPEPEFYDNQDDQDEETGSGWQSPLMVSGSSWYPDYSDIREDRVIIYGSASTDVKEFIYQIKSTNTGRFVVPPAYGEAMYDRNVQALSVGKGHILVVPPEAK
>NZ_CP009780.1|WP_144404817.1|502347_504660_-|penicillin-binding-protein-1C
MALFLLALLVIGFRLWPHPPLSQGLPLSTAYYDRHGTLLRLSLANDDRYRLWTPLEEISPLVIQGIQLHEDRGFYYHPGVNPISLLRGFWQSYVQGGRQQGGSTLTMQLARMHWHLNTRSPTGKLRQIARAIQLELSYSKHDILEAYLNYAPYGRNIESIAAASLIYFDKKTQQLTLPEALTLAVLPQSPSYRIDPTTGVLGSALTQARNRLFVRWQQTYPIDSSQMALFQLPLSLRQPEKMPYIAPHFIEQIRRQNQQLANTQSQVDTTLDANLQQLVEKQVEAFIRRNNSRGIHNAAVLLLDTRDMGVRALVGSANYYDREIQGQVNGTNAKRSPGSTLKPFIYALGLEQGILHPMTILKDVPSSFGAYAPENFDHRFLGPVTATDALNFSRNIPAVYVASRLRQPTLYQFLRLSGVTNMASENHYGLSLVLGGGEITLQELARLYAMLANRGTLHPIQMVQTDKTLPSIRLLSEAASFITLDMLRQHRRPGDTLAQSPTSLPVYWKTGTSWGFRDAWSAGIFGPYVLIVWEGNFAGKGNSAFVGADAAAPLFFNIIDSIQANYPALREPKHPWPPQLKRVAICLASGNLPTPWCQQQGKTWFIPGKSPIKVDTVYRPVVIDINSGQAACLPYDRSQTRTEVFEFWPSDLANVFAQAGLPKRQPPDRSHCKEGNTLASGNAPRITSPLRNTTYTLRQSQQGRDQIVFSATLDADSTTTYWFVDDIYLGSSTSKKSIDWHPTRSGQYRIRAIDDHGRADSRLIRVEKVD
>NZ_CP009780.1|WP_002209745.1|501889_502135_+|transcriptional-regulator
MDKQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEIWPSRYLKPKKSPAESVNPG
>NZ_CP009780.1|WP_011191916.1|500359_501217_-|hypothetical-protein
MKYDSVLKTFVDDDYRLEDHLDFKKQHADIRYQKLHKQLNEMSDENMHALLTIEEGEYFLKTLCNPNPHQSWKDAIFSCTDPTSVFFGSLVESLSVSRIVFEIRGFGVTATEYVGKNGSSYIKLSGYAGIRKYLDATRYLIDNPKILDIGIGTQSIENGIVRGARFCIVFSAAYRSVELLLKDEYGLADFFVNLTLDAAKLGVSIGVAWGAKALATGFMVAGGSVLAIAIGIFTIGVLASLILYWLDNEYKISETIIKNIKSHRVQNSPYHADQFFNAWGRLSRG
>NZ_CP009780.1|WP_032467032.1|499965_500367_-|DUF1240-domain-containing-protein
MVKINRPLVGAFAILLFFLSSWGCWFSLSGYLAFFKLSDVIIFSWKVGFVIFAVPLLFYFSYLAFFSAIKNKPAIMNNKLANALAILAILGSIISLFSSAYISYSLTEYSYKSCPRSSWMSPNEYVKDIKLCP
>NZ_CP009780.1|WP_002209748.1|499332_499734_-|DUF1240-domain-containing-protein
MVKINRPLFGAFAVFLLFLSCWVSWFSLNGYWDFFKLSDVIIFSWKVGVMIFGAPVLFYFSYLAFYCAIKNKPAKVNNKLANTFAMLAMLGVVISFFSSVYIGYSLTEYGYKLCSRSSWMSPNEYVKDIKLCP
>NZ_CP009780.1|WP_011191915.1|498748_499228_+|Hcp-family-type-VI-secretion-system-effector
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENERIDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY
>NZ_CP009780.1|WP_011191914.1|498473_498725_+|hypothetical-protein
MMKNNKNINKDEFSDKLAQQIKEMINNSQLDSVEILSVVMESIFSLFSETEGHLAEMKFIDSAGEDYRFILRLEVPPILERQH
>NZ_CP009780.1|WP_002209751.1|498195_498435_+|hypothetical-protein
MEKEKKTLFGHKTPAMMQLSEQLESSLHNSPLVPEEKLALIMKLCVLLFRENKTDAAEMKVSDGRILKLTLEKTSSVLH
>NZ_CP009780.1|WP_011191913.1|495470_497387_-|autotransporter-adhesin-YapC
MDKTLLAGAISLSLVTLPVQVLAFTPNVVGITVNDEVVIHGIQNVRDGGVINNGLVSDNAAITVTNGSSAGTANNTTVGDKGWLQITGALATGTIVNQGGLLDTKTAGTVIDSQINDGGHMTLGLNSQSKGYLNIAAGAELFVTNNDPYTSDVTTHNPALPANVMIENLNVAGLVEIGPSWKGTSIVPLPLSDVLGPVLVTRINNVTLQGGDINLMAYSAGGQFNRLEIENLSGQGNFAMTTQLASNTGDFITVSQQATGQFGITVQDSGKEPQSADNLALVHINRGDAQFRLLNTGGVVDLGVYQYGLYSQESNGSTDWYLATSTEELPGTTPNVTAPMLSSAAQGVLNMAAAPRHILNAELSTLRQRQGELKADAEGTVGVWARYLTDDSRLSDNKNIAFKNTLSGMEIGADKQLGLNRGNMLIGAFTSYSSSDVKSTHGANGDIRSYGGGLYLTYLDQSGFYVDTVLKANRFNNKMNTQETRGEYNQNALTTSVESGYQWPVYANLVLEPYGKVSYSRIGSADYTLSNGMVAEVAKADSVQGELGTVLAASYSINQMTIKPYIKLAITREFTKSNAVAINNIGFDNDFSGNVGKYGVGINATVANNTAIFAEVDYLNGSKIETPVTANIGFRLRF
>NZ_CP009780.1|WP_002210296.1|511346_512201_-|MurR/RpiR-family-transcriptional-regulator
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAERADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMESEAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVVGLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSISFSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDAFRSQSATLCLVQSLVVALAYQQEAQAGAALAHRQ
>NZ_CP009780.1|WP_011191918.1|512542_514069_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
METVANFINGKCVFSCGNSITSGSPRAQTIFNSATGEPIRQVMMSTAQETEQAITAAQQAFASWSRQAPLKRARVMFRFKSLLEQHLDALAQLISEEHGKVYSDAVGELTRGLEVVEFACGIPHLQKGEHSANVGTGVDNHSLMQPLGVCVGITPFNFPAMVPMWMFPIALATGNTFVLKPSEKDPSLAVRLAQLLTEAGLPDGVFNVVQGDKTAVDVLLTDPRVQAVSFVGSTPIAEYIYQTASAHGKRCQALGGAKNHCILMPDADMDMAASAIMGAAYGAAGERCMALSVVLAVGDETADNLCARLEQQISTLRVGPGLAQEPENDMGPLISAPHRAKVLGYIDSGVAQKATLRIDGRGLKVAGHEQGYFVGPTLFDHVTPAMTIYQEEIFGPVLSVVRIADYRSAVDLINRHEYGNGTAIFTRDGGTARRFCEEVQVGMVGVNVPIPVPVAFHSFGGWKRSIFGPLNVHGNDGVRFYTRMKTITARWPEAQHDQGAAFSMPTLG
>NZ_CP009780.1|WP_041175491.1|514103_516029_+|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MKTVRMTMAQALVRFLNQQYVAIDGQEVAFVHGVMTIFGHGNVLGIGQALEENPGHLQVHQGCNEQGMAHMAIGFAKQYRRQRIYAVSSSIGPGAANMVTAAATATANRIPLLLLPGDIYASRQPDPVLQQIEQYHDLSISTNDCFRPVSRYWDRINRPEQLMSAMLSAMRVLTDPADTGAVTLCLPQDVQGEAWDYPASFFERRVHRIERRPPDTRRLSDALSLIARKRRPLVVCGGGVRYSGAHEAFRAFVENAQLPFTETQAGKGALPSDHPLNLGGIGVTGGLAANRLAPQADLVIGIGTRLTDFTTGSKALFSHPEVAFLLLNVAEFDALKLDATALIADARVGLEALTEGLAGYRTAWQGDIIEAKAAWCDECQRLWSRTWRPDEVPEVAGHLDDSLQEYAEVLNTTLTQTRVLGLINQHIEDDAIVVGAAGSLPGDLQRLWQVKTADTYHLEYGYSCMGYEIAAAIGAKIAMPHQPVYAMVGDGSYMMLHSELHTAVQEGLKITVLLFDNAGFGCINNLQMGHGMSSFCTESRHRNHESGQLNGPLICVDFAQNAESYGCRAWRVHDEPSLLAALAASRDHPGPVLLDIKVLPKSMTHDYASWWRTGDAQIARSPAVQQAAERTQMKVKRARQY
>NZ_CP009780.1|WP_011191920.1|516322_517309_+|inositol-2-dehydrogenase
MFNIALLGAGRIGQVHAANIAAHPETTLWSVVDPNQENAARLVSQYRTRQQSVNEAMADLNVHAVLIASATDTHADLIELAAKHGKTIFCEKPVHLDLARVRDCLKVVKEYGVPLFIGFNRRFDPQFRHLKNEVLAGRIGKPESLLIISRDPSPPPVEYVRVSGGMFRDMTIHDFDMARFIMGEEPVAVFAQGSNLVDPAIGAAGDIDTAFVVLKYASGAMATIVNSRRSAYGYDQRLELHGSQGLLCVGNILENQVQHFGQKGGTRALPEHFFLQRYQAAYAAEWEHFVAVLRGDVQPECGGEEGERALYLADKALESLHSQREISL
>NZ_CP009780.1|WP_002210300.1|517434_518364_+|sugar-ABC-transporter-substrate-binding-protein
MKKLILAALIVFTSGVAFAENEQIVFSTPNLAMPFEVHMQRTAVKTAKALGVKLQVLDGQGSSPKQVADLENAITRGAQGFIVSPNDINAISSAVEEIQQAKLPVVTLDRSVESEKKVPHFGANNYKGGEAIANYVKSMFPNGAEIVLLTGQPGSSSNIERTKGIRDSLKTGGDKYRIVVDQTGNWMRSEGMRIIESVLPSLPKPPQVILSANDDMALGAIEALQSHGMKPGEIMVTGFDAVPEALARVREGWMAVTADQRPGYAVTTAMNQLVANIRDQKAITGADFLPTMITKENLDQAERVSEAGK
>NZ_CP009780.1|WP_011191921.1|518412_519960_+|sugar-ABC-transporter-ATP-binding-protein
MSQPLLKITDMAKSFSGVWALSNVQLTVEQGEIHALLGENGAGKSTLLKALSGAQPQTHGEIWFNGEMLALDDSPVERQNKGIITIYQEVNLLPNMTVAENMFLGREPRRRQVFVDEKAVNQEAQAILDYLQLNVLPTTAVARLSIAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVESLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRYTGSDEVAGTNVEKIIRLMVGRDVVFNRRPASETHHQDQPIRLSVQGLCREKPPLDPHGVALKDISFHVHAGEVLGIAGLVGAGRTEVARCLFGAGAFTSGNFEIDGVPYQPRDPMFALEQGIALVPEDRKKEGAVQGLSIRDNLTLSSLAGLLQWRFFVNTRKEDQLIETYRLALQIKMVNSEQAVRKLSGGNQQKVILARCMALNPRILIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVLAVSDRVITLSEGRVTGEIHGDDASEERLMTMMAINHNALNAA
>NZ_CP009780.1|WP_002210302.1|519971_521000_+|ABC-transporter-permease
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
>NZ_CP009780.1|WP_012413538.1|521023_522157_+|Gfo/Idh/MocA-family-oxidoreductase
MKEVRIGLIGTGYIGKAHAIAYAQAPTVFELRGKLVREMVAEVSPALAAQRAQAFGFNRFTCDWRELVADPAIDVVDICSPNYLHKEMALAAIHHGKHVYAEKPLALNARDASEMAAAATRAGVKTLVGFNYIKNPSAKLAKEIIERGEIGEVIHFYGTHNEDYMAAPNTPIHWHCLQATAGLGTLGDLAAHIVSMAQYLVGEITQVCGDLKTVVVTRPASVGSSARVAVENEDQAHAMVRFVNGAQGVIEASRVACGRKMGLSYMITGTQGAISFTQERMAELKLYLHNDPVNRQGFRTLLVGPTHPEYAAFCMAAGHGIGFNDQKTVEVRDLIDGIAMDTPLWPDFAEGWKVSRILDAIALSHQDSRWVNVTDIV
>NZ_CP009780.1|WP_012413539.1|522205_524194_+|5-dehydro-2-deoxygluconokinase
MSVEKQFSVSAEKTCNTENKCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTHLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGSTNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGFDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK
>NZ_CP009780.1|WP_011191924.1|524400_525321_+|myo-inosose-2-dehydratase
MRKTEADRHTTAVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFAGFELGNKFSREAGVLGPILEHHQLKLVSGWYSGRLLERSVEEEIVAVRSHLALLRELGAKVMVFAEVSGCIHGEQQTPVHLRPRFPPARWAEYGAKLTAFARYTQALGVQIAYHHHMGTVIESAQDIDNLMIHTGEEVGLLLDTGHLTFAGADPLAVAQRWIARINHVHCKDVRTSVLADVKNRKTSFLDAVLSGVFTVPGDGGVDYPLIMALLKQHGYQGWLVVEAEQDPNVAHPMTYARMGYHNLSRLAHNAGLI

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Crispr_ID: NZ_CP009780_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_2

1010667-1010788

Orphan

Consensus_repeat	Method
CTTAATGCCAATATTAATCGACATAATCAATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009780_2

>merge|NZ_CP009780|2|1010667-1010788|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTGTAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCTCTTAATGCCAATATTAATCGATATAATCAATTG

>NZ_CP009780|2|2|1010667-1010788|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTG	TAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCT
CTTAATGCCAATATTAATCGATATAATCAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_002213017.1\|1018238_1018487_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851
NZ_CP009780.1\|WP_002213060.1\|999287_999752_-\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_CP009780.1\|WP_002213058.1\|999930_1000611_-\|DUF2057-family-protein	unknown	unknown	gnl\|CDD\|179619
NZ_CP009780.1\|WP_002213024.1\|1016885_1017674_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP009780.1\|WP_002213046.1\|1003443_1003773_-\|sulfurtransferase-TusE	unknown	unknown	gnl\|CDD\|225472
NZ_CP009780.1\|WP_002213054.1\|1001451_1001769_-\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|184526
NZ_CP009780.1\|WP_002228570.1\|1017760_1018201_+\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NZ_CP009780.1\|WP_002213028.1\|1014178_1015417_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NZ_CP009780.1\|WP_002213038.1\|1009667_1010414_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP009780.1\|WP_002213026.1\|1015409_1016129_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP009780.1\|WP_002213056.1\|1000926_1001343_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP009780.1\|WP_002213049.1\|1003113_1003392_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|184675
NZ_CP009780.1\|WP_002213025.1\|1016130_1016883_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235936
NZ_CP009780.1\|WP_002213034.1\|1011626_1012151_+\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP009780.1\|WP_011192072.1\|997172_999227_+\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|182930
NZ_CP009780.1\|WP_002213052.1\|1001829_1003020_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|185082
NZ_CP009780.1\|WP_011192074.1\|1012140_1013424_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NZ_CP009780.1\|WP_002213036.1\|1011144_1011363_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_011192073.1\|1007096_1009514_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366708
NZ_CP009780.1\|WP_012105362.1\|1013425_1014163_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_002213017.1\|1018238_1018487_+\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09
NZ_CP009780.1\|WP_002213060.1\|999287_999752_-\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.55286e-93
NZ_CP009780.1\|WP_002213058.1\|999930_1000611_-\|DUF2057-family-protein	gnl\|CDD\|179619	PRK03641, PRK03641, DUF2057 family protein.	4.09411e-122
NZ_CP009780.1\|WP_002213024.1\|1016885_1017674_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.49415e-40
NZ_CP009780.1\|WP_002213046.1\|1003443_1003773_-\|sulfurtransferase-TusE	gnl\|CDD\|225472	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism].	2.4785e-71
NZ_CP009780.1\|WP_002213028.1\|1014178_1015417_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	1.57028e-141
NZ_CP009780.1\|WP_002213054.1\|1001451_1001769_-\|heat-shock-protein-HspQ	gnl\|CDD\|184526	PRK14129, PRK14129, heat shock protein HspQ; Provisional.	3.64231e-72
NZ_CP009780.1\|WP_002228570.1\|1017760_1018201_+\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NZ_CP009780.1\|WP_011192073.1\|1007096_1009514_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	8.27787e-32
NZ_CP009780.1\|WP_002213038.1\|1009667_1010414_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NZ_CP009780.1\|WP_002213026.1\|1015409_1016129_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35
NZ_CP009780.1\|WP_002213056.1\|1000926_1001343_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.53332e-71
NZ_CP009780.1\|WP_002213049.1\|1003113_1003392_+\|acylphosphatase	gnl\|CDD\|184675	PRK14426, PRK14426, acylphosphatase; Provisional.	1.02172e-54
NZ_CP009780.1\|WP_002213025.1\|1016130_1016883_+\|enoyl-CoA-hydratase	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	2.57932e-133
NZ_CP009780.1\|WP_011192072.1\|997172_999227_+\|DNA-helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	0
NZ_CP009780.1\|WP_002213034.1\|1011626_1012151_+\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	1.09929e-42
NZ_CP009780.1\|WP_011192074.1\|1012140_1013424_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.45409e-137
NZ_CP009780.1\|WP_002213052.1\|1001829_1003020_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	gnl\|CDD\|185082	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI.	0
NZ_CP009780.1\|WP_012105362.1\|1013425_1014163_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.19775e-68

>NZ_CP009780.1|WP_002213038.1|1009667_1010414_-|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NZ_CP009780.1|WP_011192073.1|1007096_1009514_-|GNAT-family-N-acetyltransferase
MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGLLIFSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQLAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVKEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGRLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQPGANN
>NZ_CP009780.1|WP_002213046.1|1003443_1003773_-|sulfurtransferase-TusE
MLEFEGRIIDTDAQGYLKNSTDWSEALAPVLAEQEGITLTEPHWEVVRFVRAFYQEFNTSPAIRMLVKAMAQKYGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
>NZ_CP009780.1|WP_002213049.1|1003113_1003392_+|acylphosphatase
MSKIYIVAYVYGVVQGVGFRYSTQRQAQQLGVTGYAKNCDDGSVEVVASGNPQAVERLMEWIRQGGPRGARVDRLLTEPYPPTPFETFSIRY
>NZ_CP009780.1|WP_002213052.1|1001829_1003020_-|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI
MTVRLILAKGREKSLLRRHPWIFSGAVQRLEGDALSGETIDILDSQGKWLARAAYSPESQILARVWTFQQDEVIDCAFFIRRLQQAQNWRDWLAQRDGLNGYRLIAGESDGLPGITIDRFQNFLVLQLLSAGAEYQRETLVSALQHCYPECSIYDRSDVSVRKKEGLPLTQGLICGEMPPALLPISENGMQLFVDIQQGHKTGFYLDQRDSRLAARNYANGRRVLNCFSYTGAFAVAALMGNCQQVISVDTSQSVLDIAKQNIELNQLDLSKTEFVRDDVFQLLRSYRAQGEKFDLIIMDPPKFVENKSQLASACRGYKDINMLAIQLLRPGGILLSFSCSGLMPVDLFQKILADAALDAGHDIQFIEQFRQAADHPVIAAYPEGLYLKGFACRVM
>NZ_CP009780.1|WP_002213054.1|1001451_1001769_-|heat-shock-protein-HspQ
MIASKFGIGQQVRHSLHGYLGVVIDIDPEYSLAPPEPDEVANNKTLRSSPWYHVVIEDDDGQPVHTYLAEAQLTYEDVDAHPEQPSLDELAASIRHQLQAPHLRN
>NZ_CP009780.1|WP_002213056.1|1000926_1001343_+|CoA-binding-protein
MHDKDIADILKKVKTIALVGASDIPSRPSYRVMAYLLQQGYQVTPVNPKLAGELLLGQLVYAELADIPHAIDMVDVFRNSDAAYCIAQDAIAIGAKVLWLQIGVINEQAAILATDAGLQVVMDRCPKIELPRLGLEKG
>NZ_CP009780.1|WP_002213058.1|999930_1000611_-|DUF2057-family-protein
MKLGLVAGMLAVCFSFSSVAMTLKLTPEIDLLVVDGKNMSGSLLKGADSLELNSGMHQILFKVIKPLPTDPLVLYSSPPLIVVFNAHNTRSVAIKLPVINTLRDGHQFSKNPLYQLIGDNGHPLSVRHDVLRQDHLNNSTTLETVMAAYNVGKYNASVPAFAAIPPSPVSAVPGTTIPVAGVNTPHKTASLQGENVTEQMLQYWFLQANPETQKRFLIWAKKQPIH
>NZ_CP009780.1|WP_002213060.1|999287_999752_-|methylglyoxal-synthase
MELTTRTIAARKHIALVSHDHCKKSLLAWVMENRDLLAQHELYATGTTGNLVQKATGIDVHCLLSGPMGGDQEVGALISEKKIDILIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNRSTADFLIGSTLFSSEVTIAIPDYDRYMQQRLDLK
>NZ_CP009780.1|WP_011192072.1|997172_999227_+|DNA-helicase-IV
MELKATSFGKHLSQHPYNRVRLLNAGIEVCGDKHQYLIPFNQLVSIQCKRGIVWGELEFELPQQKVVRLHGTEWQETQHFYHYLLGVWQQWSEEMSQVCAEVLHKQVESIKRIEQQDKWFKRSELGQIQVMIREAFSALPMPVERLAAFESCRADYECCLRWLQQGRHSVERCNQQWTARMLEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKKAQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLMRMHGGSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQLEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPDAEERRLLYVAITRAKHQVWLLQDTARPSIFVSQLSELGALVQRKP
>NZ_CP009780.1|WP_002213036.1|1011144_1011363_+|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NZ_CP009780.1|WP_002213034.1|1011626_1012151_+|beta-hydroxyacyl-ACP-dehydratase
MKNTELNFLKTNFLFNQDITNELNTSFGQDIIKKMIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NZ_CP009780.1|WP_011192074.1|1012140_1013424_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPDYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLILEQAEHAKNRGAKIYAELLGASVNSDANHLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNIKKEVNIFLNNSFGMGGINSASLFSRYHG
>NZ_CP009780.1|WP_012105362.1|1013425_1014163_+|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEVILFLVAKESSYVNGAVFNVTGGIDWVY
>NZ_CP009780.1|WP_002213028.1|1014178_1015417_+|hydroxymethylglutaryl-CoA-synthase-family-protein
MNSIGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLPWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NZ_CP009780.1|WP_002213026.1|1015409_1016129_+|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NZ_CP009780.1|WP_002213025.1|1016130_1016883_+|enoyl-CoA-hydratase
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLELLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NZ_CP009780.1|WP_002213024.1|1016885_1017674_+|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQAFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NZ_CP009780.1|WP_002228570.1|1017760_1018201_+|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NZ_CP009780.1|WP_002213017.1|1018238_1018487_+|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES

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Crispr_ID: NZ_CP009780_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_3

1134893-1135644

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

12 spacers

DEDDh

The CRISPR arrays of NZ_CP009780_3

>merge|NZ_CP009780|3|1134893-1135644|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAAAATCGTTGGTTCTGCGTTTGCTACAGTCACCAGTTCACTGCCGCACAGGCAGCTTAGAAAGCAAAGAAGACCACTCAGATGAGGTAAAGCATGTTCACTGCCGCACAGGCAGCTTAGAAATAACCCACTGTTAAATGCAGAGGGTAATGCTGGTTCACTGCCGCACAGGCAGCTTAGAAAAAGTAAGGCACAGAAGGTTGTCACAATGACAAGTTCACTGCCGCACAGGCAGCTTAGAAAATTTCCGCCAGATTCCATAGCGCTATTACTAAGTTCACTGCCGCACAGGCAGCTTAGAAACAAACGGATTACAAAAATGGGGTGTATTTAGCAGTTCACTGCCGCACAGGCAGCTTAGAAAATCTTTAAACATATTTAAATCTATTGCTAATTGTTCACTGCCGCACAGGCAGCTTAGAAACCGATGGTCCGGCAATACCGATAACCACTTTTGAGTTCACTGCCGCACAGGCAGCTTAGAAAAACAACGCCGCAGACGCAACCAGTGCCAATACGTTCACTGCCGCACAGGCAGCTTAGAAACCTGCCTGAATAGGGTGCATCAGCAAACCAAATGTTCACTGCCGCACAGGCAGCTTAGAAATCAAAAACCTGATGGCAGTGGCCCGGCAATATGTTCACTGCCGCACAGGCAGCTTAGAAATCAGGCTGGCGGCGAAATCACCACCTTTGCATGTTCACTGCCGCACAGGCAGCCCAATAA

>NZ_CP009780|3|1|1134893-1135584|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCGTTGGTTCTGCGTTTGCTACAGTCACCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCAAAGAAGACCACTCAGATGAGGTAAAGCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAACCCACTGTTAAATGCAGAGGGTAATGCTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTAAGGCACAGAAGGTTGTCACAATGACAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTCCGCCAGATTCCATAGCGCTATTACTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAAACGGATTACAAAAATGGGGTGTATTTAGCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCTTTAAACATATTTAAATCTATTGCTAATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGATGGTCCGGCAATACCGATAACCACTTTTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AACAACGCCGCAGACGCAACCAGTGCCAATAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCAAAAACCTGATGGCAGTGGCCCGGCAATAT
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP009780|3|3|1134893-1135644|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCGTTGGTTCTGCGTTTGCTACAGTCACCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCAAAGAAGACCACTCAGATGAGGTAAAGCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAACCCACTGTTAAATGCAGAGGGTAATGCTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTAAGGCACAGAAGGTTGTCACAATGACAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTCCGCCAGATTCCATAGCGCTATTACTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAAACGGATTACAAAAATGGGGTGTATTTAGCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCTTTAAACATATTTAAATCTATTGCTAATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGATGGTCCGGCAATACCGATAACCACTTTTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AACAACGCCGCAGACGCAACCAGTGCCAATAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCAAAAACCTGATGGCAGTGGCCCGGCAATAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCAGGCTGGCGGCGAAATCACCACCTTTGCAT
GTTCACTGCCGCACAGGCAGCCCAATAA

