CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009841	Yersinia pestis A1122 plasmid pMT, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP009839	Yersinia pestis A1122 plasmid pPCP, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP009840	Yersinia pestis A1122 chromosome 1, complete sequence	5 crisprs	DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3,DinG	4	9	15	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13258 : 94348

Salmonella_phage(87.5%)

integrase,terminase,transposase,tail

attL 19430:19444|attR 45293:45307

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002215065.1\|13258_14200_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.0e-68	54.8
WP_002211756.1\|14222_14498_-	hypothetical protein	NA	NA	NA	NA
WP_002211757.1\|15237_15726_+	phospholipase D family protein	NA	NA	NA	NA
WP_002211758.1\|15803_17567_+	phospholipase D	NA	NA	NA	NA
19430:19444	attL	NA	NA	NA	NA
WP_002211760.1\|19642_20665_-\|transposase	IS110-like element IS1618 family transposase	NA	NA	NA	NA
WP_002209743.1\|21133_22342_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211761.1\|22690_23596_-	F1 operon transcriptional regulator Caf1R	NA	NA	NA	NA
WP_002211762.1\|23923_24700_+	F1 capsule chaperone Caf1M	NA	NA	NA	NA
WP_002211763.1\|24724_27226_+	F1 capsule-anchoring usher protein Caf1A	NA	NA	NA	NA
WP_002216410.1\|27306_27819_+	F1 capsule protein Caf1	NA	NA	NA	NA
WP_002353208.1\|28578_29682_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	5.2e-24	30.9
WP_002228802.1\|29676_30063_-	hypothetical protein	NA	NA	NA	NA
WP_002228800.1\|30325_30538_+	hypothetical protein	NA	NA	NA	NA
WP_002211766.1\|30647_33014_+	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	94.4
WP_002211767.1\|33110_34346_+	AAA family ATPase	J9Q733	Salmonella_phage	3.0e-238	99.3
WP_000255944.1\|37653_38676_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|38675_39455_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002211769.1\|39588_40197_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.8e-64	62.2
WP_002211770.1\|40498_43387_-\|tail	phage tail protein	J9Q6E3	Salmonella_phage	4.5e-11	33.1
WP_002211771.1\|43467_44046_-	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	3.4e-27	38.8
WP_002214118.1\|44102_48734_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	88.6
45293:45307	attR	NA	NA	NA	NA
WP_002211773.1\|48755_49343_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	5.1e-103	92.8
WP_002211774.1\|49330_50128_-	C40 family peptidase	J9Q7R4	Salmonella_phage	1.4e-156	96.2
WP_002211775.1\|50120_50819_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	7.1e-136	99.1
WP_000440566.1\|50908_51244_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_002211776.1\|51285_55863_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	90.5
WP_000952684.1\|55870_56095_-	hypothetical protein	J9Q7F7	Salmonella_phage	4.2e-34	100.0
WP_000163862.1\|56220_56538_-	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_002211778.1\|56597_57344_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	5.2e-129	98.8
WP_002211779.1\|57418_57802_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.1e-66	98.4
WP_002211780.1\|57803_58277_-	hypothetical protein	J9Q711	Salmonella_phage	8.9e-82	99.4
WP_001027662.1\|58267_58612_-	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_002211781.1\|58709_59543_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.9e-152	99.6
WP_002211782.1\|59542_59977_-	hypothetical protein	J9Q7Y3	Salmonella_phage	3.1e-73	99.3
WP_002211783.1\|60020_60683_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	8.5e-107	97.2
WP_002211784.1\|60757_61633_-	hypothetical protein	J9Q710	Salmonella_phage	8.5e-163	99.7
WP_002211785.1\|61659_62493_-	hypothetical protein	J9Q7F4	Salmonella_phage	5.8e-137	91.3
WP_002211786.1\|62515_64090_-	hypothetical protein	J9Q7R1	Salmonella_phage	2.4e-301	99.2
WP_002211787.1\|64123_65380_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_002211788.1\|65382_66024_-	hypothetical protein	J9Q6D4	Salmonella_phage	1.2e-108	98.1
WP_000176291.1\|66219_66486_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_002211789.1\|66495_67386_-	hypothetical protein	J9Q7I6	Salmonella_phage	6.2e-169	99.7
WP_002211790.1\|67391_67646_-	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	97.6
WP_002211791.1\|67638_68277_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	4.7e-110	98.1
WP_002211792.1\|68273_68942_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	9.5e-114	98.2
WP_002228791.1\|68941_69640_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	9.6e-125	98.7
WP_002211794.1\|69704_71264_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	1.1e-293	99.0
WP_002214131.1\|71266_71545_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.4e-41	97.8
WP_002211796.1\|71604_72027_+	hypothetical protein	J9Q806	Salmonella_phage	4.1e-62	85.0
WP_002214134.1\|72031_72559_+	transcriptional regulator	J9Q6L0	Salmonella_phage	6.4e-81	98.0
WP_002211799.1\|72880_73531_+	hypothetical protein	J9Q754	Salmonella_phage	4.1e-114	99.5
WP_002214137.1\|73615_73843_+	hypothetical protein	NA	NA	NA	NA
WP_002211801.1\|74481_74964_-	hypothetical protein	J9Q805	Salmonella_phage	5.1e-85	94.4
WP_002211802.1\|75169_75451_-	hypothetical protein	J9Q753	Salmonella_phage	6.1e-46	93.5
WP_002213759.1\|75650_76109_-\|transposase	IS200/IS605-like element IS1541A family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002214145.1\|76317_76887_-	hypothetical protein	J9Q7Z7	Salmonella_phage	5.8e-104	100.0
WP_002213303.1\|76899_77646_-	hypothetical protein	J9Q6J5	Salmonella_phage	4.1e-134	96.4
WP_002214148.1\|77635_79552_-	AAA family ATPase	J9Q741	Salmonella_phage	0.0e+00	98.6
WP_002213300.1\|79781_80867_-	metallophosphoesterase	J9Q7S9	Salmonella_phage	7.7e-206	98.6
WP_002214154.1\|81015_81204_+	hypothetical protein	NA	NA	NA	NA
WP_002213298.1\|81282_82305_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002214160.1\|82664_83309_-	hypothetical protein	J9Q739	Salmonella_phage	1.8e-122	98.1
WP_002214164.1\|84053_85118_+	replication protein RepA	J9Q7H0	Salmonella_phage	2.4e-188	98.6
WP_002222711.1\|85686_85899_-	hypothetical protein	J9Q7S8	Salmonella_phage	6.8e-34	95.7
WP_002227818.1\|85898_86234_-	hypothetical protein	J9Q7Z5	Salmonella_phage	5.2e-52	91.0
WP_002228796.1\|86230_86410_-	hypothetical protein	J9Q6J1	Salmonella_phage	5.8e-18	86.4
WP_002228797.1\|86450_86726_-	hypothetical protein	J9Q738	Salmonella_phage	1.7e-45	95.6
WP_002222869.1\|86793_87204_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.1e-75	97.8
WP_002222868.1\|87187_87559_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	4.0e-61	87.8
WP_002222866.1\|87712_88543_-	hypothetical protein	J9Q7Z4	Salmonella_phage	9.3e-127	98.6
WP_002213439.1\|88546_88747_-	hypothetical protein	J9Q6J0	Salmonella_phage	1.1e-25	97.0
WP_000920226.1\|89916_90183_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_002225551.1\|90182_91127_-	exonuclease	J9Q7S6	Salmonella_phage	1.3e-180	99.0
WP_002213132.1\|91187_92216_-	hypothetical protein	J9Q7Z3	Salmonella_phage	1.3e-165	98.5
WP_002213135.1\|92335_92767_-	hypothetical protein	J9Q6I8	Salmonella_phage	2.6e-72	98.6
WP_002215095.1\|92987_93239_+	hypothetical protein	NA	NA	NA	NA
WP_002213141.1\|93311_93875_+	DNA-binding protein	J9Q7G7	Salmonella_phage	2.2e-63	64.6
WP_002213143.1\|93904_94348_-	hypothetical protein	J9Q7S4	Salmonella_phage	7.8e-72	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009840

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009840_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009840_1

545744-546252

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

8 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP009840_1

>merge|NZ_CP009840|1|545744-546252|CRISPRCasFinder,CRT,PILER-CR
TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCTGCCTGTGCGGCAGTGAACGAAAAGGTAAGATGGGCAAGCTTCTAGTAGTTTTTCTAAGCTGCCTGTGCAGCAGTGAACATTATCTGAATGGCATTTTCTTTGGCGCAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGCCATTCCGTGAACCTGAGCGCGTTCGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACATATTCTCGAGCGATAGCAATAGCCATTCCACTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGGTCAAACAAATTTAGGCGACGATTTAACATTTCTAAGCTGCCTGTGCGGCAGTGAACAAAAAGAATTTGGGATTAAAGTTACCCATCAGTTTCTAAGCTGCCTGTGCGGCAGTGAACTCAATGCCTGAATCTCTGGCGTGATAGCTGCGGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009840|1|1|545744-546252|CRISPRCasFinder
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTCTCGAGCGATAGCAATAGCCATTCCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGGTCAAACAAATTTAGGCGACGATTTAACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAAGAATTTGGGATTAAAGTTACCCATCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAATGCCTGAATCTCTGGCGTGATAGCTGCGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009840|1|1|545744-546252|CRT
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTCTCGAGCGATAGCAATAGCCATTCCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGGTCAAACAAATTTAGGCGACGATTTAACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAAGAATTTGGGATTAAAGTTACCCATCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAATGCCTGAATCTCTGGCGTGATAGCTGCGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009840|1|1|545804-546252|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATTCTCGAGCGATAGCAATAGCCATTCCAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGGTCAAACAAATTTAGGCGACGATTTAACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAAGAATTTGGGATTAAAGTTACCCATCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAATGCCTGAATCTCTGGCGTGATAGCTGCGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009840.1\|WP_002210194.1\|549729_550845_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009840.1\|WP_002221142.1\|541119_544407_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP009840.1\|WP_002210198.1\|553959_554835_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009840.1\|WP_002222491.1\|539365_540712_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP009840.1\|WP_002216551.1\|533482_533692_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009840.1\|WP_002210192.1\|546589_547834_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP009840.1\|WP_002210199.1\|554943_556230_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP009840.1\|WP_002213840.1\|550967_551906_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NZ_CP009840.1\|WP_002210196.1\|551932_552988_-\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NZ_CP009840.1\|WP_002211865.1\|535734_536754_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NZ_CP009840.1\|WP_002210193.1\|548416_549691_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009840.1\|WP_002210201.1\|557558_558947_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NZ_CP009840.1\|WP_002211868.1\|538418_539369_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP009840.1\|WP_002210197.1\|553134_553959_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009840.1\|WP_002210191.1\|544403_545384_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP009840.1\|WP_002211867.1\|537396_538401_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP009840.1\|WP_002210200.1\|556501_557542_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NZ_CP009840.1\|WP_002211866.1\|536831_537386_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP009840.1\|WP_002211863.1\|533815_535174_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP009840.1\|WP_002211864.1\|535220_535724_+\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708

Protein	Function_ID	Function_description	E-value
NZ_CP009840.1\|WP_002210201.1\|557558_558947_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP009840.1\|WP_002221142.1\|541119_544407_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP009840.1\|WP_002210198.1\|553959_554835_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.26211e-58
NZ_CP009840.1\|WP_002222491.1\|539365_540712_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NZ_CP009840.1\|WP_002210192.1\|546589_547834_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.65074e-32
NZ_CP009840.1\|WP_002210199.1\|554943_556230_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.85244e-50
NZ_CP009840.1\|WP_002213840.1\|550967_551906_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	6.29599e-176
NZ_CP009840.1\|WP_002210196.1\|551932_552988_-\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	9.75278e-165
NZ_CP009840.1\|WP_002211865.1\|535734_536754_+\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	6.34333e-143
NZ_CP009840.1\|WP_002211868.1\|538418_539369_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	1.12008e-157
NZ_CP009840.1\|WP_002210197.1\|553134_553959_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NZ_CP009840.1\|WP_002210191.1\|544403_545384_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP009840.1\|WP_002211867.1\|537396_538401_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP009840.1\|WP_002210200.1\|556501_557542_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NZ_CP009840.1\|WP_002211866.1\|536831_537386_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NZ_CP009840.1\|WP_002211863.1\|533815_535174_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.50877e-50
NZ_CP009840.1\|WP_002211864.1\|535220_535724_+\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	1.50048e-90

>NZ_CP009840.1|WP_002210191.1|544403_545384_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILTRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NZ_CP009840.1|WP_002221142.1|541119_544407_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALNETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETTLMSNLVKDGLDDYTNPLAALPPLAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLVLMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDANAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPRGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQASGQPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKNGSVLDAMAAVMRDSMLRLHQAHHQTHPSEKTVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKDPAIPVYCKPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAAGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLPKKDGERWHYHPLLGVFGALD
>NZ_CP009840.1|WP_002222491.1|539365_540712_-|type-I-F-CRISPR-associated-protein-Csy1
MSDEGLAAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRQELIARYEVRNWLTDAANRAGQIKLATHAPKYTHSDSKSSGILNIELQSKKKDYFSSVDLAEQASDVIGNAAVFDLVKLLQSECEGGSLIKCLEQGDNSVLKLFSNDDELVEEWTTKFKSILNNEKFTSHKLAKQFYFPVGPDQYHLLSPLFSSSLAQAMHQRIIEARFSDQSKEAKAAHKAGRWHPTVRVLYLDTAVQHIGGTKPQNISYLNSVRGGKVWLLPCGAPSWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQLYLLGVKPLSNTMDIRAARLACCDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPTRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETSS
>NZ_CP009840.1|WP_002211868.1|538418_539369_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHYQQVHAYLSGWDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEVATRRLLCRLLPGFALLDRSELLAEHLNRLRQTNPQAEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NZ_CP009840.1|WP_002211867.1|537396_538401_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPAKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NZ_CP009840.1|WP_002211866.1|536831_537386_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NZ_CP009840.1|WP_002211865.1|535734_536754_+|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEEHFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NZ_CP009840.1|WP_002211864.1|535220_535724_+|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHYPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NZ_CP009840.1|WP_002211863.1|533815_535174_+|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NZ_CP009840.1|WP_002216551.1|533482_533692_-|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK
>NZ_CP009840.1|WP_002210192.1|546589_547834_+|mechanosensitive-ion-channel-family-protein
MQQRISQWLERLGMEFSDVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NZ_CP009840.1|WP_002210193.1|548416_549691_-|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NZ_CP009840.1|WP_002210194.1|549729_550845_-|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHVGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NZ_CP009840.1|WP_002213840.1|550967_551906_-|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFSEQQGQWAPVENAPTFQLQDPFFTRIEDELILGGVEINPHPDNPRQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTKNYTPIKIIAARDNFLPGATKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NZ_CP009840.1|WP_002210196.1|551932_552988_-|glycosidase
MMRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NZ_CP009840.1|WP_002210197.1|553134_553959_-|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NZ_CP009840.1|WP_002210198.1|553959_554835_-|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFIWLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFISSFLFAFGLQKLKHGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NZ_CP009840.1|WP_002210199.1|554943_556230_-|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIKEVNAILKP
>NZ_CP009840.1|WP_002210200.1|556501_557542_+|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NZ_CP009840.1|WP_002210201.1|557558_558947_+|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK

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Crispr_ID: NZ_CP009840_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009840_2

671729-672059

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

5 spacers

The CRISPR arrays of NZ_CP009840_2

>merge|NZ_CP009840|2|671729-672059|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAACCGGCGGTGATGGCAATTCTACGTGGGTTCGTTGTTCACTGCCGCACAGGCAGCTTAGAAACTGATACAATCATCCTATTTGTCCTATCCAGAAGTTCACTGCCGCACAGGCAGCTTAGAAAGACAAGAACCGAATCTTTCGCCGTGCCGTAAAGTTCACTGCCGCACAGGCAGCTTAGAAACCGAAATCATCAGATGTAATTAAGATTTTTGCTGTTCACTGCCGCACAGGCAGCTTAGAAAAGACTGATGCAAGATGGCGGTATGCGTACAGAGTTCACTGCCGCACAGGCAGCTTATAGA

>NZ_CP009840|2|2|671729-671999|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGGCGGTGATGGCAATTCTACGTGGGTTCGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTGATACAATCATCCTATTTGTCCTATCCAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GACAAGAACCGAATCTTTCGCCGTGCCGTAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGAAATCATCAGATGTAATTAAGATTTTTGCT
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP009840|2|2|671729-672059|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGGCGGTGATGGCAATTCTACGTGGGTTCGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTGATACAATCATCCTATTTGTCCTATCCAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GACAAGAACCGAATCTTTCGCCGTGCCGTAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGAAATCATCAGATGTAATTAAGATTTTTGCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACTGATGCAAGATGGCGGTATGCGTACAGA
GTTCACTGCCGCACAGGCAGCTTATAGA

>NZ_CP009840|2|2|671729-672059|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGGCGGTGATGGCAATTCTACGTGGGTTCGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTGATACAATCATCCTATTTGTCCTATCCAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GACAAGAACCGAATCTTTCGCCGTGCCGTAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGAAATCATCAGATGTAATTAAGATTTTTGCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACTGATGCAAGATGGCGGTATGCGTACAGA
GTTCACTGCCGCACAGGCAGCTTATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009840.1\|WP_002214718.1\|670819_671368_-\|DUF1440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226008
NZ_CP009840.1\|WP_002214721.1\|684852_685911_+\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP009840.1\|WP_002359655.1\|674783_676709_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|226471
NZ_CP009840.1\|WP_002210300.1\|678113_679043_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380623
NZ_CP009840.1\|WP_002210291.1\|661370_661814_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP009840.1\|WP_002265141.1\|657565_659704_+\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NZ_CP009840.1\|WP_002210297.1\|673222_674749_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP009840.1\|WP_002210287.1\|655303_655759_-\|DUF412-domain-containing-protein	unknown	unknown	gnl\|CDD\|179338
NZ_CP009840.1\|WP_002210286.1\|654501_654996_-\|YfbU-family-protein	unknown	unknown	gnl\|CDD\|180087
NZ_CP009840.1\|WP_002210288.1\|656180_657383_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP009840.1\|WP_002214717.1\|663499_664378_-\|transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273954
NZ_CP009840.1\|WP_002210293.1\|661982_662237_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP009840.1\|WP_002210303.1\|681702_682836_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP009840.1\|WP_002210296.1\|672062_672917_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP009840.1\|WP_002210301.1\|679091_680639_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009840.1\|WP_002216059.1\|659969_661004_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP009840.1\|WP_002425473.1\|682867_684838_+\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NZ_CP009840.1\|WP_002210302.1\|680650_681679_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009840.1\|WP_002210294.1\|664434_670413_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP009840.1\|WP_002210306.1\|685920_686736_+\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|226241

