CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009905	Yersinia pestis Antiqua plasmid pCD, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP009904	Yersinia pestis Antiqua plasmid pMT, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP009906	Yersinia pestis Antiqua chromosome, complete genome	6 crisprs	DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,DinG	5	12	11	1
NZ_CP009903	Yersinia pestis Antiqua plasmid pPCP, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

25042 : 48441

Enterobacteria_phage(42.86%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213294.1\|25042_25450_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.7e-07	29.2
WP_042669180.1\|25473_25791_-\|transposase	transposase	NA	NA	NA	NA
WP_002213246.1\|25962_26421_-	hypothetical protein	NA	NA	NA	NA
WP_144405798.1\|26489_26708_+\|transposase	transposase	NA	NA	NA	NA
WP_002220934.1\|29368_31684_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	5.0e-279	51.5
WP_002213258.1\|31847_32399_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	5.9e-77	80.3
WP_002224338.1\|32417_32882_+	hypothetical protein	NA	NA	NA	NA
WP_002229829.1\|33020_33350_+	hypothetical protein	NA	NA	NA	NA
WP_086016640.1\|33449_34548_+\|transposase	IS3-like element ISYpe1 family transposase	S5WIU1	Leptospira_phage	1.4e-45	38.5
WP_002213267.1\|34696_35122_-	type III secretion system chaperone SycH	NA	NA	NA	NA
WP_002220893.1\|35895_37068_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.6e-220	95.4
WP_002213403.1\|37877_38270_-	YopE transcriptional regulator YerA	NA	NA	NA	NA
WP_002229754.1\|38463_39123_+	type III secretion system effector GTPase activator YopE	NA	NA	NA	NA
WP_002213360.1\|39262_39562_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002224342.1\|39554_39797_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_154020274.1\|40661_40898_-	hypothetical protein	NA	NA	NA	NA
WP_002213354.1\|41057_42023_-	ParB/RepB/Spo0J family plasmid partition protein	Q7Y3Y7	Yersinia_phage	3.1e-89	56.6
WP_002220902.1\|42019_43186_-	plasmid-partitioning protein SopA	Q7Y3Y6	Yersinia_phage	3.5e-196	85.3
WP_002229770.1\|45197_45827_-	hypothetical protein	NA	NA	NA	NA
WP_002213007.1\|46424_46973_-	hypothetical protein	NA	NA	NA	NA
WP_002213006.1\|47472_48441_+\|protease	T3SS effector cysteine protease YopT	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009904

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 96115

Salmonella_phage(76.47%)

integrase,tail,transposase,terminase

attL 1878:1892|attR 14732:14746

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002215095.1\|413_665_+	hypothetical protein	NA	NA	NA	NA
WP_002213141.1\|737_1301_+	DNA-binding protein	J9Q7G7	Salmonella_phage	2.2e-63	64.6
WP_002425587.1\|1330_1756_-	hypothetical protein	J9Q7S4	Salmonella_phage	7.5e-72	100.0
WP_002221186.1\|1770_5295_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.2
1878:1892	attL	NA	NA	NA	NA
WP_002211767.1\|5475_6711_-	AAA domain-containing protein	J9Q733	Salmonella_phage	3.0e-238	99.3
WP_042669178.1\|9510_10533_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	4.6e-200	99.4
WP_002228802.1\|11721_12108_+	hypothetical protein	NA	NA	NA	NA
WP_002353208.1\|12102_13206_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	5.2e-24	30.9
WP_002216410.1\|13965_14478_-	F1 capsule protein	NA	NA	NA	NA
WP_002211763.1\|14558_17060_-	F1 capsule-anchoring protein	NA	NA	NA	NA
14732:14746	attR	NA	NA	NA	NA
WP_002211762.1\|17084_17861_-	chaperone Caf1M	NA	NA	NA	NA
WP_002211761.1\|18188_19094_+	F1 operon transcriptional regulator Caf1R	NA	NA	NA	NA
WP_002221050.1\|19442_20651_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211760.1\|21119_22142_+\|transposase	IS110-like element IS1618 family transposase	NA	NA	NA	NA
WP_002211758.1\|24217_25981_-	phospholipase D	NA	NA	NA	NA
WP_002211757.1\|26058_26547_-	phospholipase D family protein	NA	NA	NA	NA
WP_002211756.1\|27285_27561_+	hypothetical protein	NA	NA	NA	NA
WP_002215065.1\|27583_28525_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.0e-68	54.8
WP_002211754.1\|28590_29211_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	6.5e-08	31.1
WP_002215068.1\|29410_29737_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002211753.1\|29736_29964_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_002211752.1\|30265_31471_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
WP_002215070.1\|31467_32439_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.5e-112	67.3
WP_002228775.1\|32817_34215_+	AAA family ATPase	NA	NA	NA	NA
WP_002211750.1\|34376_34577_-	hypothetical protein	NA	NA	NA	NA
WP_002211749.1\|35077_35755_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.9
WP_002211748.1\|35754_35976_+	hypothetical protein	NA	NA	NA	NA
WP_002215082.1\|35986_36406_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_002211747.1\|36459_37239_+	hypothetical protein	NA	NA	NA	NA
WP_002211746.1\|37637_38144_+	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	1.1e-08	29.5
WP_002211745.1\|38856_39087_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_002211744.1\|39159_41169_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	7.7e-26	30.3
WP_000255944.1\|41292_42315_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|42314_43094_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002211769.1\|43227_43836_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.8e-64	62.2
WP_002211770.1\|44137_47026_-\|tail	phage tail protein	J9Q6E3	Salmonella_phage	4.5e-11	33.1
WP_002211771.1\|47106_47685_-	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	3.4e-27	38.8
WP_002214118.1\|47741_52373_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	88.6
WP_002211773.1\|52394_52982_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	5.1e-103	92.8
WP_002211774.1\|52969_53767_-\|tail	tail protein	J9Q7R4	Salmonella_phage	1.4e-156	96.2
WP_002211775.1\|53759_54458_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	7.1e-136	99.1
WP_002221062.1\|54547_54883_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	1.1e-57	96.4
WP_000952684.1\|59509_59734_-	hypothetical protein	J9Q7F7	Salmonella_phage	4.2e-34	100.0
WP_000163862.1\|59859_60177_-	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_002211778.1\|60236_60983_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	5.2e-129	98.8
WP_002211779.1\|61057_61441_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.1e-66	98.4
WP_002211780.1\|61442_61916_-	hypothetical protein	J9Q711	Salmonella_phage	8.9e-82	99.4
WP_001027662.1\|61906_62251_-	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_002211781.1\|62348_63182_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.9e-152	99.6
WP_002211782.1\|63181_63616_-	hypothetical protein	J9Q7Y3	Salmonella_phage	3.1e-73	99.3
WP_002211783.1\|63659_64322_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	8.5e-107	97.2
WP_002211784.1\|64396_65272_-	hypothetical protein	J9Q710	Salmonella_phage	8.5e-163	99.7
WP_002211785.1\|65298_66132_-	hypothetical protein	J9Q7F4	Salmonella_phage	5.8e-137	91.3
WP_002211786.1\|66154_67729_-	hypothetical protein	J9Q7R1	Salmonella_phage	2.4e-301	99.2
WP_002211787.1\|67762_69019_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_002211788.1\|69021_69663_-	hypothetical protein	J9Q6D4	Salmonella_phage	1.2e-108	98.1
WP_000176291.1\|69858_70125_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_002211789.1\|70134_71025_-	hypothetical protein	J9Q7I6	Salmonella_phage	6.2e-169	99.7
WP_002211790.1\|71030_71285_-	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	97.6
WP_002211791.1\|71277_71916_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	4.7e-110	98.1
WP_002211792.1\|71912_72581_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	9.5e-114	98.2
WP_002228791.1\|72580_73279_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	9.6e-125	98.7
WP_002211794.1\|73343_74903_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	1.1e-293	99.0
WP_002214131.1\|74905_75184_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.4e-41	97.8
WP_002211796.1\|75243_75666_+	hypothetical protein	J9Q806	Salmonella_phage	4.1e-62	85.0
WP_002214134.1\|75670_76198_+	transcriptional regulator	J9Q6L0	Salmonella_phage	6.4e-81	98.0
WP_002211799.1\|76520_77171_+	hypothetical protein	J9Q754	Salmonella_phage	4.1e-114	99.5
WP_002214137.1\|77255_77483_+	hypothetical protein	NA	NA	NA	NA
WP_002213775.1\|77592_78051_-\|transposase	IS200/IS605-like element IS1541B family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002214145.1\|78259_78829_-	hypothetical protein	J9Q7Z7	Salmonella_phage	5.8e-104	100.0
WP_002213303.1\|78841_79588_-	hypothetical protein	J9Q6J5	Salmonella_phage	4.1e-134	96.4
WP_002213300.1\|81723_82809_-	exonuclease	J9Q7S9	Salmonella_phage	7.7e-206	98.6
WP_002214156.1\|83055_83328_+	hypothetical protein	NA	NA	NA	NA
WP_002214160.1\|84605_85250_-	hypothetical protein	J9Q739	Salmonella_phage	1.8e-122	98.1
WP_002214164.1\|85994_87059_+	replication protein RepA	J9Q7H0	Salmonella_phage	2.4e-188	98.6
WP_002222711.1\|87627_87840_-	hypothetical protein	J9Q7S8	Salmonella_phage	6.8e-34	95.7
WP_002227818.1\|87839_88175_-	hypothetical protein	J9Q7Z5	Salmonella_phage	5.2e-52	91.0
WP_002228796.1\|88171_88351_-	hypothetical protein	J9Q6J1	Salmonella_phage	5.8e-18	86.4
WP_002228797.1\|88391_88667_-	hypothetical protein	J9Q738	Salmonella_phage	1.7e-45	95.6
WP_002221119.1\|88734_89139_-	hypothetical protein	J9Q7G9	Salmonella_phage	1.7e-70	97.7
WP_001297096.1\|90229_91009_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002222868.1\|91086_91458_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	4.0e-61	87.8
WP_002222866.1\|91611_92442_-	hypothetical protein	J9Q7Z4	Salmonella_phage	9.3e-127	98.6
WP_002213439.1\|92445_92646_-	hypothetical protein	J9Q6J0	Salmonella_phage	1.1e-25	97.0
WP_161597819.1\|92736_93768_-	recombinase	J9Q736	Salmonella_phage	6.9e-196	99.1
WP_000920226.1\|93815_94082_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_002225551.1\|94081_95026_-	exonuclease	J9Q7S6	Salmonella_phage	1.3e-180	99.0
WP_002213132.1\|95086_96115_-	hypothetical protein	J9Q7Z3	Salmonella_phage	1.3e-165	98.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009906

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009906_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009906_1

588099-588488

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
GATTTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

6 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP009906_1

>merge|NZ_CP009906|1|588099-588488|CRISPRCasFinder,CRT,PILER-CR
TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCTGCCTGTGCGGCAGTGAACGAAAAGGTAAGATGGGCAAGCTTCTAGTAGTTTTTCTAAGCTGCCTGTGCAGCAGTGAACATTATCTGAATGGCATTTTCTTTGGCGCAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGCCATTCCGTGAACCTGAGCGCGTTCGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACACATCACTAGCGGTATCGAACAATTGAGCGAGTTTCTAAGCTGCCTGTGCGGCAGTGAACTCAGTCCCGTTATGGTGCTGGTGTTGCCCGTAAGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009906|1|1|588099-588488|CRISPRCasFinder
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACATCACTAGCGGTATCGAACAATTGAGCGAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAGTCCCGTTATGGTGCTGGTGTTGCCCGTAAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009906|1|1|588099-588488|CRT
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTAGTT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACATCACTAGCGGTATCGAACAATTGAGCGAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAGTCCCGTTATGGTGCTGGTGTTGCCCGTAAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009906|1|1|588156-588426|PILER-CR
GATTTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGGTAAGATGGGCAAGCTTCTAGTA
GTTTTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCA
GATTTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCG
CGATTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACATCACTAGCGGTATCGAACAATTGAGC
GAGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009906.1\|WP_002210191.1\|586758_587739_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP009906.1\|WP_002210193.1\|590676_591951_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002210197.1\|595394_596219_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009906.1\|WP_002221142.1\|583474_586762_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP009906.1\|WP_002211864.1\|577574_578078_+\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NZ_CP009906.1\|WP_002210199.1\|597203_598490_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP009906.1\|WP_002210200.1\|598761_599802_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NZ_CP009906.1\|WP_002211866.1\|579185_579740_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP009906.1\|WP_002210196.1\|594192_595248_-\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NZ_CP009906.1\|WP_002211863.1\|576169_577528_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP009906.1\|WP_002222491.1\|581719_583066_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP009906.1\|WP_002210201.1\|599818_601207_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NZ_CP009906.1\|WP_002213840.1\|593227_594166_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NZ_CP009906.1\|WP_002210198.1\|596219_597095_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009906.1\|WP_002216551.1\|575836_576046_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002210194.1\|591989_593105_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002211867.1\|579750_580755_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP009906.1\|WP_002211865.1\|578088_579108_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NZ_CP009906.1\|WP_002211868.1\|580772_581723_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP009906.1\|WP_002210192.1\|588825_590070_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740

Protein	Function_ID	Function_description	E-value
NZ_CP009906.1\|WP_002210191.1\|586758_587739_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP009906.1\|WP_002210201.1\|599818_601207_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP009906.1\|WP_002221142.1\|583474_586762_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP009906.1\|WP_002211864.1\|577574_578078_+\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	1.50048e-90
NZ_CP009906.1\|WP_002210199.1\|597203_598490_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.85244e-50
NZ_CP009906.1\|WP_002210200.1\|598761_599802_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NZ_CP009906.1\|WP_002211866.1\|579185_579740_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NZ_CP009906.1\|WP_002210197.1\|595394_596219_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NZ_CP009906.1\|WP_002211863.1\|576169_577528_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.50877e-50
NZ_CP009906.1\|WP_002222491.1\|581719_583066_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NZ_CP009906.1\|WP_002213840.1\|593227_594166_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	6.29599e-176
NZ_CP009906.1\|WP_002210198.1\|596219_597095_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.26211e-58
NZ_CP009906.1\|WP_002210196.1\|594192_595248_-\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	9.75278e-165
NZ_CP009906.1\|WP_002211867.1\|579750_580755_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP009906.1\|WP_002211865.1\|578088_579108_+\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	6.34333e-143
NZ_CP009906.1\|WP_002211868.1\|580772_581723_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	1.12008e-157
NZ_CP009906.1\|WP_002210192.1\|588825_590070_+\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.65074e-32

>NZ_CP009906.1|WP_002210191.1|586758_587739_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILTRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NZ_CP009906.1|WP_002221142.1|583474_586762_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALNETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETTLMSNLVKDGLDDYTNPLAALPPLAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLVLMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDANAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPRGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQASGQPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKNGSVLDAMAAVMRDSMLRLHQAHHQTHPSEKTVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKDPAIPVYCKPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAAGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLPKKDGERWHYHPLLGVFGALD
>NZ_CP009906.1|WP_002222491.1|581719_583066_-|type-I-F-CRISPR-associated-protein-Csy1
MSDEGLAAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRQELIARYEVRNWLTDAANRAGQIKLATHAPKYTHSDSKSSGILNIELQSKKKDYFSSVDLAEQASDVIGNAAVFDLVKLLQSECEGGSLIKCLEQGDNSVLKLFSNDDELVEEWTTKFKSILNNEKFTSHKLAKQFYFPVGPDQYHLLSPLFSSSLAQAMHQRIIEARFSDQSKEAKAAHKAGRWHPTVRVLYLDTAVQHIGGTKPQNISYLNSVRGGKVWLLPCGAPSWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQLYLLGVKPLSNTMDIRAARLACCDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPTRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETSS
>NZ_CP009906.1|WP_002211868.1|580772_581723_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHYQQVHAYLSGWDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEVATRRLLCRLLPGFALLDRSELLAEHLNRLRQTNPQAEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NZ_CP009906.1|WP_002211867.1|579750_580755_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPAKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NZ_CP009906.1|WP_002211866.1|579185_579740_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NZ_CP009906.1|WP_002211865.1|578088_579108_+|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEEHFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NZ_CP009906.1|WP_002211864.1|577574_578078_+|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHYPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NZ_CP009906.1|WP_002211863.1|576169_577528_+|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NZ_CP009906.1|WP_002216551.1|575836_576046_-|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK
>NZ_CP009906.1|WP_002210192.1|588825_590070_+|mechanosensitive-ion-channel
MQQRISQWLERLGMEFSDVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NZ_CP009906.1|WP_002210193.1|590676_591951_-|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NZ_CP009906.1|WP_002210194.1|591989_593105_-|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHVGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NZ_CP009906.1|WP_002213840.1|593227_594166_-|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFSEQQGQWAPVENAPTFQLQDPFFTRIEDELILGGVEINPHPDNPRQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTKNYTPIKIIAARDNFLPGATKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NZ_CP009906.1|WP_002210196.1|594192_595248_-|glycosidase
MMRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NZ_CP009906.1|WP_002210197.1|595394_596219_-|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NZ_CP009906.1|WP_002210198.1|596219_597095_-|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFIWLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFISSFLFAFGLQKLKHGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NZ_CP009906.1|WP_002210199.1|597203_598490_-|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIKEVNAILKP
>NZ_CP009906.1|WP_002210200.1|598761_599802_+|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NZ_CP009906.1|WP_002210201.1|599818_601207_+|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK

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Crispr_ID: NZ_CP009906_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009906_2

1202130-1202340

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAACT	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAACT	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP009906_2

>merge|NZ_CP009906|2|1202130-1202340|CRISPRCasFinder,CRT,PILER-CR
TCTATAAGCTGCCTGTGCGGCAGTGAACTCTGTACGCATACCGCCATCTTGCATCAGTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTTACGGCACGGCGAAAGATTCGGTTCTTGTCTTTCTAAGCTGCCTGTGCGGCAGTGAACTTAACGTAGCCAGGGCGTGTGGAACATGCCTAGTTTTCTAAGCTGCCTGTGCGGCAGTGAACA

>NZ_CP009906|2|2|1202130-1202339|CRISPRCasFinder
TCTATAAGCTGCCTGTGCGGCAGTGAAC	TCTGTACGCATACCGCCATCTTGCATCAGTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTACGGCACGGCGAAAGATTCGGTTCTTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAACGTAGCCAGGGCGTGTGGAACATGCCTAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009906|2|2|1202130-1202340|CRT
TCTATAAGCTGCCTGTGCGGCAGTGAACT	CTGTACGCATACCGCCATCTTGCATCAGTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAACT	TTACGGCACGGCGAAAGATTCGGTTCTTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAACT	TAACGTAGCCAGGGCGTGTGGAACATGCCTAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAACA

>NZ_CP009906|2|2|1202134-1202340|PILER-CR
TAAGCTGCCTGTGCGGCAGTGAACTCTGT	ACGCATACCGCCATCTTGCATCAGTCTTTTC
TAAGCTGCCTGTGCGGCAGTGAACTTTAC	GGCACGGCGAAAGATTCGGTTCTTGTCTTTC
TAAGCTGCCTGTGCGGCAGTGAACTTAAC	GTAGCCAGGGCGTGTGGAACATGCCTAGTTTTC
TAAGCTGCCTGTGCGGCAGTGAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009906.1\|WP_002210307.1\|1187084_1187387_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002227852.1\|1216998_1217250_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002210296.1\|1201271_1202126_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP009906.1\|WP_002210302.1\|1192509_1193538_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009906.1\|WP_002210297.1\|1199439_1200966_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP009906.1\|WP_002209746.1\|1215355_1215757_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP009906.1\|WP_002209745.1\|1213588_1213834_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NZ_CP009906.1\|WP_002227877.1\|1188414_1189335_-\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP009906.1\|WP_002209749.1\|1216402_1216975_-\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NZ_CP009906.1\|WP_002209748.1\|1215989_1216391_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP009906.1\|WP_002214718.1\|1202699_1203248_+\|DUF1440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226008
NZ_CP009906.1\|WP_002210300.1\|1195145_1196075_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380623
NZ_CP009906.1\|WP_002210303.1\|1191352_1192486_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP009906.1\|WP_002210306.1\|1187589_1188405_-\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|226241
NZ_CP009906.1\|WP_002210294.1\|1203654_1209633_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP009906.1\|WP_002223323.1\|1193549_1195097_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009906.1\|WP_002214717.1\|1209689_1210568_+\|transglycosylase	unknown	unknown	gnl\|CDD\|273954
NZ_CP009906.1\|WP_002216002.1\|1214506_1215088_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002209743.1\|1210601_1211810_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NZ_CP009906.1\|WP_002359655.1\|1197479_1199405_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|226471

Protein	Function_ID	Function_description	E-value
NZ_CP009906.1\|WP_002210296.1\|1201271_1202126_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.17523e-68
NZ_CP009906.1\|WP_002210302.1\|1192509_1193538_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.15893e-97
NZ_CP009906.1\|WP_002210297.1\|1199439_1200966_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP009906.1\|WP_002209746.1\|1215355_1215757_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	5.05571e-40
NZ_CP009906.1\|WP_002209745.1\|1213588_1213834_-\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	5.27401e-36
NZ_CP009906.1\|WP_002227877.1\|1188414_1189335_-\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	8.43662e-165
NZ_CP009906.1\|WP_002209749.1\|1216402_1216975_-\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	2.31704e-76
NZ_CP009906.1\|WP_002209748.1\|1215989_1216391_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	7.32611e-43
NZ_CP009906.1\|WP_002214718.1\|1202699_1203248_+\|DUF1440-domain-containing-protein	gnl\|CDD\|226008	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown].	2.91652e-69
NZ_CP009906.1\|WP_002210300.1\|1195145_1196075_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380623	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins. The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.	4.31227e-120
NZ_CP009906.1\|WP_002210303.1\|1191352_1192486_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.07432e-69
NZ_CP009906.1\|WP_002210306.1\|1187589_1188405_-\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|226241	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism].	3.14642e-169
NZ_CP009906.1\|WP_002210294.1\|1203654_1209633_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP009906.1\|WP_002223323.1\|1193549_1195097_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP009906.1\|WP_002214717.1\|1209689_1210568_+\|transglycosylase	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.09445e-118
NZ_CP009906.1\|WP_002209743.1\|1210601_1211810_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.39969e-152
NZ_CP009906.1\|WP_002359655.1\|1197479_1199405_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|226471	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism].	0

>NZ_CP009906.1|WP_002210296.1|1201271_1202126_+|MurR/RpiR-family-transcriptional-regulator
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAERADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMESEAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVVGLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSISFSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDAFRSQSATLCLVQSLVVALAYQQEAQAGAALAHRQ
>NZ_CP009906.1|WP_002210297.1|1199439_1200966_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
METVANFINGKCVFSCGNSVTSGSPRAQAIFNSATGEPIRQVMMSTAQETEQAITAAQQAFASWSRQAPLKRARVMFRFKSLLEQHLDALAQLISEEHGKVYSDAVGELTRGLEVVEFACGIPHLQKGEHSANVGTGVDNHSLMQPLGVCVGITPFNFPAMVPMWMFPIALATGNTFVLKPSEKDPSLAVRLAQLLTEAGLPDGVFNVVQGDKTAVDVLLTDPRVQAVSFVGSTPIAEYIYQTASAHGKRCQALGGAKNHCILMPDADMDMAASAIMGAAYGAAGERCMALSVVLAVGDETADNLCARLEQQISTLRVGPGLAQEPENDMGPLISAPHRAKVLGYIDSGVAQKATLRIDGRGLKVAGHEQGYFVGPTLFDHVTPAMTIYQEEIFGPVLSVVRIADYRSAVDLINRHEYGNGTAIFTRDGGTARRFCEEVQVGMVGVNVPIPVPVAFHSFGGWKRSIFGPLNVHGNDGVRFYTRMKTITARWPEAQHDQGAAFSMPTLG
>NZ_CP009906.1|WP_002359655.1|1197479_1199405_-|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MKTVRMTMAQALVRFLNQQYVAIDGQEVAFVHGVMTIFGHGNVLGIGQALEENPGHLQVHQGCNEQGMAHMAIGFAKQYRRQRIYAVSSSIGPGAANMVTAAATATANRIPLLLLPGDIYASRQPDPVLQQIEQYHDLSISTNDCFRPVSRYWDRINRPEQLMSAMLSAMRVLTDPADTGAVTLCLPQDVQGEAWDYPASFFERRVHRIERRPPDTRRLSDALSLIARKRRPLVVCGGGVRYSGAHEAFRAFVENAQLPFTETQAGKGALPSDHPLNLGGIGVTGGLAANRLAPQADLVIGIGTRLTDFTTGSKALFSHPEVAFLLLNVAEFDALKLDATALIADARVGLEALTEGLAGYRTAWQGDIIEAKAAWCDECQRLWSRTWRPDEVPEVAGHLDDSLQEYAEVLNTTLTQTRVLGLINQHIEDDAIVVGAAGSLPGDLQRLWQVKTADTYHLEYGYSCMGYEIAAAIGAKIAMPHQPVYAMVGDGSYMMLHSELHTAVQEGLKITVLLFDNAGFGCINNLQMGHGMGSFCTESRHRNHESGQLNGPLICVDFAQNAESYGCRAWRVHDEPSLLAALAASRDHPGPVLLDIKVLPKSMTHDYASWWRTGDAQIARSPAVQQAAERTQMKVKRARQY
>NZ_CP009906.1|WP_002210300.1|1195145_1196075_-|sugar-ABC-transporter-substrate-binding-protein
MKKLILAALIVFTSGVAFAENEQIVFSTPNLAMPFEVHMQRTAVKTAKALGVKLQVLDGQGSSPKQVADLENAITRGAQGFIVSPNDINAISSAVEEIQQAKLPVVTLDRSVESEKKVPHFGANNYKGGEAIANYVKSMFPNGAEIVLLTGQPGSSSNIERTKGIRDSLKTGGDKYRIVVDQTGNWMRSEGMRIIESVLPSLPKPPQVILSANDDMALGAIEALQSHGMKPGEIMVTGFDAVPEALARVREGWMAVTADQRPGYAVTTAMNQLVANIRDQKAITGADFLPTMITKENLDQAERVSEAGK
>NZ_CP009906.1|WP_002223323.1|1193549_1195097_-|sugar-ABC-transporter-ATP-binding-protein
MSQPLLKITDMAKSFSGVWALSNVQLTLEQGEIHALLGENGAGKSTLLKALSGAQPQTHGEIWFNGEMLALDDSPVERQNKGIITIYQEVNLLPNMTVAENMFLGREPRRRQVFVDEKAVNQEAQAILDYLQLNVSPTTAVARLSIAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVESLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRYTGSDEVAGTNVEKIIRLMVGRDVVFNRRPASETHHQDQPIRLSVQGLCREKPPLDPHGVALKDISFHVHAGEVLGIAGLVGAGRTEVARCLFGAGAFTSGNFEIDGVPYQPRDPMFALEQGIALVPEDRKKEGAVQGLSIRDNLTLSSLAGLLQWRFFVNTRKEDQLIETYRLALQIKMVNSEQAVRKLSGGNQQKVILARCMALNPRILIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVLAVSDRIITLSEGRVTGEIHGDDASEERLMTMMTINHNALNAA
>NZ_CP009906.1|WP_002210302.1|1192509_1193538_-|ABC-transporter-permease
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
>NZ_CP009906.1|WP_002210303.1|1191352_1192486_-|Gfo/Idh/MocA-family-oxidoreductase
MKEVRIGLIGTGYIGKAHAIAYAQAPTVFELRGKLVREMVAEVSPALAAQRAQAFGFNRFTCDWRELVADPAIDVVDICSPNYLHKEMALAAIHHGKHVYAEKPLALNARDASEMAAAATRAGVKTLVGFNYIKNPSAKLAKEIIERGEIGEVIHFYGTHNEDYMADPNTPIHWHCLHATAGLGALGDLAAHIVSMAQYLVGEITQVCGDLKTVVVTRPASVGSSARVAVENEDQAHAMVRFVNGAQGVIEASRVACGRKMGLSYMITGTQGAISFTQERMAELKLYLHNDPVNRQGFRTLLVGPAHPEYAAFCMAAGHGIGFNDQKTVEVRDLIDGIAMDTPLWPDFAEGWKVSRILDAIALSHQDSRWVNVTDIV
>NZ_CP009906.1|WP_002227877.1|1188414_1189335_-|myo-inosose-2-dehydratase
MRKTEADRHTTAVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFAGFELGNKFSREAGVLGPILEHHQLKLVSGWYSGRLLERSVEEEIVAVRSHLALLRELGAKVMVFAEVSGCIHGEQQTPVHLRPRFPPARWAEYGAKLTAFARYTQALGVQIAYHHHMGTVIESAQDIDNLMIHTGEEVGLLLDTGHLTFAGADPLAVAQRWIARINHVHCKDVRTSVLADVKNRKTSFLDAVLSGVFTVPGDGGVDYPPIMALLKQHGYQGWLVVEAEQDPNVAHPMTYARMGYHNLSRLAHNAGLI
>NZ_CP009906.1|WP_002210306.1|1187589_1188405_-|5-deoxy-glucuronate-isomerase
MSRLLSRRQAPDERGLTQRITPAQAGWGYVGFEVYELNEGQPLTLTAVPDERCLVLIAGRASISTPSAQFPNIGDRMSPFERHKPWAVYVTPGEAVQVQAITPLELAVCSAPGKGTYPTRLISPEDIGAEARGKGHNQRYVHNILPEDHPADSLLVVEVYTNEGASSSYPSHKHDTDNPPHETYLEETYYHRLNPEQGFCMQRVYTDDRSLDECMAVYNREVVMVPRGYHPVATMAGYDSYYLNVMAGPVRKWIFSWENDHVWINHNYPIT
>NZ_CP009906.1|WP_002210307.1|1187084_1187387_+|hypothetical-protein
MQSPSNNSRAHCSKPFLYRQNQWHFNQAISEYRLPAPLSAQDLTDSVNHINMSVIKDNAIRASGTAKIMMNHRLRRTAATIKPTHIAATTGQYIIEKTMI
>NZ_CP009906.1|WP_002214718.1|1202699_1203248_+|DUF1440-domain-containing-protein
MSEKRVNLQVIAWATIIGGFVSSLVKSGTEVNMPPRVVGEISPPAANIDAWLGWLGINSHSMDYVYQGVTISGTVVLYHWLFSFVFAFVYVLLSAYWPKVRLWYSAAYGLSITVAIHGVLIPALGFRHPAYLAGETGWLWNLNGYELWSEIIGHLCWSASLEICLVAVLAFFSKPIKGIWAN
>NZ_CP009906.1|WP_002210294.1|1203654_1209633_+|alpha-2-macroglobulin-family-protein
MDLLRFLLISPFALIKGLYRLSAYLLRLVGRLLRPVVGNLNWRAPQWMTKTANGLHCAFNRSEQWVAKHPKGISAAIVLLMAAASAAFYGYHWYLNRPQPIEPAPMVYQETSIRVSAPRTVNYQAQKPEAQPLSLNFMHSAAPITAMGQVVDQGISLTPAIEGEWKWATERTLVFTPKKAWPMGANYQITIDTEKLLAPQIKLNQTELNFTTPAFAYQLEKAEYYQDPQEAQKRSTIFHVQFNAPVDVASFEKQILLGLVEGKSKSEKKLNFSVVYDEKKLNAWIHSQPLMPMDKGGSVHLSINKGVNASVAATPTTQAQNKWVSVPNLYSLAVNSINATLVESDNNNGERALIIAISDAVKDKEIKNAVKAWLLPQHNFQAKESAKTSTDFYPWDMDDIDDNLLQQSTPLALTLNEAEQEYQPIFSFKFDAPSYRTLLIEVNNSLTSVGGYKMPEKIYQIVRVPDYPKTLRFMSQGSLLSMQGDKQISVAARNMTGMKLDIKRVIPSQLQHIVSFKSSEYSSAHFNRLSDEYFTEHFQYQTALNNDNPGEINYQGVDLSRYLANNPSARRGVFLLTLSAWDPEKRDNQQHSEEDYDEDQEWVGDSRFVVITDLGIITKQSQDRSRDVFVQSIHSGLPAADAKVSVVAKNGVVLLSQITDSKGHVHFPALDAFKNERQPVMFLVEKEGDVSFLPTRATYDRNLDFSRFDIDGEETPSDPRTLSSYLFSDRGVYRPGDRFNIGLITRTANWATALDGVPLRAEIRDPRDTLMSTLPITLDSSGFNELSYTTGENSPTGEWNVYLYLVGKNNETSMLLGHTTVNVKEFEPDRLKVQLQLTPERQQGWVKPQELQANINVQNLFGTPAQERRVTSRLILRPMYPSFAPFPDYLFYENRHNSDGFETELEEQTTDLQGMATIPLDLKSYADATYQLQLLSEAFEAGGGRSVAATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYISVLTKQDSGVYKYQSRLKEQLVSEQPLQISPTGTDFTLVTQQPGDFILVVKDSQGQVLNRISYTVAGNANLTRSLDRNTELKLKLNQAEYLQGEEIEIAINAPYAGSGLITIEKDKVYSWQWFHSDTTSSVQRIRIPPAMEGNGYINVQFVRDVNSDEIFMSPLSYGVMPFKISTKARQAAIELASPSVIKPGEVLPIKVTTDSPQRVVVFAVDEGILQVARYRLKDPLDYFFRKRELSVQSAQILDLILPEFSKLMALTSAPGGDAGEGLDLHLNPFKRKQDKPVAYWSGITEVNGETTFNYPIPDYFNGKIRVMAISATPDRIGKVQTSTTVRDNFILTPNVPAMVAPGDEFDVTVGVSNNLQGLKGKAVDITVRLTPPPQLEVVGEAQHSLSLAEKRETLVSFRLRARSALGDAPLVFDASYGSQSSRRTVSTSVRPAMPFRTQSVMGRMEGNKHTVTNLRQMFDNYAQRQATASHSPLVLTQGLARYLADYPYYSSEQIVSRSIPLIMQSKHPEMDSALNQNEVRDQLKNMLRILSSRQNSTGAIGLWHASPTPDPFVTPYVVQFLLEAKSAGYSLPNDILEGANNALRLLAARPYDDLYSLRLRAFAVYLLTLQGEITTNTLASVQSTLQQLYPDSWQTDLSAIYLASSYRLLKMDDEANKLLQPTWKQLGKAYSKAWWTQNYFDPLVQDATRLYLITRHFPEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQIIEISKSKGIDPNVISTLNGLFVQGDFTGEAKAIQFNNYASAPAWYVVNQSGYDLQPPKDAISNGLEISRSYTDEQGKPVTQVTLGQKVNVHLKIRANAKQGQNNLAIVDLLPGGFEVVQQTAPEPEFYDNQDDQDEETGSGWQSPLMVSGSSWYPDYSDIREDRVIIYGSASTDVKEFIYQIKSTNTGRFVVPPAYGEAMYDRNVQALSVGKGHILVVPPEAK
>NZ_CP009906.1|WP_002214717.1|1209689_1210568_+|transglycosylase
MRIPTLMATKRLLQNILMALFLLALLVIGFRLWPHPPLSQGLPLSTAYYDRHGTLLRLSLANDDRYRLWTPLEEISPLVIQGIQLHEDRGFYYHPGVNPISLLRGFWQSYVQGGRQQGGSTLTMQLARMHWHLNTRSPTGKLRQIARAIQLELSYSKHDILEAYLNYAPYGRNIESIAAASLIYFDKKPQQLTLPEALTLAVLPQSPSYRIDPTTGVLGSALTQARNRLFVRWQQTYPTDSSQMALFQLPLSLRQPEKMPYIAPHFIEQIRRQNQQLANTRDCKQYCVIACF
>NZ_CP009906.1|WP_002209743.1|1210601_1211810_+|IS256-family-transposase
MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL
>NZ_CP009906.1|WP_002209745.1|1213588_1213834_-|transcriptional-regulator
MDKQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEIWPSRYLKPKKSPAESVNPG
>NZ_CP009906.1|WP_002216002.1|1214506_1215088_+|hypothetical-protein
MKYNSVLKTFVDDDYRLEDHLDFKKQHADIRYQKLHKQLNEMSDENMHALLTIEEGEYFLKTLCNPNPHQSWKDAIFSCTDPTSVFFGSLVESLSVSRIVFEIRGFGVTATEYVGKNGSSYIKLSGYAGIRKYLDATRYLIDNPKILDIGIGTQGIENGIVRGARFCIVFSAAYRSVELLLKDEYGLADFLLI
>NZ_CP009906.1|WP_002209746.1|1215355_1215757_+|DUF1240-domain-containing-protein
MVKINRPLVGAFAILLFFLSSWGCWFSLSGYLAFFKLSDVIIFSWKVGFVIFAVPLLFYFSYLAFFSAIKNKPAIMNNKLANALAILAILGSIISLFSSAYISYSLTEYSYKSCPRSSWMSPNKYVKDIKLCP
>NZ_CP009906.1|WP_002209748.1|1215989_1216391_+|DUF1240-domain-containing-protein
MVKINRPLFGAFAVFLLFLSCWVSWFSLNGYWDFFKLSDVIIFSWKVGVMIFGAPVLFYFSYLAFYCAIKNKPAKVNNKLANTFAMLAMLGVVISFFSSVYIGYSLTEYGYKLCSRSSWMSPNEYVKDIKLCP
>NZ_CP009906.1|WP_002209749.1|1216402_1216975_-|Hcp-family-type-VI-secretion-system-effector
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENERINVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVYSFLISSTLFQVCLNIFIFFNWLVYQNYFWEK
>NZ_CP009906.1|WP_002227852.1|1216998_1217250_-|hypothetical-protein
MMKNNKNINKDEFSDKLSQQIKEMINNSQLDSVEILSVVMESIFSLFSETEGHLAEMKFIDSAGEDYRFILRLEVPPILERQH