>NZ_CP009780|3|1|1134893-1135644|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCGTTGGTTCTGCGTTTGCTACAGTCACCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCAAAGAAGACCACTCAGATGAGGTAAAGCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAACCCACTGTTAAATGCAGAGGGTAATGCTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTAAGGCACAGAAGGTTGTCACAATGACAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTCCGCCAGATTCCATAGCGCTATTACTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAAACGGATTACAAAAATGGGGTGTATTTAGCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCTTTAAACATATTTAAATCTATTGCTAATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGATGGTCCGGCAATACCGATAACCACTTTTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AACAACGCCGCAGACGCAACCAGTGCCAATAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCAAAAACCTGATGGCAGTGGCCCGGCAATAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCAGGCTGGCGGCGAAATCACCACCTTTGCAT
GTTCACTGCCGCACAGGCAGCCCAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_011192126.1\|1133005_1134397_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP009780.1\|WP_011192127.1\|1135678_1137109_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP009780.1\|WP_002216312.1\|1131454_1132546_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP009780.1\|WP_012413636.1\|1144985_1145408_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP009780.1\|WP_002211896.1\|1124116_1125016_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NZ_CP009780.1\|WP_011192124.1\|1128620_1129616_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009780.1\|WP_011192122.1\|1122781_1124113_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NZ_CP009780.1\|WP_012304241.1\|1137401_1138511_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187547
NZ_CP009780.1\|WP_012413635.1\|1129612_1131169_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009780.1\|WP_032467070.1\|1139405_1142480_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP009780.1\|WP_002217522.1\|1138944_1139262_+\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NZ_CP009780.1\|WP_011192131.1\|1146623_1147466_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP009780.1\|WP_002216393.1\|1145835_1146576_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
NZ_CP009780.1\|WP_011192123.1\|1126855_1127512_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_002211919.1\|1149052_1150198_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	unknown	unknown	gnl\|CDD\|183033
NZ_CP009780.1\|WP_002211911.1\|1143672_1144977_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP009780.1\|WP_002211917.1\|1147497_1148775_+\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NZ_CP009780.1\|WP_157131899.1\|1127928_1128219_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374732
NZ_CP009780.1\|WP_002211898.1\|1125721_1126549_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP009780.1\|WP_002231208.1\|1125298_1125346_-\|his-operon-leader-peptide	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_011192126.1\|1133005_1134397_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.10909e-45
NZ_CP009780.1\|WP_011192127.1\|1135678_1137109_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP009780.1\|WP_002216312.1\|1131454_1132546_+\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP009780.1\|WP_012413636.1\|1144985_1145408_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	1.71432e-55
NZ_CP009780.1\|WP_002211896.1\|1124116_1125016_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.63843e-161
NZ_CP009780.1\|WP_011192124.1\|1128620_1129616_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	2.16773e-72
NZ_CP009780.1\|WP_011192122.1\|1122781_1124113_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NZ_CP009780.1\|WP_012304241.1\|1137401_1138511_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.86643e-61
NZ_CP009780.1\|WP_012413635.1\|1129612_1131169_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP009780.1\|WP_032467070.1\|1139405_1142480_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	2.50527e-126
NZ_CP009780.1\|WP_002217522.1\|1138944_1139262_+\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	5.26004e-59
NZ_CP009780.1\|WP_011192131.1\|1146623_1147466_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.24466e-106
NZ_CP009780.1\|WP_002216393.1\|1145835_1146576_+\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.05065e-117
NZ_CP009780.1\|WP_002211919.1\|1149052_1150198_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	gnl\|CDD\|183033	PRK11197, lldD, L-lactate dehydrogenase; Provisional.	0
NZ_CP009780.1\|WP_002211911.1\|1143672_1144977_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17308e-74
NZ_CP009780.1\|WP_002211917.1\|1147497_1148775_+\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NZ_CP009780.1\|WP_157131899.1\|1127928_1128219_-\|hypothetical-protein	gnl\|CDD\|374732	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein. Tai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein. The effector is Tae4, pfam14113.	4.0065e-14
NZ_CP009780.1\|WP_002211898.1\|1125721_1126549_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.54107e-68

>NZ_CP009780.1|WP_011192126.1|1133005_1134397_+|APC-family-permease
MAHDATVAVGTNQTGTNNRVQLRKTLTLVQVVMMGLAYLQPMTIFDTFGIVSGLTDGHVATSYAIALIAVLFTAVSYGKLVKRFPSAGSAYTYAQKSISPNVGFMVGWSSLLDYLFMPMINILLAKIYLEAIFPGVPSWIFVGALVSLMTLFNLRGINIVANLNSVIVVVQVAIMVVFMGLLIHGVYQGEGAGTLVSARPFYSENAHLVPMITGATILCFSFLGFDGISSLSEETPNAGKVIPKAIFLTALIGGIIFIAVSYCLQLYFPNISRFTDPEASQPEIMLFVAGKFFQSVILCFSCVTVLASGMAAHAGVSRLLYVMGRDGVFPEKVFGYVHPKWRTPAINVLLVGGVALSAISFDLVTATALINFGALVAFTFVNLSVIAQFYVRERRNSTFKDHFNYLILPMIGAGTVGVLWVNLESSSMTLGLVWGAIGLSYMVWKTRAFRRALPQFTEEPAQL
>NZ_CP009780.1|WP_002216312.1|1131454_1132546_+|oxidoreductase
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>NZ_CP009780.1|WP_012413635.1|1129612_1131169_-|sugar-ABC-transporter-ATP-binding-protein
MSSIPPSRLEMRNISISFSGFHALQEVDFTLEGGSTHALIGANGAGKSTLMAILSGAHNHYRGEIFIDGQPIDIHSPRQARQHGIHVVQQEVDVALIPTLSVAENIMLDELADRGHLFNWPQLYRQAEALLEQLELKLNVRQRLESCTLAEKQQVLLARALSHQCRFLILDEPTAPLDQEESARLFRVVRRLQSEGIGIVFISHRIHELREVCDQLTVLRDGRRVSHDTMEGMSGEQIVEKMLGHTLEDIFPPRRAAVSSKTLLSKTRLSKTLLPKTLLSVSGLHDQYKLRDISLTLHQGEILGIADLAGAGKTELCKALFGDTPSTLERGELSGKAWRPRSPDRSVAQGLALVPEERRKEGIFIDEGIPMNLSVAADDSFSRWSLFSRRQELSWAKELIERLGIRTSSPQQKLARLSGGNQQKVAIGKWLRGDAQVLIFDEPTKGVDIKAKQDLFSLIDQLAQQGKGIIYASGEFSELVGLCDRICVLWDGRIVAELNAAEVDEETLLLFSTGGTPQ
>NZ_CP009780.1|WP_011192124.1|1128620_1129616_-|ABC-transporter-permease
MSKELPLPDVQSWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAMALALTYIQKR
>NZ_CP009780.1|WP_157131899.1|1127928_1128219_-|hypothetical-protein
MQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSAIKDKYTRHI
>NZ_CP009780.1|WP_011192123.1|1126855_1127512_-|hypothetical-protein
MSNYINIARRIAKIILSPDSAIGLMHGVLSVPKDLGYLVYGYLDTDSRYLRETEHIRMAKAIRYGILQNHNFVKTIETVLGIFNKYVPKEKQESIYSRSMFSLAGRTAANSYIFGKMASIIAQRTAFLVTLQGGAAGNILLIGGMAERSVYTSRSLQRKNPEIYYALYPRNYDLLYFLIEPALEPFVEALQVRRNHGDAAFNKIIDMVENELKTKRAA
>NZ_CP009780.1|WP_002211898.1|1125721_1126549_+|SDR-family-oxidoreductase
MKKVAIIGLGWLGMPLAQSLSRRGIDVVGSKTTPDGVDAARMSGINCYPLVLTPELICEPDDLAQLMAVDALVITLPASRTTAGGDHYFQAVQQVVDSALAFGVPRIIFTSSTSVYGETRGRIKESSPLQPVTVAGKTLMALEQWLHQLPHTSVDILRLAGLVGTDRHPGRFLAGKTGVKGGSQGVNLVHQEDVIAAIELLLNRPKGGHLYNLCAPIHPRKRDFYPACARALQLTPPEFAVEEQEGANREIDGSKICSELGFEYLYPDPSRMPLN
>NZ_CP009780.1|WP_002231208.1|1125298_1125346_-|his-operon-leader-peptide
MNRVQFNHHHHHHPD
>NZ_CP009780.1|WP_002211896.1|1124116_1125016_-|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESQELLSRCGIKINLQQQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGDDPRYFTLRRLDFGGCRLSLAAPLDAEYTGPQCLQDTRIATSYPHILKQYLDKQGVRFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMSVDKQQLIDRLMTRIQGVIQARESKYIMMHAPSERLDEIITLLPGAERPTILPLAGDKSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NZ_CP009780.1|WP_011192122.1|1122781_1124113_-|histidinol-dehydrogenase
MQPTNFNTLINWQQCSEEQQKALLSRPAINASERITATVSDILDRVKAEGDSALRDFSQRFDHVQVADIRITASEIAAASARLSDDVKHAMAQAVRNIEIFHNAQKMPVVDVETQPGVRCQQITRPIASVGLYIPGGSAPLPSTVLMLGTPARIAGCQRVVLCSPPPIADEILYAAQLCGIQEVFQIGGAQAIAAMAFGSESVPKVHKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPAFIAADLLSQAEHGPDSQVILLTPDAAIAQAVAVEVEQQLALLSRADIARQALESSRLIVTNDLQQCIDISNAYGPEHLILQIRQPEEIIDQIDNAGSVFMGDWSPESAGDYASGTNHVLPTYGYTSTYSSLGLADFVKRMTVQQLTPQGLLGLASTIETLAQAEQLTAHKNAVTLRVTALNNALTAVNKE
>NZ_CP009780.1|WP_011192127.1|1135678_1137109_-|exodeoxyribonuclease-I
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQLYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNNSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
>NZ_CP009780.1|WP_012304241.1|1137401_1138511_+|NAD-dependent-epimerase/dehydratase-family-protein
MKKLLLTGATGFLGGAVLEKLLLASSDFNYLLLVRANTPEQGLMRIRENLEKFYLPNELINKININHVLLGDLAEPDSFINDVRIDDVTHVINCAAIASFGNNPLIWKVNVEGTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLLAEHCPTLPLVFARPSIVVGHTRLGCQPSSSIFWVFRMALMLRKFMCSLDDHIDVIPVDYCADALLYILEYPNLPDNIYHISAGEKGSVSFSEIDQAMSVAAKQKPVGVNYSQVEYTALVQMRNQLKGIFGPCNERLMLKAMRLYGSFAMLNVRFSNERLLSLGMPRTPRFTDYIARCVESSHGMTIQQQMAVDFK
>NZ_CP009780.1|WP_002217522.1|1138944_1139262_+|DUF496-family-protein
MDNASKPTFQDVLEFVRMFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEEVQAIIANMRGDYEDRVDDYIIKNADLSKERRELSKKLKAMGEVK
>NZ_CP009780.1|WP_032467070.1|1139405_1142480_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MAAETVGASDEKPRSASQAEQSTANAATRLASILTNDDSTKQASSIARGTAANAGNEALQKWFNQFGSAKVQLNLDEKLSLKGSQLDVLLPLTDSPDLLTFTQLGGRYIDDRVTLNVGLGQRHFFAQQMLGYNLFVDHDASYSHTRIGVGAEYGRDFINLAANGYVGVSGWKNSPDLDKYDEKVANGFDLRSEAYLPTLPQLGGKLIYEQYFGDEVGLFGVDNRQKNPLAVTLGVNYTPIPLFTVGVDHKMGRAGMNDTRFNLGFNYAFGTPLAHQLDSDAVAIKRSLMGSRYNLVDRNNQIVMKYRKQNRVTLELPARVSGAARQTMPLVANATAQQGIDRIEWEASALTLAGGKITGSGNNWQITLPSYLSGGEGNNTYRISAIAYDTLGNASPVAYSDLVVDSHGVNTNASGLTAAPEILPANASASSVIEFNIKDNANQPITGIADELAFSLELVELPEELAKAKARSVPLKTVSHTLTKITESAPGIYQATLTSGSKPQLINITAQINGVPLADVQTKVTLIADESTATLQTSSLQIITNGSLADDTDANQIRAVVVDAYGNKLSGVQVNFTVGNNAKITETTLSDKQGGVTAAITSTKAGTYTVTAELNGVTQQIDVNFIPDAGTATLDDSDEYKLQWVTNGQVADGESTNSVQLTVVDKFGNTVPGVDVAFTTDIGAIISEVTPTDANGVATAKIISSQAKSHTVKATLNRKEQTVEVNFIADTATAEITANNFTVEVDGQVAGSGTNQVQALVVDKKGNPVANMTVNFTATNGVVAETTSAKTDENGKVTTNLSMTNVGGTISTVTATMINSANVTSTQDKPVIFYPDFTKATLNTPANTYSGFNINSGFPTTGFKNTHFQLSPHGITGANSDYDWVSSHPNVSVSNTGAITLQDNPGGKVTITATWKHDSSKVFTYDFTLNYWVGLYSSTNLSWAQANASCINAGMRLPTNSEVSAGQDVRGVGSLFGEWGNLNAYPSFPTAQIIWTSVDTNDFHIDTGLTHSASNVTLAYMCIK
>NZ_CP009780.1|WP_002211911.1|1143672_1144977_+|MFS-transporter
MSNFNHYPDPTLNSAIKKAWYRLMPLMFIMYFVAFIDRINVGFAKDAMSADIGLSQSAFALGAGIFFAAYALFGIPANLMMNKLGAKVWLSSTTVVWGLLSAGTGLVSNEYQFVILRFLLGVAEAGFYPGILLLASIYFPNKIRASVIGIFVLGVPAALTLGSPISGALLDMQGFLGQPGWFWMFLLEGLPAVGLGIFAFFYLDDSPATARYLNPEEKQALLTQLSIEQSDTESSSVKAVLLSPKVWHLALIYGTIQVGVYGLIFFLPSQVATLLGSTLGFKESLVAAIPWAFSALGVYYIPRYADRKTHRRNPIATLNLVVAAIGLIISAYASPVLAIAALCLCAIGFLAVQPIFWTFPAQILSGKALAAGIGFCTTMGAFFSFLAPIIRVEAESQFNSPPAGLITLALFSLLSATLIFSLKFWPAKATAEVI
>NZ_CP009780.1|WP_012413636.1|1144985_1145408_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MSAPLPYIKPGERVIIYDGVCALCTGWVNFLIRHDRRHTVRLSAVQSKKGRALLEWAELPTDKINTLVLIENQQVYLRSEAIFRVIANLPWPWRILGVLRIFPRPLRDRCYDGIALNRYRLFGRYDAVRKLKADHERRFL
>NZ_CP009780.1|WP_002216393.1|1145835_1146576_+|SDR-family-oxidoreductase
MNLKGKKALVTAAGQGIGFNTATLFARKGAEVIASDINIAALSNIPGITAVSLDVTDTLAINDVAQAIGPIDVLFNCAGVVHSGDILTCSEQEWQFALDLNVTAMFHMIRAFLPGMIACQQGSIINMSSVASSIKGVPNRFAYSTSKAAVIGLTRSVAADYVTQGIRCNAICPGTVESPSLRQRIAVQAHAEGRSEADVFQAFAARQPIGRIGKAEEIAQLALYLASDASAYTTGTIHIIDGGWSN
>NZ_CP009780.1|WP_011192131.1|1146623_1147466_+|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGEERPALLDELGEIRDLSAHIEDISGKFLLPATLYKLRQLDSASLPLVRGEQRLGACVGHVGKFICVGLNYADHAAETGAEIPQEPVIFNKWTSAIIGPNDDIEIPRNSVKTDWEVELGVVIGTGGRYIGEANAMSHVAGYCVVNDISEREFQLEHGGTWDKGKGCDTFGPIGPWLVTRDEIPDPHQLGLWLDVDGRRYQNGSTRTMIFKIPQIISYLSRFMSLQSGDVISTGTPPGVGLGQKPPVYLHAGQIMRLGIEGLGEQCQKTIQA
>NZ_CP009780.1|WP_002211917.1|1147497_1148775_+|L-fuconate-dehydratase
MTIITALRTEDVRFPTSLELDGSDAMNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANMGKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELVRCIDFRYITDCITPEEALTLLQQRAHNKALRLEKLQDEGYPCYTTSAGWLGYPDDKLRRLCQDAVDAGFDYLKLKVGRDLEDDIRRVRITREVLGPDRKLMIDANQIWETNEAIPWVNQLAFANPWFIEEPTNPDDIEGHRRIRQGVAPVKVATGEMCQNRIMFKQFIMREAIDVVQIDACRLGGVNEVLAVMLMAAKYDLPVCPHAGGVGLCEYVQHLAMIDYLCIAGTDKGRVIEYVDHLHEHFVHPCVIKNAAYMPPEQPGFSIEMHQSSIEKYRFRV
>NZ_CP009780.1|WP_002211919.1|1149052_1150198_+|FMN-dependent-L-lactate-dehydrogenase-LldD
MIISASTDYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAAARRLLQAIAHPQWAWDVGLNGKPHDLGNISAYLGKPTTLEDYMGWIATNFDPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG

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Crispr_ID: NZ_CP009780_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_4

2127209-2127717

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR

8 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP009780_4

>merge|NZ_CP009780|4|2127209-2127717|CRISPRCasFinder,CRT,PILER-CR
TTTGATTATTGCCTGTGCGGCAGTGAACCCCAGCGTCGGGTCGGATACTTGCCACGTAACTTTCTAAGCTGCCTGTGCGGCAGTGAACTAGAGTGTTTTTTCTGACGATGTTCCTTGCTGTTTCTAAGCTGCCTGTGCGGCAGTGAACCGCATTTGCTCAACTTCTTTATTAGCATTAGCTTTCTAAGCTGCCTGTGCGGCAGTGAACGAATCAATATATCCAATTTTCCCGCCCCGTGTTTTCTAAGCTGCCTGTGCGGCAGTGAACTACTGCTCAGATATTTGGCGTGTCTTTTCTTGTTTCTAAGCTGCCTGTGCGGCAGTGAACACCACCTCGCAATTCTTCCGCCAAATGTTCCCTTTCTAAGCTGCCTGTGCGGCAGTGAACAGAAATGAGTAACGTTCAATTAGCTGCGGAATTTTTCTAAGCTGCCTGTGCGGCAGTGAACAAGAGCCGCCTTCTTGTCTTCCGCGCGTTGTTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009780|4|4|2127209-2127717|CRISPRCasFinder
TTTGATTATTGCCTGTGCGGCAGTGAAC	CCCAGCGTCGGGTCGGATACTTGCCACGTAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGAGTGTTTTTTCTGACGATGTTCCTTGCTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGCATTTGCTCAACTTCTTTATTAGCATTAGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAATCAATATATCCAATTTTCCCGCCCCGTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACTGCTCAGATATTTGGCGTGTCTTTTCTTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCACCTCGCAATTCTTCCGCCAAATGTTCCC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAAATGAGTAACGTTCAATTAGCTGCGGAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAGCCGCCTTCTTGTCTTCCGCGCGTTGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009780|4|2|2127209-2127717|CRT
TTTGATTATTGCCTGTGCGGCAGTGAAC	CCCAGCGTCGGGTCGGATACTTGCCACGTAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGAGTGTTTTTTCTGACGATGTTCCTTGCTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGCATTTGCTCAACTTCTTTATTAGCATTAGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAATCAATATATCCAATTTTCCCGCCCCGTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACTGCTCAGATATTTGGCGTGTCTTTTCTTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCACCTCGCAATTCTTCCGCCAAATGTTCCC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAAATGAGTAACGTTCAATTAGCTGCGGAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAGCCGCCTTCTTGTCTTCCGCGCGTTGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009780|4|2|2127269-2127717|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGAGTGTTTTTTCTGACGATGTTCCTTGCTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGCATTTGCTCAACTTCTTTATTAGCATTAGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAATCAATATATCCAATTTTCCCGCCCCGTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACTGCTCAGATATTTGGCGTGTCTTTTCTTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCACCTCGCAATTCTTCCGCCAAATGTTCCC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAAATGAGTAACGTTCAATTAGCTGCGGAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAGCCGCCTTCTTGTCTTCCGCGCGTTGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_011192631.1\|2132408_2133347_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NZ_CP009780.1\|WP_011192625.1\|2120132_2121083_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP009780.1\|WP_012413789.1\|2115529_2116888_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP009780.1\|WP_011192630.1\|2129857_2131132_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_002230953.1\|2131170_2132286_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_002216551.1\|2115196_2115406_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_011192632.1\|2133373_2134429_-\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NZ_CP009780.1\|WP_011192623.1\|2117448_2118468_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NZ_CP009780.1\|WP_011192624.1\|2119110_2120115_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP009780.1\|WP_011192633.1\|2135400_2136276_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009780.1\|WP_011192634.1\|2136384_2137671_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP009780.1\|WP_012413791.1\|2125868_2126849_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP009780.1\|WP_012413790.1\|2122581_2125872_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP009780.1\|WP_002210200.1\|2137942_2138983_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NZ_CP009780.1\|WP_011192629.1\|2128054_2129299_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NZ_CP009780.1\|WP_002210197.1\|2134575_2135400_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009780.1\|WP_011192622.1\|2116934_2117438_+\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NZ_CP009780.1\|WP_002211866.1\|2118545_2119100_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP009780.1\|WP_011192626.1\|2121079_2122426_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP009780.1\|WP_002210201.1\|2138999_2140388_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_011192631.1\|2132408_2133347_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	4.28073e-173
NZ_CP009780.1\|WP_011192625.1\|2120132_2121083_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	3.02239e-153
NZ_CP009780.1\|WP_012413789.1\|2115529_2116888_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.46743e-50
NZ_CP009780.1\|WP_011192632.1\|2133373_2134429_-\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	1.45937e-164
NZ_CP009780.1\|WP_002210197.1\|2134575_2135400_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NZ_CP009780.1\|WP_011192623.1\|2117448_2118468_+\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	1.53228e-143
NZ_CP009780.1\|WP_011192624.1\|2119110_2120115_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP009780.1\|WP_011192633.1\|2135400_2136276_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.71177e-57
NZ_CP009780.1\|WP_011192634.1\|2136384_2137671_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.65098e-50
NZ_CP009780.1\|WP_012413791.1\|2125868_2126849_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP009780.1\|WP_012413790.1\|2122581_2125872_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP009780.1\|WP_011192629.1\|2128054_2129299_+\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.06937e-32
NZ_CP009780.1\|WP_002210200.1\|2137942_2138983_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NZ_CP009780.1\|WP_011192622.1\|2116934_2117438_+\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	3.6884e-91
NZ_CP009780.1\|WP_002211866.1\|2118545_2119100_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NZ_CP009780.1\|WP_011192626.1\|2121079_2122426_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NZ_CP009780.1\|WP_002210201.1\|2138999_2140388_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0

>NZ_CP009780.1|WP_012413791.1|2125868_2126849_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILSRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRTKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NZ_CP009780.1|WP_012413790.1|2122581_2125872_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALDETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETALMSNLVKDGLDDYTNPLVALPPLAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLALMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDVNAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPRGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQASGQPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKNGSVLDAMAAVMRDSMLRLHQAHHQTHPSEKTVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKDPAIPVYCKPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAAGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLLSKKDGERWHYHPLLGVFGALD
>NZ_CP009780.1|WP_011192626.1|2121079_2122426_-|type-I-F-CRISPR-associated-protein-Csy1
MEEKGLTAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRRELIARYEVRNWLTDAANRAGQISLVTHALKFTHSDAKGSSVFNLPAAENDAIYLSSATLGQPAVDAVGNAAALDVAKLLQTEHNGDSLLACLNRADNSPLAALAENPQQLALWVEGFKQALVDKQLTSHKLAKQFYFPVGLDQYHLLSPLFSSSLAQAMHQRIAEARFSDQSKEAKVAHKAGKWHSEARVIYLKTAVQNIGGTKPQNISYLNSVRGGKVWLLPCGAPPWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQQYLLGVKPLSNTMDIRAVRLACSDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPNRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETWS
>NZ_CP009780.1|WP_011192625.1|2120132_2121083_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHHQQVHAYSSGRDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEVATRRLLCHLLPGFALLDRSELLAEHLNQLRQTNPQTEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NZ_CP009780.1|WP_011192624.1|2119110_2120115_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPVKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NZ_CP009780.1|WP_002211866.1|2118545_2119100_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NZ_CP009780.1|WP_011192623.1|2117448_2118468_+|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGIDCMLVGADTIEQINSAVTALRISLNAEENFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NZ_CP009780.1|WP_011192622.1|2116934_2117438_+|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHCPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NZ_CP009780.1|WP_012413789.1|2115529_2116888_+|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMTIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NZ_CP009780.1|WP_002216551.1|2115196_2115406_-|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK
>NZ_CP009780.1|WP_011192629.1|2128054_2129299_+|mechanosensitive-ion-channel
MQQRISQWLERLGMEFSNVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NZ_CP009780.1|WP_011192630.1|2129857_2131132_-|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSTTTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NZ_CP009780.1|WP_002230953.1|2131170_2132286_-|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHAGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NZ_CP009780.1|WP_011192631.1|2132408_2133347_-|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVSAGRVEARDSEHSTIVFFREQQGRWAPVENAPTFQLQDPFFTWIEDELIFGGVEINPHPDNPGQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTKNYTPIKIIAARDNFLPGAAKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NZ_CP009780.1|WP_011192632.1|2133373_2134429_-|glycosidase
MIRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NZ_CP009780.1|WP_002210197.1|2134575_2135400_-|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NZ_CP009780.1|WP_011192633.1|2135400_2136276_-|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFIWLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFTSSFLFAFGLQKLKYGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NZ_CP009780.1|WP_011192634.1|2136384_2137671_-|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTSTPDEALQQSIKEVNAILKP
>NZ_CP009780.1|WP_002210200.1|2137942_2138983_+|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NZ_CP009780.1|WP_002210201.1|2138999_2140388_+|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK

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Crispr_ID: NZ_CP009780_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_5

2319450-2319561

Orphan

Consensus_repeat	Method
ATTAATTAACCGTTAGGAATTTTCTTCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009780_5

>merge|NZ_CP009780|5|2319450-2319561|CRISPRCasFinder
ATTAATTAACCGTTAGGAATTTTCTTCAAATCATCTTCTCGCATTCCTAAATAATAGGTGTTTTTTTGAATTAATACCCGTCATTAATTAACCATTAGGAATTTTCTTCAAA

>NZ_CP009780|5|5|2319450-2319561|CRISPRCasFinder
ATTAATTAACCGTTAGGAATTTTCTTCAAA	TCATCTTCTCGCATTCCTAAATAATAGGTGTTTTTTTGAATTAATACCCGTC
ATTAATTAACCATTAGGAATTTTCTTCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_012413818.1\|2312140_2314813_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP009780.1\|WP_011192708.1\|2311547_2312156_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP009780.1\|WP_011192711.1\|2316614_2319272_-\|type-VI-secretion-system-ATPase-TssH	unknown	unknown	gnl\|CDD\|274528
NZ_CP009780.1\|WP_002215321.1\|2329045_2329528_+\|DcrB-related-protein	unknown	unknown	gnl\|CDD\|227722
NZ_CP009780.1\|WP_002211573.1\|2308573_2309059_-\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|225699
NZ_CP009780.1\|WP_011192719.1\|2331750_2332845_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|236754
NZ_CP009780.1\|WP_012413819.1\|2314940_2315702_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP009780.1\|WP_002211574.1\|2309391_2310894_-\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|226048
NZ_CP009780.1\|WP_002211572.1\|2307760_2308300_-\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|226052
NZ_CP009780.1\|WP_002211571.1\|2306407_2307757_-\|type-VI-secretion-system-baseplate-subunit-TssK	unknown	unknown	gnl\|CDD\|226053
NZ_CP009780.1\|WP_011192713.1\|2323059_2324253_+\|ImpA-family-type-VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|226046
NZ_CP009780.1\|WP_041175570.1\|2320055_2321936_+\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|226050
NZ_CP009780.1\|WP_011192712.1\|2321935_2322961_+\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|226051
NZ_CP009780.1\|WP_011192710.1\|2315858_2316404_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP009780.1\|WP_011192718.1\|2329900_2330503_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP009780.1\|WP_011192720.1\|2333173_2334193_+\|iron-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270261
NZ_CP009780.1\|WP_002211575.1\|2310917_2311442_-\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|226047
NZ_CP009780.1\|WP_011192714.1\|2324259_2325291_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP009780.1\|WP_011192715.1\|2325330_2326668_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|371506
NZ_CP009780.1\|WP_012413821.1\|2327366_2329049_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_012413818.1\|2312140_2314813_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP009780.1\|WP_011192708.1\|2311547_2312156_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	9.32653e-21
NZ_CP009780.1\|WP_011192711.1\|2316614_2319272_-\|type-VI-secretion-system-ATPase-TssH	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP009780.1\|WP_002215321.1\|2329045_2329528_+\|DcrB-related-protein	gnl\|CDD\|227722	COG5435, COG5435, Uncharacterized conserved protein [Function unknown].	1.8658e-59
NZ_CP009780.1\|WP_002211573.1\|2308573_2309059_-\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|225699	COG3157, Hcp, Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion, and vesicular transport].	1.41624e-58
NZ_CP009780.1\|WP_011192719.1\|2331750_2332845_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|236754	PRK10760, PRK10760, murein hydrolase B; Provisional.	0
NZ_CP009780.1\|WP_012413819.1\|2314940_2315702_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	2.91946e-83
NZ_CP009780.1\|WP_002211574.1\|2309391_2310894_-\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|226048	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP009780.1\|WP_002211572.1\|2307760_2308300_-\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|226052	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	1.44402e-54
NZ_CP009780.1\|WP_002211571.1\|2306407_2307757_-\|type-VI-secretion-system-baseplate-subunit-TssK	gnl\|CDD\|226053	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP009780.1\|WP_011192713.1\|2323059_2324253_+\|ImpA-family-type-VI-secretion-system-protein	gnl\|CDD\|226046	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	7.7898e-68
NZ_CP009780.1\|WP_041175570.1\|2320055_2321936_+\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|226050	COG3519, COG3519, Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP009780.1\|WP_011192712.1\|2321935_2322961_+\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|226051	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	2.16581e-133
NZ_CP009780.1\|WP_011192710.1\|2315858_2316404_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.76157e-21
NZ_CP009780.1\|WP_011192718.1\|2329900_2330503_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.11998e-11
NZ_CP009780.1\|WP_011192720.1\|2333173_2334193_+\|iron-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270261	cd13543, PBP2_Fbp, Substrate binding domain of ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic protein (Fbp) has high affinities for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.02656e-153
NZ_CP009780.1\|WP_002211575.1\|2310917_2311442_-\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|226047	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	5.26642e-84
NZ_CP009780.1\|WP_011192714.1\|2324259_2325291_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	6.3376e-12
NZ_CP009780.1\|WP_011192715.1\|2325330_2326668_+\|glycosyl-transferase	gnl\|CDD\|371506	pfam11397, GlcNAc, Glycosyltransferase (GlcNAc). GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1, a ubiquitous eukaryotic protein, in the cytoplasm.	1.44816e-71
NZ_CP009780.1\|WP_012413821.1\|2327366_2329049_+\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	3.0078e-34

>NZ_CP009780.1|WP_011192711.1|2316614_2319272_-|type-VI-secretion-system-ATPase-TssH
MAITRKYLFGKLDATLFKGIESATTICKLRGNPYVELVHWLNQLWHQEDNDLKQIIRYFAVDVDAFERELAQALAKLPVGATSISDFSYHIELATERAWIYASLECLDTRIRSGHLLLALLTTMELRRAFFAIAPSMEKIPLEHLSKDLNFITQASPEANEAASDGSPLYDGALPGEASNAIGAAKSGGTLAQYTTDLTALAREGKIDPVLGRNHEINTMVDILLRRRQNNPLLTGDAGVGKTAIVEGLALAIAAGSMPPALSQVSLLSLDIVALSAGASMKGEFETRLKSVLDEAIAAEKPVILFIDEVHTLIGAGGNAGTGDAANLLKPALARGQLRTIGATTWSEFKRHIEKDPALTRRFQVLQVDEPDENTAISMLRGLIPALEKHHGVWIMDEALQAAVRLSHRYIPARQLPDKAISLLDTACARIAVAQHSQPIELQHLTFQSETAQTELVSLEKARHFGKAQDARTEQLKTSIAEHGEAADKLDQRWQAERELVSAITTIRTALYDLVSQPEPDEEKRRAYQAQLVQLEAQLSQVRTSLPLVQTEVNAEVIASIVADWTGIPVGQMLKDDIRAVMELPQRLEARVIGQPHALMQLGENIMTARAGLSDPRKPLGVFMLVGPSGVGKTETALAIAESMYGGEQNMITINMSEYQESHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEIEKAHSDVHELFFQVFDKGQMEDGEGRFIDFKNTILLLTSNVGSELLSNLLADPDTAPDQDGILTALQPELLKVFPAAFLGRVTVIPYLPLQQDALQHIVRLHLDRIGARLYSQHQLTLKYSDEVVDDVVSRCAVSETGARMLIRYIEQNITPKIGKYILGDSDVKPEQIIFVHKNENGFVIALQ
>NZ_CP009780.1|WP_011192710.1|2315858_2316404_-|type-1-fimbrial-protein
MRKLNLAVCAVALSVISATSYAAAGGTVTFNGKLIADTCQVDTASENITVTLPTLSIQSLAVAEAQDGSKDFEIKVLDCPATLTQVGAHFNAIDSSGVNPATGNLVNKAPTDAAGNVEVRLYNVDDSSQIRVGSTGNMVNIVYVGATPGTANLTYAGGYYATDATTPGEVNAKVEYVLAYN
>NZ_CP009780.1|WP_012413819.1|2314940_2315702_-|fimbria/pilus-periplasmic-chaperone
MFSKIVILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLVDDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEELSFSQGQGVLVSKKK
>NZ_CP009780.1|WP_012413818.1|2312140_2314813_-|fimbrial-biogenesis-outer-membrane-usher-protein
MNRTDIACYIENNIGKLNYLPYKASLSVAVIFIGSVLLVTKSISAVPMSQDTNESAAVIPVEFNADFIHGGGVDVMRFMHENPVAPGVYDVTVIINGKNRGKHRIRFELSEGESTAEPCFTLEQLDSIGLKIETSDTDLLVNGKAAPKDQCYNLRALIKDSHVNYNSGDLELSLTVPQFNLVHHPRGYIDSSLWDAGGTVGFLDYNSNVYSIFNGRSSSDVGSDNSNSYNSNIGLSAGINLGEWRFRKRLNTTWSNSSGMHTQNLYGYAATDITALKSQLTIGDTNTQGSLFDSYALRGVLLASDTRMLPEGIRNYSPIVRGIAETNARVTVTQRGQIIYETVVTPGAFELTDIGTMSYGGDLQMTITESDGRTRIQRIPFSAPPMLLYQGVSRFDFSAGQLNDSSINHNPAIVQGAYHYGLGNTYTLYGGAQVAENYRSVAIGNAFNTPLGGVSMDITHAKSELAGDRRSSGNSYKIDYSKYVGETDTNLTLAAYRYSSGGYYSFREASLDRYGNSNGIDEIDFRTRNRLSLSVSQRVADNMSVNLNSSLYSYWGNQDASQQYSVGFNHSLRFFSYTVSAIRTSNSSNSSNGDNDREYENSYMLAVSIPIGGSGKNKPLFSSLSTMVSHSEAGDTQLQLTTSGSRGDQNELTYGIGTSYGNRNDASSEQSVIGNMGYQSSVGQLGMTASANNNASRQLSVSASGSLVAHQGGVIAGPRLGDAPFAIINAQGAGGAKVFNGRGAKIDSNGYALVPSLTPYRENTIAIDYKDLPETVDILENHKVVVPRMGAMIPVKMKTMTGNPMMLIVRDENKEFLPIGTDLLDADGVSQSIVGQGGMAFIRGWDPVSQPITATLNGGIDKCVIKPDAKIDTATKTVQIIQLEVICLRR
>NZ_CP009780.1|WP_011192708.1|2311547_2312156_-|type-1-fimbrial-protein
MSSSLKNKVAQKPIALLLLLTAVFIAQSQPAQAASSCAGTADCHIQVSFGGEYVEDTCEVSINGASSAESVSLPTLSTSKLNIDGAEAGNQAFQIALKLCPANRSVDLRFTAADSSRNPDVVTGNLQNELGDDYSLSVQVRLSKATGQQMFVGREDSVQEYIIPATGEDITHYFLAGYYAKGTNAVTPGQVKATAGIELVYK
>NZ_CP009780.1|WP_002211575.1|2310917_2311442_-|type-VI-secretion-system-contractile-sheath-small-subunit
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTPQ
>NZ_CP009780.1|WP_002211574.1|2309391_2310894_-|type-VI-secretion-system-contractile-sheath-large-subunit
MSTQDAKTKQATVASATEYSDFNTLLTKEFKAKSEQTIAAVEGAVKTLAEQALANSVTVSDDAYKSIASIIAEIDRKLSDQINLILHHQEFQSLESAWRGLHYLVNNTETDEKLRLRFLDISKDELRRNMKRYKGVAWDQSPLFKKIYEEEYGQLGGEPYGCLVADYYFDHTAPDVDLLASIGKVAASAHVPFITGAAPSVLQMESWQELSNPRDLTKIFTQNLEYAAWNSLRQSEDSRYIGLAMPRFLSRLPYGINTNPVDAFHFEETTDGADHSKYVWSNAAYAMAVNINRSFKEYGWCTLIRGVESGGVVEGLPCHTFPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDSDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKERDEMQRWLNDWVMNYVDGDPANSSLETKARRPLAAAEVIVEEVEGNPGYYQAKFFLRPHFQLEGLTVSLRMVAKLPSLKDVA
>NZ_CP009780.1|WP_002211573.1|2308573_2309059_-|type-VI-secretion-system-tube-protein-Hcp
MAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKASVSDFCFAHYIDKASPNLLSYCLLGKHIKNVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQNAEGHKSGVISANYDVKANMHS
>NZ_CP009780.1|WP_002211572.1|2307760_2308300_-|type-VI-secretion-system-lipoprotein-TssJ
MNKSIRGVYRATQYLFLVLVTLLTIACSSKVQPEKAEKLTVEIATAADINPNDKGVANPLRIALYTLKSTDEFQSSDFFTITEENTPSLKEQMDNVFDRIMLPSETKKIELTLDAGVTAIGIVAAYREIEQAEWKAVIYPLPKKRVDPWYKKMWPGQDQQDPIMKVRVERLSISIKEMD
>NZ_CP009780.1|WP_002211571.1|2306407_2307757_-|type-VI-secretion-system-baseplate-subunit-TssK
MRTNKVVWSEGLFLRPQLFQQQERYLEYYAHKRAATITPFFWGFAQYEIDREALSYGKLVLRSGKGVLPDGTPFDIPGHAELPEPLTITPEHLGKLIYLAVPLRLDNSDETIFDEHDMSSLARFYAYEAALNDTNAIRQGPKPVQLSRLRLRLVSEGEMTESWIGLPLTKVRAIQPDGSVLLHTEDYIPPVTGYAASSLLSEWLTHLNGLVKMRAEMLANRLSNSDGKASASAEIVDYLLLQIFNKYEPILDHLRHIPELPPITLYQELAKFSGELSTFIRTKTRRPRPAPGYDHAKLYASIRPLVDEVHELLNQILVRAGQMIPLETKGNGVWSASVLPNELRSFSNLVLAVHAQLPMDVLQHQFSVQTKISAPQQLHELVRSHLPGLELQRLPVPPRQIPYSAGYVYFELIKNGPFWDKVSNAGAIALHVAGDFPALKMELWGIRDS
>NZ_CP009780.1|WP_041175570.1|2320055_2321936_+|type-VI-secretion-system-baseplate-subunit-TssF
MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSARTQIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHIAPGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVGDLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATIIRAGHGETAKDTVISDQPLSFEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILLDRLPQDLVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFAINKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYASTEVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQPSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQIDALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGIIMENYVARHAAINVFTETELNSMQRGRVGHWKARPGRRGVL
>NZ_CP009780.1|WP_011192712.1|2321935_2322961_+|type-VI-secretion-system-baseplate-subunit-TssG
MLPDESVHQEKHANLDAWYQESQPWNAGFISMMRANAARNPTLPAPGKAPLPEQEAFRIGQSAHMTFSPREISHAVMKDGKMDLQLFGLGIWGPNGAMPLQMTELAYTRAELHDHTMTDFVDLFHHRALSQLYRAWFVSQDTASLDRQSDEKFSFYVGSLAGLDPQELNDTELPVHARLASSAHLIREARNPEGLVGALQYYFDVPVRMVEYAEQWIFLEESDQTQLGDGAGAMLLGDGAILGNTVLDRQHKFQLILGPLSLQQYLRFSLWGQDLPVLREWVRNFVGFEYAWEVQLLLSADEVPMATLDGGHQLGYTSWLARSDTTLDVGGMSFEPEMHHD
>NZ_CP009780.1|WP_011192713.1|2323059_2324253_+|ImpA-family-type-VI-secretion-system-protein
MSEQSIAERAGYYQSMMQPIPGDFPCGKNLEYDPAFIMLQTKLQPKQAAEYGNFVEVAEPNNWTDIERKCLELLNNSRDIRLFIILMRCRMRQVGVGALQEGLEAILWCLDTWPDQLHPQLFDEGEFEPLMRGNAFAELEDIDGFIADFRNQQLPKAAGVQLSIKEFEKAHSVPREEGALDEGTLEAVKQEWQNRSDHTILSLQHAYALLQGLATRLNNSLGEDTPDFVRMTSVLRHFDAAITPIAPIVVPEPIETPDVVELYPVATAMLASTEMPVTAEVQTVAETQMAIPIEAPQQRQAVVTPSPPLQPLQLQSAQLQPVPIQSPPVPVQQQGIQNRADALARLIEVREWFTAMEPSSPVIALLAFSEKTIGKSFGELLQFIPQELISKLNEGQE
>NZ_CP009780.1|WP_011192714.1|2324259_2325291_+|fimbrial-protein
MTRKLFILVFGAAISGQVNANCTLHLVSNSESVAGVMPLTFPISSFTFTIDADAPNDSTVPILEKVAQPQGLAVIYHCTSVDRYGKNVGPILGQDLGNGLFATNIDGIAIKPAWNNGAAYGYFNSSGIMPAFEREGVPTEEGFWTYPGTSHFRFELYKIKDTLNLTDTNGERVLPGGTIAYTWATNNSLANYAQRLEIGEIKVISTPSCTFDGPQKVNFGLVTSSNLNNGGIERDLDFNITCKTDYGHYSATAAISTQTPSDDNNYIKVKDNQNQEDRLLIKISDTNGQQMKVNGSTTEQQVNIASGVPAGFRWKAKLEAAPAANKPAIGDFSAMAEIILQIK
>NZ_CP009780.1|WP_011192715.1|2325330_2326668_+|glycosyl-transferase
MQSVPSIFVSIASYRDPELIPTLHDMINTAERPENLNIAIFWQNDNDINTFLNQGMQLIERKTHQGYPLYQLEYNRARVSVLSVHYYESRGACWARHMAETLFQDEAFFLQIDSHCRFIPHWDHEMIAMLDSLRAESPKPILSSYPPAYEPGENEIRKDYVSRMIFNLFTQEGIVQMLSTTITETAPVRCGYLAGGFIFSDGSFAREVPNDPNIFFIGEEIAMAARAFTHGYDIYAPHKILLWHFYTRAEHSKVWSDHNNEAKETGAVDMAWWERDKIAKDRVCTLLDGDKDHRVLAPYTLGTQRSLSEFEYRLGINIKNRAVHPDAAGEKKVSFFTDLPTSHEDWLSSLISVNKKTLKVEKKEVDFTREDVEWWHIGVYNPQNVAVMVEKVDPQNLSKTVTPVDETTFELKLAFNTQTHPNAQTIRICPYMRTQGWGDVVEKPW
>NZ_CP009780.1|WP_012413821.1|2327366_2329049_+|OmpA-family-protein
MFKVKLNKTLSLLWLAAVGTLLVSVNFKGNALWNNVIFITFLALMVLAIWKHYALKPNPPQVPIPVPQETAEPVEQESTVILILGPYAEKWFSNPESPDSTRFSSHAVWILITNPAALQKRLTYIAEHHPSAQVLTFFPFLPDVYENAAVMMSKLTVWQNTFSTLSLRSPLPCVFAIYAQLSNERLSHNSDNAYWTGNINLANQQPIEITQALQSLSQRLELQDINHSGFATQRNVMAHNLFTWLNESGVTNLLQSIFSRTPLRLTDVILSDNGKGFIRHGAWSAWLEKKFGIIPSLASTLSLPPFPAVINDQKPAIKPRVKTPVIKPIPASRGWLWSVCFAAVLLASHMLNTLWQEKNRHAQFNQQMVPLDNINDFSAQYLARSITQLTDEGKTLTTCVNTFDVTRWGLSQCQTLLSQINRRIESYENIPVFSFAQKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMTLSEQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQDRTRMTEPKPL
>NZ_CP009780.1|WP_002215321.1|2329045_2329528_+|DcrB-related-protein
MNAIPSTYSIFEGTFLTPAPVLDRSVNILMFRDPDNHEYNIIINRTLLEEEDTSETFCEKEMDALRNKLPGFQVEGKLLKHEIGPAKLPVVQVANHYLQDGKKFRQVQSIMQLPYHSLTNTDGRSVLIFTLNTDGEFTEYQRKHYVQIINSFNPHVAVAN
>NZ_CP009780.1|WP_011192718.1|2329900_2330503_-|LuxR-family-transcriptional-regulator
MFSVAIKTRNAFYEFGLLSLLKKVLIKEDDMDYSIVPSHEKRASNNANVIFKDLMVIVNIYQENSFIQKNDSNNNKPMMTVNIPFNSSQLGLYDVISKIKKILNIARLNYNMMMKSDLQRRIGLKNYIQLSMTESKVVQLTGKGHSTTDISKILDRSEKTILTHRRNAIRKLGMFNRLEFYKYASLMRNYSNKDAVFICL
>NZ_CP009780.1|WP_011192719.1|2331750_2332845_-|lytic-murein-transglycosylase-B
MRYLAVILPLFTLLSACSSQPTPPVAATPSDSPVQGGFLLEPEHAGQLQNGDFAFNPDTTRFVDKMVREHGFDRQQLHDVLAQTQRLDWVIRLMDKQAPTSRPPSGPNGAWNRYRNKFITPDNVQNGVVFWNQYEGALQRAWEVYGVPPEIIVGIIGVETRWGRVMGKTRIIDALATLSFAYPRRATFFTGELETFLLMARAEGKDPLSLRGSYAGAMGYGQFMPSSFKRYAVDFDGNGHINLWDPVDAIGSVANYFKSHGWTKGAPVAVPANGQAPNLENGFKTRYPISTLAAAGLSPKGPLGDYQETSLLRFDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGEAVGRVRKGESMITQ
>NZ_CP009780.1|WP_011192720.1|2333173_2334193_+|iron-ABC-transporter-substrate-binding-protein
MKIPIPSIGHVALLASAILFASSANAASDEDGIIIYNAQHESFAKSWAEGFTKDTGIKVTLRNGKDSELGNQLIQEGSSSPADVFLTENSPAMVLVDNAKLFAPLDAATQAQVAKEYRPEDGRWTGIAARSTVFVYNPAKISESELPKSLMDLAKPEWKGRWAASPSGADFQAIVSAMLALKGEQATLEWLKAMKTNATAYKGNSTVMKAVNAGQIDGGVIYHYYPFVDQAKTGENSGNIKLHYFKNKDPGAFVSISGAGVLASSKHPQQAQKFVQWVTGKAGQDFLRESNSAFEYAVGVNAASNPKLVPLKDLDPPKVEVSKLNSKKVVELMTEAGLL

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Crispr_ID: NZ_CP009780_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_6

2402122-2402218

Orphan

Consensus_repeat	Method
ACTAATATCTCCGGCCATTTTCCACTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009780_6

>merge|NZ_CP009780|6|2402122-2402218|CRISPRCasFinder
ACTAATATCTCCGGCCATTTTCCACTGCCCGATAATTTGACACACCTCAATTTAGCCAATAATCAATTAACTAATATCTCCAGCCATTTTCCACTGC

>NZ_CP009780|6|6|2402122-2402218|CRISPRCasFinder
ACTAATATCTCCGGCCATTTTCCACTGC	CCGATAATTTGACACACCTCAATTTAGCCAATAATCAATTA
ACTAATATCTCCAGCCATTTTCCACTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_011192745.1\|2392718_2393810_-\|sulfate/thiosulfate-ABC-transporter-ATP-binding-protein-CysA	unknown	unknown	gnl\|CDD\|182778
NZ_CP009780.1\|WP_002208515.1\|2400081_2400552_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP009780.1\|WP_011192755.1\|2412213_2412921_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227186
NZ_CP009780.1\|WP_012413830.1\|2406987_2407401_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP009780.1\|WP_011192751.1\|2404936_2405836_-\|Dyp-type-peroxidase	unknown	unknown	gnl\|CDD\|225393
NZ_CP009780.1\|WP_002208510.1\|2393799_2394675_-\|sulfate/thiosulfate-ABC-transporter-permease-CysW	unknown	unknown	gnl\|CDD\|183225
NZ_CP009780.1\|WP_002208512.1\|2395507_2396545_-\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236775
NZ_CP009780.1\|WP_012413831.1\|2407900_2410180_+\|autotransporter-YapL	unknown	unknown	gnl\|CDD\|273608
NZ_CP009780.1\|WP_050881950.1\|2410671_2410866_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_011192754.1\|2411485_2412211_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_002231046.1\|2396877_2398410_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|179668
NZ_CP009780.1\|WP_002208516.1\|2400633_2401506_-\|N-acetylmannosamine-kinase	unknown	unknown	gnl\|CDD\|235338
NZ_CP009780.1\|WP_002208518.1\|2403945_2404839_+\|N-acetylneuraminate-lyase	unknown	unknown	gnl\|CDD\|188641
NZ_CP009780.1\|WP_011192747.1\|2399014_2399893_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP009780.1\|WP_011192753.1\|2410271_2410688_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_002208521.1\|2406013_2406625_-\|RpoE-regulated-lipoprotein	unknown	unknown	gnl\|CDD\|236742
NZ_CP009780.1\|WP_012413828.1\|2391654_2392548_-\|cysteine-synthase-CysM	unknown	unknown	gnl\|CDD\|236972
NZ_CP009780.1\|WP_012413827.1\|2390190_2391423_-\|EspK/GogB-family-type-III-secretion-system-effector	unknown	unknown	gnl\|CDD\|237954
NZ_CP009780.1\|WP_002208511.1\|2394674_2395508_-\|sulfate/thiosulfate-ABC-transporter-permease-CysT	unknown	unknown	gnl\|CDD\|182873
NZ_CP009780.1\|WP_071819112.1\|2403136_2403883_+\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|225555