Protein	Function_ID	Function_description	E-value
NZ_CP009840.1\|WP_002214718.1\|670819_671368_-\|DUF1440-domain-containing-protein	gnl\|CDD\|226008	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown].	2.91652e-69
NZ_CP009840.1\|WP_002214721.1\|684852_685911_+\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	4.28689e-165
NZ_CP009840.1\|WP_002359655.1\|674783_676709_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|226471	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism].	0
NZ_CP009840.1\|WP_002210300.1\|678113_679043_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380623	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins. The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.	4.31227e-120
NZ_CP009840.1\|WP_002210291.1\|661370_661814_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.55185e-43
NZ_CP009840.1\|WP_002265141.1\|657565_659704_+\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NZ_CP009840.1\|WP_002210297.1\|673222_674749_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP009840.1\|WP_002210287.1\|655303_655759_-\|DUF412-domain-containing-protein	gnl\|CDD\|179338	PRK01816, PRK01816, hypothetical protein; Provisional.	1.1254e-94
NZ_CP009840.1\|WP_002210286.1\|654501_654996_-\|YfbU-family-protein	gnl\|CDD\|180087	PRK05445, PRK05445, YfbU family protein.	1.33949e-111
NZ_CP009840.1\|WP_002210288.1\|656180_657383_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP009840.1\|WP_002214717.1\|663499_664378_-\|transglycosylase-domain-containing-protein	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.09445e-118
NZ_CP009840.1\|WP_002210293.1\|661982_662237_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.4281e-27
NZ_CP009840.1\|WP_002210303.1\|681702_682836_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.07432e-69
NZ_CP009840.1\|WP_002210296.1\|672062_672917_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.17523e-68
NZ_CP009840.1\|WP_002210301.1\|679091_680639_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP009840.1\|WP_002216059.1\|659969_661004_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.95185e-89
NZ_CP009840.1\|WP_002425473.1\|682867_684838_+\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NZ_CP009840.1\|WP_002210302.1\|680650_681679_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.15893e-97
NZ_CP009840.1\|WP_002210294.1\|664434_670413_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP009840.1\|WP_002210306.1\|685920_686736_+\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|226241	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism].	3.14642e-169

>NZ_CP009840.1|WP_002214718.1|670819_671368_-|DUF1440-domain-containing-protein
MSEKRVNLQVIAWATIIGGFVSSLVKSGTEVNMPPRVVGEISPPAANIDAWLGWLGINSHSMDYVYQGVTISGTVVLYHWLFSFVFAFVYVLLSAYWPKVRLWYSAAYGLSITVAIHGVLIPALGFRHPAYLAGETGWLWNLNGYELWSEIIGHLCWSASLEICLVAVLAFFSKPIKGIWAN
>NZ_CP009840.1|WP_002210294.1|664434_670413_-|alpha-2-macroglobulin-family-protein
MDLLRFLLISPFALIKGLYRLSAYLLRLVGRLLRPVVGNLNWRAPQWMTKTANGLHCAFNRSEQWVAKHPKGISAAIVLLMAAASAAFYGYHWYLNRPQPIEPAPMVYQETSIRVSAPRTVNYQAQKPEAQPLSLNFMHSAAPITAMGQVVDQGISLTPAIEGEWKWATERTLVFTPKKAWPMGANYQITIDTEKLLAPQIKLNQTELNFTTPAFAYQLEKAEYYQDPQEAQKRSTIFHVQFNAPVDVASFEKQILLGLVEGKSKSEKKLNFSVVYDEKKLNAWIHSQPLMPMDKGGSVHLSINKGVNASVAATPTTQAQNKWVSVPNLYSLAVNSINATLVESDNNNGERALIIAISDAVKDKEIKNAVKAWLLPQHNFQAKESAKTSTDFYPWDMDDIDDNLLQQSTPLALTLNEAEQEYQPIFSFKFDAPSYRTLLIEVNNSLTSVGGYKMPEKIYQIVRVPDYPKTLRFMSQGSLLSMQGDKQISVAARNMTGMKLDIKRVIPSQLQHIVSFKSSEYSSAHFNRLSDEYFTEHFQYQTALNNDNPGEINYQGVDLSRYLANNPSARRGVFLLTLSAWDPEKRDNQQHSEEDYDEDQEWVGDSRFVVITDLGIITKQSQDRSRDVFVQSIHSGLPAADAKVSVVAKNGVVLLSQITDSKGHVHFPALDAFKNERQPVMFLVEKEGDVSFLPTRATYDRNLDFSRFDIDGEETPSDPRTLSSYLFSDRGVYRPGDRFNIGLITRTANWATALDGVPLRAEIRDPRDTLMSTLPITLDSSGFNELSYTTGENSPTGEWNVYLYLVGKNNETSMLLGHTTVNVKEFEPDRLKVQLQLTPERQQGWVKPQELQANINVQNLFGTPAQERRVTSRLILRPMYPSFAPFPDYLFYENRHNSDGFETELEEQTTDLQGMATIPLDLKSYADATYQLQLLSEAFEAGGGRSVAATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYISVLTKQDSGVYKYQSRLKEQLVSEQPLQISPTGTDFTLVTQQPGDFILVVKDSQGQVLNRISYTVAGNANLTRSLDRNTELKLKLNQAEYLQGEEIEIAINAPYAGSGLITIEKDKVYSWQWFHSDTTSSVQRIRIPPAMEGNGYINVQFVRDVNSDEIFMSPLSYGVMPFKISTKARQAAIELASPSVIKPGEVLPIKVTTDSPQRVVVFAVDEGILQVARYRLKDPLDYFFRKRELSVQSAQILDLILPEFSKLMALTSAPGGDAGEGLDLHLNPFKRKQDKPVAYWSGITEVNGETTFNYPIPDYFNGKIRVMAISATPDRIGKVQTSTTVRDNFILTPNVPAMVAPGDEFDVTVGVSNNLQGLKGKAVDITVRLTPPPQLEVVGEAQHSLSLAEKRETLVSFRLRARSALGDAPLVFDASYGSQSSRRTVSTSVRPAMPFRTQSVMGRMEGNKHTVTNLRQMFDNYAQRQATASHSPLVLTQGLARYLADYPYYSSEQIVSRSIPLIMQSKHPEMDSALNQNEVRDQLKNMLRILSSRQNSTGAIGLWHASPTPDPFVTPYVVQFLLEAKSAGYSLPNDILEGANNALRLLAARPYDDLYSLRLRAFAVYLLTLQGEITTNTLASVQSTLQQLYPDSWQTDLSAIYLASSYRLLKMDDEANKLLQPTWKQLGKAYSKAWWTQNYFDPLVQDATRLYLITRHFPEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQIIEISKSKGIDPNVISTLNGLFVQGDFTGEAKAIQFNNYASAPAWYVVNQSGYDLQPPKDAISNGLEISRSYTDEQGKPVTQVTLGQKVNVHLKIRANAKQGQNNLAIVDLLPGGFEVVQQTAPEPEFYDNQDDQDEETGSGWQSPLMVSGSSWYPDYSDIREDRVIIYGSASTDVKEFIYQIKSTNTGRFVVPPAYGEAMYDRNVQALSVGKGHILVVPPEAK
>NZ_CP009840.1|WP_002214717.1|663499_664378_-|transglycosylase-domain-containing-protein
MRIPTLMATKRLLQNILMALFLLALLVIGFRLWPHPPLSQGLPLSTAYYDRHGTLLRLSLANDDRYRLWTPLEEISPLVIQGIQLHEDRGFYYHPGVNPISLLRGFWQSYVQGGRQQGGSTLTMQLARMHWHLNTRSPTGKLRQIARAIQLELSYSKHDILEAYLNYAPYGRNIESIAAASLIYFDKKPQQLTLPEALTLAVLPQSPSYRIDPTTGVLGSALTQARNRLFVRWQQTYPTDSSQMALFQLPLSLRQPEKMPYIAPHFIEQIRRQNQQLANTRDCKQYCVIACF
>NZ_CP009840.1|WP_002210293.1|661982_662237_+|PTS-sugar-transporter-subunit-IIB
MKITVVCGNGLGTSLMMEISIKSILKELAVSAEVDHVDLGSAKGTPSDIFIGTKDIAEQLVAQAVGGKIVALDNMIDKKARACP
>NZ_CP009840.1|WP_002210291.1|661370_661814_+|PTS-sugar-transporter-subunit-IIA
MLKTLLTSDVIQVVSQAKDWRDAIAISCQPLIDNGAVEARYVEAIYRSHEAIGPYYVVGPGIAMPHARPEDGVNRLSLALTVITEGVTFNAEGNDPVKLLIVLAATDSNSHIEAISQLAQLFDTASDVQALLNAKTPQDILSVIARY
>NZ_CP009840.1|WP_002216059.1|659969_661004_-|LacI-family-DNA-binding-transcriptional-regulator
MEKIRKRRNTGRVTLQEVADYAGVGSMTVSRALRTPEQVSDKLREKIEQAVEKLGYIPNRAAGALASGHSDTVAVLIPSLTDKASSRFMQALQQILNKNEFQLLLGCHEYNQRKEAEILMTLLQSHPAAVVIFGSQLADKTYQILERTNIPIVNVVGSYFKGAKITLEAAFFESAYELTRHLLERGYQHIGYLGAHRDNQLQRQQLNGWHKSMLEHYKNADQTVTTPDAASLQFGRYALTEILLRQPELDAVICSHEDIALGVLFECQRRLLKIPSGIAVACLDGSESCDQTHPTLTSMRIDYKKMGKEAGKMLIDMLNEDDAGVKSVPLSQSFNYKFEPRQST
>NZ_CP009840.1|WP_002265141.1|657565_659704_+|phosphate-acetyltransferase
MLIPTGTSVGLTSVSLGVIRSMEQKGVSLSVFKPIAQPRAGNDAPDQTTTIIRANSSITAAEPLNMNYVETLLSSNQQDVLMEEIVARYHENTKDAEVVLVEGLVPTRKHQFANALNYEIAKTLNAEIVFVIALGNDSPDQLKERIELARSSFGGSKNKNITGVIINKLNAPVDEQGRTRPDLSEIFDDSTKASVANIDPSQLFANSPIPVLGCVPWSFELIATRAIDMAKHLNARIINEGDIKTRRVKSVTFCARSIPHMLEHFRPGSLLVTSADRPDVLVSACLAAMNGVEIGAILLTGGYAIDDRINNLCERAFQTGLPVFMVDTNTWQTSLSLQSFNLEVPADDHERVEKLQNYVASHISSEWIDSLTAASERPRRLSPPAFRYELTELARKAGKRIVLPEGDEPRTIKAASICAERGIATCVLLGNPEEIQRVATSQGVELGKGVEIIDPVAVREQYVPRLVELRKSKGMTEVVAREQLEDNVVLGTLMLEKGEVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPDQVLVYGDCAINPDPTAEQLSEIAIQSADSAAAFGIEPRVAMISYSTGNSGAGSDVEKVREATRLAQEKRPDLIIDGPLQYDAAIMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTVALTAIQSAQADSAAS
>NZ_CP009840.1|WP_002210288.1|656180_657383_+|acetate-kinase
MSSKLVLVLNCGSSSLKFAIIDATNGEEHISGLAECFHLPEARIKWKVDGGKQEAALGAGAAHSEALNFIVNTILAQKPALSAQLTAIGHRIVHGGEKFTSSVIVTEDVIQGIKDSIPFAPLHNPAHLIGIAEALKSFPNLADKNVAVFDTAFHQTMPEESYLYALPYSLYKDHGIRRYGAHGTSHFYVSQEAAKILNKPLEELNVITCHLGNGGSVTAVRNGKCVDTSMGLTPLEGLVMGTRSGDLDPAIIFHLHDAMGMSVDQINTLLTKESGLLGLTEVTSDCRYVEDNYATKADAKRAMDVFCHRLAKYIGSYTALMDGRLDAVVFTGGIGENAAMVRELTLDKLGLLGFEIDHERNMAARFGKSGTITKDSSRLALVIPTNEELVIAQDAARLTA
>NZ_CP009840.1|WP_002210287.1|655303_655759_-|DUF412-domain-containing-protein
MTIKPSDSVSWFQVLQRGQHYMKTWPADKRLAPVFPENRVTVVTRFGIRFMPPLAIFTLTWQIALGGQLGPAIATALFACGLPLQGLWWLGKRAITPLPPTLLQWFHEVRHKLFEAGQAVAPIEPIPTYQSLADLLKRAFKQLDKTFLDDL
>NZ_CP009840.1|WP_002210286.1|654501_654996_-|YfbU-family-protein
MDMTNAQRLILSNQYKMMTMLDPENAERYRRQQTIVERGFGLQMRELDRDFGEMSEDTCRTIINIMEMHHALQVSWGNLKEKQDLDERRISFLGFDAATESRYLSYVRFMVNTEGRYTHFDSGTHGFNSQTPMWDKYQRMLAIWQSCPRQYHLSAVEISQIINA
>NZ_CP009840.1|WP_002210296.1|672062_672917_-|MurR/RpiR-family-transcriptional-regulator
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAERADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMESEAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVVGLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSISFSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDAFRSQSATLCLVQSLVVALAYQQEAQAGAALAHRQ
>NZ_CP009840.1|WP_002210297.1|673222_674749_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
METVANFINGKCVFSCGNSVTSGSPRAQAIFNSATGEPIRQVMMSTAQETEQAITAAQQAFASWSRQAPLKRARVMFRFKSLLEQHLDALAQLISEEHGKVYSDAVGELTRGLEVVEFACGIPHLQKGEHSANVGTGVDNHSLMQPLGVCVGITPFNFPAMVPMWMFPIALATGNTFVLKPSEKDPSLAVRLAQLLTEAGLPDGVFNVVQGDKTAVDVLLTDPRVQAVSFVGSTPIAEYIYQTASAHGKRCQALGGAKNHCILMPDADMDMAASAIMGAAYGAAGERCMALSVVLAVGDETADNLCARLEQQISTLRVGPGLAQEPENDMGPLISAPHRAKVLGYIDSGVAQKATLRIDGRGLKVAGHEQGYFVGPTLFDHVTPAMTIYQEEIFGPVLSVVRIADYRSAVDLINRHEYGNGTAIFTRDGGTARRFCEEVQVGMVGVNVPIPVPVAFHSFGGWKRSIFGPLNVHGNDGVRFYTRMKTITARWPEAQHDQGAAFSMPTLG
>NZ_CP009840.1|WP_002359655.1|674783_676709_+|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MKTVRMTMAQALVRFLNQQYVAIDGQEVAFVHGVMTIFGHGNVLGIGQALEENPGHLQVHQGCNEQGMAHMAIGFAKQYRRQRIYAVSSSIGPGAANMVTAAATATANRIPLLLLPGDIYASRQPDPVLQQIEQYHDLSISTNDCFRPVSRYWDRINRPEQLMSAMLSAMRVLTDPADTGAVTLCLPQDVQGEAWDYPASFFERRVHRIERRPPDTRRLSDALSLIARKRRPLVVCGGGVRYSGAHEAFRAFVENAQLPFTETQAGKGALPSDHPLNLGGIGVTGGLAANRLAPQADLVIGIGTRLTDFTTGSKALFSHPEVAFLLLNVAEFDALKLDATALIADARVGLEALTEGLAGYRTAWQGDIIEAKAAWCDECQRLWSRTWRPDEVPEVAGHLDDSLQEYAEVLNTTLTQTRVLGLINQHIEDDAIVVGAAGSLPGDLQRLWQVKTADTYHLEYGYSCMGYEIAAAIGAKIAMPHQPVYAMVGDGSYMMLHSELHTAVQEGLKITVLLFDNAGFGCINNLQMGHGMGSFCTESRHRNHESGQLNGPLICVDFAQNAESYGCRAWRVHDEPSLLAALAASRDHPGPVLLDIKVLPKSMTHDYASWWRTGDAQIARSPAVQQAAERTQMKVKRARQY
>NZ_CP009840.1|WP_002210300.1|678113_679043_+|substrate-binding-domain-containing-protein
MKKLILAALIVFTSGVAFAENEQIVFSTPNLAMPFEVHMQRTAVKTAKALGVKLQVLDGQGSSPKQVADLENAITRGAQGFIVSPNDINAISSAVEEIQQAKLPVVTLDRSVESEKKVPHFGANNYKGGEAIANYVKSMFPNGAEIVLLTGQPGSSSNIERTKGIRDSLKTGGDKYRIVVDQTGNWMRSEGMRIIESVLPSLPKPPQVILSANDDMALGAIEALQSHGMKPGEIMVTGFDAVPEALARVREGWMAVTADQRPGYAVTTAMNQLVANIRDQKAITGADFLPTMITKENLDQAERVSEAGK
>NZ_CP009840.1|WP_002210301.1|679091_680639_+|sugar-ABC-transporter-ATP-binding-protein
MSQPLLKITDMAKSFSGVWALSNVQLTLEQGEIHALLGENGAGKSTLLKALSGAQPQTHGEIWFNGEMLALDDSPVERQNKGIITIYQEVNLLPNMTVAENMFLGREPRRRQVFVDEKAVNQEAQAILDYLQLNVSPTTAVARLSIAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVESLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRYTGSDEVAGTNVEKIIRLMVGRDVVFNRRPASETHHQDQPIRLSVQGLCREKPPLDPHGVALKDISFHVHAGEVLGIAGLVGAGRTEVARCLFGAGAFTSGNFEIDGVPYQPRDPMFALEQGIALVPEDRKKEGAVQGLSIRDNLTLSSLAGLLQWRFFVNTRKEDQLIETYRLALQIKMVNSEQAVRKLSGCNQQKVILARCMALNPRILIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVLAVSDRIITLSEGRVTGEIHGDDASEERLMTMMTINHNALNAA
>NZ_CP009840.1|WP_002210302.1|680650_681679_+|ABC-transporter-permease
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
>NZ_CP009840.1|WP_002210303.1|681702_682836_+|Gfo/Idh/MocA-family-oxidoreductase
MKEVRIGLIGTGYIGKAHAIAYAQAPTVFELRGKLVREMVAEVSPALAAQRAQAFGFNRFTCDWRELVADPAIDVVDICSPNYLHKEMALAAIHHGKHVYAEKPLALNARDASEMAAAATRAGVKTLVGFNYIKNPSAKLAKEIIERGEIGEVIHFYGTHNEDYMADPNTPIHWHCLHATAGLGALGDLAAHIVSMAQYLVGEITQVCGDLKTVVVTRPASVGSSARVAVENEDQAHAMVRFVNGAQGVIEASRVACGRKMGLSYMITGTQGAISFTQERMAELKLYLHNDPVNRQGFRTLLVGPAHPEYAAFCMAAGHGIGFNDQKTVEVRDLIDGIAMDTPLWPDFAEGWKVSRILDAIALSHQDSRWVNVTDIV
>NZ_CP009840.1|WP_002425473.1|682867_684838_+|5-dehydro-2-deoxygluconokinase
MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARSLAITGTHLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGSTNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRNQLEEMALQCGADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK
>NZ_CP009840.1|WP_002214721.1|684852_685911_+|myo-inosose-2-dehydratase
MTMVDQRTAVEPKTAVDQTTEVVRKAEVNQKIGIVRKIDIVRKTETVRKTEADRHTTAVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFAGFELGNKFSREAGVLGPILEHHQLKLVSGWYSGRLLERSVEEEIVAVRSHLALLRELGAKVMVFAEVSGCIHGEQQTPVHLRPRFPPARWAEYGAKLTAFARYTQALGVQIAYHHHMGTVIESAQDIDNLMIHTGEEVGLLLDTGHLTFAGADPLAVAQRWIARINHVHCKDVRTSVLADVKNRKTSFLDAVLSGVFTVPGDGGVDYPPIMALLKQHGYQGWLVVEAEQDPNVAHPMTYARMGYHNLSRLAHNAGLI
>NZ_CP009840.1|WP_002210306.1|685920_686736_+|5-deoxy-glucuronate-isomerase
MSRLLSRRQAPDERGLTQRITPAQAGWGYVGFEVYELNEGQPLTLTAVPDERCLVLIAGRASISTPSAQFPNIGDRMSPFERHKPWAVYVTPGEAVQVQAITPLELAVCSAPGKGTYPTRLISPEDIGAEARGKGHNQRYVHNILPEDHPADSLLVVEVYTNEGASSSYPSHKHDTDNPPHETYLEETYYHRLNPEQGFCMQRVYTDDRSLDECMAVYNREVVMVPRGYHPVATMAGYDSYYLNVMAGPVRKWIFSWENDHVWINHNYPIT