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Crispr_ID: NZ_CP009906_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009906_3

1877218-1877297

Orphan

Consensus_repeat	Method
CAGCCGCAGCCACGCTCAGCCATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009906_3

>merge|NZ_CP009906|3|1877218-1877297|CRISPRCasFinder
CAGCCGCAGCCACGCTCAGCCATTCGACACCCATATCAGAATGACTGCGGCAACGCAGCCGCAGCCACGCTCAGCCATTC

>NZ_CP009906|3|3|1877218-1877297|CRISPRCasFinder
CAGCCGCAGCCACGCTCAGCCATTC	GACACCCATATCAGAATGACTGCGGCAACG
CAGCCGCAGCCACGCTCAGCCATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009906.1\|WP_002217581.1\|1876404_1877055_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NZ_CP009906.1\|WP_002212201.1\|1877300_1878314_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP009906.1\|WP_002212198.1\|1874845_1875664_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP009906.1\|WP_002210361.1\|1884437_1884908_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002210359.1\|1880976_1882815_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP009906.1\|WP_002210358.1\|1879070_1880819_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP009906.1\|WP_002210362.1\|1884916_1886299_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP009906.1\|WP_001144069.1\|1878719_1878935_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP009906.1\|WP_002212194.1\|1867951_1870807_-\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
NZ_CP009906.1\|WP_002212192.1\|1865099_1866350_-\|L-methionine/branched-chain-amino-acid-transporter	unknown	unknown	gnl\|CDD\|236823
NZ_CP009906.1\|WP_002212193.1\|1866386_1867817_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	unknown	unknown	gnl\|CDD\|183085
NZ_CP009906.1\|WP_002212195.1\|1870977_1872285_-\|inorganic-triphosphatase	unknown	unknown	gnl\|CDD\|225569
NZ_CP009906.1\|WP_002212196.1\|1872588_1873212_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|182809
NZ_CP009906.1\|WP_002214241.1\|1886431_1886662_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002210360.1\|1883955_1884411_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002212199.1\|1875937_1876297_-\|bifunctional-dihydroneopterin-aldolase/7,8-dihydroneopterin-epimerase	unknown	unknown	gnl\|CDD\|183219
NZ_CP009906.1\|WP_002212191.1\|1864493_1864775_+\|accessory-factor-UbiK-family-protein	unknown	unknown	gnl\|CDD\|225508
NZ_CP009906.1\|WP_001618661.1\|1887701_1888724_-\|IS21-like-element-IS100-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP009906.1\|WP_002212197.1\|1873371_1874610_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP009906.1\|WP_002210366.1\|1890294_1891227_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161

Protein	Function_ID	Function_description	E-value
NZ_CP009906.1\|WP_002217581.1\|1876404_1877055_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	6.06402e-111
NZ_CP009906.1\|WP_002212201.1\|1877300_1878314_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP009906.1\|WP_002212198.1\|1874845_1875664_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	5.08833e-116
NZ_CP009906.1\|WP_002210359.1\|1880976_1882815_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP009906.1\|WP_002210358.1\|1879070_1880819_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP009906.1\|WP_002210362.1\|1884916_1886299_-\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	2.83623e-06
NZ_CP009906.1\|WP_001144069.1\|1878719_1878935_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	8.25342e-17
NZ_CP009906.1\|WP_002212194.1\|1867951_1870807_-\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	0
NZ_CP009906.1\|WP_002212192.1\|1865099_1866350_-\|L-methionine/branched-chain-amino-acid-transporter	gnl\|CDD\|236823	PRK11021, PRK11021, putative transporter; Provisional.	0
NZ_CP009906.1\|WP_002212193.1\|1866386_1867817_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	gnl\|CDD\|183085	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE.	0
NZ_CP009906.1\|WP_002212195.1\|1870977_1872285_-\|inorganic-triphosphatase	gnl\|CDD\|225569	COG3025, COG3025, Uncharacterized conserved protein [Function unknown].	0
NZ_CP009906.1\|WP_002212196.1\|1872588_1873212_+\|SH3-domain-containing-protein	gnl\|CDD\|182809	PRK10884, PRK10884, SH3 domain-containing protein; Provisional.	4.34503e-147
NZ_CP009906.1\|WP_002212199.1\|1875937_1876297_-\|bifunctional-dihydroneopterin-aldolase/7,8-dihydroneopterin-epimerase	gnl\|CDD\|183219	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase.	2.02028e-82
NZ_CP009906.1\|WP_002212191.1\|1864493_1864775_+\|accessory-factor-UbiK-family-protein	gnl\|CDD\|225508	COG2960, COG2960, Uncharacterized protein conserved in bacteria [Function unknown].	1.21559e-35
NZ_CP009906.1\|WP_001618661.1\|1887701_1888724_-\|IS21-like-element-IS100-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.45872e-79
NZ_CP009906.1\|WP_002212197.1\|1873371_1874610_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP009906.1\|WP_002210366.1\|1890294_1891227_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.91117e-86

>NZ_CP009906.1|WP_002217581.1|1876404_1877055_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MSAIALGMIIFAYLCGSISSAILVCRVARLPDPRTHGSGNPGATNVLRIGGRTAAVAVLLFDILKGMLPVWIAYLLHIPPLYLGLTAIAACLGHIYPVFFHFKGGKGVATAFGAIAPIGWDLTGLMTGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKPQFTFPVAMLSCLILMRHHDNIQRLWRGKEGKIWDKLRKKKQKTPAEEAAELEEKED
>NZ_CP009906.1|WP_002212199.1|1875937_1876297_-|bifunctional-dihydroneopterin-aldolase/7,8-dihydroneopterin-epimerase
MDIVFIEELSVITTIGVYDWEQTIQQKLVFDIEMGWDNRKAAGSDDVNDCLSYADISEAVIQHVGSQRFALVERVAEEVAELLLRRFNSPWVRIKVSKPGAVAQAKNVGVIIERGQRLS
>NZ_CP009906.1|WP_002212198.1|1874845_1875664_-|undecaprenyl-diphosphate-phosphatase
MTDMYSLFVAFILGVVEGLTEFLPVSSTGHMIIVGELLGFTGDKAKTFEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNGHLTLGHILLAMIPAVILGLAFHDVIKALFDPKSVMYALVAGGVLLLAAEWLKPKNPKAVGLDDITYRQAFAIGCFQCLALWPGFSRSGATISGGMLVGVNRYAASEFSFILAVPMMIGASGLDLYKSLHFLTLGDLPMFAVGFITAFIVALIAIKTFLSLIKRISFVPFAIYRFIVAAVVYWVFM
>NZ_CP009906.1|WP_002212197.1|1873371_1874610_+|multifunctional-CCA-addition/repair-protein
MNIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVFLHPVSHEEYALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLENRVLRHVSDAFGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPERVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGIHTLMTLAIAAQLSPEVDIRFAALCHDLGKGLTPKEHWPHHHGHGPAGVKLVEQLCQRLRIPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFNAIDVWRKPERLEQMIMTSEADARGRTGFENNPYPQGDYLRAAFQIANGVSIQEVVASGLQGLAIRDELQRRRQQALAEWKQTQETASI
>NZ_CP009906.1|WP_002212196.1|1872588_1873212_+|SH3-domain-containing-protein
MQKLRLICLTILSVSLSWGAQAEEKRYISDELDTYVHSGPGNQYRIVGTLKGGDEVTLISVDNGTNYGQIRDSKGKTTWIPLNQLSETPSLRVRVPDLEQQVKTLTDKLANIDNSWNQRTAEMQQKVAASDSVISELQKENESLKNQLIVAQKKVNAVNLQLDDKQRTIILQWFMYGGGVAGIGLLLGLVLPHLIPSRKKNNRWMNC
>NZ_CP009906.1|WP_002212195.1|1870977_1872285_-|inorganic-triphosphatase
MTVEIELKFIATPAAIAALPEWIESQKNQHFPPQTLANIYFDTADKRLRQNDIGLRIRGYDGRYEMTVKTGGKVVGGLHQRPEYNVDIDSDQLDLARFPQDIWPEGWAVDLLQAELQPLFRTDFTREKWVITYGESEIELALDQGSISADTLSEPLSEIELELKQGTQGDLLALAAELAKMGGLRQSNLSKAARGYHLAQGNPPRELRPFLVFQPVAKSTVEQGMAGGLESILEHWQYHEELWLRGEPAAKTMIIDALAMVRQSLAIFGGLVPRKASTELRALLIALEPQLEPKSVDAALLCYSVDYLKCKLALTSWLITAGWRPFMDAKAQAKFDGSFKRFCDIMLSRSAADLKEAFGHNLDDDGYLAQLPRLNRQLIAFQLLSGFYPQSEWHPYIDAWFGLQQAIMARQGHWRDTARKEALSQAAFWLNGAVR
>NZ_CP009906.1|WP_002212194.1|1867951_1870807_-|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase
MLPLPSELQIQAQSIKQRFSELPAPPDLRDEDIAVLALSDFVSDMLLIHPQWLEELHQQPPQPQEWQYYSQWLSQALAGVQDEAALLTALRLFRRRVMVRIAWSQVLQTSGTAETLQQLSTLAESMIIAARDWLYQVCCRELGTPCNRQGVPQPLLILGMGKLGGGELNFSSDIDLIFAYPENGQTQGGRRELDNAQFFTRLGQRLIKALDQHTIDGFVYRVDMRLRPFGDSGPLVLSFAALEDYYQEQGRDWERYAMVKARLMGGADDPYSQELRQMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLKDNIKLGAGGIREIEFITQVFQLIRGGREPRLQERALLPTLQAVAELGLLPEQQVADLSGSYLFLRRLENLLQAIADEQTQTLPNDPLNQARLAWGMGYADWAAMSTALENHMQAVRVVFDDLIGDETPDIGEDPSHGLYKSLWQDVLEESDLAPLTPHLEEAARRQLLATISGFRHDVDKRTIGPRGREVLDQLMPRLFAEVCPRPDANVALSRLILLLLSIVTRTTYLELLVEYHAALKHVIRLCSASPMVASQLARYPLLLDELLDPQSLYQPLAPSAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQQLRIAAGDITEALPVMKVSDHLTYLAEAIIDAVIQQAWNQMVARYGQPSHLQQSEGRGFAVIGYGKLGGWELGYSSDLDLVFLLDCPLDVMTDGDRSIDGRQFYLRLAQRIMHLFSTRTSSGILYEVDARLRPSGEAGMLVSTIEAFADYQRNEAWTWEHQALVRARIVYGSPKLHQQFDAIRQQILCRHREDPQLQQEVREMREKMRNHLGSKQRDIFDIKADAGGITDIEFIAQYLVLRYAASEPRLTRWSDNVRIFESMAHYDIMSPEEAAALTRAYVTMRDEIHHLALQEQSSKVAADSFIAEREQVAASWHKWLAANDANVS
>NZ_CP009906.1|WP_002212193.1|1866386_1867817_-|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE
MKVTLPDFRRAGVLVVGDVMLDRYWYGPTCRISPEAPVPVVKVDTIEERPGGAANVAMNIASLGAVARLVGLTGIDDAARALICKLSEVRVRCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFDGVDPTPIFERIQLALPQIGALVLSDYAKGALNSVQPMIQLARKANVPVLIDPKGSDFERYRGATLLTPNLSEFEAVVGRCKNEEELVNRGMQLVADFELSALLVTRSEQGMTLLQLGKPPLHLPTQAKEVFDVTGAGDTVIGVLAAALAAGNSLEESCFLANAAAGVVVGKLGTSTVSPIELENAIRGRAETGFGVMDEQQLKIAVAQARQRGEKVVMTNGIFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGEKRPVNPLEQRMVVLGALEAVDWVVPFEEDTPQRLIADILPDLLVKGGDYKPHEIAGSEEVWAAGGEVKVLNFEDGVSTTNIIQSIKNGRG
>NZ_CP009906.1|WP_002212192.1|1865099_1866350_-|L-methionine/branched-chain-amino-acid-transporter
MGGLKQELSLAQGVGLLSTSLLGTGVFAVPALAAMLAGHDSLWAWPVLIVLVFPIAIAFAALGRHFPSAGGAAHFVAIAFGPKLGKVTGWLFLSVIPVGLPAALQIAAGFWQAMFGWSDTGLLMVQLVTLLVIWLLGTRSAGSSANLQTVIALLVIALVAAIWWQGDIRLSQIPWPALQDVSPPNIFNALAVMFWCFVGLEAFAHLATEFRHPERDFPRALIVGLLVAGAVYWGCTVAVLHFQAYGESQAAAASLPGIVVQLFGEHALWIACIIGYLACFASVNIYTQSFARMVWSQSQVRPQSKLARLSAGQTPVNALTAVVGSCLVFALLIYWLALPLDLLIVYANGIFVLIYLLCMLAGIRLLSGRARVMSVIGSLLCCVLLVMIGWKSVYALLMFALLWMLMSKPKTQLTQP
>NZ_CP009906.1|WP_002212191.1|1864493_1864775_+|accessory-factor-UbiK-family-protein
MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRLILQSQLTRLDLVNREEFDVQTQVLLRTREKLALLEQRVGALEAKFNSAPADHGEKTGE
>NZ_CP009906.1|WP_002212201.1|1877300_1878314_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MRVLGIETSCDETGIAVYDDKAGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKEANLSAKDIDAVAYTAGPGLVGALLVGATIGRALAFAWGVPAVPVHHMEGHLLAPMLEENAPEFPFVALLVSGGHTQLISVTGIGEYLLLGESVDDAAGEAFDKTAKLLGLDYPGGPMLSRMAQQGTVGRFTFPRPMTDRPGLDFSFSGLKTFAANTIRANGDDDQTRADIARAFEDAVVDTLAIKSKRALDQTGFKRLVIAGGVSANQTLRLKLADMMQKRGGEVFYARPEFCTDNGAMIAYAGMVRLRSNLNSELSVSVRPRWPLSELPKV
>NZ_CP009906.1|WP_001144069.1|1878719_1878935_+|30S-ribosomal-protein-S21
MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY
>NZ_CP009906.1|WP_002210358.1|1879070_1880819_+|DNA-primase
MAGRIPRVFINDLLARTDIIDLIDARVKLKKQGKNYHACCPFHHEKTPSFTVNGEKQFYHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLVTNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRILGDGVPKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTMRILIGLLVQNPQLATLIPSLQGLEQAKLAGLPLFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDRTHGLNAEERKELWSLNLALARKK
>NZ_CP009906.1|WP_002210359.1|1880976_1882815_+|RNA-polymerase-sigma-factor-RpoD
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTATHVGSELSTEEMDDEDEDEDEDDDAEDDNSIDPELARQKFSDLREQYENARMEIKKNGRNHANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKNFVTLFSSNETSDTWFNAAVAMGKPWSEKLKDVSEDVQRSLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
>NZ_CP009906.1|WP_002210360.1|1883955_1884411_-|hypothetical-protein
MANLEKAVNEFTRISKSMGYNINPPYTGKLETYDFGRDISPEQPDFWKQYGSFLRISNGSFADGCVFYGMSGGEDDAGLIEFNNALNIPDFKDETMTGLIVIGGNNTDTFYYDPRTGKWEACDRIGTDRVWESCDSLAELIETQIKMLENG
>NZ_CP009906.1|WP_002210361.1|1884437_1884908_-|hypothetical-protein
MTDIEKAVTTFQAYRAAIGYPKIPPYEGEVIEYDFGRKIESNQPDFWTQYHEFLRLSDGLAADGVYFYGIACEGKLIGNRLIDNNDALRDGEMYDESMDGLIAIGSSNSDIFVYDTNTHKWESRDRIAIDDINESYDTLAELIDSQLQRINIGDAF
>NZ_CP009906.1|WP_002210362.1|1884916_1886299_-|HNH-endonuclease
MSFNLPGMYLYYLSRDNLAPEEYERIISPHAAWARICREYEFDDSHNTSRYLINMREREQRSSPDQPRPGGIREKEKLEKLVFSGDVVMLSDMYGPARLFYINGEGQLMSTDPHAFRFEGAAKIIKAFDDSVKCRNYQRTGGKPRSTQTRRLKSTTNTIPDRSMVTRASDESGRVLSAKWQSVTDSAKTLWEATPFTHDKATTEAARGRIADGAVGTLEGLGTLMGPSAQEYMAGAFNPEQAAINKVRQQNQQAAGKAIYDNTKGAVTDAYQRNGLAGAAAMVVTASVAELAGTKGLGTVEKVGTLGDVAKLGKAVELEKLEGYLGTYKGQKVLLQNVDVVKMDYVRRSTADRNLLRKEFDNGVRKKFLKDIANNPEVVKRLDAFDRSVLAKGVVPDGYQVHHKLPLDDSGNNNFDNLVLISTRPEHAAFTTTQKHITKNLTPTGTNIVLWPKPQGIIYP
>NZ_CP009906.1|WP_002214241.1|1886431_1886662_-|hypothetical-protein
MDTLTTATPSVHRKYFRHILGACGSCYFERQAGKFILGEEGDQFFSAYVREDSAYRIERMESESPLGYQTSGAIPV
>NZ_CP009906.1|WP_001618661.1|1887701_1888724_-|IS21-like-element-IS100-family-transposase
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKPPLHHPLSIYDSFCRGVA
>NZ_CP009906.1|WP_002210366.1|1890294_1891227_-|LysR-family-transcriptional-regulator
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPGAPFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMRITPWELAERI