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_011192745.1\|2392718_2393810_-\|sulfate/thiosulfate-ABC-transporter-ATP-binding-protein-CysA	gnl\|CDD\|182778	PRK10851, PRK10851, sulfate/thiosulfate ABC transporter ATP-binding protein CysA.	0
NZ_CP009780.1\|WP_002208515.1\|2400081_2400552_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	9.7844e-72
NZ_CP009780.1\|WP_011192755.1\|2412213_2412921_-\|hypothetical-protein	gnl\|CDD\|227186	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction only].	0.00622127
NZ_CP009780.1\|WP_012413830.1\|2406987_2407401_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	1.08373e-58
NZ_CP009780.1\|WP_011192751.1\|2404936_2405836_-\|Dyp-type-peroxidase	gnl\|CDD\|225393	COG2837, COG2837, Predicted iron-dependent peroxidase [Inorganic ion transport and metabolism].	3.36085e-125
NZ_CP009780.1\|WP_002208510.1\|2393799_2394675_-\|sulfate/thiosulfate-ABC-transporter-permease-CysW	gnl\|CDD\|183225	PRK11602, cysW, sulfate/thiosulfate ABC transporter permease CysW.	0
NZ_CP009780.1\|WP_002208512.1\|2395507_2396545_-\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236775	PRK10852, PRK10852, thiosulfate ABC transporter substrate-binding protein CysP.	0
NZ_CP009780.1\|WP_012413831.1\|2407900_2410180_+\|autotransporter-YapL	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.12833e-75
NZ_CP009780.1\|WP_002231046.1\|2396877_2398410_-\|MFS-transporter	gnl\|CDD\|179668	PRK03893, PRK03893, putative sialic acid transporter; Provisional.	0
NZ_CP009780.1\|WP_002208516.1\|2400633_2401506_-\|N-acetylmannosamine-kinase	gnl\|CDD\|235338	PRK05082, PRK05082, N-acetylmannosamine kinase; Provisional.	2.48646e-166
NZ_CP009780.1\|WP_002208518.1\|2403945_2404839_+\|N-acetylneuraminate-lyase	gnl\|CDD\|188641	cd00954, NAL, N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL). N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.	7.97018e-118
NZ_CP009780.1\|WP_011192747.1\|2399014_2399893_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.00834e-86
NZ_CP009780.1\|WP_002208521.1\|2406013_2406625_-\|RpoE-regulated-lipoprotein	gnl\|CDD\|236742	PRK10718, PRK10718, RpoE-regulated lipoprotein; Provisional.	1.28362e-124
NZ_CP009780.1\|WP_012413828.1\|2391654_2392548_-\|cysteine-synthase-CysM	gnl\|CDD\|236972	PRK11761, cysM, cysteine synthase CysM.	0
NZ_CP009780.1\|WP_012413827.1\|2390190_2391423_-\|EspK/GogB-family-type-III-secretion-system-effector	gnl\|CDD\|237954	PRK15386, PRK15386, type III secretion effector GogB.	0
NZ_CP009780.1\|WP_002208511.1\|2394674_2395508_-\|sulfate/thiosulfate-ABC-transporter-permease-CysT	gnl\|CDD\|182873	PRK10971, PRK10971, sulfate/thiosulfate ABC transporter permease CysT.	0
NZ_CP009780.1\|WP_071819112.1\|2403136_2403883_+\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|225555	COG3010, NanE, Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism].	1.33891e-123

>NZ_CP009780.1|WP_002208516.1|2400633_2401506_-|N-acetylmannosamine-kinase
MGKGLALDIGGTKIAAAVVTESGMLIGRQQIATPRGGAGQLAAALETLIAPYRHQVDFIAVASTGIISGGRLTALNPANLGGLADFPLYDCIRSISDLPCVLLNDGQAAAWAEYQALGDKNDNMMFVTVSTGVGGGIILNKKLLVGQRGLAGHIGHTLSDPHGVLCGCGRRGCVESVASGTAIGAETLGWKQPVSAATVFDMAQQGDAQAGKVINRSAAAIAQMLADMKMALDLEVVILGGSVGLAVGYLERVVAAQKTLPGIYRVPVQEAHHRQDSGLLGAALWARTSL
>NZ_CP009780.1|WP_002208515.1|2400081_2400552_-|YhcH/YjgK/YiaL-family-protein
MISGSLAQPAFFSGLPERLQWVLAYLADMPLAQLSCGRHEIDGELMFMNVMAFDTQPAESKKAELHRTYADVQLLISGIEGIEYSTLTPTEHLEPYHPDDDYQLIADIPDKSQLRMLPGMFAVFLPGEPHKPGCQIAGSGAIKKVVVKVHYSLLNS
>NZ_CP009780.1|WP_011192747.1|2399014_2399893_-|MurR/RpiR-family-transcriptional-regulator
MKTGAPRFKPGKILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTLGYKGFQDFKMDLAIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETLNLLSIESVEQVVKLLRPADRICIFGVGSSGITAEDAKGKLMRIGLRVDAATNNHFMYMQASLMNPGDVAIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLINGNRQGQLQGDSIGTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQNG
>NZ_CP009780.1|WP_002231046.1|2396877_2398410_-|MFS-transporter
MSISVGPSREDKPLSGGAKPPRWYKQLTPAQWKAFVAAWIGYALDGFDFVLITLVLTDIKQEFGLTLIQATSLISAAFISRWFGGLVLGAMGDRYGRKLAMITSIVLFSFGTLACGLAPGYTTLFIARLIIGIGMAGEYGSSSTYVMESWPKNMRNKASGFLISGFSIGAVLAAQAYSYVVPAFGWRMLFYIGLLPIIFALWLRKNLPEAEDWEKAQSKQKKGKQVTDRNMVDILYRSHLSYLNIGLTIFAAVSLYLCFTGMVSTLLVVVLGILCAAIFIYFMVQTSGDRWPTGVMLMVVVFCAFLYSWPIQALLPTYLKMDLGYDPHTVGNILFFSGFGAAVGCCVGGFLGDWLGTRKAYVTSLLISQLLIIPLFAIQGSSILFLGGLLFLQQMLGQGIAGLLPKLLGGYFDTEQRAAGLGFTYNVGALGGALAPILGASIAQHLSLGTALGSLSFSLTFVVILLIGFDMPSRVQRWVRPSGLRMVDAIDGKPFSGAITAQHARVVTQK
>NZ_CP009780.1|WP_002208512.1|2395507_2396545_-|sulfate-ABC-transporter-substrate-binding-protein
MKQNSVKKNARNGLTHIALFSALILSGVTASATELLNSSYDVSRELFTALNPGFQAQWEQQNPGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQITDVQILHDRGNLIPADWQARLPNNSSPFYSTMAFLVRKGNPKNIRNWDDLVREDVKLVFPNPKTSGNGRYTYLAAWGATQLADGGDEAKTRDWMKRFLKNVEVFDTGGRGATTTFVERGLGDVLISFESEVNNIRKEYGSDQYEVIVPPVDILAEFPVAWVDKNVEKNGTEKAAKAYLNYLYSPPAQQVITRFNYRVYDKAAMEAAKSQFPDTKLFRVEDQFGSWPQVMSTHFTTGGVLDKLLAEGHQ
>NZ_CP009780.1|WP_002208511.1|2394674_2395508_-|sulfate/thiosulfate-ABC-transporter-permease-CysT
MLSASSKRVLPGFTLSLGSSLLYTCLILLLPLSALVMQVAQMSWAQYWEVITNPQVVAAYKVTLLAAGVASVFNAVFGMLMAWILTRYQFPGRSILDGLMDLPFALPTAVAGLTLATLFSTTGWYGAWLNEFGIKVSFTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGASRWQSFRLVVMPELAPALLAGTALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFIRLQEFDYPAASAIASVILAVSLALLFSINTLQSRFGRRIGGH
>NZ_CP009780.1|WP_002208510.1|2393799_2394675_-|sulfate/thiosulfate-ABC-transporter-permease-CysW
MVDVSEFNGVARPPINWGKWTLIVIGAAFSFLLLVIPMVWIFITAFSKGIAVVGQNLLNPDMLHAIWLTVLVALITVPVNLVFGVVLAWLVTRFVFPGRQLLMTLIDIPFAVSPVVAGLMYLLFYGSNGVVGGWLDAHDIQLMFSWPGMVLVTIFVTCPFVVRELVPVMMSQGSQEDEAAVLLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETYTLPLQVELLHQDYNTAGAFTAAALLTLMAIVTLFLKSGLQWRLARQVVRLEQEQKHEH
>NZ_CP009780.1|WP_011192745.1|2392718_2393810_-|sulfate/thiosulfate-ABC-transporter-ATP-binding-protein-CysA
MSIEINNISKYFGRTKVLNDITLDIPSGQMVALLGPSGSGKTTLLRIIAGLENQNAGRLSFHGTDVSRLHARDRRVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKQKVGQLLEMVQLGHLAERFPSQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQVGTPDEVWREPATRFVLEFLGEVNRLSGEIRGSQLFIGAHHWPLDLAPMHQGSVDLFLRPWEMEVSTQSSDRCPLPVQVLEVSPRGHFWQLTVQPIGWHQDPISVVLPEGNIDAPVRGNRYYVGGLNARLYSGNQLLQPIALAQSA
>NZ_CP009780.1|WP_012413828.1|2391654_2392548_-|cysteine-synthase-CysM
MTTLEHCIGHTPLVKLQRLSQGLNAEIWVKLEGNNPAGSVKDRAALAMIQQAELRGDIAPGDVLIEATSGNTGIALAMIAAMKGYHLKLLMPENMSQERQAAMRAYGAELILVSREQGMEGARDLALTMQENGEGNVLDQFNNTDNPYAHFTGTGPEIWQQTAGKVSHFVSSMGTTGTITGVSQYLKSQNPQVKVIGLQPAEGSSIPGIRRWSAEYIPGIFRPELVDQVLDITQSVAEQTMRRLAKEEGIFCGVSSGGAVAGALRIAVDNPDAVIVAIICDRGDRYLSTGVFLSKGG
>NZ_CP009780.1|WP_012413827.1|2390190_2391423_-|EspK/GogB-family-type-III-secretion-system-effector
MKIVNFISAQNRVEIEFLSTENEKNKEALNSVNKWENDAPFGENRTNAANEIRDVIERNAPILRLSRLNISSLPDVLPHSLIEIEIYYCDELSTLPDSFPSELTKLKISHCPEISSLYKNAPKRLTKLEIISCPKISNAIIPLPESLQYIKLDIDSKERLSLSFDKFPKNLRGINLSDSFLIEKSKFKDREIRLNGLVPSVALEFKLGDILYGIAQCQHEVMQQLINFNDFSNKDICSQTTITDAVWEHRNYFSRDKYRDDATIKEMLNDADRGIKFKDFLEKHEKYNILSRSGIKSYRPHKNEEDICLSRTSKAGLEFQIMERQERVFFCIDNLNNCIPEIAQKKPDYGTYITASELRWLYRRKDHPNVKNNVQFCLEGAFISQEEVFSLPGWETYFPKRKSNFIPSYV
>NZ_CP009780.1|WP_071819112.1|2403136_2403883_+|N-acetylmannosamine-6-phosphate-2-epimerase
MELNFIYNFTSELKTVSNLSNLRHKLQNGLIASCQPVPGSAMDTPEIVAAMACAALAGGAVGLRIEGISNIQAVRRATDAPIIGIIKRDLPDSEVRITPWLEDIDALSAAGADIIAFDVTCRERPVSVADLYQRARATGCLTMADASNIDDGLLAHHLGIDFIGTTLSGYTQAIVPTEPDLALVTQLAQAGCRVIAEGRYHSPALAAAAISAGAYAVTVGSAITRIEHICGWFCDAIKQCETEKLTEY
>NZ_CP009780.1|WP_002208518.1|2403945_2404839_+|N-acetylneuraminate-lyase
MKKLTGLIAAPHTPFDEQGEVNYPVIDQIAEHLINDGVKGVYVCGTTGEGIHCSVDERKKIAERWVNAAQGKLSITLHTGALSIKDAVDLSRHAETLDIFATSAIGPCFFKPGNLDDLIAYCQAIAAAAPSKGFYYYHSGMSGVNLDMEQFLIKAESKIPNLSGIKFNNADLYEFQRCLRVSGGKFDIPFGVDEHLPGGLAVGAIGAVGSTYNYAAPLFHKIIADFNAGDQVAVQRGMDHVIALIRVLVEFGGVAAGKAAMQLHGIDAGNPRLPLRALTKEQKQTVVNRMRDAITLQ
>NZ_CP009780.1|WP_011192751.1|2404936_2405836_-|Dyp-type-peroxidase
MTQVQSGILLEHCRFAIFMEAKVQGELDAIRLGCKKFCQSLQELQQQFPDEHLGAVIAFGSNVWHDLSNGQGAKELKPFVPLGKGLAPATQRDLLIHIQSLRQDINFTLAQAAVAAFGSAIAVEEETHGFRWVEERDFTGFIDGTENPQGDKRPEVAVIADGEEDAGGSYVLVQRYEHNLNKWQRIPENEQEKIIGRTKLDSQELPSDQRPETSHVSRVDLKENGKGLKILRQSLPYGLASGKHGLYFIAYCARLHNIEQQLLSMFGDIDGKHDQLLRFSKPVTGSYYFAPSLTALLSL
>NZ_CP009780.1|WP_002208521.1|2406013_2406625_-|RpoE-regulated-lipoprotein
MNIRPRLSGVRLLLLSAPLLLAGCSTVSGFSWSSLSPLNWFSGSRSMQVTEQGVGGITASTLLTESDINAGLQGDYRLRSGMATNDGKLVSFYQALKEDQIKLVISGQPKGQVERIDVMDKGIPSQWGVTIGTPFSDLYKKAFGACHKGRGDDVNQVECVAPESKHVSYLFNGNWHGPEELMPSDDALQSWTVSKIIWRAKSE
>NZ_CP009780.1|WP_012413830.1|2406987_2407401_+|YgiW/YdeI-family-stress-tolerance-OB-fold-protein
MKKLTLAATLIMLCGTPVLAQSASNTTQGGFDGPATKQTQPATQGGFTGPSASSTTVDKVKTMRDDARVTLQGNIEARLGHDTYTFRDSTGTITVEIDDKRWRGQTITPQDKVQIEGKVDKDWNSVEIDVKNITKIK
>NZ_CP009780.1|WP_012413831.1|2407900_2410180_+|autotransporter-YapL
MNTNSKKTYLSIAISSILYASTAMNANADSCTDYTVTDICEQSKYGAGEFHNIKLGDGVTAGSEDHHFVFNGEGYELYNSNANFSAQIASGTIRYTEVNNSHFTVNAHHFPDDTIYAGRAENTTLNDSLMWVATSADQTLAKGNSMVVVSTQMAMVDQIFVTTLNDGSLPFDPVITNSRYEDTSYEMLWGMKNEAKGWDTKATSHDSVFVDASKQSIEANGHSIGATFYDRATQVVKAGGESQDTHLFDHSYSWVYAEAKLTGLTEVNDAATVYLNAAATQGAYAENVVLNGEDTTLMVRASLDNNAYATVDNLILNGGEVVFQQSSGDQYASLNIGTLSGSGSFLFNTSIAEGKGNFVTIANASGEHKVIVNDSGHEITSPDMTTLDLIHDLSGDATFTLASISGANIIEVDGGTYVYSLNTWDNSARAGGNLWYLGSGLNTGTELEPEPEEKTTPSTDAVLSMASSNQFIFDGEMQNLRFRKGDLNNNKGDGASVWGRYLTNNTRVNAAHDAAYRLQQDGFEIGADKVLEMSSGQLVLGGFTSYSNNRVKHARGGNSTVDSYSLGAYGTYFDNSGYYVDAVVKANRFKNSLNAHMTNGGSVQSDYNQNAIGGSLEAGYHYSLSNNWFVEPYVRTSYYTAQDKDIALNNGMTANIDNNRSAKGEIGTHLGTKIDLNNGAIIRPYAKVAIEREFIKSNTVTINQVNDFNNDLSGHTAKYGLGMDINLTKQTSVYAEANYRNGTHVESPIMANIGFRINF
>NZ_CP009780.1|WP_011192753.1|2410271_2410688_-|hypothetical-protein
MNLKSKIFIFWGMMDLYYIVRYIWVSLSVGKIPFVSDINNFLPMDFSDLLIYRVIVIGSMLTTISVLFTAFFFLKNKKIAIMAAFIQEPFRLIFGVYSISLIPTVINALGMTILVTNLFFLFISEGLKIYTLLIARKM
>NZ_CP009780.1|WP_050881950.1|2410671_2410866_-|hypothetical-protein
MSTQFFVSDPLDKSTDTGNYQPQTSEYGPGHWVVIDEGDAFWPVSGKSWHGMPVTLDNIYELKK
>NZ_CP009780.1|WP_011192754.1|2411485_2412211_-|hypothetical-protein
MLITWVSRKGLKRFKNNDAVALYENNKIFIAIAVDAAEKNNTSHESDLAKYWANAVIAECNFRIDSTSMLKIDINEIVAILREKQKNLRHNYLHETASYAVVFLDKELQVVTTLHCGDCLFGSQKNTPSINWLIKPHNTHQQQMQLLAAGCQCHSHAYSRFTLTRYLNARRFYTPELNEFPITDMEQLILSTDGYWAEHIGERIAWEKLEDDASVLRINLSEEKTLDIQSDCENFVTYTIY
>NZ_CP009780.1|WP_011192755.1|2412213_2412921_-|hypothetical-protein
MINREIQLDMLQRVAEALGPDLRKKMTFVGGCTTGLLVTDEFTREQIRHTDDVDLIMHVMSYTSYSALQQELQAHGFKIEVPDDDGAPICAMKLGDLRVDFMPDDENILGFTNRWYRKAMETSTYFNLAPELSINLISPVYFIATKLEAYNGRGKGDPLESRDIEDILNLVDGRPELVNEISTAENDLKIYISQQIEVLIKLSDFDYAIQSHTYGDKAREDEIYERLEKIIEIGK

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Crispr_ID: NZ_CP009780_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_7

3212072-3212151

Orphan

Consensus_repeat	Method
CAGCCGCAGCCACGCTCAGCCATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009780_7

>merge|NZ_CP009780|7|3212072-3212151|CRISPRCasFinder
CAGCCGCAGCCACGCTCAGCCATTCGACACCCATATCAGAATGACTGCGGCAACGCAGCCGCAGCCACGCTCAGCCATTC

>NZ_CP009780|7|7|3212072-3212151|CRISPRCasFinder
CAGCCGCAGCCACGCTCAGCCATTC	GACACCCATATCAGAATGACTGCGGCAACG
CAGCCGCAGCCACGCTCAGCCATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_011193099.1\|3201224_3202655_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	unknown	unknown	gnl\|CDD\|183085
NZ_CP009780.1\|WP_002210359.1\|3215837_3217676_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP009780.1\|WP_012414004.1\|3218117_3218948_+\|abortive-infection-family-protein	unknown	unknown	gnl\|CDD\|379577
NZ_CP009780.1\|WP_011193101.1\|3208225_3209464_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP009780.1\|WP_012303700.1\|3221105_3221654_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_002212195.1\|3205816_3207124_-\|inorganic-triphosphatase	unknown	unknown	gnl\|CDD\|225569
NZ_CP009780.1\|WP_012414007.1\|3221619_3222351_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_002212192.1\|3199937_3201188_-\|L-methionine/branched-chain-amino-acid-transporter	unknown	unknown	gnl\|CDD\|236823
NZ_CP009780.1\|WP_002210358.1\|3213931_3215680_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP009780.1\|WP_012414005.1\|3219080_3219278_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_049772382.1\|3222340_3222748_-\|tail-assembly-chaperone	unknown	unknown	gnl\|CDD\|367075
NZ_CP009780.1\|WP_011193100.1\|3207427_3208048_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|182809
NZ_CP009780.1\|WP_002212198.1\|3209699_3210518_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP009780.1\|WP_002217581.1\|3211258_3211909_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NZ_CP009780.1\|WP_002212194.1\|3202789_3205645_-\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
NZ_CP009780.1\|WP_001144069.1\|3213580_3213796_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP009780.1\|WP_012414006.1\|3219453_3221109_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273730
NZ_CP009780.1\|WP_002212201.1\|3212154_3213168_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP009780.1\|WP_002212199.1\|3210791_3211151_-\|bifunctional-dihydroneopterin-aldolase/7,8-dihydroneopterin-epimerase	unknown	unknown	gnl\|CDD\|183219
NZ_CP009780.1\|WP_002212191.1\|3199331_3199613_+\|accessory-factor-UbiK-family-protein	unknown	unknown	gnl\|CDD\|225508

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_011193099.1\|3201224_3202655_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	gnl\|CDD\|183085	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE.	0
NZ_CP009780.1\|WP_002210359.1\|3215837_3217676_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP009780.1\|WP_012414004.1\|3218117_3218948_+\|abortive-infection-family-protein	gnl\|CDD\|379577	pfam14355, Abi_C, Abortive infection C-terminus. This domain is found at the C-terminus of the Lactococcus lactis abortive infection protein Abi-859. This protein confers bacteriophage resistance.	7.8969e-19
NZ_CP009780.1\|WP_011193101.1\|3208225_3209464_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP009780.1\|WP_002212195.1\|3205816_3207124_-\|inorganic-triphosphatase	gnl\|CDD\|225569	COG3025, COG3025, Uncharacterized conserved protein [Function unknown].	0
NZ_CP009780.1\|WP_002212192.1\|3199937_3201188_-\|L-methionine/branched-chain-amino-acid-transporter	gnl\|CDD\|236823	PRK11021, PRK11021, putative transporter; Provisional.	0
NZ_CP009780.1\|WP_002210358.1\|3213931_3215680_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP009780.1\|WP_049772382.1\|3222340_3222748_-\|tail-assembly-chaperone	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	2.75054e-13
NZ_CP009780.1\|WP_011193100.1\|3207427_3208048_+\|SH3-domain-containing-protein	gnl\|CDD\|182809	PRK10884, PRK10884, SH3 domain-containing protein; Provisional.	6.8679e-147
NZ_CP009780.1\|WP_002212198.1\|3209699_3210518_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	5.08833e-116
NZ_CP009780.1\|WP_002217581.1\|3211258_3211909_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	6.06402e-111
NZ_CP009780.1\|WP_002212194.1\|3202789_3205645_-\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	0
NZ_CP009780.1\|WP_001144069.1\|3213580_3213796_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	8.25342e-17
NZ_CP009780.1\|WP_012414006.1\|3219453_3221109_-\|hypothetical-protein	gnl\|CDD\|273730	TIGR01646, conserved_hypothetical_protein, Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.	0.000112191
NZ_CP009780.1\|WP_002212201.1\|3212154_3213168_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP009780.1\|WP_002212199.1\|3210791_3211151_-\|bifunctional-dihydroneopterin-aldolase/7,8-dihydroneopterin-epimerase	gnl\|CDD\|183219	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase.	2.02028e-82
NZ_CP009780.1\|WP_002212191.1\|3199331_3199613_+\|accessory-factor-UbiK-family-protein	gnl\|CDD\|225508	COG2960, COG2960, Uncharacterized protein conserved in bacteria [Function unknown].	1.21559e-35