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Crispr_ID: NZ_CP009840_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009840_3

2198781-2198892

Orphan

Consensus_repeat	Method
AAAGCACATTTGAGCAGCGAGTGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009840_3

>merge|NZ_CP009840|3|2198781-2198892|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAGCCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCCAAAGCACATTTGAGCAGCCGAGTGAA

>NZ_CP009840|3|3|2198781-2198892|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAG	CCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCC
AAAGCACATTTGAGCAGCCGAGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009840.1\|WP_002209481.1\|2182274_2183078_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP009840.1\|WP_002209500.1\|2213878_2216062_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP009840.1\|WP_041176132.1\|2199374_2200154_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP009840.1\|WP_002209499.1\|2211888_2213877_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|235152
NZ_CP009840.1\|WP_002209495.1\|2203204_2203669_-\|DUF943-family-protein	unknown	unknown	gnl\|CDD\|368741
NZ_CP009840.1\|WP_002209485.1\|2187359_2189852_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP009840.1\|WP_002209498.1\|2208950_2210381_-\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NZ_CP009840.1\|WP_042669065.1\|2200153_2201176_-\|IS21-like-element-IS100-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP009840.1\|WP_002209496.1\|2204750_2206172_+\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NZ_CP009840.1\|WP_002209484.1\|2186520_2187138_-\|hemophore-HasA	unknown	unknown	gnl\|CDD\|368907
NZ_CP009840.1\|WP_002209494.1\|2202770_2203040_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009840.1\|WP_002223919.1\|2194187_2195351_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NZ_CP009840.1\|WP_002209487.1\|2190450_2191824_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NZ_CP009840.1\|WP_002209491.1\|2195724_2198361_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP009840.1\|WP_002209497.1\|2206334_2208782_-\|glycogen-phosphorylase	unknown	unknown	gnl\|CDD\|184948
NZ_CP009840.1\|WP_002215335.1\|2191990_2192767_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NZ_CP009840.1\|WP_002209482.1\|2183142_2184471_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP009840.1\|WP_079993164.1\|2203652_2203829_-\|DUF3289-family-protein	unknown	unknown	gnl\|CDD\|132079
NZ_CP009840.1\|WP_002209489.1\|2192932_2193937_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP009840.1\|WP_002209483.1\|2184546_2186355_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969

Protein	Function_ID	Function_description	E-value
NZ_CP009840.1\|WP_002209481.1\|2182274_2183078_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.51188e-39
NZ_CP009840.1\|WP_002209500.1\|2213878_2216062_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP009840.1\|WP_041176132.1\|2199374_2200154_-\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.33619e-177
NZ_CP009840.1\|WP_002209499.1\|2211888_2213877_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|235152	PRK03705, PRK03705, glycogen debranching protein GlgX.	0
NZ_CP009840.1\|WP_002209495.1\|2203204_2203669_-\|DUF943-family-protein	gnl\|CDD\|368741	pfam06092, DUF943, Enterobacterial putative membrane protein (DUF943). This family consists of several hypothetical putative membrane proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.	1.80736e-84
NZ_CP009840.1\|WP_002209485.1\|2187359_2189852_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	8.20794e-132
NZ_CP009840.1\|WP_002209498.1\|2208950_2210381_-\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NZ_CP009840.1\|WP_042669065.1\|2200153_2201176_-\|IS21-like-element-IS100-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.11672e-79
NZ_CP009840.1\|WP_002209496.1\|2204750_2206172_+\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP009840.1\|WP_002209484.1\|2186520_2187138_-\|hemophore-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	9.51098e-102
NZ_CP009840.1\|WP_079993164.1\|2203652_2203829_-\|DUF3289-family-protein	gnl\|CDD\|132079	TIGR03034, TIGR03034, conserved hypothetical protein. Members of this protein family have been found in several species of gammaproteobacteria, including Yersinia pestis and Y. pseudotuberculosis, Xylella fastidiosa, and Escherichia coli UTI89. As many as five members can be found in a single genome. The function is unknown. [Hypothetical proteins, Conserved].	5.70966e-16
NZ_CP009840.1\|WP_002223919.1\|2194187_2195351_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NZ_CP009840.1\|WP_002209487.1\|2190450_2191824_-\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NZ_CP009840.1\|WP_002209491.1\|2195724_2198361_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP009840.1\|WP_002209497.1\|2206334_2208782_-\|glycogen-phosphorylase	gnl\|CDD\|184948	PRK14986, PRK14986, glycogen phosphorylase; Provisional.	0
NZ_CP009840.1\|WP_002215335.1\|2191990_2192767_-\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.52737e-136
NZ_CP009840.1\|WP_002209482.1\|2183142_2184471_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.16318e-105
NZ_CP009840.1\|WP_002209489.1\|2192932_2193937_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP009840.1\|WP_002209483.1\|2184546_2186355_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0

>NZ_CP009840.1|WP_002209491.1|2195724_2198361_+|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NZ_CP009840.1|WP_002223919.1|2194187_2195351_+|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NZ_CP009840.1|WP_002209489.1|2192932_2193937_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSDLHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVTHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NZ_CP009840.1|WP_002215335.1|2191990_2192767_-|acetylglutamate-kinase
MMNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NZ_CP009840.1|WP_002209487.1|2190450_2191824_-|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NZ_CP009840.1|WP_002209485.1|2187359_2189852_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQGYSGQLAANTAETPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRCEQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NZ_CP009840.1|WP_002209484.1|2186520_2187138_-|hemophore-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVVDCHDMLLAA
>NZ_CP009840.1|WP_002209483.1|2184546_2186355_-|type-I-secretion-system-permease/ATPase
MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPTFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPEAKILNSRSGWSNGVSYGIGPARTTSSPKP
>NZ_CP009840.1|WP_002209482.1|2183142_2184471_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESVCYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGHIAKNKLLEMESQSTSLQARVEQSTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NZ_CP009840.1|WP_002209481.1|2182274_2183078_-|energy-transducer-TonB
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK
>NZ_CP009840.1|WP_041176132.1|2199374_2200154_-|AAA-family-ATPase
MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLAHHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
>NZ_CP009840.1|WP_042669065.1|2200153_2201176_-|IS21-like-element-IS100-family-transposase
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSLCRGVA
>NZ_CP009840.1|WP_002209494.1|2202770_2203040_-|hypothetical-protein
MLTDRDIEKTPKITRDYYFEYQPGDGYNPSSTIIFNHTLDASPLKNYLNSLGYERQSQILVIVKCGHYQAKRHNPLSISGWIRRTIKFG
>NZ_CP009840.1|WP_002209495.1|2203204_2203669_-|DUF943-family-protein
MKVKSKKNLWALLLTGSALLGYVFWLLLHPVEIVSVHQRNDYSDVLVRNFPLTDKSKINWWLENRDMLKDKYSIPKPASDGFYTVIFWDFGDGYKEEGKYDRRCFDDMKTSKNCIDKNKVFSVENDRDKDILFSVYDGMYRLEKNGKIVKMKRE
>NZ_CP009840.1|WP_079993164.1|2203652_2203829_-|DUF3289-family-protein
MKRSYLDNDNIKNSTFNGFNLFRIGFVLQRFNQFSFKPFMTNMEATVEIAGSRNESKK
>NZ_CP009840.1|WP_002209496.1|2204750_2206172_+|glycerol-3-phosphate-dehydrogenase
METKDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKLAPHIAFPMRFRLPHQPHLRPAWMIRTGLFLYDHLGKRTSLPASKGLRFGPESVLKPELVRGFEYSDCWVDDARLVVLNVQEVVKHGGEVRTRTKVTRTWREQGLWMVEALDVNTGKTFTWRAKGLVNATGPWVKQFFDDGLKLKSPYGIRLIKGSHIVVPRVHNQPQAYILQNEDHRIVFVIPWLDDYSIIGTTDVEYHGDPKEVKIDDQEMTYLLKVYNDHFKKQLGRDDIVWTYSGVRPLCDDESDSPQAVTRDYTLDVADEAGQAPLLSVFGGKLTTYRKLAEHALEKLSAYYPNVGPAWTKTGALPGGDIGGSRDSYTVQLRHRYNWLPEGLARRYTRTYGSHSELILANATRLESLGEHFGHGLYEAELRYLVENEWVVELDDAIWRRTKLGMALSDEEKQRVAQWLADAHTEKQQALPLVS
>NZ_CP009840.1|WP_002209497.1|2206334_2208782_-|glycogen-phosphorylase
MTSPFSYTSPVVSVDALKHSIAYKLMFIIGKDPTIATQHDWLNATLFAVRDRMVERWLRSNRAQLSQDVRQVYYLSMEFLLGRTLSNALLSMGIYDEIEQALDEMGLSLSELLKEENDPGLGNGGLGRLAACFLDSLATLALPGRGYGIRYEYGMFSQKIVNGQQMESPDNWLEYGNAWEFPRHNTRYKVRFGGRIQQEGSKIRWLETEEILACAYDQIIPGFDTDATNTLRLWSAQASNEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILNRHWAMHHTFNNLADKIAIHLNDTHPVLSIPEMMRLLIDEHKFTWMDAWDVVQQVFSYTNHTLMSEALETWPVDMIGKILPRHLQIIFDINDHFLKLVEEQYPDDKELLSRVSVIDENNGRRIRMAWLAVIASHKVNGVSALHSELMVQSLFADFARIFPNRFCNKTNGVTPRRWLGLANRPLAAVLDDSIGQTWRTDLSQLSELEKNLDYPSFLLALQKAKLENKKRLAVYIAEKLNIVVNPAALFDVQIKRIHEYKRQLLNVLHVITRYNRIIDAPDNNWVPRVVIFAGKAASAYYNAKQIIHLINDVAKVINNDPRINNLLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEIREHVGEENIFIFGNTTEQVEALRKSGYNPRKYYDEDPELHQVLTQIATGTFSPEEPHRYTNLFDSLVNLGDHYQLLADYRSYVDTQEQVDALYRNRDEWSRKTLLNIANMGYFSSDRTIKEYADEIWHIKPIRL
>NZ_CP009840.1|WP_002209498.1|2208950_2210381_-|glycogen-synthase-GlgA
MRVLHVCSELFPLLKTGGLADVIGALPAAQLAEGADVRIILPAFPDLRRGIPETVLVREIDTFAGRVALRYGHYRGIGIYLIDAPALYDRAGSPYHDASLYAYSDNYLRFALLGWMACELACGLDGYWRPEVVHAHDWHAGLTCAYLAARGRPARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYGLEFYGQISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAENLQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSGDATLQEAFLAAAAEHSGQVGVQIGYHEAFSHRIIAGSDVILVPSRFEPCGLTQLYGLKYGTLPLVRHTGGLADTVVDCALENLADGSASGFVFNECEAQALVKAIRRAFVLWSRPKHWRHVQRHAMRLDFGWQLAAVDYLSLYRRL
>NZ_CP009840.1|WP_002209499.1|2211888_2213877_-|glycogen-debranching-protein-GlgX
MAVLTHGSPTPSGAHFDGKGINFTLFSAHAEQVTLCLFDEQGQERQIAMPARTGDIWHGYLPGGKPGQRYGYRVSGPFEPSRGHRFNPHKLLIDPRTRALEGKVGDDPRFTGGVSQPDVRDSAAALPKCLVIHEEYDWQGDKPPAIPWGNTVIYEAHVRGLTQLHPDIPPELRGTYAALAHPALIEHLKTLGITTLELLPVQFHIDEPRLQKMGLSNYWGYNVLAPFAVDPDYASGREGISPLRELRDAVKALHNAGIEVILDVVFNHSAELDVFGPTLCQRGIDNASYYWLTPDGEYDNITGCGNALRLSHPYVTQWVIDCLNYWRDSCHVDGFRFDLGTVLGRTPAFDQHAPLFAALAADERLSACKLIAEPWDIGLGGYQLGNFPTGFSEWNDQYRDAMRGFWLRGEVPRGTFAQHFAASSRLFEQRGRLPSASINQITAHDGFTLLDLLCFNQKHNQMNGEENRDGSDNNHSNNFGCEGLVADAAIWQRRKACQRALLTTLLLSQGTPMLLAGDEQGHSQQGNNNAYCQNNILTWLDWGSADRALMTFTADLIRLRQQIPALTQDQWWQSGDSNVQWLDSQGQALSDAAWEQGCQQQLQILLSQRWLVLINATDHECEMHLPEGEWEGIPPFGVSDHAERLTTWRGSAHTICVLIKRD
>NZ_CP009840.1|WP_002209500.1|2213878_2216062_-|1,4-alpha-glucan-branching-protein-GlgB
MSVLPDRQVINQLISGHYGDPFSILGMHETSQGLQICALLPDAREVWLVETENGRRIAQLTLEDPRGFFIAQLTRRKKSFRYQFAVTWQENPQIIEDPYRFGPLLQDIDSWLLAEGTHLRPYERLGAHLMSLDGVSGVSFAVWAPNAQRVSVVGDFNFWDGRRHPMRLRRENGIWELFLPGIEAGQLYKFEIIDCHGQVRLKADPYAFEAQMRPETASLISPLPDVVKSSAARQKANDLCSPVSIYEVHLGSWRRHTDNNFWLSYRELADQLVEYVKYMGFTHVELLPINEHPFDGSWGYQPLGLYAPTRRYGTPEDFKAFVAKFHQAGINVILDWVPGHFPSDEHGLSTFDGTALYEYADPREGYHQDWNTLIYNYGRNEVRNYLAGNAFYWMERFGIDALRIDAVASMIYRDYSRAEGQWVPNYYGGRENLEAIAFLRYTNKTIGVERPGSVTMAEESTDFPGVTLPPDIGGLGFNYKWNMGWMHDTLNYMQCDPVHRKYHHNLMTFGMLYAYTENFILPLSHDEVVHGKRSILDRMPGDAWQKFANLRAYYAFMWAHPGKKLLFMGCEFAQGREWNFETSLDWHLLDDENGWHSGVQRLVRDLNHCYRQYAPLYEWDYQPAGFEWLVVDDHENSVFAFLRRDAEGHELIAISNFTPVPRYHYRVGIPQGGHYREVLNSDSAFYCGSNLGNQGGIDSHHVRSHNHEHSLLLTLPPLATIYLLREN

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Crispr_ID: NZ_CP009840_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009840_4

4084800-4084921

Orphan

Consensus_repeat	Method
CTTAATGCCAATATTAATCGACATAATCAATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009840_4