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Crispr_ID: NZ_CP009906_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009906_4

3203879-3203991

Orphan

Consensus_repeat	Method
CTTCACTCGGCTGCTCAAATGTGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009906_4

>merge|NZ_CP009906|4|3203879-3203991|CRISPRCasFinder
CTTCACTCGGCTGCTCAAATGTGCTTTGGACGTCAACAACCCATTCAAAATCAAAAACGTATTAAAAGCCTAAGGATGATGGTCTGGCTTCACTCGCTGCTCAAATGTGCTTT

>NZ_CP009906|4|4|3203879-3203991|CRISPRCasFinder
CTTCACTCGGCTGCTCAAATGTGCTTT	GGACGTCAACAACCCATTCAAAATCAAAAACGTATTAAAAGCCTAAGGATGATGGTCTG
GCTTCACTCGCTGCTCAAATGTGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009906.1\|WP_002210158.1\|3196966_3197707_+\|peptidoglycan-binding-protein-LysM	unknown	unknown	gnl\|CDD\|225603
NZ_CP009906.1\|WP_002210156.1\|3199077_3199530_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP009906.1\|WP_001297096.1\|3202666_3203446_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP009906.1\|WP_002430134.1\|3199801_3200119_-\|primosomal-replication-protein-N	unknown	unknown	gnl\|CDD\|235071
NZ_CP009906.1\|WP_002209485.1\|3212919_3215412_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP009906.1\|WP_002210152.1\|3200886_3201588_-\|esterase	unknown	unknown	gnl\|CDD\|182555
NZ_CP009906.1\|WP_002209482.1\|3218300_3219629_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP009906.1\|WP_002209483.1\|3216416_3218225_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP009906.1\|WP_002209487.1\|3210947_3212321_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NZ_CP009906.1\|WP_002209481.1\|3219693_3220497_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP009906.1\|WP_042669231.1\|3201644_3202667_+\|IS21-like-element-IS100-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP009906.1\|WP_002209489.1\|3208834_3209839_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP009906.1\|WP_002210153.1\|3200127_3200520_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP009906.1\|WP_042669230.1\|3198423_3198882_-\|IS200/IS605-like-element-IS1541B-family-transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP009906.1\|WP_002210155.1\|3199569_3199797_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP009906.1\|WP_002223919.1\|3207420_3208584_-\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NZ_CP009906.1\|WP_002209484.1\|3215633_3216251_+\|hemophore-HasA	unknown	unknown	gnl\|CDD\|368907
NZ_CP009906.1\|WP_002209491.1\|3204410_3207047_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP009906.1\|WP_002209488.1\|3210007_3210781_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NZ_CP009906.1\|WP_002210157.1\|3197846_3198302_+\|DUF3757-domain-containing-protein	unknown	unknown	gnl\|CDD\|378884

Protein	Function_ID	Function_description	E-value
NZ_CP009906.1\|WP_002210158.1\|3196966_3197707_+\|peptidoglycan-binding-protein-LysM	gnl\|CDD\|225603	COG3061, OapA, Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane].	1.13463e-102
NZ_CP009906.1\|WP_002210156.1\|3199077_3199530_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	2.38148e-68
NZ_CP009906.1\|WP_001297096.1\|3202666_3203446_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.26232e-178
NZ_CP009906.1\|WP_002430134.1\|3199801_3200119_-\|primosomal-replication-protein-N	gnl\|CDD\|235071	PRK02801, PRK02801, primosomal replication protein N; Provisional.	3.07746e-69
NZ_CP009906.1\|WP_002209485.1\|3212919_3215412_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	8.20794e-132
NZ_CP009906.1\|WP_002210152.1\|3200886_3201588_-\|esterase	gnl\|CDD\|182555	PRK10566, PRK10566, esterase; Provisional.	1.45098e-159
NZ_CP009906.1\|WP_002209482.1\|3218300_3219629_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.16318e-105
NZ_CP009906.1\|WP_002209483.1\|3216416_3218225_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP009906.1\|WP_002209487.1\|3210947_3212321_+\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NZ_CP009906.1\|WP_002209481.1\|3219693_3220497_+\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.51188e-39
NZ_CP009906.1\|WP_042669231.1\|3201644_3202667_+\|IS21-like-element-IS100-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.53802e-78
NZ_CP009906.1\|WP_002209489.1\|3208834_3209839_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP009906.1\|WP_002210153.1\|3200127_3200520_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	1.10042e-54
NZ_CP009906.1\|WP_042669230.1\|3198423_3198882_-\|IS200/IS605-like-element-IS1541B-family-transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.5652e-45
NZ_CP009906.1\|WP_002210155.1\|3199569_3199797_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	3.62531e-36
NZ_CP009906.1\|WP_002223919.1\|3207420_3208584_-\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NZ_CP009906.1\|WP_002209484.1\|3215633_3216251_+\|hemophore-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	9.51098e-102
NZ_CP009906.1\|WP_002209491.1\|3204410_3207047_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP009906.1\|WP_002209488.1\|3210007_3210781_+\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.92616e-136
NZ_CP009906.1\|WP_002210157.1\|3197846_3198302_+\|DUF3757-domain-containing-protein	gnl\|CDD\|378884	pfam12582, DUF3757, Protein of unknown function (DUF3757). This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 154 amino acids in length.	2.3367e-40

>NZ_CP009906.1|WP_001297096.1|3202666_3203446_+|AAA-family-ATPase
MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
>NZ_CP009906.1|WP_042669231.1|3201644_3202667_+|IS21-like-element-IS100-family-transposase
MVTFETVMEIKILHKQGMSSRAIARALGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRLHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMPRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
>NZ_CP009906.1|WP_002210152.1|3200886_3201588_-|esterase
MWITIAPFVTLPTIFFYHGYTSSKEVYSYFAYAFAQAGFRTISPDADMHGARFNGNETQRLSHFWEILKSNIDELPDLKRHYQQAGLIEGERIGVAGASMGGMTALGAFARYPWIRVAADFMGSGYFTSLAHSLFPPRDAGREISQQAFERRLAPLADYELTHQLEKITERPLLVWHGEADDVVPAAESARLVQALRTRGGDNNLTYLTEAGIGHKITPTALRAGSDFFTQYL
>NZ_CP009906.1|WP_002210153.1|3200127_3200520_-|30S-ribosomal-protein-S6
MRHYEIVFMVHPDQSEQVPGMIERYSATITNAAGTIHRLEDWGRRQLAYPINKLHKAHYVLLNVEAPQEAIDELETNFRFNDAVIRSMVMRVKHAVTEASPMVKAKDERRERHDFASEANDDSEAGDSEE
>NZ_CP009906.1|WP_002430134.1|3199801_3200119_-|primosomal-replication-protein-N
MTTNRLVLSGTVCKTPVRKVSPSGIPHCQFVLEHRSTQQEAGFSRQTWCRMPIVVSGQQSQALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIEFIDSGD
>NZ_CP009906.1|WP_002210155.1|3199569_3199797_-|30S-ribosomal-protein-S18
MARYFRRRKFCRFTAEGVVEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARCIKRARYLSLLPYTDRHQ
>NZ_CP009906.1|WP_002210156.1|3199077_3199530_-|50S-ribosomal-protein-L9
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNVEFFEARRAELEAKLADVLAAAEARATKINELVSVTISSKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTAGEHEVHFQVHSDVFAKLNVVVVPEA
>NZ_CP009906.1|WP_042669230.1|3198423_3198882_-|IS200/IS605-like-element-IS1541B-family-transposase
MRDEKSLAHTRWHCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAECCVDHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK
>NZ_CP009906.1|WP_002210157.1|3197846_3198302_+|DUF3757-domain-containing-protein
MMKYQLSFVLLLTPLAVFAEQHCPAIDAIKLIGGVYTAKATSGEEWVGILQGPLPQESGIKRFSEALFVVEGENNGNNVTGSGKFQKCTYDLQAENIQLDMYYGGTTWIASIRGKPYWEYEKGGFFEIYTCSNVAPEYCKFDILVPGSASR
>NZ_CP009906.1|WP_002210158.1|3196966_3197707_+|peptidoglycan-binding-protein-LysM
MGRIAPRRRKNNRVYQPLLHSWLTIRQKVLPDAKNTDEQNLISEINAPEQRVDPDNVTEPALAPTQRKGVQSIKELWLKIWHLPDSFQWMEPLPFFHRRGVIIATTVLLLALLWPASRDNTDLSFPVSAPSTSVPLQAQLQDNNDVPVPPKVSPSETTQGNWQSYQVQTGKTLAQLFRDNNLPVNDVFAMAQVEGSDKPLSNLKAGQEVKIMLDAQGAVTALAIETPENTEVLFSRQNDGSYRREH
>NZ_CP009906.1|WP_002209491.1|3204410_3207047_-|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NZ_CP009906.1|WP_002223919.1|3207420_3208584_-|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NZ_CP009906.1|WP_002209489.1|3208834_3209839_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSDLHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVTHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NZ_CP009906.1|WP_002209488.1|3210007_3210781_+|acetylglutamate-kinase
MNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NZ_CP009906.1|WP_002209487.1|3210947_3212321_+|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NZ_CP009906.1|WP_002209485.1|3212919_3215412_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQGYSGQLAANTAETPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRCEQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NZ_CP009906.1|WP_002209484.1|3215633_3216251_+|hemophore-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVVDCHDMLLAA
>NZ_CP009906.1|WP_002209483.1|3216416_3218225_+|type-I-secretion-system-permease/ATPase
MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPTFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPEAKILNSRSGWSNGVSYGIGPARTTSSPKP
>NZ_CP009906.1|WP_002209482.1|3218300_3219629_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESVCYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGHIAKNKLLEMESQSTSLQARVEQSTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NZ_CP009906.1|WP_002209481.1|3219693_3220497_+|energy-transducer-TonB
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK

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Crispr_ID: NZ_CP009906_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009906_5

3953770-3953891

Orphan

Consensus_repeat	Method
CTTAATGCCAATATTAATCGACATAATCAATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009906_5

>merge|NZ_CP009906|5|3953770-3953891|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTGTAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCTCTTAATGCCAATATTAATCGATATAATCAATTG

>NZ_CP009906|5|5|3953770-3953891|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTG	TAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCT
CTTAATGCCAATATTAATCGATATAATCAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009906.1\|WP_002213034.1\|3954729_3955254_+\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP009906.1\|WP_002221095.1\|3939953_3942008_+\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|182930
NZ_CP009906.1\|WP_002213025.1\|3959233_3959986_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235936
NZ_CP009906.1\|WP_002213036.1\|3954247_3954466_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009906.1\|WP_002213056.1\|3943707_3944124_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP009906.1\|WP_002213026.1\|3958512_3959232_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP009906.1\|WP_002213032.1\|3955243_3956527_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NZ_CP009906.1\|WP_002213046.1\|3946224_3946554_-\|sulfurtransferase-TusE	unknown	unknown	gnl\|CDD\|225472
NZ_CP009906.1\|WP_002213038.1\|3952770_3953517_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP009906.1\|WP_002213054.1\|3944232_3944550_-\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|184526
NZ_CP009906.1\|WP_002213058.1\|3942711_3943392_-\|DUF2057-family-protein	unknown	unknown	gnl\|CDD\|179619
NZ_CP009906.1\|WP_002213017.1\|3961341_3961590_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851
NZ_CP009906.1\|WP_002213049.1\|3945894_3946173_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|184675
NZ_CP009906.1\|WP_002213052.1\|3944610_3945801_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|185082
NZ_CP009906.1\|WP_002213028.1\|3957281_3958520_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NZ_CP009906.1\|WP_002213039.1\|3950199_3952617_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366708
NZ_CP009906.1\|WP_002213030.1\|3956528_3957266_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NZ_CP009906.1\|WP_002213024.1\|3959988_3960777_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP009906.1\|WP_002228570.1\|3960863_3961304_+\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NZ_CP009906.1\|WP_002213060.1\|3942068_3942533_-\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969

Protein	Function_ID	Function_description	E-value
NZ_CP009906.1\|WP_002213034.1\|3954729_3955254_+\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	1.09929e-42
NZ_CP009906.1\|WP_002221095.1\|3939953_3942008_+\|DNA-helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	0
NZ_CP009906.1\|WP_002213025.1\|3959233_3959986_+\|enoyl-CoA-hydratase	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	2.57932e-133
NZ_CP009906.1\|WP_002213024.1\|3959988_3960777_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.49415e-40
NZ_CP009906.1\|WP_002213056.1\|3943707_3944124_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.53332e-71
NZ_CP009906.1\|WP_002213026.1\|3958512_3959232_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35
NZ_CP009906.1\|WP_002213032.1\|3955243_3956527_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.93328e-136
NZ_CP009906.1\|WP_002213046.1\|3946224_3946554_-\|sulfurtransferase-TusE	gnl\|CDD\|225472	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism].	2.4785e-71
NZ_CP009906.1\|WP_002213038.1\|3952770_3953517_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NZ_CP009906.1\|WP_002213054.1\|3944232_3944550_-\|heat-shock-protein-HspQ	gnl\|CDD\|184526	PRK14129, PRK14129, heat shock protein HspQ; Provisional.	3.64231e-72
NZ_CP009906.1\|WP_002213058.1\|3942711_3943392_-\|DUF2057-family-protein	gnl\|CDD\|179619	PRK03641, PRK03641, DUF2057 family protein.	4.09411e-122
NZ_CP009906.1\|WP_002213017.1\|3961341_3961590_+\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09
NZ_CP009906.1\|WP_002213049.1\|3945894_3946173_+\|acylphosphatase	gnl\|CDD\|184675	PRK14426, PRK14426, acylphosphatase; Provisional.	1.02172e-54
NZ_CP009906.1\|WP_002213052.1\|3944610_3945801_-\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	gnl\|CDD\|185082	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI.	0
NZ_CP009906.1\|WP_002213028.1\|3957281_3958520_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	1.57028e-141
NZ_CP009906.1\|WP_002213039.1\|3950199_3952617_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	1.41205e-31
NZ_CP009906.1\|WP_002213030.1\|3956528_3957266_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.26541e-68
NZ_CP009906.1\|WP_002228570.1\|3960863_3961304_+\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NZ_CP009906.1\|WP_002213060.1\|3942068_3942533_-\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.55286e-93

>NZ_CP009906.1|WP_002213038.1|3952770_3953517_-|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NZ_CP009906.1|WP_002213039.1|3950199_3952617_-|GNAT-family-N-acetyltransferase
MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGLLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQLAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVKEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQPGANN
>NZ_CP009906.1|WP_002213046.1|3946224_3946554_-|sulfurtransferase-TusE
MLEFEGRIIDTDAQGYLKNSTDWSEALAPVLAEQEGITLTEPHWEVVRFVRAFYQEFNTSPAIRMLVKAMAQKYGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
>NZ_CP009906.1|WP_002213049.1|3945894_3946173_+|acylphosphatase
MSKIYIVAYVYGVVQGVGFRYSTQRQAQQLGVTGYAKNCDDGSVEVVASGNPQAVERLMEWIRQGGPRGARVDRLLTEPYPPTPFETFSIRY
>NZ_CP009906.1|WP_002213052.1|3944610_3945801_-|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI
MTVRLILAKGREKSLLRRHPWIFSGAVQRLEGDALSGETIDILDSQGKWLARAAYSPESQILARVWTFQQDEVIDCAFFIRRLQQAQNWRDWLAQRDGLNGYRLIAGESDGLPGITIDRFQNFLVLQLLSAGAEYQRETLVSALQHCYPECSIYDRSDVSVRKKEGLPLTQGLICGEMPPALLPISENGMQLFVDIQQGHKTGFYLDQRDSRLAARNYANGRRVLNCFSYTGAFAVAALMGNCQQVISVDTSQSVLDIAKQNIELNQLDLSKTEFVRDDVFQLLRSYRAQGEKFDLIIMDPPKFVENKSQLASACRGYKDINMLAIQLLRPGGILLSFSCSGLMPVDLFQKILADAALDAGHDIQFIEQFRQAADHPVIAAYPEGLYLKGFACRVM
>NZ_CP009906.1|WP_002213054.1|3944232_3944550_-|heat-shock-protein-HspQ
MIASKFGIGQQVRHSLHGYLGVVIDIDPEYSLAPPEPDEVANNKTLRSSPWYHVVIEDDDGQPVHTYLAEAQLTYEDVDAHPEQPSLDELAASIRHQLQAPHLRN
>NZ_CP009906.1|WP_002213056.1|3943707_3944124_+|CoA-binding-protein
MHDKDIADILKKVKTIALVGASDIPSRPSYRVMAYLLQQGYQVTPVNPKLAGELLLGQLVYAELADIPHAIDMVDVFRNSDAAYCIAQDAIAIGAKVLWLQIGVINEQAAILATDAGLQVVMDRCPKIELPRLGLEKG
>NZ_CP009906.1|WP_002213058.1|3942711_3943392_-|DUF2057-family-protein
MKLGLVAGMLAVCFSFSSVAMTLKLTPEIDLLVVDGKNMSGSLLKGADSLELNSGMHQILFKVIKPLPTDPLVLYSSPPLIVVFNAHNTRSVAIKLPVINTLRDGHQFSKNPLYQLIGDNGHPLSVRHDVLRQDHLNNSTTLETVMAAYNVGKYNASVPAFAAIPPSPVSAVPGTTIPVAGVNTPHKTASLQGENVTEQMLQYWFLQANPETQKRFLIWAKKQPIH
>NZ_CP009906.1|WP_002213060.1|3942068_3942533_-|methylglyoxal-synthase
MELTTRTIAARKHIALVSHDHCKKSLLAWVMENRDLLAQHELYATGTTGNLVQKATGIDVHCLLSGPMGGDQEVGALISEKKIDILIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNRSTADFLIGSTLFSSEVTIAIPDYDRYMQQRLDLK
>NZ_CP009906.1|WP_002221095.1|3939953_3942008_+|DNA-helicase-IV
MELKATSFGKHLSQHPYNRVRLLNAGIEVCGDKHQYLIPFNQLVSIQCKRGIVWGELEFELPQQKVVRLHGTEWQETQHFYHYLLGVWQQWSEEMSQVCAEVLHKQVESIKRIEQQDKWFKRSELGQIQVMIREAFSALPMPVERLAAFESCRADYECCLRWLQQGRHSVERCNQQWTARMLEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKKAQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLMRMYGGSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQLEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPDAEERRLLYVAITRAKHQVWLLQDTARPSIFVSQLSELGALVQRKP
>NZ_CP009906.1|WP_002213036.1|3954247_3954466_+|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NZ_CP009906.1|WP_002213034.1|3954729_3955254_+|beta-hydroxyacyl-ACP-dehydratase
MKNTELNFLKTNFLFNQDITNELNTSFGQDIIKKMIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NZ_CP009906.1|WP_002213032.1|3955243_3956527_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPEYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLIFEQAEHAKNRGAKIYAELLGASVNSDANHLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNVKKEVNIFLNNSFGMGGINSASLFSRYHG
>NZ_CP009906.1|WP_002213030.1|3956528_3957266_+|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEAILFLVAKESSYVNGAVFNVTGGIDWVY
>NZ_CP009906.1|WP_002213028.1|3957281_3958520_+|hydroxymethylglutaryl-CoA-synthase-family-protein
MNSIGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLPWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NZ_CP009906.1|WP_002213026.1|3958512_3959232_+|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NZ_CP009906.1|WP_002213025.1|3959233_3959986_+|enoyl-CoA-hydratase
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLELLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NZ_CP009906.1|WP_002213024.1|3959988_3960777_+|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQAFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NZ_CP009906.1|WP_002228570.1|3960863_3961304_+|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NZ_CP009906.1|WP_002213017.1|3961341_3961590_+|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES

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Crispr_ID: NZ_CP009906_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009906_6

4080798-4081005

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

3 spacers

DEDDh

The CRISPR arrays of NZ_CP009906_6

>merge|NZ_CP009906|6|4080798-4081005|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAAATGTTCGACGATTTATTTTATTTGTATTTCAGGTTCACTGCCGCACAGGCAGCTTAGAAAATTTATTAAAGATGCTGACAAAAAGAACTTAAGTTCACTGCCGCACAGGCAGCTTAGAAAGTCAACGCTTCACTCCCTGCGCGGGGTATAACGTTCACTGCCGCACAGGCAGCCCAATAA

>NZ_CP009906|6|3|4080798-4080945|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP009906|6|6|4080798-4081005|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCAACGCTTCACTCCCTGCGCGGGGTATAAC
GTTCACTGCCGCACAGGCAGCCCAATAA

>NZ_CP009906|6|3|4080798-4081005|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTTATTTTATTTGTATTTCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTATTAAAGATGCTGACAAAAAGAACTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCAACGCTTCACTCCCTGCGCGGGGTATAAC
GTTCACTGCCGCACAGGCAGCCCAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009906.1\|WP_002211911.1\|4090346_4091651_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP009906.1\|WP_002216311.1\|4076181_4077075_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009906.1\|WP_002211912.1\|4091659_4092082_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP009906.1\|WP_002211896.1\|4071276_4072176_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NZ_CP009906.1\|WP_002211905.1\|4082762_4083872_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187547
NZ_CP009906.1\|WP_002211898.1\|4072881_4073709_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP009906.1\|WP_002209743.1\|4084998_4086207_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NZ_CP009906.1\|WP_002211902.1\|4078911_4080303_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP009906.1\|WP_002211900.1\|4074542_4075538_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009906.1\|WP_002211916.1\|4093297_4094140_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP009906.1\|WP_002216388.1\|4086169_4089322_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP009906.1\|WP_002216393.1\|4092509_4093250_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
NZ_CP009906.1\|WP_002216312.1\|4077360_4078452_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP009906.1\|WP_002216310.1\|4075534_4076224_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009906.1\|WP_002231208.1\|4072458_4072506_-\|his-operon-leader-peptide	unknown	unknown	unknown
NZ_CP009906.1\|WP_002211917.1\|4094171_4095449_+\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NZ_CP009906.1\|WP_002217522.1\|4084305_4084623_+\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NZ_CP009906.1\|WP_002211904.1\|4081039_4082470_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP009906.1\|WP_157131899.1\|4073863_4074154_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374732
NZ_CP009906.1\|WP_002211895.1\|4069941_4071273_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853

Protein	Function_ID	Function_description	E-value
NZ_CP009906.1\|WP_002211911.1\|4090346_4091651_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17308e-74
NZ_CP009906.1\|WP_002216311.1\|4076181_4077075_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	3.90601e-98
NZ_CP009906.1\|WP_002211912.1\|4091659_4092082_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	5.0494e-57
NZ_CP009906.1\|WP_002211896.1\|4071276_4072176_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.63843e-161
NZ_CP009906.1\|WP_002211905.1\|4082762_4083872_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89947e-61
NZ_CP009906.1\|WP_002211898.1\|4072881_4073709_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.54107e-68
NZ_CP009906.1\|WP_002211902.1\|4078911_4080303_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.72025e-45
NZ_CP009906.1\|WP_002211900.1\|4074542_4075538_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.22935e-72
NZ_CP009906.1\|WP_002211916.1\|4093297_4094140_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	8.96038e-107
NZ_CP009906.1\|WP_002216388.1\|4086169_4089322_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	1.47456e-126
NZ_CP009906.1\|WP_002216393.1\|4092509_4093250_+\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.05065e-117
NZ_CP009906.1\|WP_002216312.1\|4077360_4078452_+\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP009906.1\|WP_002216310.1\|4075534_4076224_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.76633e-90
NZ_CP009906.1\|WP_002211904.1\|4081039_4082470_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP009906.1\|WP_002211917.1\|4094171_4095449_+\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NZ_CP009906.1\|WP_002217522.1\|4084305_4084623_+\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	5.26004e-59
NZ_CP009906.1\|WP_002209743.1\|4084998_4086207_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.39969e-152
NZ_CP009906.1\|WP_157131899.1\|4073863_4074154_-\|hypothetical-protein	gnl\|CDD\|374732	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein. Tai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein. The effector is Tae4, pfam14113.	4.0065e-14
NZ_CP009906.1\|WP_002211895.1\|4069941_4071273_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0

>NZ_CP009906.1|WP_002211902.1|4078911_4080303_+|APC-family-permease
MAHDATVAVGTNQTGTNNRVQLRKTLTLVQVVMMGLAYLQPMTIFDTFGIVSGLTDGHVATSYAIALIAVLFTAVSYGKLVKRFPSAGSAYTYAQKSISPNVGFMVGWSSLLDYLFMPMINILLAKIYLEAIFPGVPSWIFVGALVSLMTLFNLRGINIVANLNSVIVVVQVAIMVVFMGLLIHGVYQGEGAGTLVSARPFYSENAHLVPMITGATILCFSFLGFDGISSLSEETPNAGKVIPKAIFLTALIGGIIFIAVSYCLQLYFPDISRFTDPEASQPEIMLFVAGKFFQSVILCFSCVTVLASGMAAHAGVSRLLYVMGRDGVFPEKVFGYVHPKWRTPAINVLLVGGVALSAISFDLVTATALINFGALVAFTFVNLSVIAQFYVRERRNSTFKDHFNYLILPMIGAGTVGVLWVNLESSSMTLGLVWGAIGLSYMVWKTRAFRRALPQFTEEPAQL
>NZ_CP009906.1|WP_002216312.1|4077360_4078452_+|oxidoreductase
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>NZ_CP009906.1|WP_002216311.1|4076181_4077075_-|sugar-ABC-transporter-ATP-binding-protein
MSSIPPSRLEMRNISISFSGFHALQEVDFTLEGGSTHALIGANGAGKSTLMAILSGAHNHYRGEIFIDGQPIDIHSPRQARQHGIHVVQQEVDVALIPTLSVAENIMLDELADRGHLFNWPQLYRQAEALLEQLELKLNVRQRLESCTLAEKQQVLLARALSHQCRFLILDEPTAPLDQEESARLFRVVRRLQSEGIGIVFISHRIHELREVCDQLTVLRDGRRVSHDTMEGMSGEQIVEKMLGHTLEDISPLGERQSAAKHGCRKHYCRKHCYRSAAYMISISCAISPSHYIRAKF
>NZ_CP009906.1|WP_002216310.1|4075534_4076224_-|sugar-ABC-transporter-ATP-binding-protein
MRDISLTLHQGEILGIAGLAGAGKTELCKALFGDTPSTLERGELSGKAWRPRSPDRSVAQGLALVPEERRKEGIFIDEGIPMNLSVAADDSFSRWSLFSRRQELSWAKELIERLGIRTSSPQQKLAHLSGGNQQKVAIGKWLRGDAQVLIFDEPTKGVDIKAKQDLFSLIDQLAQQGKGIIYASGEFSELVGLCDRICVLWDGRIVAELNAAEVDEETLLLFSTGGTPQ
>NZ_CP009906.1|WP_002211900.1|4074542_4075538_-|ABC-transporter-permease
MSKELPLPDVQPWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAMALALTYIQKR
>NZ_CP009906.1|WP_157131899.1|4073863_4074154_-|hypothetical-protein
MQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSAIKDKYTRHI
>NZ_CP009906.1|WP_002211898.1|4072881_4073709_+|SDR-family-oxidoreductase
MKKVAIIGLGWLGMPLAQSLSRRGIDVVGSKTTPDGVDAARMSGINCYPLVLTPELICEPDDLAQLMAVDALVITLPASRTTAGGDHYFQAVQQVVDSALAFGVPRIIFTSSTSVYGETRGRIKESSPLQPVTVAGKTLMALEQWLHQLPHTSVDILRLAGLVGTDRHPGRFLAGKTGVKGGSQGVNLVHQEDVIAAIELLLNRPKGGHLYNLCAPIHPRKRDFYPACARALQLTPPEFAVEEQEGANREIDGSKICSELGFEYLYPDPSRMPLN
>NZ_CP009906.1|WP_002231208.1|4072458_4072506_-|his-operon-leader-peptide
MNRVQFNHHHHHHPD
>NZ_CP009906.1|WP_002211896.1|4071276_4072176_-|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESQELLSRCGIKINLQQQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGDDPRYFTLRRLDFGGCRLSLAAPLDAEYTGPQCLQDTRIATSYPHILKQYLDKQGVRFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMSVDKQQLIDRLMTRIQGVIQARESKYIMMHAPSERLDEIITLLPGAERPTILPLAGDKSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NZ_CP009906.1|WP_002211895.1|4069941_4071273_-|histidinol-dehydrogenase
MQPTNFNTLINWQQCSEEQQKALLSRPAINASERITAAVSDILDRVKAEGDSALRDFSQRFDHVQVADIRITASEIAAASARLSDDVKHAMAQAVRNIEIFHNAQKMPVVDVETQPGVRCQQITRPIASVGLYIPGGSAPLPSTVLMLGTPARIAGCQRVVLCSPPPIADEILYAAQLCGIQEVFQIGGAQAIAAMAFGSESVPKVHKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPAFIAADLLSQAEHGPDSQVILLTPDAAIAQAVAVEVEQQLALLSRADIARQALESSRLIVTNDLQQCIDISNAYGPEHLILQIRQPEEIIDQIDNAGSVFMGDWSPESAGDYASGTNHVLPTYGYTSTYSSLGLADFVKRMTVQQLTPQGLLGLASTIETLAQAEQLTAHKNAVTLRVTALNNALTAVNKE
>NZ_CP009906.1|WP_002211904.1|4081039_4082470_-|exodeoxyribonuclease-I
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
>NZ_CP009906.1|WP_002211905.1|4082762_4083872_+|NAD-dependent-epimerase/dehydratase-family-protein
MKKLLLTGATGFLGGAVLEKLLLASSDFNYLLLVRANTPEQGLMRIRENLEKFYLPNELINKININHVLLGDLAEPDSFINDVRIDDVTHVINCAAIASFGNNPLIWKVNVEGTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLLAEHCPTLPLVFARPSIVVGHTRLGCQPSSSIFWVFRMALMLRKFMCSLDDHIDVIPVDYCADALLYILEYPNLPDDIYHISAGEKGSVSFSEIDQAMSVAAKQKPVGVNYSQVEYTALVQMRNQLKGIFGPCNERLMLKAMRLYGSFAMLNVRFSNERLLSLGMPRTPRFTDYIARCVESSHGMTIQQQMAVDFK
>NZ_CP009906.1|WP_002217522.1|4084305_4084623_+|DUF496-family-protein
MDNASKPTFQDVLEFVRMFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEEVQAIIANMRGDYEDRVDDYIIKNADLSKERRELSKKLKAMGEVK
>NZ_CP009906.1|WP_002209743.1|4084998_4086207_+|IS256-family-transposase
MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL
>NZ_CP009906.1|WP_002216388.1|4086169_4089322_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MSLYRISSLHQAKQLNKNKQLNKTRISKSVVWANIVIQAIFPLSIAFTPAVMAAETVGASDEKPRSASQAEQSTANAATRLASILTNDDSAKQASSIARGTAANAGNEALQKWFNQFGSAKVQLNLDEKLSLKGSQLDVLLPLTDSPDLLTFTQLGGRYIDDRVTLNVGLGQRHFFAQQMLGYNLFIDHDASYSHTRIGVGAEYGRDFINLAANGYFGVSGWKNSPDLDKYDEKVANGFDLRSEAYLPTLPQLGGKLIYEQYFGDEVGLFGVDNRQKNPLAVTLGVNYTPIPLFTVGVDHKMGRAGMNDTRFNLGFNYAFGTPLTHQLDSDAVAIKRSLMGSRYNLVDRNNQIVMKYRKQNRVTLELPARVSGAARQTMPLVANATAQQGIDRLEWEASALTLAGGKITGSGNNWQITLPSYLSGGEGNNTYRISAIAYDTLGNASPVAYSDLVVDSHGVNTNASGLTAAPEILPANASASSVIEFNIKDNANQPITGIADELAFSLELVELPEELAKAKARSVPLKTVSHTLTKITESAPGIYQATLTSGSKPQLINITAQINGVPLADVQTKVTLIADESTATLQTSSLQIITNGSLADDTDANQIRAVVVDAYGNKLSGVQVNFTVGNNAKITETTLSDKQGGVTAAITSTKAGTYTVTAELNGVTQQIDVNFIPDAGTATLDDSDEYKLQWVTNGQVADGESTNSVQLTVVDKFGNTVPGVDVAFTTDIGAIISEVTPTDANGVATAKIISSQAKSHTVKATLNRKEQTVEVNFIADTATAEITANNFTVEVDGQVAGSGTNQVQALVVDKKGNPVANMTVNFTATNGVVVETTSAKTDENGKVTTNLSMTNVGGTISTVTATMINSANVTSTQDKPVIFYPDFTKATLNTPANTYSGFNINSGFPTTGFKNTHFQLSPHGITGANSDYDWVSSHPNVSVSNTGAITLQDNPGGKVTITATWKHDSSKVFTYDFTLNYWVGLYSSTNLSWAQANASCINAGMRLPTNREVSAGQDVRGVGSLLSLSIILCNCHRIKGDRSGGHRTR
>NZ_CP009906.1|WP_002211911.1|4090346_4091651_+|MFS-transporter
MSNFNHYPDPTLNSAIKKAWYRLMPLMFIMYFVAFIDRINVGFAKDAMSADIGLSQSAFALGAGIFFAAYALFGIPANLMMNKLGAKVWLSSTTVVWGLLSAGTGLVSNEYQFVILRFLLGVAEAGFYPGILLLASIYFPNKIRASVIGIFVLGVPAALTLGSPISGALLDMQGFLGQPGWFWMFLLEGLPAVGLGIFAFFYLDDSPATARYLNPEEKQALLTQLSIEQSDTESSSVKAVLLSPKVWHLALIYGTIQVGVYGLIFFLPSQVATLLGSTLGFKESLVAAIPWAFSALGVYYIPRYADRKTHRRNPIATLNLVVAAIGLIISAYASPVLAIAALCLCAIGFLAVQPIFWTFPAQILSGKALAAGIGFCTTMGAFFSFLAPIIRVEAESQFNSPPAGLITLALFSLLSATLIFSLKFWPAKATAEVI
>NZ_CP009906.1|WP_002211912.1|4091659_4092082_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MSAPLPYIKPGERVIIYDGVCALCTGWVNFLIRHDRRHTVRLSAVQSKKGHALLEWAGLPTDKINTLVLIENQQVYLRSEAIFRVIANLPWPWRILGVLRIFPRPLRDRCYDGIALNRYRLFGRYDAVRKLKADHERRFL
>NZ_CP009906.1|WP_002216393.1|4092509_4093250_+|SDR-family-oxidoreductase
MNLKGKKALVTAAGQGIGFNTATLFARKGAEVIASDINIAALSNIPGITAVSLDVTDTLAINDVAQAIGPIDVLFNCAGVVHSGDILTCSEQEWQFALDLNVTAMFHMIRAFLPGMIACQQGSIINMSSVASSIKGVPNRFAYSTSKAAVIGLTRSVAADYVTQGIRCNAICPGTVESPSLRQRIAVQAHAEGRSEADVFQAFAARQPIGRIGKAEEIAQLALYLASDASAYTTGTIHIIDGGWSN
>NZ_CP009906.1|WP_002211916.1|4093297_4094140_+|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGEERPALLDELGEIRDLSAHIEDISGKFLLPATLYKLRQLDSASLPLVRGEQRLGACVGHVGKFICVGLNYADHAAETGAEIPQEPVIFNKWTSAIIGPNDDIEIPRNSVKTDWEVELGVVIGTGGRYIGEANAMSYVAGYCVVNDISEREFQLEHGGTWDKGKGCDTFGPIGPWLVTRDEIPDPHQLGLWLDVDGRRYQNGSTRTMIFKIPQIISYLSRFMSLQSGDVISTGTPPGVGLGQKPPVYLHAGQIMRLGIEGLGEQCQKTIQA
>NZ_CP009906.1|WP_002211917.1|4094171_4095449_+|L-fuconate-dehydratase
MTIITALRTEDVRFPTSLELDGSDAMNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANMGKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELVRCIDFRYITDCITPEEALTLLQQRAHNKALRLEKLQDEGYPCYTTSAGWLGYPDDKLRRLCQDAVDAGFDYLKLKVGRDLEDDIRRVRITREVLGPDRKLMIDANQIWETNEAIPWVNQLAFANPWFIEEPTNPDDIEGHRRIRQGVAPVKVATGEMCQNRIMFKQFIMREAIDVVQIDACRLGGVNEVLAVMLMAAKYDLPVCPHAGGVGLCEYVQHLAMIDYLCIAGTDKGRVIEYVDHLHEHFVHPCVIKNAAYMPPEQPGFSIEMHQSSIEKYRFRV