>NZ_CP009780.1|WP_002217581.1|3211258_3211909_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MSAIALGMIIFAYLCGSISSAILVCRVARLPDPRTHGSGNPGATNVLRIGGRTAAVAVLLFDILKGMLPVWIAYLLHIPPLYLGLTAIAACLGHIYPVFFHFKGGKGVATAFGAIAPIGWDLTGLMTGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKPQFTFPVAMLSCLILMRHHDNIQRLWRGKEGKIWDKLRKKKQKTPAEEAAELEEKED
>NZ_CP009780.1|WP_002212199.1|3210791_3211151_-|bifunctional-dihydroneopterin-aldolase/7,8-dihydroneopterin-epimerase
MDIVFIEELSVITTIGVYDWEQTIQQKLVFDIEMGWDNRKAAGSDDVNDCLSYADISEAVIQHVGSQRFALVERVAEEVAELLLRRFNSPWVRIKVSKPGAVAQAKNVGVIIERGQRLS
>NZ_CP009780.1|WP_002212198.1|3209699_3210518_-|undecaprenyl-diphosphate-phosphatase
MTDMYSLFVAFILGVVEGLTEFLPVSSTGHMIIVGELLGFTGDKAKTFEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNGHLTLGHILLAMIPAVILGLAFHDVIKALFDPKSVMYALVAGGVLLLAAEWLKPKNPKAVGLDDITYRQAFAIGCFQCLALWPGFSRSGATISGGMLVGVNRYAASEFSFILAVPMMIGASGLDLYKSLHFLTLGDLPMFAVGFITAFIVALIAIKTFLSLIKRISFVPFAIYRFIVAAVVYWVFM
>NZ_CP009780.1|WP_011193101.1|3208225_3209464_+|multifunctional-CCA-addition/repair-protein
MNIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVFLHPVSHEEYALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLENRVLRHVSDAFGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPERVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGIHTLMTLAIAAQLSPEVDIRFAALCHDLGKGLTPKEHWPHHHGHGPAGVKLVEQLCQRLRIPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFNAIDVWRKPERLEQMIMTSEADARGRTGFENNPYPQGDYLRAAFQIANGVSIQEVVASGLQGLAIRDELQRRRQQALAEWKQTQETPLI
>NZ_CP009780.1|WP_011193100.1|3207427_3208048_+|SH3-domain-containing-protein
MQKLRLICLTILSLSLSWGAQAEEKRYISDELDTYVHSGPGNQYRIVGTLKGGDEVTLISVDNGTNYGQIRDSKGKTTWIPLNQLSETPSLRVRVPDLEQQVKTLTDKLANIDNSWNQRTAEMQQKVAASDSVISELQKENESLKNQLIVAQKKVNAVNLQLDDKQRTIILQWFMYGGGVAGIGLLLGLVLPHLIPSRKKNNRWMN
>NZ_CP009780.1|WP_002212195.1|3205816_3207124_-|inorganic-triphosphatase
MTVEIELKFIATPAAIAALPEWIESQKNQHFPPQTLANIYFDTADKRLRQNDIGLRIRGYDGRYEMTVKTGGKVVGGLHQRPEYNVDIDSDQLDLARFPQDIWPEGWAVDLLQAELQPLFRTDFTREKWVITYGESEIELALDQGSISADTLSEPLSEIELELKQGTQGDLLALAAELAKMGGLRQSNLSKAARGYHLAQGNPPRELRPFLVFQPVAKSTVEQGMAGGLESILEHWQYHEELWLRGEPAAKTMIIDALAMVRQSLAIFGGLVPRKASTELRALLIALEPQLEPKSVDAALLCYSVDYLKCKLALTSWLITAGWRPFMDAKAQAKFDGSFKRFCDIMLSRSAADLKEAFGHNLDDDGYLAQLPRLNRQLIAFQLLSGFYPQSEWHPYIDAWFGLQQAIMARQGHWRDTARKEALSQAAFWLNGAVR
>NZ_CP009780.1|WP_002212194.1|3202789_3205645_-|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase
MLPLPSELQIQAQSIKQRFSELPAPPDLRDEDIAVLALSDFVSDMLLIHPQWLEELHQQPPQPQEWQYYSQWLSQALAGVQDEAALLTALRLFRRRVMVRIAWSQVLQTSGTAETLQQLSTLAESMIIAARDWLYQVCCRELGTPCNRQGVPQPLLILGMGKLGGGELNFSSDIDLIFAYPENGQTQGGRRELDNAQFFTRLGQRLIKALDQHTIDGFVYRVDMRLRPFGDSGPLVLSFAALEDYYQEQGRDWERYAMVKARLMGGADDPYSQELRQMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLKDNIKLGAGGIREIEFITQVFQLIRGGREPRLQERALLPTLQAVAELGLLPEQQVADLSGSYLFLRRLENLLQAIADEQTQTLPNDPLNQARLAWGMGYADWAAMSTALENHMQAVRVVFDDLIGDETPDIGEDPSHGLYKSLWQDVLEESDLAPLTPHLEEAARRQLLATISGFRHDVDKRTIGPRGREVLDQLMPRLFAEVCPRPDANVALSRLILLLLSIVTRTTYLELLVEYHAALKHVIRLCSASPMVASQLARYPLLLDELLDPQSLYQPLAPSAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQQLRIAAGDITEALPVMKVSDHLTYLAEAIIDAVIQQAWNQMVARYGQPSHLQQSEGRGFAVIGYGKLGGWELGYSSDLDLVFLLDCPLDVMTDGDRSIDGRQFYLRLAQRIMHLFSTRTSSGILYEVDARLRPSGEAGMLVSTIEAFADYQRNEAWTWEHQALVRARIVYGSPKLHQQFDAIRQQILCRHREDPQLQQEVREMREKMRNHLGSKQRDIFDIKADAGGITDIEFIAQYLVLRYAASEPRLTRWSDNVRIFESMAHYDIMSPEEAAALTRAYVTMRDEIHHLALQEQSSKVAADSFIAEREQVAASWHKWLAANDANVS
>NZ_CP009780.1|WP_011193099.1|3201224_3202655_-|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE
MKVTLPDFRRAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVDTIEERPGGAANVAMNIASLGAVARLVGLTGIDDAARALICKLSEVRVRCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFDGVDPTPIFERIQLALPQIGALVLSDYAKGALNSVQPMIQLARKANVPVLIDPKGSDFERYRGATLLTPNLSEFEAVVGRCKNEEELVNRGMQLVADFELSALLVTRSEQGMTLLQLGKPPLHLPTQAKEVFDVTGAGDTVIGVLAAALAAGNSLEESCFLANAAAGVVVGKLGTSTVSPIELENAIRGRAETGFGVMDEQQLKIAVAQARQRGEKVVMTNGIFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGEKRPVNPLEQRMVVLGALEAVDWVVPFEEDTPQRLIADILPDLLVKGGDYKPHEIAGSEEVWAAGGEVKVLNFEDGVSTTNIIQSIKNGRG
>NZ_CP009780.1|WP_002212192.1|3199937_3201188_-|L-methionine/branched-chain-amino-acid-transporter
MGGLKQELSLAQGVGLLSTSLLGTGVFAVPALAAMLAGHDSLWAWPVLIVLVFPIAIAFAALGRHFPSAGGAAHFVAIAFGPKLGKVTGWLFLSVIPVGLPAALQIAAGFWQAMFGWSDTGLLMVQLVTLLVIWLLGTRSAGSSANLQTVIALLVIALVAAIWWQGDIRLSQIPWPALQDVSPPNIFNALAVMFWCFVGLEAFAHLATEFRHPERDFPRALIVGLLVAGAVYWGCTVAVLHFQAYGESQAAAASLPGIVVQLFGEHALWIACIIGYLACFASVNIYTQSFARMVWSQSQVRPQSKLARLSAGQTPVNALTAVVGSCLVFALLIYWLALPLDLLIVYANGIFVLIYLLCMLAGIRLLSGRARVMSVIGSLLCCVLLVMIGWKSVYALLMFALLWMLMSKPKTQLTQP
>NZ_CP009780.1|WP_002212191.1|3199331_3199613_+|accessory-factor-UbiK-family-protein
MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRLILQSQLTRLDLVNREEFDVQTQVLLRTREKLALLEQRVGALEAKFNSAPADHGEKTGE
>NZ_CP009780.1|WP_002212201.1|3212154_3213168_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MRVLGIETSCDETGIAVYDDKAGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKEANLSAKDIDAVAYTAGPGLVGALLVGATIGRALAFAWGVPAVPVHHMEGHLLAPMLEENAPEFPFVALLVSGGHTQLISVTGIGEYLLLGESVDDAAGEAFDKTAKLLGLDYPGGPMLSRMAQQGTVGRFTFPRPMTDRPGLDFSFSGLKTFAANTIRANGDDDQTRADIARAFEDAVVDTLAIKSKRALDQTGFKRLVIAGGVSANQTLRLKLADMMQKRGGEVFYARPEFCTDNGAMIAYAGMVRLRSNLNSELSVSVRPRWPLSELPKV
>NZ_CP009780.1|WP_001144069.1|3213580_3213796_+|30S-ribosomal-protein-S21
MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY
>NZ_CP009780.1|WP_002210358.1|3213931_3215680_+|DNA-primase
MAGRIPRVFINDLLARTDIIDLIDARVKLKKQGKNYHACCPFHHEKTPSFTVNGEKQFYHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLVTNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRILGDGVPKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTMRILIGLLVQNPQLATLIPSLQGLEQAKLAGLPLFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDRTHGLNAEERKELWSLNLALARKK
>NZ_CP009780.1|WP_002210359.1|3215837_3217676_+|RNA-polymerase-sigma-factor-RpoD
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTATHVGSELSTEEMDDEDEDEDEDDDAEDDNSIDPELARQKFSDLREQYENARMEIKKNGRNHANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKNFVTLFSSNETSDTWFNAAVAMGKPWSEKLKDVSEDVQRSLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
>NZ_CP009780.1|WP_012414004.1|3218117_3218948_+|abortive-infection-family-protein
MDRKIPQPLIAIVAEHISSLETHASLDNLFMYADAPGEVPDGSKHVKALAWIRRINKECKDPLSILGKLIEGYMESSNPIATPSPYSDFLSEDEEPTFNQRVDEMLGKYGLFYIRGGFISSGVSNTSISLQEAIKGKNMPAIEAEFTRALEHIHKEPKESVSAACNILESVCKIYITDEGLEMPARQDLQGVWKVVRDNLGMNPQQIEDNDLKRILTGLFSIVDGIGAFRTHASTAHGAGRKSYNVKSRHARLAINSAHSLVLYIIESWEERKSSK
>NZ_CP009780.1|WP_012414005.1|3219080_3219278_-|hypothetical-protein
MTETALHRTRLHTLRYKVFSVLIFYKTIRQPAPWLGLCSILPTEKIEKNFSVFSFRISEWIARKY
>NZ_CP009780.1|WP_012414006.1|3219453_3221109_-|hypothetical-protein
MKPIRRLMLSGDTVPLVDATLVLELNACGRGFITAETTTDYTGKLVRLDAGYPELVLRWFTGYVERSQPAENGAQRLFVRELTGIFERMWPVSMQHPTLRQLADWLTDNSGLTFQLAASADYNDKPIPHFTHSGSGYQLLANIGNAFGIVDYVWYQLPDGAVYVGSWQHSLFAGKPIDIPSEFSTAAAAGNTMTVPMIQSVRPGVELNGQRLTTVRLNNDDLVLTWTPRNKTTGQPLQKTPIQRQIDNAYPELSAGLHLPKMARVEGPSEAVTCGDMADPFRPRYAVNLQLLDDDGQAAADTPVYPAVPLPLPMAGAESGMFQFPPAGTLVEVGFTGGRPDKPFVRQTLSQGNNLPTVQPGEQLQQQRDGVSQRVTVAGDWERKTDQVIREESMSRVITADDETRTLVARETTVQATDKTTVLGTATLLAGAIQQISEGDYSLATQASYMAKVGKTLTTDVGRDLIEKIGNIRSSIAAARQDVIAPVVWMGSQQINVMALMLDTLDVVKELAALTAAHTHTNTDGPLNAGSITATGAKSDGLRSKYSPVIG
>NZ_CP009780.1|WP_012303700.1|3221105_3221654_-|hypothetical-protein
MTQIVMLALDGEAIPLKGLTVTPTMQFQEKDQSGQTSSTATAEQGIKAKELRISGMVPFSTPEVLTRLFALAETKDAGGALKKYRVANQVAQAINFRLATFTGAIDAPKQDGKMAWLVTFTLKEFLSVSEKREARAGGKTATQKQTAGSGAAGSEAGEDAEQLSWFERKVLKPVNDALGPDS
>NZ_CP009780.1|WP_012414007.1|3221619_3222351_-|hypothetical-protein
MWRKATLSIPGNMAAVNCAMLPVHPWVYGVGRSEGSGSYLSPQNAVDHLAGKLAGSGGQQRVVVFMVCATDHPAFMQVLTQFSAVLPLPVFSQVARMASTAATLATTKMQLPANAGSGLPLPQLLSTATSRMAINAQRIAQAKDAAGAGANLAGLASALSGFTRAKAATLSSVESALNGLLAGSAQAWVFTASGSAATVASEMKKNVPQQDAVFTLATLFAGEDVTTLEAMIHDTDSYAGTGR
>NZ_CP009780.1|WP_049772382.1|3222340_3222748_-|tail-assembly-chaperone
MFYPQYMIDDGTFHADLPTDLIDITDAENTTYWRQMPPPGQVLGVIKGRPGWVDLPPPSAIDIAAKKAALTAQAKAKKTKLIGDASDEIDVLKDRIELGQDKADELKLWKSYRIALDDIDVSAPDINWPESPNVA

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Crispr_ID: NZ_CP009780_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_8

3888417-3888507

Orphan

Consensus_repeat	Method
CACAGCAAAAACCCCACGCCTTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009780_8

>merge|NZ_CP009780|8|3888417-3888507|CRISPRCasFinder
CACAGCAAAAACCCCACGCCTTTGGCATGGGGTTATCAGTAAAACGCGTAATTTCTGTGTTTCGCACACAGCAAAAACCCCACGCTTTGGG

>NZ_CP009780|8|8|3888417-3888507|CRISPRCasFinder
CACAGCAAAAACCCCACGCCTTTGG	CATGGGGTTATCAGTAAAACGCGTAATTTCTGTGTTTCGCA
CACAGCAAAAACCCCACGCTTTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_011193340.1\|3873568_3875518_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP009780.1\|WP_011193344.1\|3883766_3885155_+\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NZ_CP009780.1\|WP_011191441.1\|3896643_3897570_-\|ribokinase	unknown	unknown	gnl\|CDD\|236858
NZ_CP009780.1\|WP_011193345.1\|3885151_3887125_+\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|182508
NZ_CP009780.1\|WP_012414134.1\|3887884_3888055_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_011193343.1\|3881967_3882642_+\|formate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|182608
NZ_CP009780.1\|WP_002209614.1\|3875861_3876485_-\|superoxide-dismutase-[Mn]	unknown	unknown	gnl\|CDD\|182843
NZ_CP009780.1\|WP_002212255.1\|3901946_3903413_+\|ATPase-RavA-stimulator-ViaA	unknown	unknown	gnl\|CDD\|236815
NZ_CP009780.1\|WP_002215906.1\|3896420_3896591_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182448
NZ_CP009780.1\|WP_002215905.1\|3894230_3894920_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP009780.1\|WP_032466595.1\|3893676_3893862_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_002212250.1\|3894999_3896424_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182502
NZ_CP009780.1\|WP_011193341.1\|3876918_3877743_-\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NZ_CP009780.1\|WP_002212256.1\|3903511_3904504_-\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|225304
NZ_CP009780.1\|WP_002212252.1\|3897620_3898040_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NZ_CP009780.1\|WP_002209611.1\|3880999_3881971_+\|formate-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|273705
NZ_CP009780.1\|WP_002209609.1\|3882641_3883571_+\|formate-dehydrogenase-accessory-protein-FdhE	unknown	unknown	gnl\|CDD\|179595
NZ_CP009780.1\|WP_011191439.1\|3900404_3901943_+\|ATPase-RavA	unknown	unknown	gnl\|CDD\|184118
NZ_CP009780.1\|WP_011193342.1\|3877939_3880987_+\|formate-dehydrogenase-N-subunit-alpha	unknown	unknown	gnl\|CDD\|273689
NZ_CP009780.1\|WP_011191440.1\|3898262_3900131_-\|low-affinity-potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|182693

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_011193340.1\|3873568_3875518_-\|HAMP-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	1.11948e-120
NZ_CP009780.1\|WP_011193344.1\|3883766_3885155_+\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NZ_CP009780.1\|WP_011191441.1\|3896643_3897570_-\|ribokinase	gnl\|CDD\|236858	PRK11142, PRK11142, ribokinase; Provisional.	0
NZ_CP009780.1\|WP_002209611.1\|3880999_3881971_+\|formate-dehydrogenase-subunit-beta	gnl\|CDD\|273705	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing. This model represents the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (TIGR01553) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	3.76906e-158
NZ_CP009780.1\|WP_011193343.1\|3881967_3882642_+\|formate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|182608	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit.	1.08169e-152
NZ_CP009780.1\|WP_002209614.1\|3875861_3876485_-\|superoxide-dismutase-[Mn]	gnl\|CDD\|182843	PRK10925, PRK10925, superoxide dismutase [Mn].	1.89219e-154
NZ_CP009780.1\|WP_002212255.1\|3901946_3903413_+\|ATPase-RavA-stimulator-ViaA	gnl\|CDD\|236815	PRK10997, yieM, ATPase RavA stimulator ViaA.	0
NZ_CP009780.1\|WP_002215906.1\|3896420_3896591_-\|hypothetical-protein	gnl\|CDD\|182448	PRK10423, PRK10423, transcriptional repressor RbsR; Provisional.	1.25877e-10
NZ_CP009780.1\|WP_011193342.1\|3877939_3880987_+\|formate-dehydrogenase-N-subunit-alpha	gnl\|CDD\|273689	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit. This model describes a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase. In E. coli and Salmonella, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in E. coli which contain selenocysteine. This model is well-defined, with a large, unpopulated trusted/noise gap. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	0
NZ_CP009780.1\|WP_002215905.1\|3894230_3894920_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.18389e-68
NZ_CP009780.1\|WP_011193341.1\|3876918_3877743_-\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	6.11843e-154
NZ_CP009780.1\|WP_002212256.1\|3903511_3904504_-\|aspartate--ammonia-ligase	gnl\|CDD\|225304	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism].	0
NZ_CP009780.1\|WP_002212252.1\|3897620_3898040_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	9.97421e-87
NZ_CP009780.1\|WP_011193345.1\|3885151_3887125_+\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|182508	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional.	0
NZ_CP009780.1\|WP_002209609.1\|3882641_3883571_+\|formate-dehydrogenase-accessory-protein-FdhE	gnl\|CDD\|179595	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional.	0
NZ_CP009780.1\|WP_011191439.1\|3900404_3901943_+\|ATPase-RavA	gnl\|CDD\|184118	PRK13531, PRK13531, regulatory ATPase RavA; Provisional.	0
NZ_CP009780.1\|WP_002212250.1\|3894999_3896424_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	2.73997e-137
NZ_CP009780.1\|WP_011191440.1\|3898262_3900131_-\|low-affinity-potassium-transporter-Kup	gnl\|CDD\|182693	PRK10745, trkD, low affinity potassium transporter Kup.	0

>NZ_CP009780.1|WP_012414134.1|3887884_3888055_+|hypothetical-protein
MTELEMEKKLLNNGFTAKNIAHMRKIISRDDKQKETYSSLLIDLKKRFFAGCWHYP
>NZ_CP009780.1|WP_011193345.1|3885151_3887125_+|selenocysteine-specific-translation-elongation-factor
MIIVTAGHVDHGKTTLLQAITGVNADRLPEEKQRGMTIDLGYAYWPLPDGRIMGFIDVPGHEKFLANMLAGVGGIDHALLVVACDDGVMAQTREHLAILRLSGRPALTVALTKADRVDDERIAQVHQQILQELVAQGWSAEQISLFVTAAVTERGIGELREHLAQCHQQRDPKGRLQRRFRLAIDRVFSVKGAGLVVTGTALAGQVAVGDTLWLTGGDCPVRVRGIHAQNQPAQQAQAGQRIALNISGDISKQQINRGDWLLAQPPLPPVDRVLVTVDADTPLQHWQPLHLYHGARHITGRFSLLGHQQLIDDQQPLIDDQQPLIGHQQIINNQSTSGGHSSQILAELLLDSPLWLVENDRVILRDIGAKKTLGGARVIHLAVPSRGKRQPAYLAWLTALAQATSDREVLDLHLAQGPVSVRTFSWARQLTDNEMAALLAATDTVVAGDIALSHSHAQQAQQTLLHVLALYHQQHGDQLGLGRARLRRMALPTLDEGVVFRLIDNLLAEGALHNTRGWLHLPEHGLAFTEQEQIGWQQAAPYFVDDPWWVRDLAAELQAAEGEMRSLLRKAAQLGYITAVVTDRYYLSQRIEQLADLVRELDSSQGSVSAADFRDRLGIGRKLAIQILEFFDRSGFTRRRGNGHILRDSGLFSATGS
>NZ_CP009780.1|WP_011193344.1|3883766_3885155_+|L-seryl-tRNA(Sec)-selenium-transferase
MSAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLADWCADWPAALRQRLNQRQPALKPVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLEYSLEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFLLLTVMAAGKQVVVSRGELVEIGGAFRIPDVMRQAGCDLVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAVSEQQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGGPQAGIILGKKQWIERLQQHPLKRALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTRPASEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSLPVDRLPSWALTFTPKDGRGSTLEALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS
>NZ_CP009780.1|WP_002209609.1|3882641_3883571_+|formate-dehydrogenase-accessory-protein-FdhE
MSIRIVPKDQLGKQREKGTTAGNIPPLLFANLKSLYTRRTERLQQLALDNPLADYLDFAAKITEAQQKALHDHPLVLDMQAELVQSAASGKPPLDGSVFPRTEHWRKLLSALIAELRHDAPDHILAVLDNLDKASVHELELYADALLNRDFSQVGSEKAPFIWAALSLYWAQMASQIPGKARAEYGEHRQFCPVCGSIPVSSVVHIGTHNGLRYLHCNLCESEWHVVRIKCSNCEQTRDLNYWSLDSELAAVKAESCGDCGTYLKILYQEKDPQVEAVADDLASLILDAKMEGEGFARSSINPFLFPGE
>NZ_CP009780.1|WP_011193343.1|3881967_3882642_+|formate-dehydrogenase-cytochrome-b556-subunit
MKKEKPIQRYSAPERINHWIVAFCFILAAISGLGFFFPSFNWLMNIFGTPQMARILHPFAGVVMFAAFLIMFFRYWKHNLINKDDLEWAKNIHKIAMNEEVGDTGRYNFGQKCVFWAAIISLVLLLVSGVVIWRPYFAPSFPIPLIRLALLVHSLAAVGLIIVIMVHVYAALWVKGTITAMVEGWVPAAWAKKHHPRWYREVRSKDDARANAKGQPQEKQKEKP
>NZ_CP009780.1|WP_002209611.1|3880999_3881971_+|formate-dehydrogenase-subunit-beta
MSLQTQDIIRRSGTNSLTPPPQVRDHQEPVAKLIDVTTCIGCKACQVACSEWNDIRDEVGHNVGVYDNPADLTAKSWTVMRFSEVEDEESGKLEWLIRKDGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDNRVYKCTLCVDRVGVGQEPACVKTCPTGAIHFGTKESMKEVAAGRVAELKTRGFDNAGLYDPAGVGGTHVMYVLHHADKPQLYHGLPENPTISPTVTFWKGIWKPLAAVGFAATFAASIFHYVGVGPNRVEEEEEDDETTDPTPSETVAKAPEQTTSERSDEGETRK
>NZ_CP009780.1|WP_011193342.1|3877939_3880987_+|formate-dehydrogenase-N-subunit-alpha
MQVSRRQFFKICAGGMAGTTVAALGFAPSVALAETRNYKLLRARETRNTCTYCSVGCGLLMYSLGDGAKNAKESIFHIEGDPDHPVNRGALCPKGAGLVDFIHSESRLKYPEYRAPGSDKWQRITWDDAFTRIAKLMKEDRDANFIQTNDAGVTVNRWLSTGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWVDIKNADLIIVMGGNAAEAHPVGFRWAMEAKIHNNAKLLVIDPRFTRTASVADFYTPIRSGTDIAFLSGVLLYLISNNKINREYVEAYTNASLLVREDYAFDDGLFSGYDAENRQYDKTSWNYQLDEDGFAKRDVTLQHPRCVWNLLKEHVSRYTPEVVSNICGTPKDDFLQVCEYLAETSVSNKTATFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGINALRGHSNIQGLTDLGLLSQSLPGYLNLPSEKQPDIDTYLKANTPKTLLPGQVNYWSNYPKFFVSLMKSFYGDNAQKENGWGYDWLPKWDKGYDVLQYFEMMSQGKVNGYLCQGFNPIASFPDKNKVTAALSKLKFLVTIDPLNTETANFWQNHGEFNDVDPSKIQTEVFRLPSSCFAEENGSIVNSSRWLQWHWKGADSPGEALNDGAILAGIFMRMREMYQREGGAVPEQVLNMTWDYLTPENPEPEEVAMESNGRALADLTDADGKVLVKKGEQLSTFAQLRDDGTTSSGCWIFAGSWTPAGNQMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGKPWDPKRQLLEWDGAKWAGIDVADYSAAAPGSDVGPFIMQPEGMGRLFAIDKMAEGPFPEHYEPFETPLGTNPLHPNVISNPAARVFKDDLAAMGSHEQFPYVGTTYRLTEHFHYWTKHALLNAIAQPEQFVEIGEKLAAKKGIKQGDTVKVSSNRGFIKAKAVVTKRIRTLNVHGQEVDTIGIPIHWGYEGVAKKGFLANTLTPYVGDANTQTPEFKAFLVNVEKV
>NZ_CP009780.1|WP_011193341.1|3876918_3877743_-|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MSQIKPSRLSSSAEIRGARQLDVLQRHKLAEPQQDWLAEEVPVALVYNGISHVVMMATPKDLAAFALGFSLSEGIISSPQDIYAIEMTPGCNGIEVNIELSSRRFAGLKERRRAMAGRTGCGVCGIEQLDDIFRPITPLPFTQAFNLEHLDTALAQLKQVQPVGQLTGCTHAAAWINPEGELLGGCEDVGRHVALDKLLGIRAKQPWQQGAVLVSSRASYEMVQKTAMCGAEILFAVSAATTLAVEVAERCNLTLVGFSKPGRATVYTHPQRIK
>NZ_CP009780.1|WP_002209614.1|3875861_3876485_-|superoxide-dismutase-[Mn]
MSYSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELADLSVEDLIKDLDKVPAEKRTFMRNNAGGHANHSLFWKGLKLGTTLAGDLKAAIERDFGSVDSFKEKFEQAAATRFGSGWAWLVLKDDGKLAVVSTANQDSPLMGEAVSGVSGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWNVVNWDEAAARFAQAK
>NZ_CP009780.1|WP_011193340.1|3873568_3875518_-|HAMP-domain-containing-protein
MAVFSKIIGSFDNVKVGKKLGLSFFLMLLLVGVIAGTTAYHFSVIEEHAYKVELSYKINNEANQAKYNRALYERTYDLKYITENTQHINNIKNLLTQSANLRWSVDNRKNIANINHVVEEYQQQQTNFVNAVTNKDKVRQSWSISESLNNINALQQSLLNEGADTNTQILLAEMSQKLMTVRYNARGLLLDRNKDAETALITSINIANSAANAFMPVLSAEQQKLLAPVAANLALYKDNVLAYLPAYQQELEVGKVMEASANALNTLATQLFTQELQGTHNEINNAQYQLAIAAFVALLLGLLIAWRMTRQITVPLRATLDMAERIATGDLTAATTSSRTDELGMLMNAVARMNENLRAMIDEIRIGVSQVSHASGEIAAGNTDLSSRTEQQAAAVEETAASMEQLNATVKQNTDNAHHANQLATEASQTAQQGGKLVNDVVRTMNDISGSSKRISEITSVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAQAAKEIEGLIGESVSQVNAGTSLVKNAGNTMEEIVRSVSHVRDIMAEIASASDEQSRGITQVSLAISEMDSTTQQNAALVEESAAAADSLAEQAILLAQAVAVFRLSEDEGATDEGRVVTPKASNGRHTPEDHRINQQKSWETF
>NZ_CP009780.1|WP_032466595.1|3893676_3893862_+|hypothetical-protein
MFDLLTFTCVKAAVLKDYFLQIGILTEVTMFTALVTLQDLILFLPAETGVDIVLRVPTQIV
>NZ_CP009780.1|WP_002215905.1|3894230_3894920_+|FadR-family-transcriptional-regulator
MQLNTQQQAAQRNLSYLLAEKIGQRILAGEYEAGSILPGEIELGEQFGVSRTAVREAVKMLAAKGMLLPRPRIGTRVMPQTNWNYLDQELLTWWMTKENFDQVMQHFLILRTSLEPQACYLAATHANEKQRELLASLVAEMRALHSNFNREQWIQVDTQFHKLIYEASGNPFLISFANLFSSVYYSYFRAITGDEVIKLQHHQNIVDTILAGDNQGALFACQVLLKTVD
>NZ_CP009780.1|WP_002212250.1|3894999_3896424_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MIKSARSMAGLPWIAAMAFFMQALDATILNTALPSIAESLNRSPLTMQSAIISYTLTVAMLIPVSGWLADRFGTRRIFILAVSLFTFGSLLCALSGSLAFLVASRVIQGIGGAMMMPVARLALIRAYPRSELLPVLNFVTIPGLVGPVMGPLLGGLLVTYTTWHWIFILNIPIGLLGIFYARKYMPNFTMPKRTFDFVGFLLFGISLVMISTSLEIMGRPEIADYLPAATLLGGLLMLIFYIFHAKGHPNPLIGLPLFKTRTFSVGIAGNVASRLGTGCVPFLMPLMLQVGFGYSALIAGCMMAPTAIGSIMAKSAVTQVLRSLGYRKVLVGITLIIGVLIASFALQSPGMSAWMMILPLFILGIAMSTQFTAMNTITLADLTDNNASSGNSVLAVTQQLSISFGIAISATVLRFYDGLSLGGNVDHFHYTFITMGIVTLLSSLVFLLLKPRDGDNLIQGRNVKKVAPQVKNNV
>NZ_CP009780.1|WP_002215906.1|3896420_3896591_-|hypothetical-protein
MARAGLPIIAGYEVVSDFEFGGGLVALKQRLNNPEAEPQVLPLTPELIERGSVSLR
>NZ_CP009780.1|WP_011191441.1|3896643_3897570_-|ribokinase
METGKLVVLGSINADHILNIEQFPRPGETVIGQQYNVAFGGKGANQAVAAGRSGADIAFIACVGDDDIGERVRQQLTADKIDTQPIEAIKGATTGVALIFVNSDGENVIGINAGANSAVTPEYLRRYQQQVIDADALLMQLESPLDTVIAAAKLAKQHQTQVILNPAPARKLPDELLTLVDMITPNETEAERLTGIHIEQDDDAAKAAQILHDKGIATVIITLGSRGVWLSEQGKGKLVAGFKVNAVDTIAAGDTFNGALLTALLEGQSMDAAVRFAHAAAAIAVTRPGAQPSIPWRAEIDSFLQERV
>NZ_CP009780.1|WP_002212252.1|3897620_3898040_-|D-ribose-pyranase
MKKGVLLNADISAVISRLGHTDQIVIGDAGLPIPATTTRIDLALTRGVPGFLQVVDVVTQEMQVENAYLAEEIVKNNPQLHEALLVLLTQLEQRQENQIALRYISHEAFKEQTKQSRAVIRSGECSPFANIILGSGVTF
>NZ_CP009780.1|WP_011191440.1|3898262_3900131_-|low-affinity-potassium-transporter-Kup
MSTEHKQSLSAVTLAAIGVVYGDIGTSPLYTLRECFSGHYGFDVRPDVVFGFLSLIFWMLILVVSVKYLTYVMRADNAGEGGILTLMSLAGRNTSSRATSILVVLGLIGGSFFYGEVVITPAISVMSAIEGLEIAAPALDPYIVPCSIAVLTLLFVIQKHGTGSVGKLFAPVMLVWFLTLALLGLRSIIANPEVLAALNPKWAISFFVEYKSVSFFALGAVVLAITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPVINWTLYLAVVLVIIGFERSSNLAAAYGIAVTGTMVITSILFCTVAWKNWHWNRFLVAFLLMVLLIIDIPMFSANVLKLFSGGWLPLSLGLVMFIIMTTWKSERFSLLRRMHEHSNSLEAMIASLEKSPPVRVPGTAVYMSRAMNVIPFALLHNLKHNKVLHERVVLLTMRTDDVPYVHNVERVTIEQLSPTFWRVVARYGWRETPNVAEIFHRCGLEGLSCQMMETSFFMSHESLILTKRPWHLFLRGKLFIALSRNALRAPDQFEIPPNRVIELGTQVEI
>NZ_CP009780.1|WP_011191439.1|3900404_3901943_+|ATPase-RavA
MAQSSQLAERISRLSHALESGLYERQEAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFRHARAFEYLMTRFSTPEEVFGPLSIQALKEEGRYQRMTGGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGDREDSIPMRLLVTASNELPDADSSLEALYDRMLIRLWLDRVQEKQNFRSLLISRQNENHNPVAENLSITDEEFHQWQPLIDKITLPDHCFELIFQLRQRLSALEHAPYVSDRRWKKALRLLQASAFFSGRDEITPIDLILLKDCLWHDLNSFKLLQQQLEQLLTEQGYQQQSLLMKLQDINSKWLQHQQQQSDHQALTVVKQSGMFSRKAQYALPDNLTDSTLTLLLQKPLNLHDIQVNHLQVDKEALAQWLNKGGALRAKLNGVGYAQSIDAEIDDQLHIIILDVSRQPSTLSLPGATTTSVPPELLLALTKLESTLAEQRRLFSQHQPCLFTPSSWLAKIEASLLQVVEQLQFQQIQFQQRKFQQQKHSGH
>NZ_CP009780.1|WP_002212255.1|3901946_3903413_+|ATPase-RavA-stimulator-ViaA
MLSLATLDMLLSISEGELIEEMVVGLLAAPQLAIFFEKFPRIKRALMKDIPGWKQNLQQRIREASVPPGLANEFSLYQQSLLEDSPQFYAHLPDIVAQLQDLHSPFATQAKTLVQTADLAKNPPGGDSLQTLFLQRWRVSLILQTITIHHQLLEQEREQLLAELQRRLALSGALEPILTTNDNAAGRLWDMSQGHLQRGDYQLLLQYGDFLQQQPELIRLAEQLGRSRSAKAQPAPDARYEPYTVMVRQPDSVPEEVSGIHQSNDILRLLPTELVMLGMSELEFEFYRRLLERRLLTYRLQGDNWQEKTQQRPVSLKQNDEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALLRIALADNRRCYIMLFATEIIHYELSADNGIEQAIRFLNQHFRGGTDLAACLANTLNKMEDREWYDADAVIISDFIAQRLPEELVRKIKIQQQAHQHRFHAVAMSAYGKPGIMRIFDHIWRFDTSLKSRLIRRWKR
>NZ_CP009780.1|WP_002212256.1|3903511_3904504_-|aspartate--ammonia-ligase
MKKQFIQKQQQISFVKSFFSRQLEQQLGLIEVQAPILSRVGDGTQDNLSGSEKAVQVKVKSLPDSTFEVVHSLAKWKRKTLGRFDFGADQGVYTHMKALRPDEDRLSAIHSVYVDQWDWERVMGDGERNLAYLKSTVNKIYAAIKETEAAISAEFGVKPFLPDHIQFIHSESLRARFPDLDAKGRERAIAKELGAVFLIGIGGKLADGQSHDVRAPDYDDWTSPSAEGFSGLNGDIIVWNPILEDAFEISSMGIRVDAEALKRQLALTGDEDRLELEWHQSLLRGEMPQTIGGGIGQSRLVMLLLQKQHIGQVQCGVWGPEISEKVDGLL