>merge|NZ_CP009840|4|4084800-4084921|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTGTAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCTCTTAATGCCAATATTAATCGATATAATCAATTG

>NZ_CP009840|4|4|4084800-4084921|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTG	TAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCT
CTTAATGCCAATATTAATCGATATAATCAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009840.1\|WP_002213046.1\|4077254_4077584_-\|sulfurtransferase-TusE	unknown	unknown	gnl\|CDD\|225472
NZ_CP009840.1\|WP_002213058.1\|4073741_4074422_-\|DUF2057-family-protein	unknown	unknown	gnl\|CDD\|179619
NZ_CP009840.1\|WP_002213049.1\|4076924_4077203_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|184675
NZ_CP009840.1\|WP_002213052.1\|4075640_4076831_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|185082
NZ_CP009840.1\|WP_002213028.1\|4088311_4089550_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NZ_CP009840.1\|WP_002213056.1\|4074737_4075154_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP009840.1\|WP_002213032.1\|4086273_4087557_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NZ_CP009840.1\|WP_002213060.1\|4073098_4073563_-\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_CP009840.1\|WP_002213034.1\|4085759_4086284_+\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP009840.1\|WP_002213030.1\|4087558_4088296_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NZ_CP009840.1\|WP_002228570.1\|4091893_4092334_+\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NZ_CP009840.1\|WP_002213024.1\|4091018_4091807_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP009840.1\|WP_002213039.1\|4081229_4083647_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366708
NZ_CP009840.1\|WP_002213017.1\|4092371_4092620_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851
NZ_CP009840.1\|WP_002213026.1\|4089542_4090262_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP009840.1\|WP_002213054.1\|4075262_4075580_-\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|184526
NZ_CP009840.1\|WP_002213025.1\|4090263_4091016_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235936
NZ_CP009840.1\|WP_002213061.1\|4071052_4073038_+\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|182930
NZ_CP009840.1\|WP_002213038.1\|4083800_4084547_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP009840.1\|WP_002213036.1\|4085277_4085496_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009840.1\|WP_002213046.1\|4077254_4077584_-\|sulfurtransferase-TusE	gnl\|CDD\|225472	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism].	2.4785e-71
NZ_CP009840.1\|WP_002213058.1\|4073741_4074422_-\|DUF2057-family-protein	gnl\|CDD\|179619	PRK03641, PRK03641, DUF2057 family protein.	4.09411e-122
NZ_CP009840.1\|WP_002213049.1\|4076924_4077203_+\|acylphosphatase	gnl\|CDD\|184675	PRK14426, PRK14426, acylphosphatase; Provisional.	1.02172e-54
NZ_CP009840.1\|WP_002213052.1\|4075640_4076831_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	gnl\|CDD\|185082	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI.	0
NZ_CP009840.1\|WP_002213028.1\|4088311_4089550_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	1.57028e-141
NZ_CP009840.1\|WP_002213056.1\|4074737_4075154_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.53332e-71
NZ_CP009840.1\|WP_002213032.1\|4086273_4087557_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.93328e-136
NZ_CP009840.1\|WP_002213060.1\|4073098_4073563_-\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.55286e-93
NZ_CP009840.1\|WP_002213034.1\|4085759_4086284_+\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	1.09929e-42
NZ_CP009840.1\|WP_002213030.1\|4087558_4088296_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.26541e-68
NZ_CP009840.1\|WP_002228570.1\|4091893_4092334_+\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NZ_CP009840.1\|WP_002213024.1\|4091018_4091807_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.49415e-40
NZ_CP009840.1\|WP_002213039.1\|4081229_4083647_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	1.41205e-31
NZ_CP009840.1\|WP_002213017.1\|4092371_4092620_+\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09
NZ_CP009840.1\|WP_002213026.1\|4089542_4090262_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35
NZ_CP009840.1\|WP_002213054.1\|4075262_4075580_-\|heat-shock-protein-HspQ	gnl\|CDD\|184526	PRK14129, PRK14129, heat shock protein HspQ; Provisional.	3.64231e-72
NZ_CP009840.1\|WP_002213061.1\|4071052_4073038_+\|DNA-helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	0
NZ_CP009840.1\|WP_002213038.1\|4083800_4084547_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NZ_CP009840.1\|WP_002213025.1\|4090263_4091016_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	2.57932e-133

>NZ_CP009840.1|WP_002213038.1|4083800_4084547_-|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NZ_CP009840.1|WP_002213039.1|4081229_4083647_-|GNAT-family-N-acetyltransferase
MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGLLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQLAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVKEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQPGANN
>NZ_CP009840.1|WP_002213046.1|4077254_4077584_-|sulfurtransferase-TusE
MLEFEGRIIDTDAQGYLKNSTDWSEALAPVLAEQEGITLTEPHWEVVRFVRAFYQEFNTSPAIRMLVKAMAQKYGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
>NZ_CP009840.1|WP_002213049.1|4076924_4077203_+|acylphosphatase
MSKIYIVAYVYGVVQGVGFRYSTQRQAQQLGVTGYAKNCDDGSVEVVASGNPQAVERLMEWIRQGGPRGARVDRLLTEPYPPTPFETFSIRY
>NZ_CP009840.1|WP_002213052.1|4075640_4076831_-|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI
MTVRLILAKGREKSLLRRHPWIFSGAVQRLEGDALSGETIDILDSQGKWLARAAYSPESQILARVWTFQQDEVIDCAFFIRRLQQAQNWRDWLAQRDGLNGYRLIAGESDGLPGITIDRFQNFLVLQLLSAGAEYQRETLVSALQHCYPECSIYDRSDVSVRKKEGLPLTQGLICGEMPPALLPISENGMQLFVDIQQGHKTGFYLDQRDSRLAARNYANGRRVLNCFSYTGAFAVAALMGNCQQVISVDTSQSVLDIAKQNIELNQLDLSKTEFVRDDVFQLLRSYRAQGEKFDLIIMDPPKFVENKSQLASACRGYKDINMLAIQLLRPGGILLSFSCSGLMPVDLFQKILADAALDAGHDIQFIEQFRQAADHPVIAAYPEGLYLKGFACRVM
>NZ_CP009840.1|WP_002213054.1|4075262_4075580_-|heat-shock-protein-HspQ
MIASKFGIGQQVRHSLHGYLGVVIDIDPEYSLAPPEPDEVANNKTLRSSPWYHVVIEDDDGQPVHTYLAEAQLTYEDVDAHPEQPSLDELAASIRHQLQAPHLRN
>NZ_CP009840.1|WP_002213056.1|4074737_4075154_+|CoA-binding-protein
MHDKDIADILKKVKTIALVGASDIPSRPSYRVMAYLLQQGYQVTPVNPKLAGELLLGQLVYAELADIPHAIDMVDVFRNSDAAYCIAQDAIAIGAKVLWLQIGVINEQAAILATDAGLQVVMDRCPKIELPRLGLEKG
>NZ_CP009840.1|WP_002213058.1|4073741_4074422_-|DUF2057-family-protein
MKLGLVAGMLAVCFSFSSVAMTLKLTPEIDLLVVDGKNMSGSLLKGADSLELNSGMHQILFKVIKPLPTDPLVLYSSPPLIVVFNAHNTRSVAIKLPVINTLRDGHQFSKNPLYQLIGDNGHPLSVRHDVLRQDHLNNSTTLETVMAAYNVGKYNASVPAFAAIPPSPVSAVPGTTIPVAGVNTPHKTASLQGENVTEQMLQYWFLQANPETQKRFLIWAKKQPIH
>NZ_CP009840.1|WP_002213060.1|4073098_4073563_-|methylglyoxal-synthase
MELTTRTIAARKHIALVSHDHCKKSLLAWVMENRDLLAQHELYATGTTGNLVQKATGIDVHCLLSGPMGGDQEVGALISEKKIDILIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNRSTADFLIGSTLFSSEVTIAIPDYDRYMQQRLDLK
>NZ_CP009840.1|WP_002213061.1|4071052_4073038_+|DNA-helicase-IV
MELKATSFGKHLSQHPYNRVRLLNAGIEVCGDKHQYLIPFNQLVSIQCKRGIVWGELEFELPQQKVVRLHGTEWQETQHFYHYLLGVWQQWSEEMSQVCAEVLHKQVESIKRIEQQDKWFKRSELGQIQVMIREAFSALPMPVERLAAFESCRADYECCLRWLQQGRHSVERCNQQWTARMLEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKKAQDKRLAARLASRLERWVGLMRMYGGSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQLEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPDAEERRLLYVAITRAKHQVWLLQDTARPSIFVSQLSELGALVQRKP
>NZ_CP009840.1|WP_002213036.1|4085277_4085496_+|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NZ_CP009840.1|WP_002213034.1|4085759_4086284_+|beta-hydroxyacyl-ACP-dehydratase
MKNTELNFLKTNFLFNQDITNELNTSFGQDIIKKMIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NZ_CP009840.1|WP_002213032.1|4086273_4087557_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPEYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLIFEQAEHAKNRGAKIYAELLGASVNSDANHLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNVKKEVNIFLNNSFGMGGINSASLFSRYHG
>NZ_CP009840.1|WP_002213030.1|4087558_4088296_+|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEAILFLVAKESSYVNGAVFNVTGGIDWVY
>NZ_CP009840.1|WP_002213028.1|4088311_4089550_+|hydroxymethylglutaryl-CoA-synthase-family-protein
MNSIGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLPWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NZ_CP009840.1|WP_002213026.1|4089542_4090262_+|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NZ_CP009840.1|WP_002213025.1|4090263_4091016_+|enoyl-CoA-hydratase/isomerase-family-protein
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLELLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NZ_CP009840.1|WP_002213024.1|4091018_4091807_+|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQAFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NZ_CP009840.1|WP_002228570.1|4091893_4092334_+|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NZ_CP009840.1|WP_002213017.1|4092371_4092620_+|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES

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Crispr_ID: NZ_CP009840_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009840_5

4211830-4212037

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

3 spacers

DEDDh

The CRISPR arrays of NZ_CP009840_5

>merge|NZ_CP009840|5|4211830-4212037|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAAATGTTCGACGATTTATTTTATTTGTATTTCAGGTTCACTGCCGCACAGGCAGCTTAGAAAATTTATTAAAGATGCTGACAAAAAGAACTTAAGTTCACTGCCGCACAGGCAGCTTAGAAAGTCAACGCTTCACTCCCTGCGCGGGGTATAACGTTCACTGCCGCACAGGCAGCCCAATAA

>NZ_CP009840|5|3|4211830-4211977|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP009840|5|5|4211830-4212037|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCAACGCTTCACTCCCTGCGCGGGGTATAAC
GTTCACTGCCGCACAGGCAGCCCAATAA

>NZ_CP009840|5|3|4211830-4212037|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCAACGCTTCACTCCCTGCGCGGGGTATAAC
GTTCACTGCCGCACAGGCAGCCCAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009840.1\|WP_002211916.1\|4224325_4225168_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP009840.1\|WP_002231208.1\|4203490_4203538_-\|his-operon-leader-peptide	unknown	unknown	unknown
NZ_CP009840.1\|WP_002216311.1\|4207213_4208107_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009840.1\|WP_002211895.1\|4200973_4202305_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NZ_CP009840.1\|WP_002211902.1\|4209943_4211335_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP009840.1\|WP_002216388.1\|4217197_4220350_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP009840.1\|WP_002216312.1\|4208392_4209484_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP009840.1\|WP_002211900.1\|4205574_4206570_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009840.1\|WP_002211905.1\|4213794_4214904_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187547
NZ_CP009840.1\|WP_157131899.1\|4204895_4205186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374732
NZ_CP009840.1\|WP_002211911.1\|4221374_4222679_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP009840.1\|WP_002211896.1\|4202308_4203208_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NZ_CP009840.1\|WP_002224721.1\|4221018_4221192_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009840.1\|WP_002211917.1\|4225199_4226477_+\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NZ_CP009840.1\|WP_002211904.1\|4212071_4213502_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP009840.1\|WP_002216310.1\|4206566_4207256_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009840.1\|WP_002211912.1\|4222687_4223110_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP009840.1\|WP_002216393.1\|4223537_4224278_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
NZ_CP009840.1\|WP_002217522.1\|4215337_4215655_+\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NZ_CP009840.1\|WP_002211898.1\|4203913_4204741_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576

Protein	Function_ID	Function_description	E-value
NZ_CP009840.1\|WP_002211916.1\|4224325_4225168_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	8.96038e-107
NZ_CP009840.1\|WP_002216311.1\|4207213_4208107_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	3.90601e-98
NZ_CP009840.1\|WP_002211895.1\|4200973_4202305_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NZ_CP009840.1\|WP_002211902.1\|4209943_4211335_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.72025e-45
NZ_CP009840.1\|WP_002216388.1\|4217197_4220350_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	1.47456e-126
NZ_CP009840.1\|WP_002216312.1\|4208392_4209484_+\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP009840.1\|WP_002211900.1\|4205574_4206570_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.22935e-72
NZ_CP009840.1\|WP_002211905.1\|4213794_4214904_+\|SDR-family-oxidoreductase	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89947e-61
NZ_CP009840.1\|WP_157131899.1\|4204895_4205186_-\|hypothetical-protein	gnl\|CDD\|374732	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein. Tai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein. The effector is Tae4, pfam14113.	4.0065e-14
NZ_CP009840.1\|WP_002211912.1\|4222687_4223110_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	5.0494e-57
NZ_CP009840.1\|WP_002211896.1\|4202308_4203208_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.63843e-161
NZ_CP009840.1\|WP_002211911.1\|4221374_4222679_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17308e-74
NZ_CP009840.1\|WP_002211917.1\|4225199_4226477_+\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NZ_CP009840.1\|WP_002211904.1\|4212071_4213502_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP009840.1\|WP_002216310.1\|4206566_4207256_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.76633e-90
NZ_CP009840.1\|WP_002216393.1\|4223537_4224278_+\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.05065e-117
NZ_CP009840.1\|WP_002217522.1\|4215337_4215655_+\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	5.26004e-59
NZ_CP009840.1\|WP_002211898.1\|4203913_4204741_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.54107e-68