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP009906_1	1.5\|588367\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588367-588398	32	NZ_CP009906.1	699306-699337	1.0
NZ_CP009906_1	1.10\|588367\|29\|NZ_CP009906\|PILER-CR	588367-588395	29	NZ_CP009906.1	699309-699337	1.0
NZ_CP009906_2	2.1\|1202158\|32\|NZ_CP009906\|CRISPRCasFinder	1202158-1202189	32	NZ_CP009906.1	39422-39453	1.0
NZ_CP009906_2	2.4\|1202159\|31\|NZ_CP009906\|CRT	1202159-1202189	31	NZ_CP009906.1	39422-39452	1.0
NZ_CP009906_2	2.7\|1202163\|31\|NZ_CP009906\|PILER-CR	1202163-1202193	31	NZ_CP009906.1	39422-39452	1.0

1. spacer 1.5|588367|32|NZ_CP009906|CRISPRCasFinder,CRT matches to position: 699306-699337, mismatch: 0, identity: 1.0

acatcactagcggtatcgaacaattgagcgag	CRISPR spacer
acatcactagcggtatcgaacaattgagcgag	Protospacer
********************************

2. spacer 1.10|588367|29|NZ_CP009906|PILER-CR matches to position: 699309-699337, mismatch: 0, identity: 1.0

acatcactagcggtatcgaacaattgagc	CRISPR spacer
acatcactagcggtatcgaacaattgagc	Protospacer
*****************************

3. spacer 2.1|1202158|32|NZ_CP009906|CRISPRCasFinder matches to position: 39422-39453, mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

4. spacer 2.4|1202159|31|NZ_CP009906|CRT matches to position: 39422-39452, mismatch: 0, identity: 1.0

ctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
ctgtacgcataccgccatcttgcatcagtct	Protospacer
*******************************

5. spacer 2.7|1202163|31|NZ_CP009906|PILER-CR matches to position: 39422-39452, mismatch: 0, identity: 1.0

ctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
ctgtacgcataccgccatcttgcatcagtct	Protospacer
*******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009906_2	2.1\|1202158\|32\|NZ_CP009906\|CRISPRCasFinder	1202158-1202189	32	MT374852	Yersinia phage vB_YpM_3, complete genome	12-43	0	1.0
NZ_CP009906_2	2.4\|1202159\|31\|NZ_CP009906\|CRT	1202159-1202189	31	MT374852	Yersinia phage vB_YpM_3, complete genome	12-42	0	1.0
NZ_CP009906_2	2.7\|1202163\|31\|NZ_CP009906\|PILER-CR	1202163-1202193	31	MT374852	Yersinia phage vB_YpM_3, complete genome	12-42	0	1.0
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK820641	Gordonia phage EnalisNailo, complete genome	34088-34119	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK878898	Gordonia phage Zameen, complete genome	34513-34544	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK919483	Gordonia phage Suscepit, complete genome	34514-34545	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK284520	Gordonia phage Lilas, complete genome	35799-35830	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK016492	Gordonia phage Bialota, complete genome	35265-35296	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK820642	Gordonia phage Polly, complete genome	33956-33987	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	NC_041883	Gordonia phage Attis, complete genome	31646-31677	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK814755	Gordonia phage Antonio, complete genome	34513-34544	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK875796	Gordonia phage Tayonia, complete genome	34513-34544	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK801734	Gordonia phage LordFarquaad, complete genome	31627-31658	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	MK433274	Gordonia phage Bradissa, complete genome	34554-34585	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	KU963257	Gordonia phage Kita, complete genome	34522-34553	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	NC_031251	Gordonia phage SoilAssassin, complete genome	31645-31676	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	NC_031097	Gordonia phage Zirinka, complete genome	35253-35284	6	0.812
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	138555-138586	6	0.812
NZ_CP009906_1	1.1\|588127\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588127-588158	32	CP049262	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence	69636-69667	7	0.781
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	JF974294	Aeromonas phage pIS4-A genomic sequence	21965-21996	7	0.781
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NC_021534	Vibrio phage pYD38-A genomic sequence	3299-3330	7	0.781
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	440819-440850	7	0.781
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	282870-282901	7	0.781
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	KJ433975	Mycobacterium phage 40BC, complete genome	23231-23262	7	0.781
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	KJ433973	Mycobacterium phage 39HC, complete genome	23231-23262	7	0.781
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	NC_024145	Mycobacterium phage Hosp, complete genome	21427-21458	7	0.781
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	MT133560	Pseudomonas phage fnug, complete genome	23366-23399	7	0.794
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	KU521356	Pseudomonas phage KTN4, complete genome	24115-24148	7	0.794
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	MW057919	Pseudomonas phage vB_PaeM_kmuB, complete genome	24251-24284	7	0.794
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	NC_004629	Pseudomonas phage phiKZ, complete genome	22484-22517	7	0.794
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	MN871480	UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome	259590-259623	7	0.794
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	MN871489	UNVERIFIED: Pseudomonas phage PaZh_1, complete genome	12439-12472	7	0.794
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	NC_042081	Pseudomonas phage SL2, complete genome	262490-262523	7	0.794
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	MF679145	Escherichia coli plasmid pBJ114-96, complete sequence	37586-37614	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	60831-60859	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP021340	Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence	67671-67699	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP021336	Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence	67672-67700	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP040920	Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence	33438-33466	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP024832	Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence	33830-33858	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP024817	Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence	62769-62797	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	15616-15644	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	112580-112608	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP023961	Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence	16858-16886	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	AP023222	Escherichia coli M505 plasmid pM505-b DNA, complete genome	93737-93765	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	AP023233	Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome	47570-47598	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP019075	Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence	16520-16548	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	3287-3315	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NZ_CP011063	Escherichia coli str. Sanji plasmid pSJ_98, complete sequence	37637-37665	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	JF974294	Aeromonas phage pIS4-A genomic sequence	21968-21996	7	0.759
NZ_CP009906_1	1.8\|588247\|29\|NZ_CP009906\|PILER-CR	588247-588275	29	NC_021534	Vibrio phage pYD38-A genomic sequence	3299-3327	7	0.759
NZ_CP009906_1	1.9\|588307\|29\|NZ_CP009906\|PILER-CR	588307-588335	29	NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	138555-138583	7	0.759
NZ_CP009906_6	6.2\|4080886\|32\|NZ_CP009906\|PILER-CR,CRISPRCasFinder,CRT	4080886-4080917	32	MH616963	CrAssphage sp. isolate ctbg_1, complete genome	86942-86973	7	0.781
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	DI373487	KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof	4948-4981	8	0.765
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	NC_042060	Pseudomonas phage PA7, partial genome	4948-4981	8	0.765
NZ_CP009906_1	1.6\|588427\|34\|NZ_CP009906\|CRISPRCasFinder,CRT	588427-588460	34	AP019418	Pseudomonas phage PA02 DNA, nearly complete genome	200537-200570	8	0.765
NZ_CP009906_1	1.7\|588187\|29\|NZ_CP009906\|PILER-CR	588187-588215	29	AP014500	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C79, * SEQUENCING IN PROGRESS *, 2 ordered pieces	26489-26517	8	0.724
NZ_CP009906_6	6.2\|4080886\|32\|NZ_CP009906\|PILER-CR,CRISPRCasFinder,CRT	4080886-4080917	32	NZ_CP010358	Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence	46720-46751	8	0.75
NZ_CP009906_6	6.2\|4080886\|32\|NZ_CP009906\|PILER-CR,CRISPRCasFinder,CRT	4080886-4080917	32	NC_019694	Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence	20911-20942	8	0.75
NZ_CP009906_1	1.2\|588187\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588187-588218	32	NZ_CP031943	Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence	4006-4037	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	MF679145	Escherichia coli plasmid pBJ114-96, complete sequence	37586-37617	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	60831-60862	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP021340	Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence	67671-67702	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP021336	Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence	67672-67703	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP040920	Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence	33435-33466	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP024832	Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence	33830-33861	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP024817	Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence	62769-62800	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	15616-15647	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	112580-112611	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP023961	Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence	16858-16889	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	AP023222	Escherichia coli M505 plasmid pM505-b DNA, complete genome	93734-93765	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	AP023233	Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome	47570-47601	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP019075	Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence	16520-16551	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	3287-3318	9	0.719
NZ_CP009906_1	1.3\|588247\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588247-588278	32	NZ_CP011063	Escherichia coli str. Sanji plasmid pSJ_98, complete sequence	37637-37668	9	0.719
NZ_CP009906_6	6.2\|4080886\|32\|NZ_CP009906\|PILER-CR,CRISPRCasFinder,CRT	4080886-4080917	32	MT774386	CrAssphage cr110_1, complete genome	42858-42889	9	0.719
NZ_CP009906_6	6.2\|4080886\|32\|NZ_CP009906\|PILER-CR,CRISPRCasFinder,CRT	4080886-4080917	32	NZ_CP028934	Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence	25849-25880	9	0.719
NZ_CP009906_1	1.4\|588307\|32\|NZ_CP009906\|CRISPRCasFinder,CRT	588307-588338	32	NZ_JX627581	Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence	30496-30527	10	0.688

1. spacer 2.1|1202158|32|NZ_CP009906|CRISPRCasFinder matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

2. spacer 2.4|1202159|31|NZ_CP009906|CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

ctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
ctgtacgcataccgccatcttgcatcagtct	Protospacer
*******************************

3. spacer 2.7|1202163|31|NZ_CP009906|PILER-CR matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

ctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
ctgtacgcataccgccatcttgcatcagtct	Protospacer
*******************************

4. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

5. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

6. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

7. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

8. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

9. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

10. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

11. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

12. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

13. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

14. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

15. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

16. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

17. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

18. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

tcgccattccgtgaacctgagcgcgttcgcga--	CRISPR spacer
tcgcctttccctgaacctga--gcgatcgtgacc	Protospacer
***** **** *********  *** ***.**

19. spacer 1.1|588127|32|NZ_CP009906|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

tcaggggactggcgaacaatgtctttcatgat	CRISPR spacer
acgtcgcgctggcgaacaatctctttcatgat	Protospacer
 *.  * .************ ***********

20. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

21. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

22. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

23. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

24. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

25. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

26. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

27. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to MT133560 (Pseudomonas phage fnug, complete genome) position: , mismatch: 7, identity: 0.794

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgtaac	Protospacer
. ** *. *************** *********

28. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to KU521356 (Pseudomonas phage KTN4, complete genome) position: , mismatch: 7, identity: 0.794

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgtaac	Protospacer
. ** *. *************** *********

29. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to MW057919 (Pseudomonas phage vB_PaeM_kmuB, complete genome) position: , mismatch: 7, identity: 0.794

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgtaac	Protospacer
. ** *. *************** *********

30. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to NC_004629 (Pseudomonas phage phiKZ, complete genome) position: , mismatch: 7, identity: 0.794

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgtaac	Protospacer
. ** *. *************** *********

31. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to MN871480 (UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome) position: , mismatch: 7, identity: 0.794

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgtaac	Protospacer
. ** *. *************** *********

32. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to MN871489 (UNVERIFIED: Pseudomonas phage PaZh_1, complete genome) position: , mismatch: 7, identity: 0.794

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgtaac	Protospacer
. ** *. *************** *********

33. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to NC_042081 (Pseudomonas phage SL2, complete genome) position: , mismatch: 7, identity: 0.794

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgtaac	Protospacer
. ** *. *************** *********

34. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

35. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

36. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

37. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

38. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

39. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

40. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

41. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

42. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

43. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

44. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

45. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

46. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

47. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

48. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attatctgattggcagtttctttaactgt	Protospacer
********* ***** *******..*

49. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attacctgaatggcatttgctttatgcct	Protospacer
****.************* ****.   *

50. spacer 1.8|588247|29|NZ_CP009906|PILER-CR matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.759

attatctgaatggcattttctttggcgca	CRISPR spacer
attacctgaatggcatttgctttatgcct	Protospacer
****.************* ****.   *

51. spacer 1.9|588307|29|NZ_CP009906|PILER-CR matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 7, identity: 0.759

tcgccattccgtgaacctgagcgcgttcg	CRISPR spacer
tcgcctttccctgaacctgagcgatcgtg	Protospacer
***** **** ************  . .*

52. spacer 6.2|4080886|32|NZ_CP009906|PILER-CR,CRISPRCasFinder,CRT matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 7, identity: 0.781

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
aattataaaagatgctgataaaaagattatta	Protospacer
* **** ***********.******* . * *

53. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to DI373487 (KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof) position: , mismatch: 8, identity: 0.765

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgcaac	Protospacer
. ** *. *************** ******.**

54. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to NC_042060 (Pseudomonas phage PA7, partial genome) position: , mismatch: 8, identity: 0.765

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgcaac	Protospacer
. ** *. *************** ******.**

55. spacer 1.6|588427|34|NZ_CP009906|CRISPRCasFinder,CRT matches to AP019418 (Pseudomonas phage PA02 DNA, nearly complete genome) position: , mismatch: 8, identity: 0.765

tcagtcccgttatggtgctggtgttgcccgtaag	CRISPR spacer
cgagactggttatggtgctggtggtgcccgcaac	Protospacer
. ** *. *************** ******.**

56. spacer 1.7|588187|29|NZ_CP009906|PILER-CR matches to AP014500 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C79, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 8, identity: 0.724

gaaaaggtaagatgggcaagcttctagta	CRISPR spacer
ggttgtagaagatgtgcaagcttctagta	Protospacer
*.  . . ****** **************

57. spacer 6.2|4080886|32|NZ_CP009906|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaatgatgctgacgaaaatatggcac	Protospacer
********* *********.**** *   .*

58. spacer 6.2|4080886|32|NZ_CP009906|PILER-CR,CRISPRCasFinder,CRT matches to NC_019694 (Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaaagaagctgccaaaagagcatcaa	Protospacer
************ **** *****...  *.**

59. spacer 1.2|588187|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaaggtaagatgggcaagcttctagtagtt	CRISPR spacer
ttatgagaaagatgggcaagcttttagtggta	Protospacer
  * ..* ***************.****.**

60. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

61. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

62. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

63. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

64. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

65. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

66. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

67. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

68. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat-----	CRISPR spacer
attatctgattggcagtttctttaac-----tgttta	Protospacer
********* ***** *******..*     *

69. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

70. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

71. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

72. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

73. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

74. spacer 1.3|588247|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

75. spacer 6.2|4080886|32|NZ_CP009906|PILER-CR,CRISPRCasFinder,CRT matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
tgctattgaagatgctgataaaaagaaacttg	Protospacer
  .****.**********.******** .* .

76. spacer 6.2|4080886|32|NZ_CP009906|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
gcacattacagacgctgacaaaaagaaagtta	Protospacer
.. .**** ***.**************  * *

77. spacer 1.4|588307|32|NZ_CP009906|CRISPRCasFinder,CRT matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
ctaacgagccgtgaacctcagcgcattcgcgt	Protospacer
... *.  ********** *****.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3098 : 63616

Escherichia_phage(15.15%)

tail,tRNA,transposase,integrase

attL 35150:35180|attR 63807:63837

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211204.1\|3098_4895_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	2.8e-11	27.3
WP_002211203.1\|4894_5338_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_002211202.1\|5395_6139_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002211201.1\|6347_6869_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	6.5e-09	32.4
WP_002213759.1\|7076_7535_+\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002211199.1\|7862_8477_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_002211198.1\|8638_9643_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	4.7e-08	27.8
WP_002211197.1\|9697_10483_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_002228434.1\|10479_11238_-	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	1.2e-16	30.3
WP_002227944.1\|11313_12270_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_002228437.1\|12290_13607_+	murein DD-endopeptidase MepM	G3MBP9	Bacillus_virus	2.4e-15	44.5
WP_002211194.1\|13873_14836_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_002211193.1\|15180_16623_-	pyruvate kinase	NA	NA	NA	NA
WP_002211192.1\|16952_17822_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_002211191.1\|18174_19659_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	1.2e-79	36.6
WP_002211190.1\|19900_20542_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_002211188.1\|21256_21700_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_002211187.1\|21686_22016_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_002211186.1\|22147_22492_-	RidA family protein	NA	NA	NA	NA
WP_002211185.1\|22622_24527_+	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	4.5e-92	32.6
WP_002211184.1\|24598_25297_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_002211183.1\|25433_26039_+	Slp family lipoprotein	NA	NA	NA	NA
WP_087768167.1\|26039_26147_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002220632.1\|26681_28370_+	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	3.0e-31	28.9
WP_002211181.1\|28529_29651_+	ribonuclease D	NA	NA	NA	NA
WP_002211180.1\|29887_30157_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_002211179.1\|30160_30973_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_002220631.1\|30997_31684_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_002211743.1\|32404_32677_+	hypothetical protein	NA	NA	NA	NA
WP_002215627.1\|32817_33903_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_002211740.1\|33973_34630_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_002211739.1\|34732_35179_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
35150:35180	attL	NA	NA	NA	NA
WP_002211738.1\|35205_36444_-\|integrase	site-specific integrase	Q20GI2	Phage_258-320	2.3e-121	53.3
WP_071883606.1\|37535_37766_+\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	1.5e-18	98.0
WP_002211721.1\|38428_39541_+	hypothetical protein	I6PD76	Cronobacter_phage	6.0e-121	58.2
WP_002211720.1\|39662_40436_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.8e-69	62.3
WP_002211719.1\|40449_41655_+	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	1.8e-142	79.2
WP_002211718.1\|41702_42185_+	hypothetical protein	G8C7P9	Escherichia_phage	6.4e-27	46.1
WP_002211717.1\|42181_42436_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.2e-18	53.1
WP_002211716.1\|42437_42788_+	hypothetical protein	I6PD77	Cronobacter_phage	6.9e-31	56.0
WP_002211715.1\|42789_43374_+	hypothetical protein	G8C7Q1	Escherichia_phage	3.6e-48	52.1
WP_002211714.1\|43370_43778_+	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_002211713.1\|43843_44764_+\|tail	phage tail protein	I6PBN6	Cronobacter_phage	4.4e-61	49.1
WP_002211712.1\|44776_45088_+	hypothetical protein	I6PDG2	Cronobacter_phage	1.4e-30	58.3
WP_071525538.1\|45135_45396_+	hypothetical protein	A0A0S2SY90	Pseudomonas_phage	3.7e-13	50.0
WP_002211711.1\|45396_48900_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	5.2e-118	33.2
WP_002211710.1\|48902_49244_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.7e-21	50.0
WP_002211709.1\|50125_50878_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	9.4e-102	67.7
WP_002211708.1\|50880_51591_+	peptidase P60	K7P6F5	Enterobacteria_phage	1.3e-108	76.8
WP_002211707.1\|51851_52484_+	hypothetical protein	NA	NA	NA	NA
WP_002211706.1\|52562_52994_-	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	2.5e-30	58.4
WP_002211705.1\|53117_53285_+	hypothetical protein	G9L6D7	Escherichia_phage	5.2e-13	61.8
WP_002211704.1\|53358_54366_+	hypothetical protein	A0A2H4J0P1	uncultured_Caudovirales_phage	4.1e-36	33.0
WP_002214482.1\|54464_55016_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	9.5e-27	58.0
WP_002211701.1\|55158_55374_+	hypothetical protein	NA	NA	NA	NA
WP_002211700.1\|55429_56050_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	3.2e-55	57.0
WP_002359202.1\|56224_56446_-	hypothetical protein	NA	NA	NA	NA
WP_002211698.1\|56621_59825_+	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	60.5
WP_002211697.1\|59824_60823_+	hypothetical protein	NA	NA	NA	NA
WP_002211696.1\|60839_61757_+	hypothetical protein	NA	NA	NA	NA
WP_097608205.1\|61818_62187_+\|tail	phage tail protein	B6SCW7	Bacteriophage	5.0e-08	42.0
WP_002209743.1\|62407_63616_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
63807:63837	attR	NA	NA	NA	NA