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Crispr_ID: NZ_CP009780_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_9

4057737-4057849

Orphan

Consensus_repeat	Method
CTTCACTCGGCTGCTCAAATGTGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009780_9

>merge|NZ_CP009780|9|4057737-4057849|CRISPRCasFinder
CTTCACTCGGCTGCTCAAATGTGCTTTGGACGTCAACAACCCATTCAAAATCAAAAACGTATTAAAAGCCTAAGGATGATGGTCTGGCTTCACTCGCTGCTCAAATGTGCTTT

>NZ_CP009780|9|9|4057737-4057849|CRISPRCasFinder
CTTCACTCGGCTGCTCAAATGTGCTTT	GGACGTCAACAACCCATTCAAAATCAAAAACGTATTAAAAGCCTAAGGATGATGGTCTG
GCTTCACTCGCTGCTCAAATGTGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_002208933.1\|4056523_4057408_+\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|181852
NZ_CP009780.1\|WP_002223919.1\|4061278_4062442_-\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NZ_CP009780.1\|WP_002208934.1\|4053855_4056291_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	unknown	unknown	gnl\|CDD\|236530
NZ_CP009780.1\|WP_011191473.1\|4072178_4073507_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP009780.1\|WP_011191472.1\|4070294_4072103_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP009780.1\|WP_002209488.1\|4063879_4064653_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NZ_CP009780.1\|WP_011191474.1\|4073571_4074375_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP009780.1\|WP_002208936.1\|4051193_4051649_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227027
NZ_CP009780.1\|WP_011191471.1\|4069511_4070129_+\|heme-acquisition-hemophore-HasA	unknown	unknown	gnl\|CDD\|368907
NZ_CP009780.1\|WP_002216730.1\|4046604_4047633_-\|DNA-binding-transcriptional-regulator-CytR	unknown	unknown	gnl\|CDD\|182923
NZ_CP009780.1\|WP_002216737.1\|4050436_4050652_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576
NZ_CP009780.1\|WP_011191469.1\|4064819_4066193_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NZ_CP009780.1\|WP_011191468.1\|4062692_4063697_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP009780.1\|WP_041175434.1\|4057481_4057664_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_004392248.1\|4051997_4052315_-\|met-regulon-transcriptional-regulator-MetJ	unknown	unknown	gnl\|CDD\|179982
NZ_CP009780.1\|WP_011191466.1\|4052692_4053853_+\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|169194
NZ_CP009780.1\|WP_011191467.1\|4058268_4060905_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP009780.1\|WP_011191465.1\|4047985_4050184_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP009780.1\|WP_011191470.1\|4066791_4069284_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP009780.1\|WP_002208941.1\|4045693_4046539_-\|cell-division-protein-FtsN	unknown	unknown	gnl\|CDD\|237191

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_002208933.1\|4056523_4057408_+\|methylenetetrahydrofolate-reductase	gnl\|CDD\|181852	PRK09432, metF, methylenetetrahydrofolate reductase.	0
NZ_CP009780.1\|WP_002223919.1\|4061278_4062442_-\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NZ_CP009780.1\|WP_002208934.1\|4053855_4056291_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	gnl\|CDD\|236530	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional.	0
NZ_CP009780.1\|WP_011191473.1\|4072178_4073507_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	4.12924e-105
NZ_CP009780.1\|WP_011191472.1\|4070294_4072103_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP009780.1\|WP_002209488.1\|4063879_4064653_+\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.92616e-136
NZ_CP009780.1\|WP_011191474.1\|4073571_4074375_+\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	8.41417e-38
NZ_CP009780.1\|WP_011191466.1\|4052692_4053853_+\|cystathionine-gamma-synthase	gnl\|CDD\|169194	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.	0
NZ_CP009780.1\|WP_011191471.1\|4069511_4070129_+\|heme-acquisition-hemophore-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	1.23706e-101
NZ_CP009780.1\|WP_002216730.1\|4046604_4047633_-\|DNA-binding-transcriptional-regulator-CytR	gnl\|CDD\|182923	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional.	0
NZ_CP009780.1\|WP_002216737.1\|4050436_4050652_+\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	4.16591e-39
NZ_CP009780.1\|WP_011191468.1\|4062692_4063697_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP009780.1\|WP_011191469.1\|4064819_4066193_+\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NZ_CP009780.1\|WP_004392248.1\|4051997_4052315_-\|met-regulon-transcriptional-regulator-MetJ	gnl\|CDD\|179982	PRK05264, PRK05264, met regulon transcriptional regulator MetJ.	1.36793e-81
NZ_CP009780.1\|WP_002208936.1\|4051193_4051649_-\|hypothetical-protein	gnl\|CDD\|227027	COG4682, COG4682, Predicted membrane protein [Function unknown].	3.96467e-66
NZ_CP009780.1\|WP_011191467.1\|4058268_4060905_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP009780.1\|WP_011191465.1\|4047985_4050184_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP009780.1\|WP_011191470.1\|4066791_4069284_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.25236e-131
NZ_CP009780.1\|WP_002208941.1\|4045693_4046539_-\|cell-division-protein-FtsN	gnl\|CDD\|237191	PRK12757, PRK12757, cell division protein FtsN; Provisional.	2.3223e-148

>NZ_CP009780.1|WP_041175434.1|4057481_4057664_+|hypothetical-protein
MVWWFGGLVLVIGFGCYGFTAHLASDEPTANGAISVAPLEPRAFALSLAHCVGSLDSSFR
>NZ_CP009780.1|WP_002208933.1|4056523_4057408_+|methylenetetrahydrofolate-reductase
MSFFHANQREALNQSLSELQGQINVSFEFFPPRTSEMEDTLWSSIDRLSTLKPKFVSVTYGANSGERDRTHSIIKGIKERTGLEAAPHLTCIDASPTQLRDIAIDYWNSGIRHIVALRGDLPPNSGKPEMYACDLVGLLKDVGDFDISVAAYPEIHPEAKSAQADLINLKRKIDAGANRAITQFFFDVESYLRFRDRCVATGIDVEIVPGILPVSNFKQLQRFATMTNVRVPNWMTSIFDGLDNDPETRKMVGASVAMDMVKILSREGVKDFHFYTLNRAELSYAICHTLGVRP
>NZ_CP009780.1|WP_002208934.1|4053855_4056291_+|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II
MNATAVAAAATGRQLHKFGGSSLADVKCYLRVANIMANYSHPGDLMVVSAAGSTTNQLISWLKLSQNDRLSAHQVQQSLRRYQHDLINGLLPPEMAEPLISEFIHDLERLAGLLDNKIDDVIYAEVVGHGEIWSARLMSALLNKLDMDAVWLDARRFLRAERAAQPQIDESRSYPLLQQLMAQHPHQRLVVTGFISRNEAGETVLLGRNGSDYSATQVGALAGAERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHTRTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLASGLGAKIVTSHDDVCLIELQIASHHDFSLAQKEIDLLLKRAQIKPLATGIHPDRNLLQLCYTSEVVNSALRVLEDAALPGKLSLREGLALVALVGAGVSKNPLHSHRFYQQLKDQPVEFVWQAEDGISMVAVLRLGPTEHLIQGLHQSLFRAEKRIGLMLFGKGNIGARWLELFAREQKSLSARSGFEFVLAGVVDSRRSLLSYDGLDASRTLAFYNDEAKEQDEESLFLWMRAHPFDDLVVLDVTASPSLAEQYLDFASYGFHVISANKLAGASSSNNYRQIRDAFAKTGRHWLYNATVGAGLPVNHTVRDLRDSGDSILAISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRVDLSGQDVMRKLVILAREAGYDIEPNQVRVESLVPAGAESGSVDQFFENGEALNQQMIQRLEAAKEMGLVLRYVARFDANGKARVGVEAVRTDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDLNRLSQLL
>NZ_CP009780.1|WP_011191466.1|4052692_4053853_+|cystathionine-gamma-synthase
MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFIDFNQPRTHDYSRRGNPTRDVVQRALAELEGGAGAVMTSSGMSAIHLVCTTFLQPGDLLVAPHDCYGGSYRLFDSLSKRGAYRVLFVDQGDEAALNRALAEKPKLVLIETPSNPLLRVVDIAAICQAARAAGALTVCDNTFLSPALQQPLSLGADLVVHSCTKYLNGHSDVVAGAVIAKDPELVVELAWWANNIGVTGAAFDSYLLLRGLRTLSPRMAQQQRNADDIVRYLQQQPLVKKLYHPSLPQHPGHEIACRQQSGFGAMLSFELDGDEQVMRRFLSALELFTLAESLGGVESLISHAATMTHAGMAAEARIAAGITDSLLRISVGIEDSEDLIADLDHAFQLAVTR
>NZ_CP009780.1|WP_004392248.1|4051997_4052315_-|met-regulon-transcriptional-regulator-MetJ
MAEWNGEYVSPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPNDEDLRKERSDEIPEAAKILMRELGVDPDTWEY
>NZ_CP009780.1|WP_002208936.1|4051193_4051649_-|hypothetical-protein
MNPNYAKPSAAFTAASWSALLGGFVIFLIGLWNADMQLNERGYYFAVLILGLFSAVSLQKTVRDKLEGLAITSIYYGLCWVAFIVAVLLLCIGLWNATLALSEKGFYGVTFFMTLFGAIAVQKNTRDSAMSSDTESASLFKKVRDQLKAED
>NZ_CP009780.1|WP_002216737.1|4050436_4050652_+|50S-ribosomal-protein-L31
MKQGIHPKYEQVTASCSCGNVIKINSTVGHDLNLDVCGECHPFYTGKQRDVASGGRVDRFNKRFSVPGAKK
>NZ_CP009780.1|WP_011191465.1|4047985_4050184_-|primosomal-protein-N'
MSVVQVALPVPLARTFDYRLDSAMACPVVGARVSVPFGKRKAIGIVVGLSDTSTFPLEQLKTIDAILDNHSLFPPSLWRILCWATEYYHYPIGEVLFHALPILLRQGRPAQSAPLWQWFVTEQGRATPPESLKRAPKQQQALAALLQKPVYRHQVNEMALTESALQALRSKGLIDLRAQEATTTDWRHSFSVLGERLRLNTEQATAVGAIRSEDNQFAAWLLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSVWLRARSGEAAIVIGTRSALFTPFSRLGVIIIDEEHDSSYKQQEGWRYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLTKRAGSAKPAAQHLLDLKGLPLKVGLSQPLLKRMKTHLQAGNQVILFLNRRGYAPALLCHECGWIAECQRCDHYYTLHQNHRQLRCHHCDSQRPVPQQCPKCGSTHLVSVGVGTEQLENELAPLFPETPITRIDRDTTSRKGSLEQHLADVHQGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVILQTHHPEHPLLQILLQQGYDAFAKQALEERKSVFLPPYTSHIIVRSEDHDNQQSALFLQQLRNLLEASPLKDEALWIMGPVPALQAKRGGRFRWQLLLQHPSRQLLQRLIKTSQPLISTLPQARKVKWTIDVDPIDS
>NZ_CP009780.1|WP_002216730.1|4046604_4047633_-|DNA-binding-transcriptional-regulator-CytR
MENKKEFTMTTMKDVAEMAGVSTATVSRALMNPEKVSTVTRQKVEQAVLAVGYSPHALSRNIKRNESRTILVIVPDISDPFFADVIQGIEHAAAQQGYLILIGDCAQQTQQERTFVNLIITKQIDGMLLLGSNLPFDASKEEQRNLPPMVMANEFAPELELPTVHIDNLTAAYEAVNYLHELGHKRIACIAGPESLPLSHYRLQGYIQALRRNGITVDNDYIIRGDFSYEAGAQSFAALMELPHPPTAIFSHNDVMAVGAIWQAKQLGLRIPQDVSLVGFDDLKLSQFCDPPLTTVAQPRYQIGQQAMLLLLEQLQGHSVQSGSRLLDTELIIRESTAAPKH
>NZ_CP009780.1|WP_002208941.1|4045693_4046539_-|cell-division-protein-FtsN
MAQRDYVSRGRSGARRKSTSRKKRSAPIVSKTVMALAVALLVVFVGGLYFITHNKPGELPLLPNHDPRTGNGLPPKPEERWRYIKELENRQIGVPMPTEPSAGGEVNAKTELTNEQRQLLEQMQADMRQQPTQLSEVPYNQGMQQVPRSAVTIKPPATSVQPQPVTPPRQTTIPVQPQAPAPVRTPPAAPVTQAVTPPKVEKEKEKTQRWMVQCGSFKAVDQAESIRAQLAFAGIESRITSGGGWNRVVLGPYNSKAAADKALQRLQGAGQSGCIPLSVGG
>NZ_CP009780.1|WP_011191467.1|4058268_4060905_-|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKRDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NZ_CP009780.1|WP_002223919.1|4061278_4062442_-|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NZ_CP009780.1|WP_011191468.1|4062692_4063697_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSELHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVAHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NZ_CP009780.1|WP_002209488.1|4063879_4064653_+|acetylglutamate-kinase
MNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NZ_CP009780.1|WP_011191469.1|4064819_4066193_+|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALNTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NZ_CP009780.1|WP_011191470.1|4066791_4069284_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQSYSGQLAANTATIPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NZ_CP009780.1|WP_011191471.1|4069511_4070129_+|heme-acquisition-hemophore-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVMDSNDMLLAA
>NZ_CP009780.1|WP_011191472.1|4070294_4072103_+|type-I-secretion-system-permease/ATPase
MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPAFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPEAKIRNSRSGWSNGVSYGIGPARTTSSPKP
>NZ_CP009780.1|WP_011191473.1|4072178_4073507_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESACYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGYIAKNKLLEMESQLTSLQARVEQGTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPIGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NZ_CP009780.1|WP_011191474.1|4073571_4074375_+|energy-transducer-TonB
MNRLQQSSEKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRINQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSNSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK

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Crispr_ID: NZ_CP009780_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009780_10

4300135-4300233

Orphan

Consensus_repeat	Method
GCGTGGGGTTTTTGCTGTGTGCGAAACACAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009780_10

>merge|NZ_CP009780|10|4300135-4300233|CRISPRCasFinder
GCGTGGGGTTTTTGCTGTGTGCGAAACACAGAAATTACGCGTTTTACTGATAACCCCATGCCAAAGGCGTGGGGTTTTTGCTGTGTACGAAACACAGAA

>NZ_CP009780|10|10|4300135-4300233|CRISPRCasFinder
GCGTGGGGTTTTTGCTGTGTGCGAAACACAGAA	ATTACGCGTTTTACTGATAACCCCATGCCAAAG
GCGTGGGGTTTTTGCTGTGTACGAAACACAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009780.1\|WP_002210685.1\|4286617_4287403_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_072080736.1\|4304101_4305115_+\|hydrolase	unknown	unknown	gnl\|CDD\|223489
NZ_CP009780.1\|WP_002230622.1\|4289404_4289995_+\|YjaG-family-protein	unknown	unknown	gnl\|CDD\|225610
NZ_CP009780.1\|WP_011191565.1\|4311515_4312148_-\|two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|185267
NZ_CP009780.1\|WP_011191562.1\|4305188_4306844_-\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495
NZ_CP009780.1\|WP_001297096.1\|4301996_4302776_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP009780.1\|WP_011191566.1\|4312160_4314980_-\|two-component-system-sensor-kinase	unknown	unknown	gnl\|CDD\|237951
NZ_CP009780.1\|WP_002210686.1\|4287521_4288589_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP009780.1\|WP_011191559.1\|4292693_4294283_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP009780.1\|WP_002210687.1\|4288618_4289359_+\|deoxyribonuclease-V	unknown	unknown	gnl\|CDD\|236937
NZ_CP009780.1\|WP_032466595.1\|4294774_4294960_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009780.1\|WP_011191554.1\|4285742_4286525_+\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|234699
NZ_CP009780.1\|WP_086025310.1\|4300504_4301604_+\|IS3-like-element-ISYpe1-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP009780.1\|WP_002209030.1\|4306840_4307152_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP009780.1\|WP_012413428.1\|4310021_4311338_+\|glutamate/aspartate:proton-symporter-GltP	unknown	unknown	gnl\|CDD\|183075
NZ_CP009780.1\|WP_002210689.1\|4290183_4290459_+\|DNA-binding-protein-HU-alpha	unknown	unknown	gnl\|CDD\|138142
NZ_CP009780.1\|WP_011191563.1\|4307208_4309167_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP009780.1\|WP_012303442.1\|4290508_4291162_+\|DUF1481-domain-containing-protein	unknown	unknown	gnl\|CDD\|369329
NZ_CP009780.1\|WP_011191558.1\|4291347_4292634_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP009780.1\|WP_012413427.1\|4302775_4303798_-\|IS21-like-element-IS100-family-transposase	unknown	unknown	gnl\|CDD\|226950

Protein	Function_ID	Function_description	E-value
NZ_CP009780.1\|WP_072080736.1\|4304101_4305115_+\|hydrolase	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	1.01462e-12
NZ_CP009780.1\|WP_002230622.1\|4289404_4289995_+\|YjaG-family-protein	gnl\|CDD\|225610	COG3068, COG3068, Uncharacterized protein conserved in bacteria [Function unknown].	2.9305e-125
NZ_CP009780.1\|WP_011191565.1\|4311515_4312148_-\|two-component-system-response-regulator	gnl\|CDD\|185267	PRK15369, PRK15369, two component system response regulator.	4.88575e-140
NZ_CP009780.1\|WP_011191562.1\|4305188_4306844_-\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP009780.1\|WP_001297096.1\|4301996_4302776_-\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.26232e-178
NZ_CP009780.1\|WP_011191566.1\|4312160_4314980_-\|two-component-system-sensor-kinase	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	0
NZ_CP009780.1\|WP_002210686.1\|4287521_4288589_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP009780.1\|WP_011191558.1\|4291347_4292634_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP009780.1\|WP_002210687.1\|4288618_4289359_+\|deoxyribonuclease-V	gnl\|CDD\|236937	PRK11617, PRK11617, deoxyribonuclease V.	1.72632e-161
NZ_CP009780.1\|WP_011191559.1\|4292693_4294283_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP009780.1\|WP_011191554.1\|4285742_4286525_+\|NAD(+)-diphosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	9.7923e-170
NZ_CP009780.1\|WP_086025310.1\|4300504_4301604_+\|IS3-like-element-ISYpe1-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	9.29319e-29
NZ_CP009780.1\|WP_002209030.1\|4306840_4307152_-\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	1.68243e-49
NZ_CP009780.1\|WP_012413428.1\|4310021_4311338_+\|glutamate/aspartate:proton-symporter-GltP	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	0
NZ_CP009780.1\|WP_002210689.1\|4290183_4290459_+\|DNA-binding-protein-HU-alpha	gnl\|CDD\|138142	PRK10753, PRK10753, DNA-binding protein HU-alpha.	2.50851e-45
NZ_CP009780.1\|WP_011191563.1\|4307208_4309167_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP009780.1\|WP_012303442.1\|4290508_4291162_+\|DUF1481-domain-containing-protein	gnl\|CDD\|369329	pfam07356, DUF1481, Protein of unknown function (DUF1481). This family consists of several hypothetical bacterial proteins of around 230 residues in length. Members of this family are often referred to as YjaH and are found in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.	5.62648e-99
NZ_CP009780.1\|WP_012413427.1\|4302775_4303798_-\|IS21-like-element-IS100-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.85724e-78