>NZ_CP009840.1|WP_002211902.1|4209943_4211335_+|APC-family-permease
MAHDATVAVGTNQTGTNNRVQLRKTLTLVQVVMMGLAYLQPMTIFDTFGIVSGLTDGHVATSYAIALIAVLFTAVSYGKLVKRFPSAGSAYTYAQKSISPNVGFMVGWSSLLDYLFMPMINILLAKIYLEAIFPGVPSWIFVGALVSLMTLFNLRGINIVANLNSVIVVVQVAIMVVFMGLLIHGVYQGEGAGTLVSARPFYSENAHLVPMITGATILCFSFLGFDGISSLSEETPNAGKVIPKAIFLTALIGGIIFIAVSYCLQLYFPDISRFTDPEASQPEIMLFVAGKFFQSVILCFSCVTVLASGMAAHAGVSRLLYVMGRDGVFPEKVFGYVHPKWRTPAINVLLVGGVALSAISFDLVTATALINFGALVAFTFVNLSVIAQFYVRERRNSTFKDHFNYLILPMIGAGTVGVLWVNLESSSMTLGLVWGAIGLSYMVWKTRAFRRALPQFTEEPAQL
>NZ_CP009840.1|WP_002216312.1|4208392_4209484_+|oxidoreductase
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>NZ_CP009840.1|WP_002216311.1|4207213_4208107_-|sugar-ABC-transporter-ATP-binding-protein
MSSIPPSRLEMRNISISFSGFHALQEVDFTLEGGSTHALIGANGAGKSTLMAILSGAHNHYRGEIFIDGQPIDIHSPRQARQHGIHVVQQEVDVALIPTLSVAENIMLDELADRGHLFNWPQLYRQAEALLEQLELKLNVRQRLESCTLAEKQQVLLARALSHQCRFLILDEPTAPLDQEESARLFRVVRRLQSEGIGIVFISHRIHELREVCDQLTVLRDGRRVSHDTMEGMSGEQIVEKMLGHTLEDISPLGERQSAAKHGCRKHYCRKHCYRSAAYMISISCAISPSHYIRAKF
>NZ_CP009840.1|WP_002216310.1|4206566_4207256_-|sugar-ABC-transporter-ATP-binding-protein
MRDISLTLHQGEILGIAGLAGAGKTELCKALFGDTPSTLERGELSGKAWRPRSPDRSVAQGLALVPEERRKEGIFIDEGIPMNLSVAADDSFSRWSLFSRRQELSWAKELIERLGIRTSSPQQKLAHLSGGNQQKVAIGKWLRGDAQVLIFDEPTKGVDIKAKQDLFSLIDQLAQQGKGIIYASGEFSELVGLCDRICVLWDGRIVAELNAAEVDEETLLLFSTGGTPQ
>NZ_CP009840.1|WP_002211900.1|4205574_4206570_-|ABC-transporter-permease
MSKELPLPDVQPWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAMALALTYIQKR
>NZ_CP009840.1|WP_157131899.1|4204895_4205186_-|hypothetical-protein
MQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSAIKDKYTRHI
>NZ_CP009840.1|WP_002211898.1|4203913_4204741_+|SDR-family-oxidoreductase
MKKVAIIGLGWLGMPLAQSLSRRGIDVVGSKTTPDGVDAARMSGINCYPLVLTPELICEPDDLAQLMAVDALVITLPASRTTAGGDHYFQAVQQVVDSALAFGVPRIIFTSSTSVYGETRGRIKESSPLQPVTVAGKTLMALEQWLHQLPHTSVDILRLAGLVGTDRHPGRFLAGKTGVKGGSQGVNLVHQEDVIAAIELLLNRPKGGHLYNLCAPIHPRKRDFYPACARALQLTPPEFAVEEQEGANREIDGSKICSELGFEYLYPDPSRMPLN
>NZ_CP009840.1|WP_002231208.1|4203490_4203538_-|his-operon-leader-peptide
MNRVQFNHHHHHHPD
>NZ_CP009840.1|WP_002211896.1|4202308_4203208_-|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESQELLSRCGIKINLQQQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGDDPRYFTLRRLDFGGCRLSLAAPLDAEYTGPQCLQDTRIATSYPHILKQYLDKQGVRFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMSVDKQQLIDRLMTRIQGVIQARESKYIMMHAPSERLDEIITLLPGAERPTILPLAGDKSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NZ_CP009840.1|WP_002211895.1|4200973_4202305_-|histidinol-dehydrogenase
MQPTNFNTLINWQQCSEEQQKALLSRPAINASERITAAVSDILDRVKAEGDSALRDFSQRFDHVQVADIRITASEIAAASARLSDDVKHAMAQAVRNIEIFHNAQKMPVVDVETQPGVRCQQITRPIASVGLYIPGGSAPLPSTVLMLGTPARIAGCQRVVLCSPPPIADEILYAAQLCGIQEVFQIGGAQAIAAMAFGSESVPKVHKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPAFIAADLLSQAEHGPDSQVILLTPDAAIAQAVAVEVEQQLALLSRADIARQALESSRLIVTNDLQQCIDISNAYGPEHLILQIRQPEEIIDQIDNAGSVFMGDWSPESAGDYASGTNHVLPTYGYTSTYSSLGLADFVKRMTVQQLTPQGLLGLASTIETLAQAEQLTAHKNAVTLRVTALNNALTAVNKE
>NZ_CP009840.1|WP_002211904.1|4212071_4213502_-|exodeoxyribonuclease-I
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
>NZ_CP009840.1|WP_002211905.1|4213794_4214904_+|SDR-family-oxidoreductase
MKKLLLTGATGFLGGAVLEKLLLASSDFNYLLLVRANTPEQGLMRIRENLEKFYLPNELINKININHVLLGDLAEPDSFINDVRIDDVTHVINCAAIASFGNNPLIWKVNVEGTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLLAEHCPTLPLVFARPSIVVGHTRLGCQPSSSIFWVFRMALMLRKFMCSLDDHIDVIPVDYCADALLYILEYPNLPDDIYHISAGEKGSVSFSEIDQAMSVAAKQKPVGVNYSQVEYTALVQMRNQLKGIFGPCNERLMLKAMRLYGSFAMLNVRFSNERLLSLGMPRTPRFTDYIARCVESSHGMTIQQQMAVDFK
>NZ_CP009840.1|WP_002217522.1|4215337_4215655_+|DUF496-family-protein
MDNASKPTFQDVLEFVRMFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEEVQAIIANMRGDYEDRVDDYIIKNADLSKERRELSKKLKAMGEVK
>NZ_CP009840.1|WP_002216388.1|4217197_4220350_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MSLYRISSLHQAKQLNKNKQLNKTRISKSVVWANIVIQAIFPLSIAFTPAVMAAETVGASDEKPRSASQAEQSTANAATRLASILTNDDSAKQASSIARGTAANAGNEALQKWFNQFGSAKVQLNLDEKLSLKGSQLDVLLPLTDSPDLLTFTQLGGRYIDDRVTLNVGLGQRHFFAQQMLGYNLFIDHDASYSHTRIGVGAEYGRDFINLAANGYFGVSGWKNSPDLDKYDEKVANGFDLRSEAYLPTLPQLGGKLIYEQYFGDEVGLFGVDNRQKNPLAVTLGVNYTPIPLFTVGVDHKMGRAGMNDTRFNLGFNYAFGTPLTHQLDSDAVAIKRSLMGSRYNLVDRNNQIVMKYRKQNRVTLELPARVSGAARQTMPLVANATAQQGIDRLEWEASALTLAGGKITGSGNNWQITLPSYLSGGEGNNTYRISAIAYDTLGNASPVAYSDLVVDSHGVNTNASGLTAAPEILPANASASSVIEFNIKDNANQPITGIADELAFSLELVELPEELAKAKARSVPLKTVSHTLTKITESAPGIYQATLTSGSKPQLINITAQINGVPLADVQTKVTLIADESTATLQTSSLQIITNGSLADDTDANQIRAVVVDAYGNKLSGVQVNFTVGNNAKITETTLSDKQGGVTAAITSTKAGTYTVTAELNGVTQQIDVNFIPDAGTATLDDSDEYKLQWVTNGQVADGESTNSVQLTVVDKFGNTVPGVDVAFTTDIGAIISEVTPTDANGVATAKIISSQAKSHTVKATLNRKEQTVEVNFIADTATAEITANNFTVEVDGQVAGSGTNQVQALVVDKKGNPVANMTVNFTATNGVVVETTSAKTDENGKVTTNLSMTNVGGTISTVTATMINSANVTSTQDKPVIFYPDFTKATLNTPANTYSGFNINSGFPTTGFKNTHFQLSPHGITGANSDYDWVSSHPNVSVSNTGAITLQDNPGGKVTITATWKHDSSKVFTYDFTLNYWVGLYSSTNLSWAQANASCINAGMRLPTNREVSAGQDVRGVGSLLSLSIILCNCHRIKGDRSGGHRTR
>NZ_CP009840.1|WP_002224721.1|4221018_4221192_-|hypothetical-protein
MCRKSLNQPFYDGHMNDNHMNDNHGVDTGSALSTALASFPLSRLYPSYFTLPVRWLR
>NZ_CP009840.1|WP_002211911.1|4221374_4222679_+|MFS-transporter
MSNFNHYPDPTLNSAIKKAWYRLMPLMFIMYFVAFIDRINVGFAKDAMSADIGLSQSAFALGAGIFFAAYALFGIPANLMMNKLGAKVWLSSTTVVWGLLSAGTGLVSNEYQFVILRFLLGVAEAGFYPGILLLASIYFPNKIRASVIGIFVLGVPAALTLGSPISGALLDMQGFLGQPGWFWMFLLEGLPAVGLGIFAFFYLDDSPATARYLNPEEKQALLTQLSIEQSDTESSSVKAVLLSPKVWHLALIYGTIQVGVYGLIFFLPSQVATLLGSTLGFKESLVAAIPWAFSALGVYYIPRYADRKTHRRNPIATLNLVVAAIGLIISAYASPVLAIAALCLCAIGFLAVQPIFWTFPAQILSGKALAAGIGFCTTMGAFFSFLAPIIRVEAESQFNSPPAGLITLALFSLLSATLIFSLKFWPAKATAEVI
>NZ_CP009840.1|WP_002211912.1|4222687_4223110_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MSAPLPYIKPGERVIIYDGVCALCTGWVNFLIRHDRRHTVRLSAVQSKKGHALLEWAGLPTDKINTLVLIENQQVYLRSEAIFRVIANLPWPWRILGVLRIFPRPLRDRCYDGIALNRYRLFGRYDAVRKLKADHERRFL
>NZ_CP009840.1|WP_002216393.1|4223537_4224278_+|SDR-family-oxidoreductase
MNLKGKKALVTAAGQGIGFNTATLFARKGAEVIASDINIAALSNIPGITAVSLDVTDTLAINDVAQAIGPIDVLFNCAGVVHSGDILTCSEQEWQFALDLNVTAMFHMIRAFLPGMIACQQGSIINMSSVASSIKGVPNRFAYSTSKAAVIGLTRSVAADYVTQGIRCNAICPGTVESPSLRQRIAVQAHAEGRSEADVFQAFAARQPIGRIGKAEEIAQLALYLASDASAYTTGTIHIIDGGWSN
>NZ_CP009840.1|WP_002211916.1|4224325_4225168_+|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGEERPALLDELGEIRDLSAHIEDISGKFLLPATLYKLRQLDSASLPLVRGEQRLGACVGHVGKFICVGLNYADHAAETGAEIPQEPVIFNKWTSAIIGPNDDIEIPRNSVKTDWEVELGVVIGTGGRYIGEANAMSYVAGYCVVNDISEREFQLEHGGTWDKGKGCDTFGPIGPWLVTRDEIPDPHQLGLWLDVDGRRYQNGSTRTMIFKIPQIISYLSRFMSLQSGDVISTGTPPGVGLGQKPPVYLHAGQIMRLGIEGLGEQCQKTIQA
>NZ_CP009840.1|WP_002211917.1|4225199_4226477_+|L-fuconate-dehydratase
MTIITALRTEDVRFPTSLELDGSDAMNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANMGKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELVRCIDFRYITDCITPEEALTLLQQRAHNKALRLEKLQDEGYPCYTTSAGWLGYPDDKLRRLCQDAVDAGFDYLKLKVGRDLEDDIRRVRITREVLGPDRKLMIDANQIWETNEAIPWVNQLAFANPWFIEEPTNPDDIEGHRRIRQGVAPVKVATGEMCQNRIMFKQFIMREAIDVVQIDACRLGGVNEVLAVMLMAAKYDLPVCPHAGGVGLCEYVQHLAMIDYLCIAGTDKGRVIEYVDHLHEHFVHPCVIKNAAYMPPEQPGFSIEMHQSSIEKYRFRV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP009840_1	1.7\|546132\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546132-546163	32	NZ_CP009840.1	140511-140542	1.0
NZ_CP009840_1	1.8\|546192\|33\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546192-546224	33	NZ_CP009840.1	146391-146423	1.0
NZ_CP009840_2	2.1\|671757\|33\|NZ_CP009840\|PILER-CR,CRISPRCasFinder,CRT	671757-671789	33	NZ_CP009840.1	148763-148795	1.0
NZ_CP009840_2	2.5\|672000\|32\|NZ_CP009840\|CRISPRCasFinder,CRT	672000-672031	32	NZ_CP009840.1	146077-146108	1.0

1. spacer 1.7|546132|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to position: 140511-140542, mismatch: 0, identity: 1.0

aaaaagaatttgggattaaagttacccatcag	CRISPR spacer
aaaaagaatttgggattaaagttacccatcag	Protospacer
********************************

2. spacer 1.8|546192|33|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to position: 146391-146423, mismatch: 0, identity: 1.0

tcaatgcctgaatctctggcgtgatagctgcgg	CRISPR spacer
tcaatgcctgaatctctggcgtgatagctgcgg	Protospacer
*********************************

3. spacer 2.1|671757|33|NZ_CP009840|PILER-CR,CRISPRCasFinder,CRT matches to position: 148763-148795, mismatch: 0, identity: 1.0

ccggcggtgatggcaattctacgtgggttcgtt	CRISPR spacer
ccggcggtgatggcaattctacgtgggttcgtt	Protospacer
*********************************

4. spacer 2.5|672000|32|NZ_CP009840|CRISPRCasFinder,CRT matches to position: 146077-146108, mismatch: 0, identity: 1.0

agactgatgcaagatggcggtatgcgtacaga	CRISPR spacer
agactgatgcaagatggcggtatgcgtacaga	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009840_2	2.5\|672000\|32\|NZ_CP009840\|CRISPRCasFinder,CRT	672000-672031	32	MT374852	Yersinia phage vB_YpM_3, complete genome	12-43	0	1.0
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK820641	Gordonia phage EnalisNailo, complete genome	34088-34119	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK878898	Gordonia phage Zameen, complete genome	34513-34544	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK919483	Gordonia phage Suscepit, complete genome	34514-34545	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK284520	Gordonia phage Lilas, complete genome	35799-35830	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK016492	Gordonia phage Bialota, complete genome	35265-35296	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK820642	Gordonia phage Polly, complete genome	33956-33987	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	NC_041883	Gordonia phage Attis, complete genome	31646-31677	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK814755	Gordonia phage Antonio, complete genome	34513-34544	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK875796	Gordonia phage Tayonia, complete genome	34513-34544	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK801734	Gordonia phage LordFarquaad, complete genome	31627-31658	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	MK433274	Gordonia phage Bradissa, complete genome	34554-34585	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	KU963257	Gordonia phage Kita, complete genome	34522-34553	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	NC_031251	Gordonia phage SoilAssassin, complete genome	31645-31676	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	NC_031097	Gordonia phage Zirinka, complete genome	35253-35284	6	0.812
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	138555-138586	6	0.812
NZ_CP009840_1	1.1\|545772\|32\|NZ_CP009840\|CRISPRCasFinder,CRT	545772-545803	32	CP049262	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence	69636-69667	7	0.781
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	JF974294	Aeromonas phage pIS4-A genomic sequence	21965-21996	7	0.781
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NC_021534	Vibrio phage pYD38-A genomic sequence	3299-3330	7	0.781
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	440819-440850	7	0.781
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	282870-282901	7	0.781
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	KJ433975	Mycobacterium phage 40BC, complete genome	23231-23262	7	0.781
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	KJ433973	Mycobacterium phage 39HC, complete genome	23231-23262	7	0.781
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	NC_024145	Mycobacterium phage Hosp, complete genome	21427-21458	7	0.781
NZ_CP009840_5	5.2\|4211918\|32\|NZ_CP009840\|PILER-CR,CRISPRCasFinder,CRT	4211918-4211949	32	MH616963	CrAssphage sp. isolate ctbg_1, complete genome	86942-86973	7	0.781
NZ_CP009840_1	1.6\|546072\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546072-546103	32	NZ_CP024873	Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence	14979-15010	8	0.75
NZ_CP009840_1	1.7\|546132\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546132-546163	32	NZ_CP047125	Lactobacillus hilgardii strain FLUB plasmid unnamed4	1912-1943	8	0.75
NZ_CP009840_5	5.2\|4211918\|32\|NZ_CP009840\|PILER-CR,CRISPRCasFinder,CRT	4211918-4211949	32	NZ_CP010358	Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence	46720-46751	8	0.75
NZ_CP009840_5	5.2\|4211918\|32\|NZ_CP009840\|PILER-CR,CRISPRCasFinder,CRT	4211918-4211949	32	NC_019694	Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence	20911-20942	8	0.75
NZ_CP009840_1	1.2\|545832\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545832-545863	32	NZ_CP031943	Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence	4006-4037	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	MF679145	Escherichia coli plasmid pBJ114-96, complete sequence	37586-37617	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	60831-60862	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP021340	Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence	67671-67702	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP021336	Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence	67672-67703	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP040920	Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence	33435-33466	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP024832	Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence	33830-33861	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP024817	Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence	62769-62800	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	15616-15647	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	112580-112611	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP023961	Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence	16858-16889	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	AP023222	Escherichia coli M505 plasmid pM505-b DNA, complete genome	93734-93765	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	AP023233	Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome	47570-47601	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP019075	Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence	16520-16551	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	3287-3318	9	0.719
NZ_CP009840_1	1.3\|545892\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545892-545923	32	NZ_CP011063	Escherichia coli str. Sanji plasmid pSJ_98, complete sequence	37637-37668	9	0.719
NZ_CP009840_2	2.4\|671939\|33\|NZ_CP009840\|PILER-CR,CRISPRCasFinder,CRT	671939-671971	33	NZ_CP040366	Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence	923-955	9	0.727
NZ_CP009840_5	5.2\|4211918\|32\|NZ_CP009840\|PILER-CR,CRISPRCasFinder,CRT	4211918-4211949	32	MT774386	CrAssphage cr110_1, complete genome	42858-42889	9	0.719
NZ_CP009840_5	5.2\|4211918\|32\|NZ_CP009840\|PILER-CR,CRISPRCasFinder,CRT	4211918-4211949	32	NZ_CP028934	Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence	25849-25880	9	0.719
NZ_CP009840_1	1.4\|545952\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	545952-545983	32	NZ_JX627581	Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence	30496-30527	10	0.688
NZ_CP009840_1	1.6\|546072\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546072-546103	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	815356-815387	11	0.656
NZ_CP009840_1	1.6\|546072\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546072-546103	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	820287-820318	11	0.656
NZ_CP009840_1	1.6\|546072\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546072-546103	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	2180994-2181025	11	0.656
NZ_CP009840_1	1.6\|546072\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546072-546103	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	2185925-2185956	11	0.656

1. spacer 2.5|672000|32|NZ_CP009840|CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

agactgatgcaagatggcggtatgcgtacaga	CRISPR spacer
agactgatgcaagatggcggtatgcgtacaga	Protospacer
********************************

2. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

3. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

4. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

5. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

6. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

7. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

8. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

9. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

10. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

11. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

12. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

13. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

14. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

15. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

16. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

tcgccattccgtgaacctgagcgcgttcgcga--	CRISPR spacer
tcgcctttccctgaacctga--gcgatcgtgacc	Protospacer
***** **** *********  *** ***.**

17. spacer 1.1|545772|32|NZ_CP009840|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

tcaggggactggcgaacaatgtctttcatgat	CRISPR spacer
acgtcgcgctggcgaacaatctctttcatgat	Protospacer
 *.  * .************ ***********

18. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

19. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

20. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

21. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

22. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

23. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

24. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

25. spacer 5.2|4211918|32|NZ_CP009840|PILER-CR,CRISPRCasFinder,CRT matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 7, identity: 0.781

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
aattataaaagatgctgataaaaagattatta	Protospacer
* **** ***********.******* . * *

26. spacer 1.6|546072|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024873 (Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence) position: , mismatch: 8, identity: 0.75

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
ttactcaaacaagttgaggcgacgattctaaa	Protospacer
*.. ********.** ***********. * *

27. spacer 1.7|546132|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047125 (Lactobacillus hilgardii strain FLUB plasmid unnamed4) position: , mismatch: 8, identity: 0.75

aaaaagaatttgggattaaagttacccatcag	CRISPR spacer
taaaagcttttgggattaaagttattcaaaat	Protospacer
 *****  ****************..**  *

28. spacer 5.2|4211918|32|NZ_CP009840|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaatgatgctgacgaaaatatggcac	Protospacer
********* *********.**** *   .*

29. spacer 5.2|4211918|32|NZ_CP009840|PILER-CR,CRISPRCasFinder,CRT matches to NC_019694 (Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaaagaagctgccaaaagagcatcaa	Protospacer
************ **** *****...  *.**

30. spacer 1.2|545832|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaaggtaagatgggcaagcttctagtagtt	CRISPR spacer
ttatgagaaagatgggcaagcttttagtggta	Protospacer
  * ..* ***************.****.**

31. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

32. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

33. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

34. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

35. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

36. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

37. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

38. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

39. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat-----	CRISPR spacer
attatctgattggcagtttctttaac-----tgttta	Protospacer
********* ***** *******..*     *

40. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

41. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

42. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

43. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

44. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

45. spacer 1.3|545892|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

46. spacer 2.4|671939|33|NZ_CP009840|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040366 (Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

ccgaaatcatcagatgtaattaagatttttgct	CRISPR spacer
aatggattatcagatgtaattaagtttttttcc	Protospacer
   ..**.**************** ***** *.