DBSCAN-SWA_2

376616 : 439634

Tupanvirus(18.18%)

protease,tRNA,transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211831.1\|376616_379004_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002220280.1\|379017_380001_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.6e-35	38.5
WP_152328947.1\|380357_380405_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_002211833.1\|380499_380856_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_002211834.1\|380893_381091_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_002227898.1\|381187_381739_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_002211836.1\|381742_383671_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-127	37.1
WP_002216696.1\|384061_384274_+	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	9.9e-09	42.0
WP_002211839.1\|385032_385284_-	hypothetical protein	NA	NA	NA	NA
WP_002211840.1\|385601_386285_+	MarC family NAAT transporter	NA	NA	NA	NA
WP_002216686.1\|386406_387069_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_002211842.1\|387280_388249_+	iron/manganese ABC transporter substrate-binding protein YfeA	NA	NA	NA	NA
WP_002211843.1\|388245_389136_+	iron/manganese ABC transporter ATP-binding protein YfeB	A0A1V0SKJ1	Klosneuvirus	2.9e-09	27.5
WP_002211844.1\|389135_390020_+	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA
WP_002211845.1\|390016_390910_+	iron/manganese ABC transporter permease subunit YfeD	NA	NA	NA	NA
WP_002216683.1\|390977_391190_+	hypothetical protein	NA	NA	NA	NA
WP_002211846.1\|391214_392090_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_002211847.1\|392218_392773_-	yfeABCD regulator yfeE	NA	NA	NA	NA
WP_002220277.1\|393183_393849_+	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_002210828.1\|395353_395704_-	cupin domain-containing protein	NA	NA	NA	NA
WP_002210829.1\|396039_396876_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_002210830.1\|396967_397729_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-20	32.9
WP_002220274.1\|398064_398604_+	hypothetical protein	NA	NA	NA	NA
WP_002220836.1\|400472_401690_+	hypothetical protein	NA	NA	NA	NA
WP_002210832.1\|401730_402621_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_002210833.1\|402613_403534_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_002210834.1\|403547_404675_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.6e-12	26.5
WP_002210835.1\|404690_405983_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210836.1\|406280_406991_+	porin	NA	NA	NA	NA
WP_002210837.1\|407470_408019_+	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	4.0e-09	32.9
WP_002210838.1\|408222_409614_+	L-cystine transporter	NA	NA	NA	NA
WP_002210839.1\|409828_410680_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.3e-11	28.8
WP_002210840.1\|411064_411856_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_002210841.1\|412042_413209_-	oligogalacturonate lyase	NA	NA	NA	NA
WP_002210842.1\|413535_414903_+	MFS transporter	NA	NA	NA	NA
WP_002210843.1\|414956_415760_-	molecular chaperone	NA	NA	NA	NA
WP_002210844.1\|416915_419528_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002215118.1\|419609_420389_-	fimbrial chaperone	NA	NA	NA	NA
WP_002210846.1\|420541_421084_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_002210847.1\|421741_422623_-\|protease	protease HtpX	NA	NA	NA	NA
WP_002210848.1\|423096_425169_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	4.0e-86	34.8
WP_002210849.1\|425188_425902_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_002210850.1\|425997_426495_-	GAF domain-containing protein	NA	NA	NA	NA
WP_032484561.1\|426726_427965_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_002220828.1\|427942_430585_+	PqiB family protein	NA	NA	NA	NA
WP_002210852.1\|431063_431618_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216613.1\|431623_432154_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216611.1\|432174_432732_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002210856.1\|432762_433515_+	molecular chaperone	NA	NA	NA	NA
WP_002210857.1\|433685_436133_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002210858.1\|436338_437328_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_002210859.1\|437535_437775_+	YebV family protein	NA	NA	NA	NA
WP_002215943.1\|437884_438274_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_144405800.1\|438680_439634_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.5e-165	99.0

DBSCAN-SWA_3

1050085 : 1058635

Bacillus_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002212210.1\|1050085_1051285_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	7.1e-27	37.0
WP_002212211.1\|1051960_1052932_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N7CCA3	Skermania_phage	3.1e-137	74.3
WP_002212212.1\|1053056_1055207_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.1e-211	51.8
WP_002215935.1\|1055188_1055593_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	3.5e-10	32.8
WP_002212214.1\|1055606_1055843_-	redoxin NrdH	V5UN81	Mycobacterium_phage	5.9e-18	53.3
WP_002212215.1\|1056363_1056729_+	acid shock protein	NA	NA	NA	NA
WP_002209743.1\|1057426_1058635_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

DBSCAN-SWA_4

2084442 : 2185973

Escherichia_phage(30.77%)

protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002216348.1\|2084442_2085279_+\|protease	rhomboid family intramembrane serine protease GlpG	NA	NA	NA	NA
WP_002208930.1\|2085313_2086072_+	DeoR/GlpR family transcriptional regulator	NA	NA	NA	NA
WP_001297096.1\|2086838_2087618_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_042669198.1\|2087617_2088640_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	2.7e-200	99.4
WP_002214014.1\|2089773_2092140_-	EAL domain-containing protein	NA	NA	NA	NA
WP_002214016.1\|2092143_2092341_-	hypothetical protein	NA	NA	NA	NA
WP_002211643.1\|2092779_2094057_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002211642.1\|2094069_2097189_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002211641.1\|2097323_2098814_-	ShET2/EspL2 family type III secretion system effector toxin	NA	NA	NA	NA
WP_002211640.1\|2099091_2099679_+	hypothetical protein	NA	NA	NA	NA
WP_011566339.1\|2100532_2111650_+	autotransporter adhesin YapH	A0A2L1IV18	Escherichia_phage	1.6e-133	37.8
WP_002211637.1\|2111752_2113633_-	hypothetical protein	NA	NA	NA	NA
WP_011055744.1\|2114028_2114115_-	hypothetical protein	NA	NA	NA	NA
WP_002214025.1\|2114195_2115071_-	hypothetical protein	NA	NA	NA	NA
WP_002213775.1\|2115400_2115859_+\|transposase	IS200/IS605-like element IS1541B family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002211636.1\|2115990_2117808_-	hypothetical protein	NA	NA	NA	NA
WP_002211634.1\|2118526_2120083_+	AbgT family transporter	NA	NA	NA	NA
WP_002211633.1\|2120160_2121393_+	peptidase T	A0A0K2CPK3	Brevibacillus_phage	1.2e-05	39.1
WP_002211632.1\|2121780_2123853_+	TonB-dependent receptor	NA	NA	NA	NA
WP_071883611.1\|2128948_2129230_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	9.7e-44	97.8
WP_002211387.1\|2129437_2135896_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	8.5e-42	25.0
WP_002214915.1\|2135903_2137592_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	3.1e-36	25.0
WP_011566340.1\|2137604_2143388_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	1.3e-41	31.3
WP_002224891.1\|2143384_2144455_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_002211390.1\|2144451_2145579_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_002214925.1\|2145571_2146336_+	thioesterase	NA	NA	NA	NA
WP_002211392.1\|2146325_2147630_+	MFS transporter	NA	NA	NA	NA
WP_002211394.1\|2149393_2151151_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.7e-34	24.0
WP_002231397.1\|2151473_2152265_-	hypothetical protein	NA	NA	NA	NA
WP_002228079.1\|2152783_2153182_-	hypothetical protein	NA	NA	NA	NA
WP_002223676.1\|2154721_2156065_+	gluconate permease GntP	NA	NA	NA	NA
WP_002211399.1\|2161484_2165255_+	autotransporter adhesin YapV	NA	NA	NA	NA
WP_011566341.1\|2165840_2168090_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.2e-27	27.0
WP_002211401.1\|2168115_2169435_+	hypothetical protein	NA	NA	NA	NA
WP_002211402.1\|2169448_2173765_+	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	1.8e-27	49.6
WP_097608211.1\|2173895_2174282_+	hypothetical protein	NA	NA	NA	NA
WP_002211404.1\|2174825_2175239_+	hypothetical protein	NA	NA	NA	NA
WP_002211405.1\|2175418_2176789_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_002211406.1\|2177070_2178090_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002211407.1\|2178383_2179547_+	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_100067904.1\|2179436_2180791_-\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7
WP_002228704.1\|2180841_2181585_+	type VI secretion protein ImpG	NA	NA	NA	NA
WP_002213885.1\|2181548_2182637_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002212103.1\|2182762_2184079_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_002212104.1\|2184078_2184624_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002212105.1\|2184626_2185973_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_5

2957154 : 3033790

Helicobacter_phage(13.33%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213759.1\|2957154_2957613_-\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002210051.1\|2958017_2959193_+	DNA repair ATPase	NA	NA	NA	NA
WP_002220957.1\|2959299_2960646_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_002228699.1\|2960899_2961751_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_002210048.1\|2961940_2962546_-	SIS domain-containing protein	NA	NA	NA	NA
WP_002210047.1\|2962542_2964180_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_002210046.1\|2964198_2965152_-	ABC transporter permease	NA	NA	NA	NA
WP_002210045.1\|2965153_2966143_-	ABC transporter permease	NA	NA	NA	NA
WP_002210044.1\|2966135_2967632_-	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-13	26.7
WP_002210043.1\|2967835_2968825_-	autoinducer 2 ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210042.1\|2969618_2970539_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	6.8e-78	53.5
WP_002210041.1\|2970690_2971878_+	hypothetical protein	NA	NA	NA	NA
WP_002215816.1\|2972095_2973745_-	Na+/H+ antiporter	NA	NA	NA	NA
WP_002210039.1\|2974093_2975449_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.1e-164	74.0
WP_002210038.1\|2975902_2976106_+	DNA-damage-inducible protein J	NA	NA	NA	NA
WP_002210036.1\|2976724_2977540_-	aliphatic sulfonates ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	34.2
WP_002213853.1\|2977536_2978331_-	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
WP_002210034.1\|2978342_2979491_-	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA
WP_002220949.1\|2979509_2980646_-	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210032.1\|2980660_2981242_-	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_002210030.1\|2981712_2982414_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_002210028.1\|2982570_2983500_+	ribokinase	NA	NA	NA	NA
WP_002210027.1\|2983505_2984009_+	D-ribose pyranase	NA	NA	NA	NA
WP_002210026.1\|2984170_2985037_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002210669.1\|2989036_2990221_+	elongation factor Tu	A0A2K9L516	Tupanvirus	2.0e-13	26.9
WP_002210670.1\|2990471_2990855_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_002210671.1\|2990856_2991402_+	transcription termination/antitermination protein NusG	A0A291AUS6	Sinorhizobium_phage	5.9e-13	28.3
WP_002210672.1\|2991592_2992021_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_002210673.1\|2992024_2992729_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_002210674.1\|2993093_2993591_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_002210675.1\|2993657_2994026_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_002210676.1\|2994368_2998397_+	DNA-directed RNA polymerase subunit beta	A0A0N9R0J7	Chrysochromulina_ericina_virus	1.2e-22	29.0
WP_002210677.1\|2998525_3002746_+	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	8.5e-67	27.0
WP_002213759.1\|3002872_3003331_-\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002210678.1\|3003762_3004893_-	2-iminoacetate synthase ThiH	NA	NA	NA	NA
WP_002228257.1\|3004885_3005701_-	thiazole synthase	NA	NA	NA	NA
WP_002217275.1\|3005702_3005918_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_002210680.1\|3005914_3006712_-	HesA/MoeB/ThiF family protein	A0A1V0SAV8	Catovirus	1.6e-11	27.8
WP_002210681.1\|3006701_3007376_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_002210682.1\|3007362_3009408_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_002210683.1\|3009783_3010293_-	sigma D regulator	NA	NA	NA	NA
WP_002210684.1\|3010389_3011172_+	NAD(+) diphosphatase	NA	NA	NA	NA
WP_002210685.1\|3011264_3012050_+	hypothetical protein	NA	NA	NA	NA
WP_002210686.1\|3012168_3013236_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_002210687.1\|3013265_3014006_+	deoxyribonuclease V	NA	NA	NA	NA
WP_002210688.1\|3014051_3014642_+	YjaG family protein	NA	NA	NA	NA
WP_002210689.1\|3014830_3015106_+	DNA-binding protein HU-alpha	A7KV42	Bacillus_phage	3.6e-19	55.6
WP_002355296.1\|3015155_3015809_+	DUF1481 domain-containing protein	NA	NA	NA	NA
WP_002210691.1\|3015956_3017243_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_002210692.1\|3017302_3018892_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.2e-68	49.4
WP_002218887.1\|3019359_3019545_-	hypothetical protein	NA	NA	NA	NA
WP_086016626.1\|3025212_3026311_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-46	39.2
WP_001297096.1\|3026976_3027756_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002210479.1\|3029901_3030420_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_002210478.1\|3030493_3030937_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002210477.1\|3030969_3032814_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002210476.1\|3032806_3033790_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_6

3386100 : 3447583

Escherichia_phage(42.86%)

protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042669233.1\|3386100_3387123_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	2.7e-200	99.4
WP_001297096.1\|3387122_3387902_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002228141.1\|3388154_3388739_+	DUF4232 domain-containing protein	NA	NA	NA	NA
WP_002208945.1\|3388855_3389341_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_002208944.1\|3389482_3390400_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_002208943.1\|3390635_3391967_-	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.2e-43	29.8
WP_002208942.1\|3392037_3392562_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_002208941.1\|3392661_3393507_-	cell division protein FtsN	NA	NA	NA	NA
WP_002216730.1\|3393572_3394601_-	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA
WP_002208938.1\|3394953_3397152_-	primosomal protein N'	NA	NA	NA	NA
WP_002216737.1\|3397393_3397609_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_002208936.1\|3398133_3398589_-	hypothetical protein	NA	NA	NA	NA
WP_002208935.1\|3398937_3399255_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_002208934.1\|3400794_3403230_+	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA
WP_002208933.1\|3403462_3404347_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_100067904.1\|3404524_3405879_-\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7
WP_002211645.1\|3406150_3407575_+	MFS transporter	NA	NA	NA	NA
WP_002211646.1\|3407833_3410014_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_002211647.1\|3410085_3411414_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA
WP_002211648.1\|3411410_3413159_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_002211649.1\|3413155_3414106_-	acetyltransferase	NA	NA	NA	NA
WP_002211651.1\|3416000_3417224_+	MFS transporter	NA	NA	NA	NA
WP_002228661.1\|3417171_3417366_+	hypothetical protein	NA	NA	NA	NA
WP_002211652.1\|3417513_3418347_-	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA
WP_002211654.1\|3418723_3420100_-	peptidase	NA	NA	NA	NA
WP_002211655.1\|3420661_3421405_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_002215903.1\|3421385_3422036_-	acyl-homoserine-lactone synthase	NA	NA	NA	NA
WP_002215902.1\|3423210_3423861_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002215900.1\|3424311_3424707_+	lipoprotein	NA	NA	NA	NA
WP_002211662.1\|3426982_3427483_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002215896.1\|3427525_3429070_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002211664.1\|3429081_3430434_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002210015.1\|3430430_3431117_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002228049.1\|3431116_3432853_+	OmpA family protein	NA	NA	NA	NA
WP_002210014.1\|3432856_3433348_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_011566237.1\|3433765_3436414_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.8e-91	29.4
WP_002210012.1\|3436410_3438759_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.1e-18	33.3
WP_002210011.1\|3438773_3440996_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_016257642.1\|3441139_3441496_+	hypothetical protein	NA	NA	NA	NA
WP_002216110.1\|3441669_3441864_+	hypothetical protein	NA	NA	NA	NA
WP_002210010.1\|3443088_3443724_+	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002210009.1\|3443739_3446037_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002210008.1\|3446023_3446791_+	hypothetical protein	NA	NA	NA	NA
WP_086016632.1\|3446886_3447583_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.3e-60	48.5