>NZ_CP009780.1|WP_032466595.1|4294774_4294960_-|hypothetical-protein
MFDLLTFTCVKAAVLKDYFLQIGILTEVTMFTALVTLQDLILFLPAETGVDIVLRVPTQIV
>NZ_CP009780.1|WP_011191559.1|4292693_4294283_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MQQRRPIRRALLSVSDKAGIIEFAQALSQRGIELLSTGGTARLLADAGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDGIMAQHGIQPIDIVVVNLYPFAQTVARPDCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYPAIITELDNNDGSLTYPTRFNLAIKAFEHTAAYDSMIANYFGTLVPPYHGDTEQPSGHFPRTLNLNYIKKQDMRYGENSHQQAAFYIEEDVKEASVATAQQLQGKALSYNNIADTDAALECVKEFSEPACVIVKHANPCGVAIGDSILAAYERAYQTDPTSAFGGIIAFNRELDAATANAIISRQFVEVIIAPTVSSDALALLAAKQNVRVLTCGQWQARSAGLDFKRVNGGLLVQERDLGMVTAADLRVVSKRQPTEQELRDALFCWKVAKFVKSNAIVYARDNMTIGIGAGQMSRVYSAKIAGIKAADEGLEVAGSAMASDAFFPFRDGIDAAAAVGITCVIQPGGSIRDDEVIAAADEHGIAMIFTDMRHFRH
>NZ_CP009780.1|WP_011191558.1|4291347_4292634_-|phosphoribosylamine--glycine-ligase
MNILIIGNGGREHALGWKAAQSPLADKIYVAPGNAGTALEPTLENVDIAATDIAGLLAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTLEEAETAVNDMLAGNAFGDAGHRIVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGKLNEKTSDWDERPSLGVVLAAGGYPADYRQGDVIHGLPQQEVKDGKVFHAGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQWEGVFCRKDIGYRAIARGK
>NZ_CP009780.1|WP_012303442.1|4290508_4291162_+|DUF1481-domain-containing-protein
MRRVLITFGLTLGLSACSSLSDPPQFSASGYIADSGVVRLWRQDNAQQQPQVLMSVYSPYFGGNTRVTFYEYQNGILREIRRNDLGATPQSVQLRFDEQGQVSFMQRQLASRRESLSADDIAVYQLEAKRILELSRVLRAGDVRLIQGRWQDGMLTTCAGKTLRLNLDDNSQAWLTTRGEKNTQPLGVAWLDSSEGQQLLLVANQDFCRWEPQAGSL
>NZ_CP009780.1|WP_002210689.1|4290183_4290459_+|DNA-binding-protein-HU-alpha
MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDPVQLVGFGTFKVNHRNERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVKS
>NZ_CP009780.1|WP_002230622.1|4289404_4289995_+|YjaG-family-protein
MLRNPIHLRLEKLESWQHLTFMACLCERMYPNYQQFCLETGFGDPAVYRRILDLIWETLVVKDAKVNFDSQLEKLEEAIPSSDDYAIYGVYPAIDACIALSEAIHSRLSGETLEHAIAISEASIRTVAMLEMTLAGKEMTDEELKILPAIEEEWDIQWEIFRLLADCEERDLDLIKGLRSDLREAAVSNIGINLTQ
>NZ_CP009780.1|WP_002210687.1|4288618_4289359_+|deoxyribonuclease-V
MVKTKSRVETKSMFDTKALQAEQRQRASEISLHDGIDNQSVRFIAGADVGFEQHGEITRAAIAILRYPSLALVEYQVARVATSLPYIPGLLSFREYPALLAAWAQLQQRPDLILVDGQGIAHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFLPLHQDVGAVQPLFDNDEQLGWVWRSKIRCNPLFISPGHRVSVGSALAWVQRCMAGYRLPEPTRWADAIASNRPQFQRWLRKNPDFLGKRRDMI
>NZ_CP009780.1|WP_002210686.1|4287521_4288589_+|uroporphyrinogen-decarboxylase
MNELKNDRYLRALLRQPVDMTPVWMMRQAGRYLPEYKATRAIAGDFMSLCKNAELACEVTMQPLRRYPLDAAILFSDILTIPDAMGLGLYFETGEGPRFQSPITCRADVEKLPIPDPEQELGYVMNAVRTIRRELAGSVPLIGFSGSPWTLATYMVEGGSSKAFTKLKKMMYAEPQTLHLLLDKLADSVILYLNAQIKAGAQSVMIFDTWGGVLTGRDYHEFSLNYMHKIVDGLIRENEGRRVPVTLFTKGGGPWLEAMAATGCDALGLDWTTDIADARRRVGDKVALQGNMDPSVLYAPPARIEQEVSTILASFGQGEGHVFNLGHGIHQDVPPAHAGAFVNAVHALSRPYHQK
>NZ_CP009780.1|WP_002210685.1|4286617_4287403_+|hypothetical-protein
MRPIITQTVQPVTSMYPSLPKAFIQDKVMLSLHNKAALDSTIKGDAVRALLLHAYVDIKGNEVERRTTAVGIQKLYEEVLQELLYQDPKCISVMISHTANPPTPLSIASPERVMQMMHQNIRQDIASQKTITDRTQTLHNLLSYKNQFQYKAIYDQPRLKPEENYNFKMVNDVHENLHSIQTDSCCKAGALTGATYFLQDSPGEIHVFGIRITQANEESGKVELFQGLKSDVQTNNKLDSLYLLLRGNSHQSPDDISSSVG
>NZ_CP009780.1|WP_011191554.1|4285742_4286525_+|NAD(+)-diphosphatase
MELQLTGKESGWWIVSHENKLWLPKGELPQGNAANWSLQGATARQIGEWQGQPVWLIRQMMPSGMGSVRQLLDVDRGLFQLAGRGVQLAEFYRSHRFCGYCGHEMHASRTEWASLCNHCRERYYPQIAPCVIVAIRRGDEILLAQHVRHRGGINTVLAGFVEVGETLEQAVSREVLEESNIHIKNLRYVTSQPWPFPHSLMMAFMADYDSGELCHDPKELLNAGWYRYDQLPLLPPPGTVARRLIEDTVVLCREHSDLSQ
>NZ_CP009780.1|WP_086025310.1|4300504_4301604_+|IS3-like-element-ISYpe1-family-transposase
MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKFLRPLQKRDAVEYLLAAYRIGVRRGCRLMMQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRREGWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLFNGRRVRALTIVDNFSRECLAIEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDCSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAEFARSHQKGPDL
>NZ_CP009780.1|WP_001297096.1|4301996_4302776_-|AAA-family-ATPase
MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
>NZ_CP009780.1|WP_012413427.1|4302775_4303798_-|IS21-like-element-IS100-family-transposase
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNALRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
>NZ_CP009780.1|WP_072080736.1|4304101_4305115_+|hydrolase
MNYQSSWLAGKYTDFALWRSDTRKILRQALLTPNSTITFSAEKIEQQDRGSYIAEKIALNITDESRVLGLLLTPKTKGPHPAIVLLHDHGSKFDIGKEKMIRPWGDSAKLASAQAWSDKFFSGKFVGDELAKRGYVVFSIDSIGWGDRGPMSYERQQALASNFFNLGRSLAGTMAYEDMRTVDFMTTLPSVDRKRIGVLGFSMGAYRAWQLAALSDQVAATAAISWFGNYKGLMTPDNNVLRGQSSFYMLHPGIANKLDFPDIASLAAPRPMLLFNGGKDKLFPAQAVEQAYDKVHAIWRSQNAEPRLVTRSWPTLGHVFYQEQQDVVFLWLDRWLK
>NZ_CP009780.1|WP_011191562.1|4305188_4306844_-|cation/acetate-symporter-ActP
MKIRHWSALSLFVLPALAQAEALTGEVHRQPLNIQAIVMFLLFVGGTLYITYWASKRTRSRQDYYTAGGRITGFQNGLAIAGDYMSAASFLGISALVYASGYDGLIYSIGFLIGWPIILFLIAERLRNLGRYTFADVASYRLQQRPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVMLLSGATFMAIMVMKSVNFNFNTLFSEAVKVHPKGLSIMSPGGLVSDPISALSLGLALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVGPNQTFKDAAGALLGGNNMAAVHLANAVGGSFFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVIKKGKANERDELRVSKITVIILGIVAIGLGILFEKQNIAFMVGLAFSIAASCNFPIIIISMYWDKLTTRGAMIGGWLGLSTAVILMILGPTIWVTILGHEKPIYPYEYPALFSMIAAFVGTWFFSITDNSETGKQERLLFKSQFVRSQTGLGASKGGAH
>NZ_CP009780.1|WP_002209030.1|4306840_4307152_-|DUF485-domain-containing-protein
MNDSIYQEIEDNPRFQELVKKRSRFAWLLSLITLTMYVAFIFLIAFEPQWLGTPIYTGSSVTRGIPVGVGLIVTSFILTGIYVIRANGEFDRLTAEIIREVKQ
>NZ_CP009780.1|WP_011191563.1|4307208_4309167_-|acetate--CoA-ligase
MSQIHKHPIPAAIAEHALITPEKYQHYYQQSVQNPDEFWGEQGKIIDWIKPYKTVKNTSFDPGHVSIRWFEDGTLNLAANCLDRHLAERGDQTAIIWEGDDPNQSKTVTYKQLHHDVCQFANVLKSLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPDAVAGRIIDSHSKLVITADEGIRAGRAIPLKKNVDEALKNPAITSIKNVVVFQRTGNASYWEDGRDVWWHDLIKEASADCPPEEMNAEDPLFILYTSGSTGKPKGVVHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAITLMFEGVPNYPGVNRLSQVVDKHKVNILYTAPTAIRALMAEGDKAIEGTKRDSLRIMGSVGEPINPEAWEWYYNKIGNSKCPIVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPALVDNLGNPQEGVAEGNLVITDSWPGQARTLFGDHDRFEQTYFSTFKGMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGVPHNIKGQAIYAYITLNHGEEPTPELYTEVRNWVRKEIGPLATPDILHWTDSLPKTRSGKIMRRILRKIATGDTSNLGDTSTLADPSVVEKLLEEKQSMQTPS
>NZ_CP009780.1|WP_012413428.1|4310021_4311338_+|glutamate/aspartate:proton-symporter-GltP
MKSIKISLAWQILIALVLGILVGAVLHNQIESREWLVSNILSPAGDIFIRLIKMIVVPIVISTLIVGIAGVGDVKKLGRIGLKTIIYFEVITTIAIIIGITLANVFQPGVGIDMSALTVVDISQYEKTTEQVQSGSHSLVSTILSLIPANVFASMAKGDMLPIIFFSVLFGLGLSSLPKETKEPLLNVFKAVSESMFKVTHMIMRYAPIGVFGLISVTVANFGFASLIPLAKLVILVYAAILFFALVILGTVARLCKLRIWILIRILKDELILAYSTASSETVLPRIIEKMEAYGAPKAITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIELSIGQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWENQFDDKKAKAYEKALFAAEQTPANQS
>NZ_CP009780.1|WP_011191565.1|4311515_4312148_-|two-component-system-response-regulator
MNTKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPGMDGLDVIIQLLRRWPAMKILTLTARNEEHYASRTFNSGALGYVLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGPANTPTVLTPRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGLNV
>NZ_CP009780.1|WP_011191566.1|4312160_4314980_-|two-component-system-sensor-kinase
MGKASSLVTRLTLLLGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIKHYDSCYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRIGFAWEALKPALYQLPFALVILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAKAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRYFVDNALCYLPGRLYANLKQYLQGAETEVLKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTLADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQDIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009780_1	1.1\|511280\|36\|NZ_CP009780\|CRISPRCasFinder	511280-511315	36	NZ_CP028488	Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence	94279-94314	4	0.889
NZ_CP009780_1	1.1\|511280\|36\|NZ_CP009780\|CRISPRCasFinder	511280-511315	36	NZ_CP054046	Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence	5758-5793	6	0.833
NZ_CP009780_1	1.1\|511280\|36\|NZ_CP009780\|CRISPRCasFinder	511280-511315	36	NZ_CP032488	Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence	55932-55967	6	0.833
NZ_CP009780_1	1.1\|511280\|36\|NZ_CP009780\|CRISPRCasFinder	511280-511315	36	NZ_CP032236	Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence	10438-10473	6	0.833
NZ_CP009780_1	1.1\|511280\|36\|NZ_CP009780\|CRISPRCasFinder	511280-511315	36	NZ_CP025802	Yersinia ruckeri strain SC09 plasmid pLT, complete sequence	50213-50248	6	0.833
NZ_CP009780_1	1.1\|511280\|36\|NZ_CP009780\|CRISPRCasFinder	511280-511315	36	NZ_CP054047	Yersinia massiliensis strain 2011N-4075 plasmid unnamed2, complete sequence	45314-45349	6	0.833
NZ_CP009780_1	1.1\|511280\|36\|NZ_CP009780\|CRISPRCasFinder	511280-511315	36	NZ_LN681230	Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence	40349-40384	6	0.833
NZ_CP009780_3	3.9\|1135404\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135404-1135435	32	NZ_CP037433	Lactobacillus plantarum strain EM plasmid pEM4, complete sequence	16919-16950	6	0.812
NZ_CP009780_3	3.9\|1135404\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135404-1135435	32	NZ_CP037433	Lactobacillus plantarum strain EM plasmid pEM4, complete sequence	35450-35481	6	0.812
NZ_CP009780_4	4.5\|2127477\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127477-2127508	32	AP018277	Calothrix sp. NIES-4101 plasmid plasmid4 DNA, complete genome	76706-76737	6	0.812
NZ_CP009780_3	3.7\|1135282\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135282-1135313	32	NZ_CP018742	Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence	160965-160996	7	0.781
NZ_CP009780_3	3.9\|1135404\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135404-1135435	32	NZ_CP009710	Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence	14677-14708	7	0.781
NZ_CP009780_3	3.9\|1135404\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135404-1135435	32	NC_006154	Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence	7733-7764	7	0.781
NZ_CP009780_3	3.11\|1135525\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135525-1135556	32	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	270051-270082	7	0.781
NZ_CP009780_3	3.11\|1135525\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135525-1135556	32	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	1676974-1677005	7	0.781
NZ_CP009780_4	4.5\|2127477\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127477-2127508	32	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	199240-199271	7	0.781
NZ_CP009780_4	4.3\|2127357\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127357-2127388	32	GU071097	Synechococcus phage S-SSM5, complete genome	125694-125725	8	0.75
NZ_CP009780_10	10.1\|4300168\|33\|NZ_CP009780\|CRISPRCasFinder	4300168-4300200	33	NZ_KX274135	Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence	60674-60706	8	0.758
NZ_CP009780_3	3.7\|1135282\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135282-1135313	32	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	40985-41016	9	0.719
NZ_CP009780_3	3.7\|1135282\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135282-1135313	32	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	49228-49259	9	0.719
NZ_CP009780_3	3.7\|1135282\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135282-1135313	32	NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	19288-19319	9	0.719
NZ_CP009780_3	3.7\|1135282\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135282-1135313	32	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	31830-31861	9	0.719
NZ_CP009780_3	3.7\|1135282\|32\|NZ_CP009780\|PILER-CR,CRISPRCasFinder,CRT	1135282-1135313	32	AP013580	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C16-MedDCM-OCT-S43-C44, * SEQUENCING IN PROGRESS *	16672-16703	9	0.719
NZ_CP009780_4	4.2\|2127297\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127297-2127328	32	NZ_CP032703	Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence	47746-47777	9	0.719
NZ_CP009780_4	4.3\|2127357\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127357-2127388	32	NZ_CP020003	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence	39669-39700	9	0.719
NZ_CP009780_4	4.3\|2127357\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127357-2127388	32	MK905543	Vibrio phage USC-1, complete genome	129260-129291	9	0.719
NZ_CP009780_4	4.3\|2127357\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127357-2127388	32	MK358448	Vibrio phage 5, complete genome	135485-135516	9	0.719
NZ_CP009780_4	4.8\|2127658\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127658-2127689	32	NZ_CP013635	Rhizobium sp. N324 plasmid pRspN324e, complete sequence	243008-243039	9	0.719
NZ_CP009780_4	4.8\|2127658\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127658-2127689	32	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1123208-1123239	9	0.719
NZ_CP009780_4	4.8\|2127658\|32\|NZ_CP009780\|CRISPRCasFinder,CRT,PILER-CR	2127658-2127689	32	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	125050-125081	9	0.719

1. spacer 1.1|511280|36|NZ_CP009780|CRISPRCasFinder matches to NZ_CP028488 (Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.889

gaaaaagccaacgacggatctcttcaacggcaatgc	CRISPR spacer
ggccaagccaatgacggatctcttcaacggcaatgc	Protospacer
*.  *******.************************

2. spacer 1.1|511280|36|NZ_CP009780|CRISPRCasFinder matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.833

gaaaaagccaacgacggatctcttcaacggcaatgc	CRISPR spacer
ggcccagccaatggcggatctcttcaacggcaatgc	Protospacer
*.   ******.*.**********************

3. spacer 1.1|511280|36|NZ_CP009780|CRISPRCasFinder matches to NZ_CP032488 (Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence) position: , mismatch: 6, identity: 0.833

gaaaaagccaacgacggatctcttcaacggcaatgc	CRISPR spacer
ggcccagccaatggcggatctcttcaacggcaatgc	Protospacer
*.   ******.*.**********************

4. spacer 1.1|511280|36|NZ_CP009780|CRISPRCasFinder matches to NZ_CP032236 (Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence) position: , mismatch: 6, identity: 0.833

gaaaaagccaacgacggatctcttcaacggcaatgc	CRISPR spacer
ggccaagccaatgacggatctcttcaacggcgatcc	Protospacer
*.  *******.*******************.** *

5. spacer 1.1|511280|36|NZ_CP009780|CRISPRCasFinder matches to NZ_CP025802 (Yersinia ruckeri strain SC09 plasmid pLT, complete sequence) position: , mismatch: 6, identity: 0.833

gaaaaagccaacgacggatctcttcaacggcaatgc	CRISPR spacer
ggccaagccaatgacggatctcttcaacggcgatcc	Protospacer
*.  *******.*******************.** *

6. spacer 1.1|511280|36|NZ_CP009780|CRISPRCasFinder matches to NZ_CP054047 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.833

gaaaaagccaacgacggatctcttcaacggcaatgc	CRISPR spacer
ggccaagccaatgacggatctcttcaacagcaatac	Protospacer
*.  *******.****************.*****.*

7. spacer 1.1|511280|36|NZ_CP009780|CRISPRCasFinder matches to NZ_LN681230 (Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence) position: , mismatch: 6, identity: 0.833

gaaaaagccaacgacggatctcttcaacggcaatgc	CRISPR spacer
ggccaagccaatgacggatctcttcaacggcgatcc	Protospacer
*.  *******.*******************.** *

8. spacer 3.9|1135404|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037433 (Lactobacillus plantarum strain EM plasmid pEM4, complete sequence) position: , mismatch: 6, identity: 0.812

aacaacgccgcagacgcaaccag---tgccaatac	CRISPR spacer
aagaacgccgcatacgcaaccagaattgcaaa---	Protospacer
** ********* **********   *** **

9. spacer 3.9|1135404|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037433 (Lactobacillus plantarum strain EM plasmid pEM4, complete sequence) position: , mismatch: 6, identity: 0.812

aacaacgccgcagacgcaaccag---tgccaatac	CRISPR spacer
aagaacgccgcatacgcaaccagaattgcaaa---	Protospacer
** ********* **********   *** **

10. spacer 4.5|2127477|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to AP018277 (Calothrix sp. NIES-4101 plasmid plasmid4 DNA, complete genome) position: , mismatch: 6, identity: 0.812

tactgct--cagatatttggcgtgtcttttcttg	CRISPR spacer
--ctgctggcagatatttgccgtgtattttctgc	Protospacer
  *****  ********** ***** ******

11. spacer 3.7|1135282|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018742 (Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence) position: , mismatch: 7, identity: 0.781

atctttaaacatatttaaatctattgctaatt	CRISPR spacer
ttttttaaacatatttaaatcaatagctgcat	Protospacer
 *.****************** ** ***.  *

12. spacer 3.9|1135404|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009710 (Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence) position: , mismatch: 7, identity: 0.781

aacaacgccgcagacgcaaccagtgccaatac	CRISPR spacer
gccgcagacgcagacgcaaccagtgctaatac	Protospacer
. *.  * ******************.*****

13. spacer 3.9|1135404|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NC_006154 (Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence) position: , mismatch: 7, identity: 0.781

aacaacgccgcagacgcaaccagtgccaatac	CRISPR spacer
gccgcagacgcagacgcaaccagtgctaatac	Protospacer
. *.  * ******************.*****

14. spacer 3.11|1135525|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.781

tcaaaaacctgatggcagtggcccggcaatat	CRISPR spacer
tcggcttcctgatggcagtcgccaggcaatat	Protospacer
**..   ************ *** ********

15. spacer 3.11|1135525|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 7, identity: 0.781

tcaaaaacctgatggcagtggcccggcaatat	CRISPR spacer
tcggtttcctgatggcggtggcccggcagtat	Protospacer
**..   *********.***********.***

16. spacer 4.5|2127477|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 7, identity: 0.781

tactgctcagatatttggcgtgtcttttcttg	CRISPR spacer
taaacctcagatatttggccagtcttttaatg	Protospacer
**   **************  *******  **

17. spacer 4.3|2127357|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to GU071097 (Synechococcus phage S-SSM5, complete genome) position: , mismatch: 8, identity: 0.75

cgcatttg-ctcaacttctttattagcattagc	CRISPR spacer
-gtagtaacctcaacttctttatctgcattaga	Protospacer
 *.* * . **************. *******

18. spacer 10.1|4300168|33|NZ_CP009780|CRISPRCasFinder matches to NZ_KX274135 (Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence) position: , mismatch: 8, identity: 0.758

attacgcgttttactgataaccccatgccaaag	CRISPR spacer
aaaaatcgttttgctgataacctcatgccattg	Protospacer
*  *  ******.*********.*******  *

19. spacer 3.7|1135282|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

atctttaaacatatttaaatctattgctaatt	CRISPR spacer
aaacaaacacttatctaaatctattgctaatg	Protospacer
*  .  * ** ***.****************

20. spacer 3.7|1135282|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 9, identity: 0.719

atctttaaacatatttaaatctattgctaatt	CRISPR spacer
aaacaaacacttatctaaatctattgctaatg	Protospacer
*  .  * ** ***.****************

21. spacer 3.7|1135282|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atctttaaacatatttaaatctattgctaatt	CRISPR spacer
aaacaaacacttatctaaatctattgctaatg	Protospacer
*  .  * ** ***.****************

22. spacer 3.7|1135282|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 9, identity: 0.719

atctttaaacatatttaaatctattgctaatt	CRISPR spacer
aaacaaacacttatctaaatctattgctaatg	Protospacer
*  .  * ** ***.****************

23. spacer 3.7|1135282|32|NZ_CP009780|PILER-CR,CRISPRCasFinder,CRT matches to AP013580 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C16-MedDCM-OCT-S43-C44, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

atctttaaacatatttaaatctattgctaatt	CRISPR spacer
tccaattaaaataattaaatctattgctaaaa	Protospacer
 .*  * ** *** ****************

24. spacer 4.2|2127297|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tagagtgttttttctgacgatgttccttgctg	CRISPR spacer
cagagtgttttttctgccgacgttctgctttc	Protospacer
.*************** ***.****. . .*

25. spacer 4.3|2127357|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020003 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgcatttgctcaacttctttattagcattagc	CRISPR spacer
ccttctttctcaacatctttattagcatttaa	Protospacer
* . .** ****** ************** .

26. spacer 4.3|2127357|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 9, identity: 0.719

cgcatttgctcaacttctttattagcattagc	CRISPR spacer
aaaacgtaatcaacttctttcttaccattagc	Protospacer
 . *. *. *********** *** *******

27. spacer 4.3|2127357|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 9, identity: 0.719

cgcatttgctcaacttctttattagcattagc	CRISPR spacer
aaaacgtaatcaacttctttcttaccattagc	Protospacer
 . *. *. *********** *** *******

28. spacer 4.8|2127658|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 9, identity: 0.719

aagagccgccttcttgtcttccgcgcgttgtt	CRISPR spacer
taacgaagccatcttttcttccgcgcgttgac	Protospacer
 *. *  *** **** ************** .

29. spacer 4.8|2127658|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 9, identity: 0.719

aagagccgccttcttgtcttccgcgcgttgtt	CRISPR spacer
taacgaagccatcttttcttccgcgcgttgac	Protospacer
 *. *  *** **** ************** .