47. spacer 5.2|4211918|32|NZ_CP009840|PILER-CR,CRISPRCasFinder,CRT matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
tgctattgaagatgctgataaaaagaaacttg	Protospacer
  .****.**********.******** .* .

48. spacer 5.2|4211918|32|NZ_CP009840|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
gcacattacagacgctgacaaaaagaaagtta	Protospacer
.. .**** ***.**************  * *

49. spacer 1.4|545952|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
ctaacgagccgtgaacctcagcgcattcgcgt	Protospacer
... *.  ********** *****.******

50. spacer 1.6|546072|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

51. spacer 1.6|546072|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

52. spacer 1.6|546072|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

53. spacer 1.6|546072|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

118190 : 170273

Cronobacter_phage(14.29%)

transposase,tRNA,integrase,tail,lysis

attL 128741:128771|attR 170464:170494

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211184.1\|118190_118889_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_087768167.1\|119630_119738_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002211182.1\|120272_121961_+	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	1.8e-31	28.9
WP_002211181.1\|122120_123242_+	ribonuclease D	NA	NA	NA	NA
WP_002211180.1\|123478_123748_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_002211179.1\|123751_124564_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_002220631.1\|124588_125275_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_002211743.1\|125995_126268_+	YcgL domain-containing protein	NA	NA	NA	NA
WP_002215627.1\|126408_127494_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_002211740.1\|127564_128221_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_002211739.1\|128323_128770_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
128741:128771	attL	NA	NA	NA	NA
WP_002211738.1\|128796_130035_-\|integrase	site-specific integrase	Q20GI2	Phage_258-320	2.3e-121	53.3
WP_001297096.1\|131125_131905_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002215632.1\|132072_132333_-	excisionase family protein	Q859D3	Escherichia_coli_phage	1.7e-10	42.9
WP_071525537.1\|132632_133382_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	1.5e-54	48.5
WP_002211736.1\|133357_133804_+	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	3.9e-47	62.5
WP_002211735.1\|133877_134483_+	recombination protein NinG	A0A1P8DTE0	Proteus_phage	2.8e-56	56.9
WP_002215636.1\|134483_134873_+	antitermination protein	A0A1W6JNX1	Morganella_phage	1.4e-45	68.8
WP_002215638.1\|134876_135095_+	ash family protein	NA	NA	NA	NA
WP_002211732.1\|135143_135707_+	hypothetical protein	B6SD63	Bacteriophage	9.4e-30	58.0
WP_002211731.1\|136130_136340_+	hypothetical protein	NA	NA	NA	NA
WP_002215644.1\|136336_136612_-	hypothetical protein	NA	NA	NA	NA
WP_002430108.1\|136857_137055_+	hypothetical protein	B6SD15	Bacteriophage	4.9e-18	64.4
WP_002211730.1\|137085_137598_+	lysozyme	I6PBN2	Cronobacter_phage	9.7e-50	61.6
WP_002211729.1\|137582_138041_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	4.9e-21	45.3
WP_002211727.1\|138586_139300_+	phage antirepressor KilAC domain-containing protein	Q5MBW0	Stx1-converting_phage	7.6e-69	60.2
WP_002211725.1\|139756_140392_+	hypothetical protein	I6S676	Salmonella_phage	7.2e-87	71.4
WP_002211724.1\|140422_140872_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.0e-47	72.9
WP_002211723.1\|140875_141460_+	hypothetical protein	A0A0R6PHH0	Moraxella_phage	4.8e-69	70.7
WP_002209743.1\|141507_142716_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211722.1\|142720_143695_+	hypothetical protein	A0A1W6JNY3	Morganella_phage	2.3e-153	81.1
WP_002228445.1\|143694_144423_+	hypothetical protein	A0A1B0VMH0	Pseudomonas_phage	4.6e-61	51.4
WP_002228446.1\|144441_145083_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	3.8e-59	54.1
WP_002211721.1\|145083_146196_+	hypothetical protein	I6PD76	Cronobacter_phage	6.0e-121	58.2
WP_002211720.1\|146317_147091_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.8e-69	62.3
WP_002211719.1\|147104_148310_+	Ig-like domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	1.8e-142	79.2
WP_002211718.1\|148357_148840_+	hypothetical protein	G8C7P9	Escherichia_phage	6.4e-27	46.1
WP_002211717.1\|148836_149091_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.2e-18	53.1
WP_002211716.1\|149092_149443_+	hypothetical protein	I6PD77	Cronobacter_phage	6.9e-31	56.0
WP_002211715.1\|149444_150029_+	hypothetical protein	G8C7Q1	Escherichia_phage	3.6e-48	52.1
WP_002211714.1\|150025_150433_+	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_002211713.1\|150498_151419_+	Ig-like domain-containing protein	I6PBN6	Cronobacter_phage	4.4e-61	49.1
WP_002211712.1\|151431_151743_+	hypothetical protein	I6PDG2	Cronobacter_phage	1.4e-30	58.3
WP_071525538.1\|151790_152051_+	DUF1799 domain-containing protein	A0A0S2SY90	Pseudomonas_phage	3.7e-13	50.0
WP_002211711.1\|152051_155555_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	5.2e-118	33.2
WP_002211710.1\|155557_155899_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.7e-21	50.0
WP_002213759.1\|156203_156662_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211709.1\|156782_157535_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	9.4e-102	67.7
WP_002211708.1\|157537_158248_+	C40 family peptidase	K7P6F5	Enterobacteria_phage	1.3e-108	76.8
WP_002211707.1\|158508_159141_+	hypothetical protein	NA	NA	NA	NA
WP_002211706.1\|159219_159651_-	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	2.5e-30	58.4
WP_002211705.1\|159774_159942_+	hypothetical protein	G9L6D7	Escherichia_phage	5.2e-13	61.8
WP_002211704.1\|160015_161023_+	hypothetical protein	A0A2H4J0P1	uncultured_Caudovirales_phage	4.1e-36	33.0
WP_002214482.1\|161121_161673_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	9.5e-27	58.0
WP_002211701.1\|161815_162031_+	hypothetical protein	NA	NA	NA	NA
WP_002211700.1\|162086_162707_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	3.2e-55	57.0
WP_002211699.1\|162748_162913_+	hypothetical protein	NA	NA	NA	NA
WP_002359202.1\|162881_163103_-	hypothetical protein	NA	NA	NA	NA
WP_002211698.1\|163278_166482_+	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	60.5
WP_002211697.1\|166481_167480_+	hypothetical protein	NA	NA	NA	NA
WP_002211696.1\|167496_168414_+	hypothetical protein	NA	NA	NA	NA
WP_002211695.1\|168424_168844_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	5.7e-08	42.0
WP_002209743.1\|169064_170273_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
170464:170494	attR	NA	NA	NA	NA

DBSCAN-SWA_2

874896 : 930147

uncultured_virus(20.0%)

tRNA,transposase,integrase

attL 874789:874848|attR 929581:930292

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
874789:874848	attL	NA	NA	NA	NA
WP_002213775.1\|874896_875355_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002209726.1\|875633_876644_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002209727.1\|876643_877525_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_002209728.1\|877681_878344_+	DedA family protein	NA	NA	NA	NA
WP_002209729.1\|878574_879489_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA
WP_002209730.1\|879737_881042_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_002209731.1\|881161_881884_+	cell division protein DedD	NA	NA	NA	NA
WP_002209732.1\|882195_882705_+	colicin V production protein	NA	NA	NA	NA
WP_002209733.1\|882717_884235_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.0e-86	42.4
WP_002209734.1\|884481_885054_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_002216029.1\|885578_886361_+	histidine ABC transporter substrate-binding protein HisJ	NA	NA	NA	NA
WP_002209736.1\|886463_887150_+	histidine ABC transporter permease HisQ	NA	NA	NA	NA
WP_002209737.1\|887146_887863_+	ABC transporter permease	NA	NA	NA	NA
WP_002209738.1\|887876_888674_+	histidine ABC transporter ATP-binding protein HisP	G9BWD6	Planktothrix_phage	7.1e-23	33.5
WP_002209739.1\|888797_889706_-	TIGR01777 family protein	NA	NA	NA	NA
WP_002209740.1\|890059_890752_+	EAL domain-containing protein	NA	NA	NA	NA
WP_002227850.1\|890952_891528_+	phosphodiesterase	NA	NA	NA	NA
WP_002209742.1\|891749_892298_+	NUDIX hydrolase YfcD	NA	NA	NA	NA
WP_002222248.1\|892414_893671_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_002209743.1\|893810_895019_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_071525544.1\|895082_896585_+	penicillin-binding protein 1C	NA	NA	NA	NA
WP_002209745.1\|896797_897043_-	helix-turn-helix domain-containing protein	A0A2I7S995	Vibrio_phage	7.2e-19	64.2
WP_002216002.1\|897715_898297_+	hypothetical protein	NA	NA	NA	NA
WP_002209746.1\|898564_898966_+	DUF1240 domain-containing protein	NA	NA	NA	NA
WP_002209748.1\|899198_899600_+	DUF1240 domain-containing protein	NA	NA	NA	NA
WP_002209749.1\|899611_900184_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002227852.1\|900207_900459_-	hypothetical protein	NA	NA	NA	NA
WP_002209751.1\|900497_900737_-	hypothetical protein	NA	NA	NA	NA
WP_002209752.1\|901545_903462_+	autotransporter adhesin YapC	NA	NA	NA	NA
WP_002224869.1\|903585_903708_+	hypothetical protein	NA	NA	NA	NA
WP_002209753.1\|903996_904578_+	AbiEi antitoxin N-terminal domain-containing protein	NA	NA	NA	NA
WP_002209743.1\|904979_906188_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209756.1\|906639_908847_+	DUF4401 domain-containing protein	NA	NA	NA	NA
WP_002209757.1\|908839_909370_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA
WP_002209758.1\|909528_911910_+	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA
WP_002209759.1\|911988_913617_-	hypothetical protein	NA	NA	NA	NA
WP_002209762.1\|914089_914941_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-49	41.1
WP_002209763.1\|914966_915956_+	aldo/keto reductase	NA	NA	NA	NA
WP_002209764.1\|916010_916904_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000255944.1\|916997_918020_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|918019_918799_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002215253.1\|919165_919471_-	hypothetical protein	NA	NA	NA	NA
WP_002209765.1\|919567_919969_-	hypothetical protein	NA	NA	NA	NA
WP_002209766.1\|919950_921270_-	phosphatase PAP2/dual specificity phosphatase family protein	NA	NA	NA	NA
WP_002209767.1\|921262_923026_-	bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_002209768.1\|923022_923655_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_002209769.1\|923664_924594_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_002209770.1\|924586_925189_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_002354559.1\|925588_925795_-	hypothetical protein	NA	NA	NA	NA
WP_079866998.1\|926006_926285_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y6Q1	Salmonella_phage	4.2e-31	73.5
WP_002215266.1\|926367_926706_+	hypothetical protein	NA	NA	NA	NA
WP_002228356.1\|926841_927339_+	hypothetical protein	NA	NA	NA	NA
WP_002215268.1\|927452_927653_+	hypothetical protein	NA	NA	NA	NA
WP_002215270.1\|927911_928094_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_002209774.1\|928448_929315_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.2e-30	34.1
WP_002209775.1\|929329_929542_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_002213775.1\|929688_930147_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
929581:930292	attR	NA	NA	NA	NA

DBSCAN-SWA_3

988076 : 1056160

Bacillus_phage(12.5%)

tRNA,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042669057.1\|988076_988535_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209814.1\|988753_989935_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_002209815.1\|989946_990582_-	YfgM family protein	NA	NA	NA	NA
WP_002209816.1\|990595_991870_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_002209817.1\|992078_993206_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_002209818.1\|993267_994305_-	cytoskeleton protein RodZ	NA	NA	NA	NA
WP_002209819.1\|994294_995044_-	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_002209820.1\|995197_996394_-\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_002209821.1\|996655_997084_-	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.1e-17	39.4
WP_002215515.1\|997410_999831_-	peptidase inhibitor family I36 protein	NA	NA	NA	NA
WP_146737630.1\|1000520_1004909_+	autotransporter YapA	NA	NA	NA	NA
WP_002215508.1\|1005466_1008625_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_002215505.1\|1008590_1008911_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_071525548.1\|1008989_1009115_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002209828.1\|1009248_1010202_-	enhanced serine sensitivity protein SseB	NA	NA	NA	NA
WP_002209829.1\|1010280_1011579_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	9.7e-38	39.0
WP_002209830.1\|1011718_1011919_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_002209831.1\|1011948_1012284_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_002209832.1\|1012286_1014239_-	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	1.8e-96	37.8
WP_002209833.1\|1014481_1015006_-	co-chaperone HscB	NA	NA	NA	NA
WP_002209834.1\|1015116_1015440_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	7.8e-21	47.7
WP_002209835.1\|1015709_1016096_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	77.3
WP_002209836.1\|1016126_1017356_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	8.6e-36	33.1
WP_002222202.1\|1017409_1017904_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_002217034.1\|1018059_1018833_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_002213305.1\|1018951_1019755_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_002213775.1\|1019958_1020417_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002217028.1\|1020563_1021586_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_002213310.1\|1021576_1022251_-	DUF1007 family protein	NA	NA	NA	NA
WP_002213314.1\|1022392_1023754_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_002213316.1\|1023750_1024908_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_002227864.1\|1025259_1025808_-	attachment invasion locus protein Ail	A0A1B0VBR9	Salmonella_phage	6.8e-25	36.7
WP_002223388.1\|1025917_1026100_-	hypothetical protein	NA	NA	NA	NA
WP_002211552.1\|1026251_1027505_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.8e-98	52.5
WP_002211553.1\|1028045_1029236_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_002211554.1\|1030768_1031107_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_002211555.1\|1031121_1032744_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.1e-94	36.5
WP_002211556.1\|1032903_1034241_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.2e-11	37.4
WP_072120864.1\|1034203_1035226_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_002216114.1\|1035274_1036711_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.1e-13	23.8
WP_002213759.1\|1036931_1037390_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002216113.1\|1037379_1037604_-	hypothetical protein	NA	NA	NA	NA
WP_002211559.1\|1038616_1039177_+	hypothetical protein	NA	NA	NA	NA
WP_002211560.1\|1039628_1040078_+	hypothetical protein	NA	NA	NA	NA
WP_032487261.1\|1040385_1040493_+	hypothetical protein	NA	NA	NA	NA
WP_002211561.1\|1040489_1044380_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	8.8e-127	59.5
WP_002211562.1\|1044695_1046156_+	membrane-bound lytic murein transglycosylase MltF	I1VXB7	Halocynthia_phage	7.1e-13	41.4
WP_002211563.1\|1046264_1046867_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	6.5e-05	34.1
WP_002211564.1\|1046937_1047633_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_002211565.1\|1047859_1048747_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_002211566.1\|1048954_1049794_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_002211567.1\|1049955_1050216_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	9.3e-17	53.5
WP_002213775.1\|1050371_1050830_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002211568.1\|1051031_1051412_-	holo-ACP synthase	NA	NA	NA	NA
WP_002211569.1\|1051411_1052143_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_042669058.1\|1053178_1054132_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.2e-179	99.7
WP_002211571.1\|1054810_1056160_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_4

1402484 : 1457589

Escherichia_phage(50.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023278042.1\|1402484_1403507_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7
WP_001297096.1\|1403506_1404286_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002418742.1\|1404336_1405236_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_002208732.1\|1405291_1406038_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-35	41.1
WP_002208733.1\|1406018_1406672_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_002208734.1\|1406668_1407337_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_002208735.1\|1407349_1408138_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002208736.1\|1408465_1409299_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_002208738.1\|1409608_1409812_+	oxalurate catabolism protein HpxX	NA	NA	NA	NA
WP_002208739.1\|1409808_1411206_+	AtzE family amidohydrolase	NA	NA	NA	NA
WP_002264506.1\|1411315_1411702_+	oxalurate catabolism protein HpxZ	NA	NA	NA	NA
WP_002208741.1\|1411929_1413129_+	MFS transporter	NA	NA	NA	NA
WP_002208742.1\|1413288_1414062_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_002208743.1\|1414058_1414400_+	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_002208744.1\|1414571_1415084_+	transcriptional repressor MprA	NA	NA	NA	NA
WP_002208745.1\|1415467_1416640_+	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_002208746.1\|1416678_1418214_+	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_002208747.1\|1418336_1419503_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_002216643.1\|1419754_1420192_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	2.6e-11	36.6
WP_002208749.1\|1420361_1421111_+	DTW domain-containing protein	NA	NA	NA	NA
WP_002208750.1\|1421153_1423796_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002208751.1\|1423971_1425327_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_002208752.1\|1425388_1425730_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_002217405.1\|1431832_1434406_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.4e-128	34.9
WP_002209471.1\|1434535_1435267_-	polyphenol oxidase	NA	NA	NA	NA
WP_002209470.1\|1435268_1436246_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_002209469.1\|1436381_1437113_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002209468.1\|1437467_1437830_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_002213775.1\|1438160_1438619_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_000255944.1\|1439921_1440944_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002209466.1\|1441798_1442017_+	hypothetical protein	NA	NA	NA	NA
WP_002209465.1\|1442121_1443243_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_002228238.1\|1443255_1444326_-	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.5e-89	51.4
WP_002209463.1\|1444558_1445275_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_002209462.1\|1447370_1448138_+	YdiY family protein	NA	NA	NA	NA
WP_002213759.1\|1448440_1448899_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209461.1\|1449110_1449458_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_002222284.1\|1449538_1450279_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002209459.1\|1450317_1450866_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002209458.1\|1450887_1451136_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_002209456.1\|1451363_1452725_-	signal recognition particle protein	NA	NA	NA	NA
WP_002209455.1\|1452890_1453682_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_144406008.1\|1454464_1455418_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.8e-162	97.6
WP_002213759.1\|1457130_1457589_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1729155 : 1781487

Escherichia_phage(20.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|1729155_1729614_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210156.1\|1729809_1730262_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_002210155.1\|1730301_1730529_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_002210154.1\|1730533_1730854_-	primosomal replication protein N	NA	NA	NA	NA
WP_002210153.1\|1730859_1731252_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_002210152.1\|1731618_1732320_-	esterase	NA	NA	NA	NA
WP_000255944.1\|1732376_1733399_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_042669063.1\|1733398_1734178_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.0e-138	99.2
WP_002210151.1\|1735258_1736152_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002210150.1\|1736413_1737118_+	pirin family protein	NA	NA	NA	NA
WP_002210149.1\|1737828_1738728_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.0e-49	44.4
WP_002228200.1\|1738790_1740764_+	penicillin-binding protein activator	NA	NA	NA	NA
WP_002210147.1\|1740847_1741201_+	YraN family protein	NA	NA	NA	NA
WP_002210146.1\|1741471_1742062_+	DnaA initiator-associating protein DiaA	A0A067XQR2	Caulobacter_phage	3.2e-12	32.0
WP_002210145.1\|1742072_1742648_+	divisome-associated lipoprotein YraP	NA	NA	NA	NA
WP_002210144.1\|1742854_1743580_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_002210143.1\|1743576_1744230_-	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA
WP_002210142.1\|1744471_1746808_-	aerobic respiration two-component sensor histidine kinase ArcB	A0A1V0SGX0	Hokovirus	9.9e-41	30.4
WP_002210140.1\|1747071_1747995_-	TIGR01212 family radical SAM protein	NA	NA	NA	NA
WP_002229651.1\|1748817_1753284_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_002210138.1\|1753293_1754712_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002210137.1\|1755152_1755638_+	hypothetical protein	NA	NA	NA	NA
WP_002216203.1\|1755790_1756306_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.6e-28	55.6
WP_002210135.1\|1756311_1756953_-	stringent starvation protein A	NA	NA	NA	NA
WP_002230558.1\|1757132_1757330_+	hypothetical protein	NA	NA	NA	NA
WP_002210133.1\|1757326_1757719_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_002210132.1\|1757733_1758162_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_002210131.1\|1758475_1759603_-	cell division protein ZapE	NA	NA	NA	NA
WP_002210130.1\|1759826_1760231_+	DUF1043 family protein	NA	NA	NA	NA
WP_002218066.1\|1760501_1761875_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	7.4e-20	28.2
WP_002213775.1\|1761991_1762450_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210128.1\|1762675_1763764_+	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IRD3	uncultured_Mediterranean_phage	2.1e-09	31.8
WP_002210127.1\|1763944_1765207_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002210126.1\|1765360_1765615_-	BolA family iron metabolism protein IbaG	NA	NA	NA	NA
WP_002210125.1\|1765761_1766064_-	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA
WP_002210124.1\|1766099_1766723_-	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_002210123.1\|1766735_1767293_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_002210122.1\|1767297_1768080_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_002210121.1\|1768297_1769116_-	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	2.2e-19	31.7
WP_002210120.1\|1769380_1770355_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_002210119.1\|1770465_1771452_+	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	6.0e-40	30.8
WP_002228203.1\|1771700_1772264_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	9.6e-59	83.0
WP_002218352.1\|1772260_1772824_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_002210117.1\|1772807_1773353_+	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
WP_002210116.1\|1773359_1774085_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-22	28.4
WP_002210115.1\|1774146_1775580_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_002213952.1\|1776008_1776491_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_002210113.1\|1776796_1777651_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-05	30.0
WP_002210112.1\|1777647_1777920_+	PTS phosphocarrier protein NPr	NA	NA	NA	NA
WP_002210111.1\|1778257_1779193_+	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	1.5e-48	38.5
WP_002210110.1\|1779204_1779669_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_002210109.1\|1779806_1780193_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_001436717.1\|1780533_1781487_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.3e-180	100.0

DBSCAN-SWA_6

1911053 : 1993333

Bacillus_phage(16.67%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002212105.1\|1911053_1912400_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002212104.1\|1912402_1912948_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002212103.1\|1912947_1914264_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_002213885.1\|1914389_1915478_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_100067904.1\|1916235_1917589_+\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7
WP_002212100.1\|1918704_1919145_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002212099.1\|1919151_1920633_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002212098.1\|1920700_1921198_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002212097.1\|1921721_1922240_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002212095.1\|1922391_1922670_-	hypothetical protein	NA	NA	NA	NA
WP_002212093.1\|1923140_1924052_-	maltose operon protein MalM	NA	NA	NA	NA
WP_002212092.1\|1924292_1925564_-	maltoporin	NA	NA	NA	NA
WP_002212091.1\|1925634_1926744_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	G9BWD6	Planktothrix_phage	5.0e-27	35.5
WP_002221973.1\|1926747_1926984_-	hypothetical protein	NA	NA	NA	NA
WP_002212089.1\|1927545_1928757_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_002212088.1\|1928943_1930521_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_002212087.1\|1930534_1931425_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_002212086.1\|1931567_1931975_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_002212085.1\|1932109_1933756_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_002212084.1\|1934125_1935511_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_002228189.1\|1936078_1937764_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_002212081.1\|1937833_1942741_+	hemagglutinin repeat-containing protein	NA	NA	NA	NA
WP_002212080.1\|1942836_1946532_-	methionine synthase	A0A140XBC7	Dickeya_phage	4.6e-24	82.5
WP_002212079.1\|1947710_1949438_-	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA
WP_002212078.1\|1949693_1951001_-	isocitrate lyase	NA	NA	NA	NA
WP_002212077.1\|1951047_1952646_-	malate synthase A	NA	NA	NA	NA
WP_002212076.1\|1953066_1953996_-	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_002210692.1\|1960592_1962182_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.2e-68	49.4
WP_002210691.1\|1962241_1963528_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_002355296.1\|1963675_1964329_-	DUF1481 domain-containing protein	NA	NA	NA	NA
WP_002210689.1\|1964378_1964654_-	DNA-binding protein HU-alpha	A7KV42	Bacillus_phage	3.6e-19	55.6
WP_002210688.1\|1964842_1965433_-	YjaG family protein	NA	NA	NA	NA
WP_002210687.1\|1965478_1966219_-	deoxyribonuclease V	NA	NA	NA	NA
WP_002210686.1\|1966248_1967316_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_002210685.1\|1967434_1968220_-	hypothetical protein	NA	NA	NA	NA
WP_002210684.1\|1968312_1969095_-	NAD(+) diphosphatase	NA	NA	NA	NA
WP_002210683.1\|1969191_1969701_+	sigma D regulator	NA	NA	NA	NA
WP_002210682.1\|1970076_1972122_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_002210681.1\|1972108_1972783_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_002210680.1\|1972772_1973570_+	HesA/MoeB/ThiF family protein	A0A1V0SAV8	Catovirus	1.6e-11	27.8
WP_002217275.1\|1973566_1973782_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_002217273.1\|1973783_1974599_+	thiazole synthase	NA	NA	NA	NA
WP_002210678.1\|1974591_1975722_+	2-iminoacetate synthase ThiH	NA	NA	NA	NA
WP_002213775.1\|1976153_1976612_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210677.1\|1976738_1980959_-	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	8.5e-67	27.0
WP_002210676.1\|1981087_1985116_-	DNA-directed RNA polymerase subunit beta	A0A0N9R0J7	Chrysochromulina_ericina_virus	1.2e-22	29.0
WP_042669064.1\|1985458_1985854_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_002210674.1\|1985920_1986418_-	50S ribosomal protein L10	NA	NA	NA	NA
WP_002210673.1\|1986782_1987487_-	50S ribosomal protein L1	NA	NA	NA	NA
WP_002210672.1\|1987490_1987919_-	50S ribosomal protein L11	NA	NA	NA	NA
WP_002210671.1\|1988109_1988655_-	transcription termination/antitermination protein NusG	A0A291AUS6	Sinorhizobium_phage	5.9e-13	28.3
WP_002210670.1\|1988656_1989040_-	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_002210669.1\|1989290_1990475_-	elongation factor Tu	A0A2K9L516	Tupanvirus	2.0e-13	26.9
WP_001297096.1\|1991531_1992311_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|1992310_1993333_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0

DBSCAN-SWA_7

2942387 : 2988859

Bodo_saltans_virus(20.0%)

tRNA,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210509.1\|2942387_2945204_+\|tRNA	isoleucine--tRNA ligase	A0A2H4UVG0	Bodo_saltans_virus	1.0e-63	26.1
WP_002210508.1\|2945203_2945713_+	signal peptidase II	NA	NA	NA	NA
WP_002228112.1\|2945780_2946239_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_002210506.1\|2946219_2947173_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_042669068.1\|2947554_2948013_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210504.1\|2948465_2949287_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_002224759.1\|2949759_2950935_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	6.9e-51	34.3
WP_002210502.1\|2950950_2954184_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_002210501.1\|2954411_2955026_-	LysE family translocator	NA	NA	NA	NA
WP_002210499.1\|2955349_2956150_+	threonine/serine exporter ThrE family protein	NA	NA	NA	NA
WP_002210498.1\|2956146_2956602_+	threonine/serine exporter	NA	NA	NA	NA
WP_002210497.1\|2956751_2957234_+	type 3 dihydrofolate reductase	A0A219UQN5	Bacillus_phage	4.7e-30	42.6
WP_002213775.1\|2957445_2957904_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_071525509.1\|2958345_2958660_+	DUF3757 domain-containing protein	NA	NA	NA	NA
WP_002210493.1\|2958786_2959251_+	DUF3757 domain-containing protein	NA	NA	NA	NA
WP_002210492.1\|2959340_2960210_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA
WP_002210491.1\|2960226_2960604_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_002210490.1\|2960617_2961436_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_002210489.1\|2961428_2962424_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_002210488.1\|2962407_2963712_-	peptidylprolyl isomerase SurA	NA	NA	NA	NA
WP_002228111.1\|2963779_2966122_-	LPS assembly protein LptD	NA	NA	NA	NA
WP_002210486.1\|2966306_2967140_+	co-chaperone DjlA	NA	NA	NA	NA
WP_002210485.1\|2967437_2968058_-\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_002214747.1\|2969280_2970024_-	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_002210482.1\|2970353_2971367_+	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_002210481.1\|2971377_2971938_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002210480.1\|2971946_2973449_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002210479.1\|2973611_2974130_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_002210478.1\|2974203_2974647_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002210477.1\|2974679_2976524_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002210476.1\|2976516_2977500_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002210475.1\|2977517_2980106_+	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	1.9e-77	28.7
WP_002210474.1\|2980209_2982558_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-14	32.9
WP_002228110.1\|2982570_2983143_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_002228109.1\|2983167_2984790_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002214739.1\|2984815_2985919_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002210473.1\|2985911_2986529_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_002214737.1\|2986534_2986900_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_002210471.1\|2986892_2987384_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002210470.1\|2987503_2988859_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_8

3009681 : 3066283

Escherichia_phage(50.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255944.1\|3009681_3010704_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002397472.1\|3010791_3011043_+	sugar transporter	NA	NA	NA	NA
WP_002210456.1\|3011283_3011886_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_002210455.1\|3011900_3013331_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_002210454.1\|3013332_3014424_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_002210453.1\|3014426_3015989_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_002213775.1\|3016135_3016594_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210452.1\|3017022_3017238_-	hypothetical protein	NA	NA	NA	NA
WP_002216434.1\|3017915_3018872_+	transcriptional regulator LeuO	NA	NA	NA	NA
WP_002216437.1\|3019408_3021214_+	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	3.5e-38	23.2
WP_002228103.1\|3021673_3023401_+	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	7.8e-59	29.4
WP_002210448.1\|3023403_3023898_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002213759.1\|3024096_3024555_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210447.1\|3025059_3026070_+	catabolite repressor/activator	NA	NA	NA	NA
WP_002210446.1\|3026200_3026641_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_087768171.1\|3027098_3027188_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002210443.1\|3027742_3028201_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_002210442.1\|3028203_3029166_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_002210441.1\|3029162_3029480_+	cell division protein FtsL	NA	NA	NA	NA
WP_002210440.1\|3029545_3031309_+	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
WP_002210439.1\|3031295_3032783_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_002210438.1\|3032779_3034156_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_002210437.1\|3034149_3035232_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_002210436.1\|3035234_3036551_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_002210435.1\|3036550_3037753_+	cell division protein FtsW	NA	NA	NA	NA
WP_002210434.1\|3037749_3038820_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_002216457.1\|3038957_3040433_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_002210432.1\|3040425_3041346_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_002228100.1\|3041347_3042175_+	cell division protein FtsQ	NA	NA	NA	NA
WP_002210431.1\|3042201_3043458_+	cell division protein FtsA	NA	NA	NA	NA
WP_002210430.1\|3043530_3044682_+	cell division protein FtsZ	NA	NA	NA	NA
WP_002228285.1\|3044781_3045702_+	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA
WP_002210428.1\|3045868_3046393_-	DUF721 domain-containing protein	NA	NA	NA	NA
WP_002210427.1\|3046421_3046955_+	secA regulator SecM	NA	NA	NA	NA
WP_002210426.1\|3047032_3049747_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_002210424.1\|3050041_3050428_+	8-oxo-dGTP diphosphatase MutT	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	8.4e-06	30.4
WP_001297096.1\|3050689_3051469_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|3051468_3052491_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002210421.1\|3052769_3053165_-	DoxX family protein	NA	NA	NA	NA
WP_002210420.1\|3053468_3053753_-	YqjK-like family protein	NA	NA	NA	NA
WP_002210419.1\|3053749_3054145_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_002210418.1\|3054147_3054453_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_002210416.1\|3054607_3054988_-	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_002210415.1\|3055213_3055603_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_002210414.1\|3055599_3056298_-	DedA family protein	NA	NA	NA	NA
WP_002218957.1\|3056575_3057109_-	hypothetical protein	NA	NA	NA	NA
WP_002210412.1\|3057357_3058152_-	transcriptional regulator ExuR	NA	NA	NA	NA
WP_002353699.1\|3058414_3059716_-	MFS transporter	NA	NA	NA	NA
WP_002210410.1\|3060463_3061873_+	glucuronate isomerase	NA	NA	NA	NA
WP_002210409.1\|3062071_3063523_+	tagaturonate reductase	NA	NA	NA	NA
WP_002210408.1\|3063533_3065024_+	altronate dehydratase	NA	NA	NA	NA
WP_002210407.1\|3065176_3065707_+	YgjV family protein	NA	NA	NA	NA
WP_002213775.1\|3065824_3066283_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

3279772 : 3297281

Tupanvirus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211388.1\|3279772_3285592_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	1.3e-41	31.3
WP_002214915.1\|3285604_3287293_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	3.1e-36	25.0
WP_002211387.1\|3287300_3293759_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	8.5e-42	25.0
WP_001297096.1\|3293966_3294746_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|3294745_3295768_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_099156340.1\|3295849_3296146_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_002211384.1\|3296486_3297281_-	thymidylate synthase	R4IFY1	Cronobacter_phage	8.9e-119	62.9

DBSCAN-SWA_10

3451331 : 3527554

Escherichia_phage(22.22%)

tRNA,transposase,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255944.1\|3451331_3452354_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002213759.1\|3452935_3453394_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209965.1\|3453701_3455696_-	transketolase	NA	NA	NA	NA
WP_002209967.1\|3456186_3456939_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_071525520.1\|3457084_3457195_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002209968.1\|3457228_3457549_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_002209969.1\|3457708_3459688_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002209971.1\|3460894_3462049_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_002228059.1\|3462241_3462754_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_002209973.1\|3462851_3463559_+	deoxyribonuclease I	NA	NA	NA	NA
WP_002209975.1\|3463810_3464542_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_002209976.1\|3464567_3465527_+	glutathione synthase	NA	NA	NA	NA
WP_002209977.1\|3465642_3466206_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_002209978.1\|3466205_3466628_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_002209979.1\|3466807_3467692_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	3.1e-80	51.0
WP_002209980.1\|3467695_3468811_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	3.0e-96	50.7
WP_002209981.1\|3468919_3470044_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_002215609.1\|3470063_3470762_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002209983.1\|3470894_3471716_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_002209984.1\|3472003_3472558_+	YggT family protein	NA	NA	NA	NA
WP_002215612.1\|3472554_3472845_+	YggU family protein	NA	NA	NA	NA
WP_002215614.1\|3472944_3473538_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_002209987.1\|3473530_3474661_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_002224905.1\|3474850_3484183_-	phage minor structural protein	NA	NA	NA	NA
WP_002228655.1\|3484681_3484912_-	DUF2884 family protein	NA	NA	NA	NA
WP_002228656.1\|3484884_3485415_-	DUF2884 family protein	NA	NA	NA	NA
WP_002209989.1\|3485526_3486453_-	glutaminase B	NA	NA	NA	NA
WP_002209990.1\|3486563_3486890_-	YggL family protein	NA	NA	NA	NA
WP_002209991.1\|3486889_3487609_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_002228057.1\|3487946_3489062_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002209994.1\|3489239_3489512_+	oxidative damage protection protein	NA	NA	NA	NA
WP_002209995.1\|3489694_3490771_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_002209997.1\|3491070_3492171_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002209998.1\|3492274_3494308_+	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	4.5e-05	26.1
WP_002209999.1\|3494390_3495374_-	ABC transporter permease	NA	NA	NA	NA
WP_002210000.1\|3495406_3496906_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-19	31.7
WP_002210001.1\|3496951_3497911_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002210002.1\|3498466_3500629_-	ornithine decarboxylase SpeF	NA	NA	NA	NA
WP_002210005.1\|3501957_3502593_-	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_086016632.1\|3503199_3503897_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.3e-60	48.5
WP_002210008.1\|3503992_3504760_-	hypothetical protein	NA	NA	NA	NA
WP_002210009.1\|3504746_3507044_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_002210010.1\|3507059_3507695_-	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002216110.1\|3508919_3509114_-	hypothetical protein	NA	NA	NA	NA
WP_016590715.1\|3509277_3509625_-	hypothetical protein	NA	NA	NA	NA
WP_002210011.1\|3509768_3511991_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_002210012.1\|3512005_3514354_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.1e-18	33.3
WP_002210013.1\|3514350_3516999_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.8e-92	29.5
WP_002210014.1\|3517416_3517908_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002228049.1\|3517911_3519648_-	OmpA family protein	NA	NA	NA	NA
WP_002210015.1\|3519647_3520334_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002211664.1\|3520330_3521683_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002215896.1\|3521694_3523239_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002211662.1\|3523281_3523782_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002211661.1\|3524983_3525139_-	hypothetical protein	NA	NA	NA	NA
WP_002215900.1\|3526057_3526453_-	lipoprotein	NA	NA	NA	NA
WP_002215902.1\|3526903_3527554_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_11

3669721 : 3675893

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001297096.1\|3669721_3670501_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|3670500_3671523_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002215951.1\|3672127_3672445_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.0e-13	48.1
WP_002210705.1\|3672450_3672765_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_002210707.1\|3673113_3674202_-	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.4e-114	60.4
WP_002215950.1\|3674198_3675158_-	toprim domain-containing protein	A0A1W6JPG0	Morganella_phage	1.6e-50	41.0
WP_002215949.1\|3675150_3675693_-	ash family protein	NA	NA	NA	NA
WP_002210709.1\|3675692_3675893_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.6e-08	51.7

DBSCAN-SWA_12

3747571 : 3858777

Enterobacteria_phage(15.15%)

transposase,tRNA,protease,coat,holin,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|3747571_3748030_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002220180.1\|3748258_3749962_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	9.4e-57	31.5
WP_002218281.1\|3749984_3751457_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_002218278.1\|3751514_3752111_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_002228035.1\|3752475_3754524_+\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	1.4e-19	28.5
WP_002214199.1\|3754755_3755649_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002214197.1\|3755686_3756535_-	DMT family transporter	NA	NA	NA	NA
WP_002214195.1\|3756880_3757744_+	xanthosine phosphorylase	Q5YBA4	Grouper_iridovirus	2.3e-51	40.7
WP_002213775.1\|3758672_3759131_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210776.1\|3759545_3760475_+	DUF4097 domain-containing protein	NA	NA	NA	NA
WP_002228612.1\|3760774_3761713_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_002210778.1\|3761786_3761966_-	hypothetical protein	NA	NA	NA	NA
WP_002210780.1\|3762304_3763240_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_002210781.1\|3763360_3765073_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_002210782.1\|3765282_3765822_+	class IV adenylate cyclase	NA	NA	NA	NA
WP_002214185.1\|3765847_3766189_-	HNH nuclease family protein	NA	NA	NA	NA
WP_002210785.1\|3766501_3767605_+	suppressor of fused domain protein	NA	NA	NA	NA
WP_002210786.1\|3767789_3768038_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_002210787.1\|3768245_3769082_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.1e-17	30.1
WP_002210788.1\|3769118_3770048_+	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210789.1\|3770150_3771011_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_002210790.1\|3771013_3771895_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_002210791.1\|3772140_3772614_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.7e-37	50.7
WP_002210792.1\|3773048_3774317_+	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210793.1\|3774440_3776042_+	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_002210794.1\|3776041_3777118_+	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_002210795.1\|3777114_3777951_+	urea ABC transporter ATP-binding protein UrtD	A0A285PWH2	Cedratvirus	4.2e-10	28.2
WP_002223523.1\|3778044_3778743_+	urea ABC transporter ATP-binding subunit UrtE	A0A2H4PQG7	Staphylococcus_phage	6.4e-12	25.6
WP_002210797.1\|3778857_3779715_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_002210798.1\|3779738_3781154_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_002210799.1\|3781308_3782163_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_002214183.1\|3782898_3783366_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_079993142.1\|3783369_3783831_+	hypothetical protein	NA	NA	NA	NA
WP_002210801.1\|3784091_3785246_+	ABC transporter permease	NA	NA	NA	NA
WP_002210802.1\|3785242_3786181_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.4e-23	33.5
WP_002353933.1\|3786315_3787014_+	ABC transporter permease	NA	NA	NA	NA
WP_002210804.1\|3787491_3788826_+	arginine/agmatine antiporter	NA	NA	NA	NA
WP_002210805.1\|3788895_3791202_+	arginine decarboxylase	NA	NA	NA	NA
WP_002210806.1\|3791319_3791523_-	hypothetical protein	NA	NA	NA	NA
WP_002210807.1\|3791647_3792538_-	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_002210809.1\|3792949_3794065_-	porin OmpF2	Q1MVN1	Enterobacteria_phage	2.1e-110	54.5
WP_002210810.1\|3794334_3796515_+	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	1.1e-44	26.3
WP_002210811.1\|3796582_3798022_-	catalase	A0A2K9L0T1	Tupanvirus	4.9e-99	38.8
WP_002210812.1\|3798382_3798925_+	membrane protein	NA	NA	NA	NA
WP_002221775.1\|3799181_3800390_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_002210814.1\|3801008_3802202_+	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA
WP_002210815.1\|3802259_3802769_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_002210816.1\|3802803_3803061_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	4.0e-20	54.9
WP_002210817.1\|3803064_3804195_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	7.6e-172	78.6
WP_002210818.1\|3804357_3806646_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.1e-286	64.9
WP_002210820.1\|3807139_3807868_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_002210821.1\|3808129_3810805_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	4.0e-102	34.4
WP_002228028.1\|3810992_3813866_+	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	3.8e-42	28.3
WP_002210824.1\|3813933_3814587_-	transcriptional regulator RcsB	NA	NA	NA	NA
WP_002216094.1\|3814589_3815162_-	Hpt domain-containing protein	NA	NA	NA	NA
WP_002216093.1\|3815329_3817282_-	phosphotransferase RcsD	NA	NA	NA	NA
WP_002210825.1\|3817305_3818460_-	MFS transporter	NA	NA	NA	NA
WP_002210826.1\|3819562_3820678_+	porin OmpC	Q1MVN1	Enterobacteria_phage	9.6e-111	57.6
WP_002213775.1\|3820879_3821338_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002213759.1\|3821590_3822049_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002228026.1\|3822838_3824005_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA
WP_002208871.1\|3824122_3824293_+	hypothetical protein	NA	NA	NA	NA
WP_002208870.1\|3824279_3825806_-	MFS transporter	NA	NA	NA	NA
WP_002208869.1\|3826182_3827211_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002208868.1\|3827284_3829072_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5
WP_002208867.1\|3829493_3830429_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA
WP_002208866.1\|3830600_3830843_-	DinI family protein	K7PKR6	Enterobacteria_phage	6.9e-22	65.0
WP_002208864.1\|3831048_3831771_-	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_002215470.1\|3832044_3832524_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_002208862.1\|3832734_3834039_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-90	46.0
WP_002208861.1\|3834747_3835560_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002208860.1\|3835535_3836330_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_002208859.1\|3836943_3837234_+	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_002208858.1\|3837279_3837897_+	ATP-binding protein	NA	NA	NA	NA
WP_002208857.1\|3837901_3838096_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-08	60.4
WP_002208856.1\|3838092_3839601_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	2.4e-104	44.2
WP_002208855.1\|3839622_3839991_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_002208854.1\|3839992_3840292_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002208853.1\|3840412_3841906_+\|coat	coat protein	NA	NA	NA	NA
WP_002208852.1\|3842172_3843579_+	DNA circularization protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_002208850.1\|3843575_3844631_+\|tail	tail protein	M1PVV2	Vibrio_phage	1.3e-37	27.2
WP_002215460.1\|3844646_3845243_+\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_002208848.1\|3845239_3845695_+	phage GP46 family protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002208847.1\|3845698_3846835_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	4.5e-31	30.5
WP_002215458.1\|3846831_3847092_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_002208846.1\|3847088_3847436_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	6.4e-21	41.3
WP_002208845.1\|3847532_3848312_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	7.1e-52	52.4
WP_002208843.1\|3848609_3849350_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_002208842.1\|3849640_3851077_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002208841.1\|3851202_3851565_-	hypothetical protein	NA	NA	NA	NA
WP_002208840.1\|3852264_3852753_-	hypothetical protein	NA	NA	NA	NA
WP_002208839.1\|3852765_3853914_-	HNH endonuclease	NA	NA	NA	NA
WP_002230704.1\|3854270_3854654_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	7.8e-36	66.7
WP_002208837.1\|3854884_3856681_-	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_002208836.1\|3856708_3856936_-	YejL family protein	NA	NA	NA	NA
WP_002208835.1\|3857113_3858118_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	3.1e-84	47.7
WP_002213775.1\|3858318_3858777_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

4059422 : 4125689

Escherichia_phage(16.67%)

transposase,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255944.1\|4059422_4060445_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002211286.1\|4061078_4061267_+	hypothetical protein	NA	NA	NA	NA
WP_002220006.1\|4061532_4062051_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_002224683.1\|4062119_4063871_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_002226586.1\|4064081_4064537_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_002213775.1\|4064705_4065164_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002213066.1\|4065353_4066415_-	porin OmpA	NA	NA	NA	NA
WP_002213065.1\|4066772_4067279_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_002213064.1\|4067507_4068143_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_002213063.1\|4068244_4070383_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_002213062.1\|4070412_4070859_-	YccF domain-containing protein	NA	NA	NA	NA
WP_002213061.1\|4071052_4073038_+	DNA helicase IV	A7KV33	Bacillus_phage	5.3e-19	28.4
WP_002213060.1\|4073098_4073563_-	methylglyoxal synthase	NA	NA	NA	NA
WP_002213058.1\|4073741_4074422_-	DUF2057 family protein	NA	NA	NA	NA
WP_002213056.1\|4074737_4075154_+	CoA-binding protein	NA	NA	NA	NA
WP_002213054.1\|4075262_4075580_-	heat shock protein HspQ	NA	NA	NA	NA
WP_002213052.1\|4075640_4076831_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	W6LLI2	Streptococcus_phage	2.1e-26	28.1
WP_002213049.1\|4076924_4077203_+	acylphosphatase	NA	NA	NA	NA
WP_002213046.1\|4077254_4077584_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_002213039.1\|4081229_4083647_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002213038.1\|4083800_4084547_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.3e-14	31.4
WP_002213036.1\|4085277_4085496_+	hypothetical protein	NA	NA	NA	NA
WP_002213034.1\|4085759_4086284_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_002213032.1\|4086273_4087557_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_002213030.1\|4087558_4088296_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002213028.1\|4088311_4089550_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_002213026.1\|4089542_4090262_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_002213025.1\|4090263_4091016_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_002213024.1\|4091018_4091807_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002228570.1\|4091893_4092334_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_002213017.1\|4092371_4092620_+	acyl carrier protein	NA	NA	NA	NA
WP_002213016.1\|4092718_4093567_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_002213014.1\|4094555_4095056_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002214707.1\|4095098_4096649_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002213011.1\|4096660_4098013_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002210015.1\|4098009_4098696_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002214568.1\|4098695_4100432_+	OmpA family protein	NA	NA	NA	NA
WP_002210014.1\|4100435_4100927_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002211927.1\|4101314_4103957_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.6e-92	31.6
WP_002211928.1\|4103959_4106308_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.5e-17	32.1
WP_002211929.1\|4106323_4108624_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002211930.1\|4108620_4109394_+	hypothetical protein	NA	NA	NA	NA
WP_002211931.1\|4109546_4109807_+	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002211932.1\|4109822_4112006_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002214564.1\|4112178_4112649_+	hypothetical protein	NA	NA	NA	NA
WP_002211935.1\|4114813_4116046_+	hypothetical protein	NA	NA	NA	NA
WP_002211936.1\|4116042_4119465_+	type VI secretion system membrane subunit	NA	NA	NA	NA
WP_002211937.1\|4119508_4121110_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_002211938.1\|4121127_4122186_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_002211939.1\|4122200_4122656_+	hypothetical protein	NA	NA	NA	NA
WP_002211940.1\|4122876_4124640_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002211941.1\|4124603_4125689_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_14

4245244 : 4281880

uncultured_virus(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209743.1\|4245244_4246453_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002217041.1\|4246415_4246712_-	biofilm formation regulator BssS	NA	NA	NA	NA
WP_002213110.1\|4247217_4247463_-	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	2.6e-13	51.3
WP_002213109.1\|4247775_4248822_-	dihydroorotase	NA	NA	NA	NA
WP_002213107.1\|4249056_4249344_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_002209743.1\|4249620_4250829_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002354074.1\|4250924_4254581_-	ribonuclease E	NA	NA	NA	NA
WP_002210927.1\|4255164_4256127_+	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA
WP_002213759.1\|4256346_4256805_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210928.1\|4256959_4257556_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002210930.1\|4257697_4258222_+	23S rRNA accumulation protein YceD	NA	NA	NA	NA
WP_002210931.1\|4258234_4258402_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_002210932.1\|4258435_4259470_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_002210933.1\|4259476_4260427_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_002210934.1\|4260464_4261394_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_002210935.1\|4261407_4262142_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	7.7e-16	33.1
WP_002220787.1\|4262295_4262532_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	7.7e-10	45.6
WP_002213079.1\|4262626_4263868_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_002213775.1\|4264066_4264525_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002213080.1\|4264940_4265747_+	aminodeoxychorismate lyase	NA	NA	NA	NA
WP_002217396.1\|4266035_4267061_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_002213082.1\|4267050_4267689_+	dTMP kinase	Q2Z0N0	Pseudomonas_phage	4.6e-25	36.1
WP_002213083.1\|4267688_4268711_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_002213084.1\|4268725_4269535_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_002213085.1\|4269840_4271274_+	PTS glucose transporter subunit IIBC	NA	NA	NA	NA
WP_002213759.1\|4271463_4271922_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002215853.1\|4272364_4273183_+	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_002213087.1\|4273356_4273710_+	purine nucleoside phosphoramidase	NA	NA	NA	NA
WP_002213088.1\|4273744_4274134_+	YcfL family protein	NA	NA	NA	NA
WP_002213089.1\|4274174_4274750_+	penicillin-binding protein activator LpoB	NA	NA	NA	NA
WP_002213090.1\|4274730_4275597_+	thiamine kinase	NA	NA	NA	NA
WP_002215854.1\|4275679_4276699_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_002213095.1\|4276826_4277369_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002213097.1\|4277743_4279048_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002215856.1\|4279585_4280155_+	hypothetical protein	NA	NA	NA	NA
WP_002213101.1\|4280162_4280576_+	hypothetical protein	NA	NA	NA	NA
WP_002209743.1\|4280671_4281880_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

DBSCAN-SWA_15

4367876 : 4385864

Escherichia_phage(50.0%)

coat,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255944.1\|4367876_4368899_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002215943.1\|4369305_4369695_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_002210859.1\|4369804_4370044_-	YebV family protein	NA	NA	NA	NA
WP_002210858.1\|4370251_4371241_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_002210857.1\|4371446_4373894_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002210856.1\|4374081_4374834_-	molecular chaperone	NA	NA	NA	NA
WP_002216611.1\|4374864_4375422_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216613.1\|4375442_4375973_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002210852.1\|4375978_4376533_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216616.1\|4377011_4379663_-	PqiB family protein	NA	NA	NA	NA
WP_002367629.1\|4379631_4380879_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_002210850.1\|4381110_4381608_+	GAF domain-containing protein	NA	NA	NA	NA
WP_002210849.1\|4381703_4382417_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_002210848.1\|4382436_4384509_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	4.0e-86	34.8
WP_002210847.1\|4384982_4385864_+\|protease	protease HtpX	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP009840.1|WP_002430108.1|136857_137055_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP009840.1|WP_002430108.1|136857_137055_+|hypothetical-protein

136857_137055_+

65 aa aa

118190-170273

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP009840_1	TypeI-F	1.7\|546132\|32\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546132-546163	32	140511-140542
NZ_CP009840_1	TypeI-F	1.8\|546192\|33\|NZ_CP009840\|CRISPRCasFinder,CRT,PILER-CR	546192-546224	33	146423-146391
NZ_CP009840_2	Orphan	2.1\|671757\|33\|NZ_CP009840\|PILER-CR,CRISPRCasFinder,CRT	671757-671789	33	148763-148795
NZ_CP009840_2	Orphan	2.5\|672000\|32\|NZ_CP009840\|CRISPRCasFinder,CRT	672000-672031	32	146077-146108

1. spacer 1.7|546132|32|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009840 position: 140511-140542, mismatch: 0

aaaaagaatttgggattaaagttacccatcag	CRISPR spacer
aaaaagaatttgggattaaagttacccatcag	Protospacer
********************************

2. spacer 1.8|546192|33|NZ_CP009840|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009840 position: 146423-146391, mismatch: 0

tcaatgcctgaatctctggcgtgatagctgcgg	CRISPR spacer
tcaatgcctgaatctctggcgtgatagctgcgg	Protospacer
*********************************

3. spacer 2.1|671757|33|NZ_CP009840|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009840 position: 148763-148795, mismatch: 0

ccggcggtgatggcaattctacgtgggttcgtt	CRISPR spacer
ccggcggtgatggcaattctacgtgggttcgtt	Protospacer
*********************************

4. spacer 2.5|672000|32|NZ_CP009840|CRISPRCasFinder,CRT matches to NZ_CP009840 position: 146077-146108, mismatch: 0

agactgatgcaagatggcggtatgcgtacaga	CRISPR spacer
agactgatgcaagatggcggtatgcgtacaga	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009841

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009840

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information