DBSCAN-SWA_7

3488010 : 3551064

Escherichia_phage(25.0%)

protease,tRNA,transposase,integrase

attL 3513909:3513923|attR 3548136:3548150

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002228653.1\|3488010_3488523_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_002209971.1\|3488715_3489870_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_002209969.1\|3491076_3493056_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002213775.1\|3493256_3493715_+\|transposase	IS200/IS605-like element IS1541B family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002209968.1\|3493925_3494246_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_071525520.1\|3494279_3494390_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002209967.1\|3494535_3495288_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_002209965.1\|3495778_3497773_+	transketolase	NA	NA	NA	NA
WP_002213759.1\|3498079_3498538_+\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002209964.1\|3498878_3499895_+	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_002209963.1\|3499997_3501161_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_002209962.1\|3501280_3502360_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_002209961.1\|3502797_3503667_+	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA
WP_001297096.1\|3504446_3505226_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_042669234.1\|3505225_3506248_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.0e-199	98.8
WP_002209959.1\|3506696_3507476_+	oxidative stress defense protein	NA	NA	NA	NA
WP_002209958.1\|3507486_3508395_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_002209957.1\|3508736_3509393_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_002209956.1\|3509699_3510941_+	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	2.1e-98	46.5
WP_002209955.1\|3511205_3511802_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_002209954.1\|3512165_3512495_-	cell division protein ZapA	NA	NA	NA	NA
WP_002209953.1\|3512831_3513410_+	YecA family protein	NA	NA	NA	NA
WP_002209952.1\|3513497_3514811_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
3513909:3513923	attL	NA	NA	NA	NA
WP_002209951.1\|3514879_3516058_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_002209950.1\|3516230_3517451_+	FAD-dependent 2-octaprenylphenol hydroxylase	NA	NA	NA	NA
WP_002209949.1\|3518171_3519269_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_002209948.1\|3519337_3519724_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_002209947.1\|3519935_3522815_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.7e-268	52.3
WP_002209946.1\|3523192_3523630_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_002209943.1\|3526919_3528023_+	hypothetical protein	NA	NA	NA	NA
WP_002209942.1\|3528224_3528926_+	hemolysin III family protein	NA	NA	NA	NA
WP_002209941.1\|3529183_3529681_+	DUF2165 family protein	NA	NA	NA	NA
WP_002209940.1\|3529753_3530746_-\|tRNA	tRNA-modifying protein YgfZ	NA	NA	NA	NA
WP_002209939.1\|3531062_3531329_+	FAD assembly factor SdhE	NA	NA	NA	NA
WP_002215144.1\|3531309_3531735_+	membrane protein	NA	NA	NA	NA
WP_002209937.1\|3531734_3532433_+	two-component system response regulator CreB	NA	NA	NA	NA
WP_002209936.1\|3532457_3533876_+	two-component system sensor histidine kinase CreC	NA	NA	NA	NA
WP_002220113.1\|3533996_3535454_+	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_002209934.1\|3535543_3536062_-	flavodoxin FldB	NA	NA	NA	NA
WP_002209933.1\|3536168_3537068_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	8.5e-33	29.7
WP_002209932.1\|3537098_3537815_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA
WP_002209931.1\|3537821_3539555_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.6e-64	29.7
WP_002228062.1\|3539733_3540831_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	5.4e-05	39.0
WP_002209930.1\|3540841_3542359_+\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.1e-85	37.0
WP_001297096.1\|3543048_3543828_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|3543827_3544850_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002220106.1\|3544906_3545965_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.0e-113	60.4
WP_002209928.1\|3546046_3546232_-	hypothetical protein	NA	NA	NA	NA
WP_002214785.1\|3546829_3547090_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	7.4e-06	36.0
WP_002209925.1\|3547152_3547515_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002214787.1\|3547678_3547975_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA
WP_002209924.1\|3547974_3548373_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
3548136:3548150	attR	NA	NA	NA	NA
WP_002209923.1\|3548772_3551064_-	DNA primase	Q7M2A8	Enterobacteria_phage	7.2e-153	40.5

DBSCAN-SWA_8

3837228 : 3926388

Helicobacter_phage(10.71%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211351.1\|3837228_3839178_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	8.8e-35	37.7
WP_002211350.1\|3839458_3839722_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-16	59.7
WP_002211349.1\|3840082_3840403_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	8.2e-15	42.7
WP_002211348.1\|3840428_3842705_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.4e-166	41.7
WP_002213759.1\|3842997_3843456_+\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002211347.1\|3843827_3844046_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002211346.1\|3844211_3844922_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_002211344.1\|3845140_3846865_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	3.3e-17	31.8
WP_002217690.1\|3846867_3848634_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	6.8e-26	24.9
WP_002211341.1\|3849092_3850055_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	4.9e-63	45.7
WP_002211340.1\|3850821_3851316_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_002220033.1\|3851438_3855338_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.5e-89	48.8
WP_002211338.1\|3855530_3856139_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_002228009.1\|3856149_3857493_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.4e-76	39.4
WP_002211336.1\|3857734_3859027_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.0e-92	43.5
WP_002211334.1\|3860568_3861303_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	3.6e-21	27.4
WP_002211333.1\|3862289_3862964_+	glycosyltransferase family 25 protein	A0A2H4UUT1	Bodo_saltans_virus	7.8e-31	40.5
WP_002211332.1\|3863081_3865364_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.6e-157	41.2
WP_002211331.1\|3865419_3866277_-	formate transporter FocA	NA	NA	NA	NA
WP_002211330.1\|3866973_3868740_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_002211329.1\|3868888_3869926_+	L-asparaginase 2	NA	NA	NA	NA
WP_002211328.1\|3870194_3871289_+	hemagglutinin	B0FIT1	Escherichia_phage	3.7e-06	32.7
WP_002211327.1\|3871309_3873157_+	hypothetical protein	NA	NA	NA	NA
WP_002211326.1\|3873523_3874609_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	4.4e-84	46.1
WP_002211325.1\|3874771_3876058_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002211324.1\|3876370_3877063_+	(d)CMP kinase	NA	NA	NA	NA
WP_002211323.1\|3877236_3878910_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_002211322.1\|3878970_3879255_+	integration host factor subunit beta	A7KV42	Bacillus_phage	2.4e-10	40.2
WP_002211321.1\|3879801_3882093_+	ComEC family protein	NA	NA	NA	NA
WP_002211320.1\|3882128_3883877_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	8.7e-66	31.5
WP_002211319.1\|3883873_3884860_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_042669235.1\|3885910_3886690_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.2e-138	99.2
WP_042669236.1\|3886689_3887712_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	2.7e-200	99.4
WP_002211317.1\|3889044_3889254_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.0e-10	50.0
WP_002211315.1\|3889801_3889984_+	hypothetical protein	NA	NA	NA	NA
WP_002211314.1\|3889980_3890733_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_002211313.1\|3891095_3891989_+	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_002211311.1\|3892761_3893547_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_002211310.1\|3893543_3894866_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_002211309.1\|3894846_3895575_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_002211308.1\|3895571_3900029_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_002213759.1\|3900244_3900703_+\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002217987.1\|3900986_3902843_+	L,D-transpeptidase	NA	NA	NA	NA
WP_002211305.1\|3903066_3903615_+	YcbK family protein	A0A0K1LLY2	Rhodobacter_phage	7.8e-05	34.7
WP_002211304.1\|3903675_3904323_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	2.2e-22	32.3
WP_002430096.1\|3904476_3904593_-	hypothetical protein	NA	NA	NA	NA
WP_002211303.1\|3904746_3905937_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_002354007.1\|3906193_3907273_-	porin OmpF	Q1MVN1	Enterobacteria_phage	3.2e-111	56.5
WP_002211301.1\|3907573_3908974_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	6.5e-80	35.2
WP_002228013.1\|3909472_3910678_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_002220013.1\|3911393_3914009_+	aminopeptidase N	NA	NA	NA	NA
WP_002211296.1\|3914644_3915655_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_002211295.1\|3915837_3916389_+	cell division protein ZapC	NA	NA	NA	NA
WP_002363919.1\|3916414_3917524_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_002211293.1\|3917626_3919747_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_002211292.1\|3919752_3921666_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.5e-47	28.9
WP_002211291.1\|3921794_3923081_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_002211290.1\|3923067_3924720_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_002211289.1\|3924716_3925295_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_002228015.1\|3925564_3925732_+	ribosome modulation factor	NA	NA	NA	NA
WP_002213775.1\|3925929_3926388_+\|transposase	IS200/IS605-like element IS1541B family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0

DBSCAN-SWA_9

3931021 : 4004256

Helicobacter_phage(12.5%)

protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002224683.1\|3931021_3932773_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_002226586.1\|3932983_3933439_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_002213775.1\|3933606_3934065_-\|transposase	IS200/IS605-like element IS1541B family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002213066.1\|3934254_3935316_-	porin OmpA	NA	NA	NA	NA
WP_002213065.1\|3935673_3936180_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_002213064.1\|3936408_3937044_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_002213063.1\|3937145_3939284_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_002213062.1\|3939313_3939760_-	YccF domain-containing protein	NA	NA	NA	NA
WP_002221095.1\|3939953_3942008_+	DNA helicase IV	A7KV33	Bacillus_phage	1.5e-16	25.8
WP_002213060.1\|3942068_3942533_-	methylglyoxal synthase	NA	NA	NA	NA
WP_002213058.1\|3942711_3943392_-	DUF2057 family protein	NA	NA	NA	NA
WP_002213056.1\|3943707_3944124_+	CoA-binding protein	NA	NA	NA	NA
WP_002213054.1\|3944232_3944550_-	heat shock protein HspQ	NA	NA	NA	NA
WP_002213052.1\|3944610_3945801_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	W6LLI2	Streptococcus_phage	2.1e-26	28.1
WP_002213049.1\|3945894_3946173_+	acylphosphatase	NA	NA	NA	NA
WP_002213046.1\|3946224_3946554_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_002213039.1\|3950199_3952617_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002213038.1\|3952770_3953517_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.3e-14	31.4
WP_002213036.1\|3954247_3954466_+	hypothetical protein	NA	NA	NA	NA
WP_002213034.1\|3954729_3955254_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_002213032.1\|3955243_3956527_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_002213030.1\|3956528_3957266_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002213028.1\|3957281_3958520_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_002213026.1\|3958512_3959232_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_002213025.1\|3959233_3959986_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_002213024.1\|3959988_3960777_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002228570.1\|3960863_3961304_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_002213017.1\|3961341_3961590_+	acyl carrier protein	NA	NA	NA	NA
WP_002213016.1\|3961688_3962537_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_002213014.1\|3965478_3965979_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002214707.1\|3966021_3967572_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002213011.1\|3967583_3968936_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002214568.1\|3969616_3971353_+	OmpA family protein	NA	NA	NA	NA
WP_002210014.1\|3971356_3971848_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002211927.1\|3972235_3974878_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.6e-92	31.6
WP_002211928.1\|3974880_3977229_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.5e-17	32.1
WP_002211929.1\|3977244_3979545_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002211930.1\|3979541_3980315_+	hypothetical protein	NA	NA	NA	NA
WP_002211931.1\|3980468_3980729_+	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002211932.1\|3980744_3982928_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002211935.1\|3985734_3986967_+	hypothetical protein	NA	NA	NA	NA
WP_002211936.1\|3986963_3990386_+	type VI secretion system membrane subunit	NA	NA	NA	NA
WP_002211938.1\|3992048_3993107_+	PAAR domain protein	NA	NA	NA	NA
WP_002211939.1\|3993121_3993577_+	hypothetical protein	NA	NA	NA	NA
WP_002211940.1\|3993797_3995561_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002211941.1\|3995524_3996610_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002214552.1\|3996584_3997166_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002211943.1\|3997165_3997618_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002211944.1\|3997642_3999010_+	membrane protein	NA	NA	NA	NA
WP_002211945.1\|3999221_3999845_-	hypothetical protein	NA	NA	NA	NA
WP_002227996.1\|4000527_4002123_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	6.1e-58	28.5
WP_002211947.1\|4002350_4003004_+	hypothetical protein	NA	NA	NA	NA
WP_002209743.1\|4003047_4004256_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

DBSCAN-SWA_10

4162795 : 4208113

Pseudomonas_phage(25.0%)

protease,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210815.1\|4162795_4163305_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_002210816.1\|4163339_4163597_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	4.0e-20	54.9
WP_002210817.1\|4163600_4164731_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	7.6e-172	78.6
WP_002210818.1\|4164893_4167182_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.1e-286	64.9
WP_002210820.1\|4167675_4168404_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_002210821.1\|4168665_4171341_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	4.0e-102	34.4
WP_002228028.1\|4171528_4174402_+	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	3.8e-42	28.3
WP_002210824.1\|4174469_4175123_-	transcriptional regulator RcsB	NA	NA	NA	NA
WP_002216094.1\|4175125_4175698_-	histidine phosphotransferase	NA	NA	NA	NA
WP_002216093.1\|4175865_4177818_-	phosphotransferase RcsD	NA	NA	NA	NA
WP_002210825.1\|4177841_4178996_-	MFS transporter	NA	NA	NA	NA
WP_002210826.1\|4180098_4181214_+	porin OmpC	Q1MVN1	Enterobacteria_phage	9.6e-111	57.6
WP_002228026.1\|4182644_4183811_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA
WP_002208870.1\|4184085_4185612_-	MFS transporter	NA	NA	NA	NA
WP_002208869.1\|4185988_4187017_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002208868.1\|4187090_4188878_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5
WP_002208867.1\|4189284_4190220_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA
WP_002264765.1\|4190391_4190628_-	DinI family protein	K7PKR6	Enterobacteria_phage	4.8e-20	63.8
WP_002208864.1\|4190833_4191556_-	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_002215470.1\|4191829_4192309_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_002208862.1\|4192519_4193824_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-90	46.0
WP_002208861.1\|4194532_4195345_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002208860.1\|4195320_4196115_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_002208859.1\|4196745_4197036_+	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_002208858.1\|4197081_4197699_+	ATP-binding protein	NA	NA	NA	NA
WP_002208857.1\|4197703_4197898_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-08	60.4
WP_002208856.1\|4197894_4199403_+\|tail	tail protein	B5TK67	Pseudomonas_phage	2.4e-104	44.2
WP_002208855.1\|4199424_4199793_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002208854.1\|4199794_4200094_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002208852.1\|4201973_4203380_+	hypothetical protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_002208850.1\|4203376_4204432_+\|tail	tail protein	M1PVV2	Vibrio_phage	1.3e-37	27.2
WP_002215460.1\|4204447_4205044_+\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_002208848.1\|4205040_4205496_+	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002208847.1\|4205499_4206636_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	4.5e-31	30.5
WP_002215458.1\|4206632_4206893_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_002208846.1\|4206889_4207237_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	6.4e-21	41.3
WP_002208845.1\|4207333_4208113_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	7.1e-52	52.4

DBSCAN-SWA_11

4294873 : 4349729

Planktothrix_phage(13.33%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210751.1\|4294873_4295692_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002210753.1\|4295908_4297399_-	molybdate ABC transporter ATP-binding protein ModF	A0A1M7XV31	Cedratvirus	2.8e-12	26.8
WP_002210754.1\|4297508_4298300_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA
WP_002217291.1\|4298565_4298718_+	multidrug efflux pump-associated protein, AcrZ family	NA	NA	NA	NA
WP_002210756.1\|4298952_4299732_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210757.1\|4299731_4300427_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_002210758.1\|4300420_4301500_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	1.4e-21	35.1
WP_002210759.1\|4301555_4302377_-	pyridoxal phosphatase	NA	NA	NA	NA
WP_002210760.1\|4302667_4303672_+	6-phosphogluconolactonase	NA	NA	NA	NA
WP_002220188.1\|4303856_4305137_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.4e-17	32.1
WP_002210762.1\|4305235_4306273_+	biotin synthase BioB	NA	NA	NA	NA
WP_002210763.1\|4306272_4307424_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_002210764.1\|4307407_4308211_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_002216554.1\|4308203_4308926_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_002210766.1\|4309077_4309788_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-13	25.3
WP_002220186.1\|4310877_4312893_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_002210768.1\|4313184_4313430_+	DNA-binding protein VF530	NA	NA	NA	NA
WP_002210769.1\|4313560_4314484_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	3.7e-23	27.8
WP_002210771.1\|4315015_4315996_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_002210772.1\|4316096_4316576_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_002210773.1\|4316572_4316818_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_002210774.1\|4316820_4317273_+	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_002210775.1\|4317415_4318126_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_002213775.1\|4318360_4318819_+\|transposase	IS200/IS605-like element IS1541B family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002220180.1\|4319046_4320750_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	9.4e-57	31.5
WP_002218281.1\|4320772_4322245_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_002218278.1\|4322302_4322899_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_002228035.1\|4323263_4325312_+\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	1.4e-19	28.5
WP_002214199.1\|4325543_4326437_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002214197.1\|4326474_4327323_-	DMT family transporter	NA	NA	NA	NA
WP_002214195.1\|4327668_4328532_+	xanthosine phosphorylase	Q5YBA4	Grouper_iridovirus	2.3e-51	40.7
WP_002213759.1\|4329460_4329919_+\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002220173.1\|4330724_4331198_-	zinc resistance sensor/chaperone ZraP	NA	NA	NA	NA
WP_002220171.1\|4331555_4333370_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	1.0e-16	28.4
WP_002220170.1\|4333356_4334721_+	sigma 54-interacting transcriptional regulator	Q6XM27	Feldmannia_irregularis_virus	1.3e-05	29.1
WP_002220169.1\|4335068_4336178_+	alkene reductase	NA	NA	NA	NA
WP_002220168.1\|4336178_4337090_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002220165.1\|4337644_4337872_+	N5,N10-methylene tetrahydromethanopterin reductase	NA	NA	NA	NA
WP_002220163.1\|4337882_4338209_+	EthD family reductase	NA	NA	NA	NA
WP_002220162.1\|4338247_4339354_-	ABC transporter permease	NA	NA	NA	NA
WP_002220159.1\|4339366_4340542_-	ABC transporter permease	NA	NA	NA	NA
WP_002220158.1\|4340546_4342289_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.3e-24	34.6
WP_002220156.1\|4342302_4343289_-	secretion protein HlyD	NA	NA	NA	NA
WP_002220154.1\|4343340_4344051_-	transcriptional regulator CecR	NA	NA	NA	NA
WP_002220152.1\|4344441_4345797_+	ATP-dependent RNA helicase RhlE	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.1e-55	35.6
WP_011566265.1\|4347010_4347211_+	hypothetical protein	NA	NA	NA	NA
WP_016256670.1\|4347244_4347571_+	hypothetical protein	NA	NA	NA	NA
WP_002228617.1\|4347711_4347948_+	hypothetical protein	NA	NA	NA	NA
WP_002223532.1\|4348031_4348346_+	hypothetical protein	NA	NA	NA	NA
WP_002209743.1\|4348520_4349729_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

Anti-CRISPR protein detection

Acr_ID: NZ_CP009906.1|WP_002211705.1|53117_53285_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP009906.1|WP_002211705.1|53117_53285_+|hypothetical-protein

53117_53285_+

55 aa aa

3098-63616

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP009906_2	Orphan	2.1\|1202158\|32\|NZ_CP009906\|CRISPRCasFinder	1202158-1202189	32	39453-39422
NZ_CP009906_2	Orphan	2.4\|1202159\|31\|NZ_CP009906\|CRT	1202159-1202189	31	39452-39422
NZ_CP009906_2	Orphan	2.7\|1202163\|31\|NZ_CP009906\|PILER-CR	1202163-1202193	31	39452-39422

1. spacer 2.1|1202158|32|NZ_CP009906|CRISPRCasFinder matches to NZ_CP009906 position: 39453-39422, mismatch: 0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

2. spacer 2.4|1202159|31|NZ_CP009906|CRT matches to NZ_CP009906 position: 39452-39422, mismatch: 0

ctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
ctgtacgcataccgccatcttgcatcagtct	Protospacer
*******************************

3. spacer 2.7|1202163|31|NZ_CP009906|PILER-CR matches to NZ_CP009906 position: 39452-39422, mismatch: 0

ctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
ctgtacgcataccgccatcttgcatcagtct	Protospacer
*******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009905

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009904

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009906

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information