30. spacer 4.8|2127658|32|NZ_CP009780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 9, identity: 0.719

aagagccgccttcttgtcttccgcgcgttgtt	CRISPR spacer
taacgaagccatcttttcttccgcgcgttgac	Protospacer
 *. *  *** **** ************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

735542 : 779889

Pseudomonas_phage(23.81%)

protease,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210815.1\|735542_736052_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_002210816.1\|736086_736344_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	4.0e-20	54.9
WP_002210817.1\|736347_737478_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	7.6e-172	78.6
WP_002210818.1\|737639_739928_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.1e-286	64.9
WP_002210820.1\|740421_741150_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_012413581.1\|741449_744125_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	1.4e-102	34.4
WP_012413582.1\|744312_747186_+	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	3.8e-42	28.3
WP_002210824.1\|747253_747907_-	transcriptional regulator RcsB	NA	NA	NA	NA
WP_011191996.1\|747909_750603_-	phosphotransferase RcsD	NA	NA	NA	NA
WP_002210825.1\|750626_751781_-	MFS transporter	NA	NA	NA	NA
WP_012413583.1\|752884_754000_+	porin OmpC	Q1MVN1	Enterobacteria_phage	3.3e-111	57.8
WP_002228026.1\|754739_755906_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA
WP_012413584.1\|756180_757707_-	MFS transporter	NA	NA	NA	NA
WP_002230695.1\|758083_759112_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002208868.1\|759185_760973_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5
WP_012413585.1\|761424_762360_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA
WP_002208866.1\|762531_762774_-	DinI family protein	K7PKR6	Enterobacteria_phage	6.9e-22	65.0
WP_002208864.1\|762979_763702_-	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_002215470.1\|763975_764455_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_012304340.1\|764665_765970_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.6e-91	46.2
WP_032466639.1\|766026_766698_+	aldolase	A0A077SK32	Escherichia_phage	1.3e-57	54.9
WP_002208861.1\|766700_767513_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002208860.1\|767488_768283_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_011192001.1\|768522_768813_+	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_002208858.1\|768858_769476_+	ATP-binding protein	NA	NA	NA	NA
WP_002208857.1\|769480_769675_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-08	60.4
WP_002208856.1\|769671_771180_+\|tail	tail protein	B5TK67	Pseudomonas_phage	2.4e-104	44.2
WP_002208855.1\|771201_771570_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002208854.1\|771571_771871_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_012413586.1\|771991_773485_+	hypothetical protein	NA	NA	NA	NA
WP_002208852.1\|773751_775158_+	hypothetical protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_012413587.1\|775154_776210_+\|tail	tail protein	A0A2I7S9G1	Vibrio_phage	1.8e-37	27.2
WP_002215460.1\|776225_776822_+\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_002208848.1\|776818_777274_+	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_012413588.1\|777277_778414_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	6.5e-30	30.3
WP_011192006.1\|778410_779013_+	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	2.0e-33	38.6
WP_002208845.1\|779109_779889_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	7.1e-52	52.4

DBSCAN-SWA_2

985815 : 1052470

uncultured_Caudovirales_phage(25.0%)

protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012413614.1\|985815_986274_+\|transposase	IS200/IS605-like element IS1541B family transposase	I4AZI8	Saccharomonospora_phage	2.1e-11	30.7
WP_012413615.1\|986389_987664_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_002211286.1\|987909_988098_+	hypothetical protein	NA	NA	NA	NA
WP_002220006.1\|988363_988882_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_002224683.1\|988950_990702_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_002226586.1\|990912_991368_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_002213066.1\|991473_992535_-	porin OmpA	NA	NA	NA	NA
WP_002213065.1\|992892_993399_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_012413616.1\|993627_994263_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_011192070.1\|994364_996503_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_011192071.1\|996532_996979_-	YccF domain-containing protein	NA	NA	NA	NA
WP_011192072.1\|997172_999227_+	DNA helicase IV	A7KV33	Bacillus_phage	5.7e-16	25.8
WP_002213060.1\|999287_999752_-	methylglyoxal synthase	NA	NA	NA	NA
WP_002213058.1\|999930_1000611_-	DUF2057 family protein	NA	NA	NA	NA
WP_002213056.1\|1000926_1001343_+	CoA-binding protein	NA	NA	NA	NA
WP_002213054.1\|1001451_1001769_-	heat shock protein HspQ	NA	NA	NA	NA
WP_002213052.1\|1001829_1003020_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	W6LLI2	Streptococcus_phage	2.1e-26	28.1
WP_002213049.1\|1003113_1003392_+	acylphosphatase	NA	NA	NA	NA
WP_002213046.1\|1003443_1003773_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_011192073.1\|1007096_1009514_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002213038.1\|1009667_1010414_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.3e-14	31.4
WP_002213036.1\|1011144_1011363_+	hypothetical protein	NA	NA	NA	NA
WP_002213034.1\|1011626_1012151_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_011192074.1\|1012140_1013424_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_012105362.1\|1013425_1014163_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002213028.1\|1014178_1015417_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_002213026.1\|1015409_1016129_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_002213025.1\|1016130_1016883_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_002213024.1\|1016885_1017674_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002228570.1\|1017760_1018201_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_002213017.1\|1018238_1018487_+	acyl carrier protein	NA	NA	NA	NA
WP_002213016.1\|1018585_1019434_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_002211662.1\|1020396_1020897_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_011192076.1\|1020939_1022490_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011192077.1\|1022501_1023854_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011192078.1\|1023850_1024537_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012413620.1\|1024536_1026282_+	OmpA family protein	NA	NA	NA	NA
WP_002210014.1\|1026285_1026777_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_012413621.1\|1027164_1029813_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.3e-93	31.1
WP_012413622.1\|1029809_1032308_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.8e-17	32.5
WP_011192081.1\|1032425_1033697_+	hypothetical protein	NA	NA	NA	NA
WP_032467135.1\|1033700_1034096_+	hypothetical protein	NA	NA	NA	NA
WP_012413624.1\|1034411_1037114_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.2e-17	32.5
WP_011192084.1\|1037116_1037533_+	DUF4431 domain-containing protein	NA	NA	NA	NA
WP_011192085.1\|1037541_1039290_+	TIGR02594 family protein	A0A1U9ZAE8	Proteus_phage	9.8e-09	29.0
WP_011192086.1\|1039294_1039807_+	hypothetical protein	NA	NA	NA	NA
WP_012413625.1\|1040586_1041819_+	hypothetical protein	NA	NA	NA	NA
WP_011192088.1\|1041815_1045238_+	type VI secretion system membrane subunit	NA	NA	NA	NA
WP_011192089.1\|1045281_1046883_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_011192090.1\|1046900_1047959_+	hypothetical protein	NA	NA	NA	NA
WP_002211939.1\|1047973_1048429_+	hypothetical protein	NA	NA	NA	NA
WP_011192091.1\|1048649_1050413_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012413626.1\|1050376_1051462_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012105342.1\|1051436_1052018_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_011192093.1\|1052017_1052470_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

1345099 : 1397715

Salmonella_phage(40.54%)

plate,lysis,tail,holin,integrase,capsid,head,transposase,portal

attL 1349411:1349426|attR 1407796:1407811

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012105206.1\|1345099_1345315_-	phage transcriptional activator, Ogr/Delta	S4TNZ3	Salmonella_phage	1.1e-18	60.6
WP_011192293.1\|1345389_1346484_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.9e-127	65.7
WP_012413670.1\|1346480_1346945_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.2e-43	56.2
WP_012413671.1\|1346956_1349872_-\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	2.6e-155	52.8
1349411:1349426	attL	NA	NA	NA	NA
WP_071819140.1\|1349864_1349984_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_011192297.1\|1349998_1350346_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.6e-18	51.6
WP_011192298.1\|1350399_1350915_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.5e-61	66.3
WP_011192299.1\|1350926_1352102_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.3e-179	79.8
WP_011192300.1\|1352235_1352715_-\|tail	phage tail protein	F1BUP0	Erwinia_phage	1.2e-28	41.9
WP_012413672.1\|1352726_1354166_-	hypothetical protein	F1BUP1	Erwinia_phage	2.2e-75	77.8
WP_011192302.1\|1354162_1354771_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.7e-85	75.0
WP_011192303.1\|1354763_1355672_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.3e-118	73.2
WP_011192304.1\|1355674_1356028_-\|plate	baseplate assembly protein	A0A218M4K8	Erwinia_phage	2.4e-31	59.3
WP_011192305.1\|1356024_1356660_-\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	1.3e-64	62.0
WP_012413673.1\|1356888_1357368_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_012413674.1\|1357378_1358044_+	hypothetical protein	NA	NA	NA	NA
WP_012413676.1\|1358237_1358684_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-34	51.4
WP_011192308.1\|1358680_1359148_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.8e-42	57.2
WP_072083431.1\|1359134_1359359_-	hypothetical protein	NA	NA	NA	NA
WP_012304190.1\|1359246_1359669_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	4.9e-23	48.6
WP_012304189.1\|1359673_1360069_-	M15 family metallopeptidase	A9DET4	Yersinia_phage	1.2e-47	71.0
WP_011192311.1\|1360055_1360442_-\|holin	holin	NA	NA	NA	NA
WP_011192312.1\|1360471_1360675_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.8e-23	70.1
WP_012413677.1\|1360674_1361166_-\|head	head completion/stabilization protein	A0A1S5NNA6	Burkholderia_phage	3.3e-31	50.3
WP_012413678.1\|1361400_1362054_-	hypothetical protein	F1BUQ7	Erwinia_phage	7.8e-44	47.7
WP_012413679.1\|1362060_1363116_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.9e-124	62.8
WP_012413680.1\|1363152_1363968_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	1.3e-75	71.1
WP_012413681.1\|1364138_1365902_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	4.0e-228	63.7
WP_012413682.1\|1365901_1366939_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.5e-129	62.7
WP_012413683.1\|1367046_1367325_+	hypothetical protein	NA	NA	NA	NA
WP_012413685.1\|1368015_1368360_-	hypothetical protein	H9C172	Pectobacterium_phage	5.0e-18	40.7
WP_012413686.1\|1368356_1368587_-	hypothetical protein	NA	NA	NA	NA
WP_012413687.1\|1368567_1371123_-	replication endonuclease	E5G6L9	Salmonella_phage	7.1e-125	35.8
WP_012413688.1\|1371119_1371983_-	DNA cytosine methyltransferase	W0LM09	Edwardsiella_phage	1.2e-105	59.7
WP_012413689.1\|1371979_1372798_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L011	Salmonella_phage	7.4e-76	55.5
WP_012304179.1\|1372794_1373448_-	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	1.5e-55	61.2
WP_012304178.1\|1373504_1374266_-	hypothetical protein	K7ZRM8	Xanthomonas_citri_phage	1.9e-09	49.3
WP_012304177.1\|1374348_1374654_-	hypothetical protein	NA	NA	NA	NA
WP_012304176.1\|1374684_1374945_-	hypothetical protein	NA	NA	NA	NA
WP_012304174.1\|1375086_1375401_-	hypothetical protein	NA	NA	NA	NA
WP_012304173.1\|1375397_1375604_-	hypothetical protein	NA	NA	NA	NA
WP_012304172.1\|1375615_1375819_-	hypothetical protein	U3PFJ1	Vibrio_phage	9.8e-06	41.1
WP_012304171.1\|1375831_1376023_-	hypothetical protein	NA	NA	NA	NA
WP_011192328.1\|1376083_1376452_+	helix-turn-helix domain-containing protein	A0A2H4JFL3	uncultured_Caudovirales_phage	5.2e-13	39.8
WP_011192329.1\|1376472_1378170_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	9.0e-76	62.5
WP_011192331.1\|1378678_1379059_+	hypothetical protein	NA	NA	NA	NA
WP_012413690.1\|1380372_1380597_-\|integrase	integrase	K7PLZ2	Enterobacterial_phage	6.6e-19	76.8
WP_002215401.1\|1381155_1381383_+	replicative DNA helicase	A0A192Y673	Salmonella_phage	2.1e-12	57.7
WP_002213223.1\|1382507_1382690_+	hypothetical protein	NA	NA	NA	NA
WP_011192335.1\|1383050_1383395_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_086025313.1\|1383614_1385128_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012413696.1\|1386084_1387353_+	MFS transporter	NA	NA	NA	NA
WP_011192338.1\|1387349_1389083_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011192339.1\|1389072_1389798_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011192340.1\|1389785_1390640_+	hypothetical protein	NA	NA	NA	NA
WP_012413697.1\|1390639_1391437_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011192342.1\|1391433_1392600_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_011192343.1\|1392574_1393132_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002215413.1\|1396860_1397148_-	hypothetical protein	NA	NA	NA	NA
WP_002213212.1\|1397164_1397464_-	lysozyme	A0A218M4K8	Erwinia_phage	2.6e-23	64.9
WP_032467055.1\|1397460_1397715_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	3.1e-17	61.1
1407796:1407811	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2841351 : 2928459

Cronobacter_phage(40.54%)

tail,holin,protease,tRNA,integrase,capsid,head,terminase,portal

attL 2852382:2852397|attR 2905670:2905685

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012413886.1\|2841351_2843643_+	DNA primase	Q7M2A8	Enterobacteria_phage	1.1e-153	40.6
WP_002209924.1\|2844042_2844441_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_011192920.1\|2844900_2845263_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002214785.1\|2845325_2845586_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	7.4e-06	36.0
WP_002209928.1\|2846183_2846369_+	hypothetical protein	NA	NA	NA	NA
WP_012413889.1\|2846510_2847494_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	2.6e-112	59.9
WP_012413890.1\|2847560_2847860_-	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	6.7e-27	59.6
WP_011192923.1\|2847973_2848246_+	hypothetical protein	Q1JS60	Enterobacteria_phage	8.8e-34	68.9
WP_012413891.1\|2848242_2848455_+	hypothetical protein	NA	NA	NA	NA
WP_012413893.1\|2848829_2849174_+	hypothetical protein	NA	NA	NA	NA
WP_012413894.1\|2849177_2849381_-	hypothetical protein	NA	NA	NA	NA
WP_012413895.1\|2849523_2849745_+	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_012413896.1\|2849753_2850104_+	DUF5347 family protein	NA	NA	NA	NA
WP_012413897.1\|2850175_2850412_+	hypothetical protein	NA	NA	NA	NA
WP_012413898.1\|2850411_2851077_+	DUF3850 domain-containing protein	A0A1S6KVH3	Escherichia_phage	1.6e-12	52.7
WP_011192928.1\|2851086_2851788_+	3'-5' exonuclease	A2I2Z6	Vibrio_virus	8.6e-49	52.7
WP_012413900.1\|2852134_2854630_+	replication endonuclease	E5G6L9	Salmonella_phage	2.5e-175	43.3
2852382:2852397	attL	NA	NA	NA	NA
WP_012413901.1\|2854645_2854975_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_071819120.1\|2854978_2856076_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	3.7e-123	61.5
WP_012413904.1\|2858111_2859047_+\|capsid	phage capsid scaffolding protein	A5X9H4	Aeromonas_virus	3.5e-37	54.3
WP_012413905.1\|2859129_2860296_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	6.2e-84	50.3
WP_012413906.1\|2860310_2861054_+\|terminase	terminase	F1BUM0	Cronobacter_phage	2.6e-64	53.2
WP_012303715.1\|2861173_2861626_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.8e-37	52.7
WP_012413907.1\|2861622_2862129_+	hypothetical protein	F1BUL7	Cronobacter_phage	4.6e-20	38.9
WP_012303713.1\|2862088_2862790_+	hypothetical protein	F1BUL6	Cronobacter_phage	3.3e-40	43.8
WP_012413908.1\|2862786_2863953_+	DUF2586 family protein	F1BUL5	Cronobacter_phage	2.5e-101	52.2
WP_011192940.1\|2863955_2864411_+	DUF2597 family protein	A5X9I1	Aeromonas_virus	7.0e-44	58.3
WP_012413909.1\|2864420_2864723_+\|holin	holin	C7BGD7	Burkholderia_phage	1.7e-09	39.3
WP_012413910.1\|2864719_2865061_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-42	78.2
WP_012413911.1\|2865060_2865435_+	hypothetical protein	F1BUL2	Cronobacter_phage	3.2e-10	40.2
WP_011192944.1\|2865549_2865825_+	hypothetical protein	NA	NA	NA	NA
WP_012413912.1\|2865869_2866049_+	hypothetical protein	NA	NA	NA	NA
WP_012413913.1\|2866050_2868027_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.3e-131	41.3
WP_012413914.1\|2868023_2868353_+	DUF2590 family protein	Q94MY3	Haemophilus_virus	7.9e-29	61.3
WP_011192947.1\|2868349_2869534_+	hypothetical protein	F1BUK6	Cronobacter_phage	3.9e-134	59.3
WP_011192948.1\|2869526_2870150_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.2e-57	57.9
WP_012413915.1\|2870159_2871755_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	1.4e-54	39.9
WP_012413916.1\|2871754_2872273_+\|tail	tail assembly chaperone	A9DEL3	Yersinia_phage	8.3e-41	50.0
WP_042592930.1\|2872269_2872980_+	hypothetical protein	Q94MX8	Haemophilus_virus	1.9e-11	26.3
WP_012303705.1\|2872972_2873527_+	hypothetical protein	F1BUJ9	Cronobacter_phage	1.0e-36	51.1
WP_012413918.1\|2873523_2875245_+	hypothetical protein	F1BUJ7	Cronobacter_phage	5.8e-123	48.5
WP_011192954.1\|2876067_2877282_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	3.7e-132	58.8
WP_002209930.1\|2877714_2879232_-\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.1e-85	37.0
WP_002228062.1\|2879241_2880340_-	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	5.4e-05	39.0
WP_012413920.1\|2880518_2882252_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	9.5e-65	29.8
WP_012413921.1\|2882258_2882975_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA
WP_002209933.1\|2883005_2883905_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	8.5e-33	29.7
WP_002209934.1\|2884011_2884530_+	flavodoxin FldB	NA	NA	NA	NA
WP_032466588.1\|2884614_2886072_-	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_012413923.1\|2886192_2887611_-	two-component system sensor histidine kinase CreC	NA	NA	NA	NA
WP_002209937.1\|2887635_2888334_-	two-component system response regulator CreB	NA	NA	NA	NA
WP_012104676.1\|2888333_2888759_-	membrane protein	NA	NA	NA	NA
WP_002209939.1\|2888739_2889006_-	FAD assembly factor SdhE	NA	NA	NA	NA
WP_012413924.1\|2889322_2890315_+\|tRNA	tRNA-modifying protein YgfZ	NA	NA	NA	NA
WP_002209941.1\|2890387_2890885_-	DUF2165 family protein	NA	NA	NA	NA
WP_012413925.1\|2891159_2891861_-	hemolysin III family protein	NA	NA	NA	NA
WP_012413926.1\|2892062_2893166_-	hypothetical protein	NA	NA	NA	NA
WP_012413927.1\|2893269_2895420_-	autotransporter adhesin YapN	NA	NA	NA	NA
WP_002209946.1\|2896478_2896916_-	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_002209947.1\|2897293_2900173_-	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.7e-268	52.3
WP_002209948.1\|2900384_2900771_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_002209949.1\|2900839_2901937_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_012104673.1\|2902634_2903855_-	FAD-dependent 2-octaprenylphenol hydroxylase	NA	NA	NA	NA
WP_002209951.1\|2904027_2905206_-	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_012413930.1\|2905257_2906571_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA
2905670:2905685	attR	NA	NA	NA	NA
WP_002209953.1\|2906658_2907237_-	YecA family protein	NA	NA	NA	NA
WP_002209954.1\|2907573_2907903_+	cell division protein ZapA	NA	NA	NA	NA
WP_012413931.1\|2908248_2908845_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_002209956.1\|2909109_2910351_-	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	2.1e-98	46.5
WP_002209957.1\|2910657_2911314_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_002209958.1\|2911655_2912564_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_011192966.1\|2912574_2913354_-	oxidative stress defense protein	NA	NA	NA	NA
WP_002209960.1\|2913543_2914161_-	arginine exporter ArgO	NA	NA	NA	NA
WP_002209961.1\|2914423_2915293_-	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA
WP_012413932.1\|2915730_2916810_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_002209963.1\|2916929_2918093_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_002209964.1\|2918195_2919212_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_011192968.1\|2919608_2921603_-	transketolase	NA	NA	NA	NA
WP_011192969.1\|2922076_2922829_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_002209968.1\|2922933_2923254_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_002209969.1\|2923413_2925393_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002209971.1\|2926599_2927754_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_011192970.1\|2927946_2928459_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_5

3212154 : 3244549

Cronobacter_phage(78.57%)

tail,holin,tRNA,capsid,head,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002212201.1\|3212154_3213168_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.5e-106	57.7
WP_001144069.1\|3213580_3213796_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_002210358.1\|3213931_3215680_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.7e-74	38.2
WP_002210359.1\|3215837_3217676_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_012414004.1\|3218117_3218948_+	abortive infection family protein	NA	NA	NA	NA
WP_012414005.1\|3219080_3219278_-	hypothetical protein	NA	NA	NA	NA
WP_012414006.1\|3219453_3221109_-	hypothetical protein	F1BUJ7	Cronobacter_phage	1.1e-166	52.8
WP_012303700.1\|3221105_3221654_-	hypothetical protein	F1BUJ9	Cronobacter_phage	6.3e-55	63.7
WP_012414007.1\|3221619_3222351_-	hypothetical protein	F1BUK1	Cronobacter_phage	9.9e-40	39.6
WP_049772382.1\|3222340_3222748_-\|tail	tail assembly chaperone	NA	NA	NA	NA
WP_012414010.1\|3224433_3225069_-	hypothetical protein	F1BUK5	Cronobacter_phage	5.9e-57	56.9
WP_012303695.1\|3225061_3226246_-	hypothetical protein	F1BUK6	Cronobacter_phage	2.3e-150	65.7
WP_012303694.1\|3226238_3226571_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	1.5e-35	68.3
WP_012414011.1\|3226570_3228547_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.0e-172	48.5
WP_012303692.1\|3228734_3229001_-	hypothetical protein	A5X9I7	Aeromonas_virus	1.0e-18	54.9
WP_012303691.1\|3229150_3229492_-	hypothetical protein	F1BUL2	Cronobacter_phage	6.3e-13	40.9
WP_024063639.1\|3229491_3229833_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	1.5e-43	82.2
WP_012303689.1\|3229829_3230120_-\|holin	holin	Q6K1I2	Salmonella_virus	2.2e-14	52.8
WP_012303688.1\|3230129_3230582_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	2.4e-44	59.5
WP_012414012.1\|3230578_3231718_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	3.0e-136	65.7
WP_032467120.1\|3231744_3232419_-	hypothetical protein	F1BUL6	Cronobacter_phage	2.8e-81	68.2
WP_012414014.1\|3232418_3232907_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	1.5e-31	41.8
WP_012414015.1\|3232903_3233356_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	5.2e-39	56.7
WP_012414016.1\|3233451_3234150_-\|terminase	terminase	F1BUM0	Cronobacter_phage	2.5e-64	52.6
WP_012414017.1\|3234160_3235192_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	2.1e-144	76.1
WP_012414018.1\|3235246_3236101_-\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	1.1e-66	48.8
WP_012414019.1\|3236267_3238055_+	hypothetical protein	F1BUM5	Cronobacter_phage	1.5e-235	66.4
WP_106439437.1\|3238102_3239074_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.9e-139	69.5
WP_012414021.1\|3239124_3239391_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	3.6e-32	68.2
WP_012414022.1\|3239686_3241774_-	replication endonuclease	F1BUM9	Cronobacter_phage	8.1e-228	61.0
WP_012414023.1\|3241770_3242010_-	DUF2732 family protein	NA	NA	NA	NA
WP_012414024.1\|3242088_3242496_-	hypothetical protein	NA	NA	NA	NA
WP_012414025.1\|3242505_3242880_-	hypothetical protein	NA	NA	NA	NA
WP_012414026.1\|3242882_3243086_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_012414027.1\|3243093_3243603_-	hypothetical protein	A0A1S6L008	Salmonella_phage	2.4e-40	51.8
WP_012414028.1\|3243634_3243856_-	hypothetical protein	NA	NA	NA	NA
WP_012414029.1\|3243970_3244549_+	phage repressor protein	F1BUN8	Cronobacter_phage	2.1e-29	32.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009779

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4235 : 27626

Enterobacteria_phage(50.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011191374.1\|4235_5204_-\|protease	T3SS effector cysteine protease YopT	NA	NA	NA	NA
WP_011191373.1\|5703_6252_+	hypothetical protein	NA	NA	NA	NA
WP_071819182.1\|6849_7479_+	conjugal transfer protein TraT	NA	NA	NA	NA
WP_002220902.1\|9492_10659_+	plasmid-partitioning protein SopA	Q7Y3Y6	Yersinia_phage	3.5e-196	85.3
WP_002213354.1\|10655_11621_+	ParB/RepB/Spo0J family plasmid partition protein	Q7Y3Y7	Yersinia_phage	3.1e-89	56.6
WP_155759211.1\|11780_12197_+	hypothetical protein	NA	NA	NA	NA
WP_012414146.1\|13061_13304_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_002213360.1\|13296_13596_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002229754.1\|13735_14395_-	type III secretion system effector GTPase activator YopE	NA	NA	NA	NA
WP_002213403.1\|14588_14981_+	YopE transcriptional regulator YerA	NA	NA	NA	NA
WP_011191364.1\|15595_16768_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.8e-221	95.6
WP_002213267.1\|17540_17966_+	type III secretion system chaperone SycH	NA	NA	NA	NA
WP_086025330.1\|18113_19213_-\|transposase	IS3-like element ISYps8 family transposase	S5WIU1	Leptospira_phage	5.7e-47	39.3
WP_002229829.1\|19312_19642_-	hypothetical protein	NA	NA	NA	NA
WP_012414143.1\|19780_20245_-	hypothetical protein	NA	NA	NA	NA
WP_002213258.1\|20263_20815_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	5.9e-77	80.3
WP_002213256.1\|20978_23294_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.0e-279	51.6
WP_011191362.1\|24279_25578_+	trimeric autotransporter adhesin YadA	Q9MCI8	Enterobacteria_phage	2.0e-11	54.2
WP_106461760.1\|25580_25880_-	hypothetical protein	NA	NA	NA	NA
WP_042469136.1\|25906_26176_-\|transposase	transposase	NA	NA	NA	NA
WP_002213246.1\|26244_26703_+	hypothetical protein	NA	NA	NA	NA
WP_002213244.1\|26874_27192_+\|transposase	transposase	NA	NA	NA	NA
WP_012414142.1\|27218_27626_+\|transposase	transposase	S5FNT8	Shigella_phage	4.4e-21	42.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009780

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009779

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection