CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP009936	Yersinia pestis Angola plasmid pPCP, complete sequence	0 crisprs	NA	0	0
NZ_CP009934	Yersinia pestis Angola plasmid pMT, complete sequence	0 crisprs	NA	0	1
NZ_CP009935	Yersinia pestis Angola chromosome, complete genome	4 crisprs	cas3,DEDDh,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas1	5	14
NZ_CP009937	Yersinia pestis Angola plasmid pCD, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009935_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009935_1

176633-176735

Orphan

Consensus_repeat	Method
TTACAACGCGCAATTTCTGTGTTTCGCGCACAGCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009935_1

>merge|NZ_CP009935|1|176633-176735|CRISPRCasFinder
TTACAACGCGCAATTTCTGTGTTTCGCGCACAGCAAAACCCCACGTTTTTGGCATGGGGTCATCATTACAACGCACAATTTCTGTGTTTCGCGCACAGCAAAA

>NZ_CP009935|1|1|176633-176735|CRISPRCasFinder
TTACAACGCGCAATTTCTGTGTTTCGCGCACAGCAAAA	CCCCACGTTTTTGGCATGGGGTCATCA
TTACAACGCACAATTTCTGTGTTTCGCGCACAGCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009935.1\|WP_002208744.1\|165360_165873_+\|transcriptional-repressor-MprA	unknown	unknown	gnl\|CDD\|182795
NZ_CP009935.1\|WP_002208745.1\|166256_167429_+\|multidrug-efflux-MFS-transporter-periplasmic-adaptor-subunit-EmrA	unknown	unknown	gnl\|CDD\|185090
NZ_CP009935.1\|WP_002208749.1\|171150_171900_+\|DTW-domain-containing-protein	unknown	unknown	gnl\|CDD\|225690
NZ_CP009935.1\|WP_002209465.1\|190758_191880_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|183035
NZ_CP009935.1\|WP_002208746.1\|167467_169003_+\|multidrug-efflux-MFS-transporter-permease-subunit-EmrB	unknown	unknown	gnl\|CDD\|129794
NZ_CP009935.1\|WP_002208743.1\|164847_165189_+\|L-valine-transporter-subunit-YgaH	unknown	unknown	gnl\|CDD\|182434
NZ_CP009935.1\|WP_002209468.1\|188061_188424_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|182378
NZ_CP009935.1\|WP_002228330.1\|189496_190654_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|182594
NZ_CP009935.1\|WP_002208751.1\|174760_176116_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|236510
NZ_CP009935.1\|WP_002217405.1\|182426_185000_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|182791
NZ_CP009935.1\|WP_002216643.1\|170543_170981_+\|thioredoxin-TrxC	unknown	unknown	gnl\|CDD\|182889
NZ_CP009935.1\|WP_002208752.1\|176177_176519_+\|YfiM-family-lipoprotein	unknown	unknown	gnl\|CDD\|182705
NZ_CP009935.1\|WP_002209469.1\|186975_187707_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|182792
NZ_CP009935.1\|WP_041854827.1\|188755_189214_-\|IS200/IS605-like-element-IS1541A-family-transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP009935.1\|WP_002220061.1\|181915_182101_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009935.1\|WP_002223249.1\|171942_174585_+\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
NZ_CP009935.1\|WP_012229947.1\|169125_170292_-\|tRNA/rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|236779
NZ_CP009935.1\|WP_002209471.1\|185129_185861_-\|polyphenol-oxidase	unknown	unknown	gnl\|CDD\|182677
NZ_CP009935.1\|WP_002228238.1\|191892_192963_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190
NZ_CP009935.1\|WP_002231132.1\|185862_186840_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020

Protein	Function_ID	Function_description	E-value
NZ_CP009935.1\|WP_002208744.1\|165360_165873_+\|transcriptional-repressor-MprA	gnl\|CDD\|182795	PRK10870, PRK10870, transcriptional repressor MprA; Provisional.	2.15273e-109
NZ_CP009935.1\|WP_002208745.1\|166256_167429_+\|multidrug-efflux-MFS-transporter-periplasmic-adaptor-subunit-EmrA	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	0
NZ_CP009935.1\|WP_002208749.1\|171150_171900_+\|DTW-domain-containing-protein	gnl\|CDD\|225690	COG3148, COG3148, Uncharacterized conserved protein [Function unknown].	1.34889e-124
NZ_CP009935.1\|WP_002209465.1\|190758_191880_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	0
NZ_CP009935.1\|WP_002208746.1\|167467_169003_+\|multidrug-efflux-MFS-transporter-permease-subunit-EmrB	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	0
NZ_CP009935.1\|WP_002208743.1\|164847_165189_+\|L-valine-transporter-subunit-YgaH	gnl\|CDD\|182434	PRK10408, PRK10408, L-valine transporter subunit YgaH.	1.37511e-59
NZ_CP009935.1\|WP_002209468.1\|188061_188424_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|182378	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA.	2.10049e-56
NZ_CP009935.1\|WP_002228330.1\|189496_190654_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|182594	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional.	0
NZ_CP009935.1\|WP_002208751.1\|174760_176116_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|236510	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase.	0
NZ_CP009935.1\|WP_002216643.1\|170543_170981_+\|thioredoxin-TrxC	gnl\|CDD\|182889	PRK10996, PRK10996, thioredoxin 2; Provisional.	1.74338e-103
NZ_CP009935.1\|WP_002208752.1\|176177_176519_+\|YfiM-family-lipoprotein	gnl\|CDD\|182705	PRK10759, PRK10759, YfiM family lipoprotein.	3.48862e-55
NZ_CP009935.1\|WP_002209469.1\|186975_187707_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|182792	PRK10866, PRK10866, outer membrane protein assembly factor BamD.	3.4139e-180
NZ_CP009935.1\|WP_041854827.1\|188755_189214_-\|IS200/IS605-like-element-IS1541A-family-transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.36021e-44
NZ_CP009935.1\|WP_002217405.1\|182426_185000_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|182791	PRK10865, PRK10865, ATP-dependent chaperone ClpB.	0
NZ_CP009935.1\|WP_002223249.1\|171942_174585_+\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	0
NZ_CP009935.1\|WP_012229947.1\|169125_170292_-\|tRNA/rRNA-methyltransferase	gnl\|CDD\|236779	PRK10864, PRK10864, putative methyltransferase; Provisional.	0
NZ_CP009935.1\|WP_002209471.1\|185129_185861_-\|polyphenol-oxidase	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	3.316e-179
NZ_CP009935.1\|WP_002228238.1\|191892_192963_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
NZ_CP009935.1\|WP_002231132.1\|185862_186840_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	0

>NZ_CP009935.1|WP_002208752.1|176177_176519_+|YfiM-family-lipoprotein
MRLHIYLRRLLIAPLLLLTSACTHVANDSWTGKDKAQHFFASAALAAAGTAYGEHQNWSDAKSRNFGLLFSIGIGAGKEWYDSRQAGTGWSWKDFTWDIAGAITGYSLYRAAN
>NZ_CP009935.1|WP_002208751.1|174760_176116_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MLSKFKRSKHQQHLAQLPKLPQSVDDVQTLYCPKVFRSTLLELIAQATKRIFLVALYLEQDDAGRDVMNALYQAKQSHPELEIYVLVDWHRAQRGRIGAAAVNTNADWYCDMAAKHPNISVPVYGVPVNTREALGVLHLKGFIIDDTVIYSGASINDVYLYQNDKYRYDRYQLITNPSLATIMVDYVKQRILSAGAVQRLDRNDRPTTPEIKNETRQFRSSLRDASYQFSAQAHNDELAVTPLVGLGKKSLLNKTIHHLMASADERLTICTPYFNLPALLVRNIIYLLREGKQVEIIVGDKTANDFYIPEDQPFKIIGALPYLYEINLRRFLSRLQPYVDNGQLIVRLWKDGDNTYHLKGMWVDNNWQLITGNNLNPRAWRLDLENAILIHDPKHEMHEQRAKELECIRTHTKVVSHYLELENIQQYPVKVRKLIRRLRRIRIDRLISRIL
>NZ_CP009935.1|WP_002223249.1|171942_174585_+|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase
MSQRGLEALLRPKSIAVIGASEKPERAGFLMMRNLLDGGFNGPILPVTPNHKAVCGVLAYANIASLPITPDLAILCTHDCRNLTLLEDLGNRGCKAAIILSAAPEQFPELKACAQRHHMRLLGPNSLGLLAPWQGLNASFSPVPIKKGRLAFISQSAAVANTILDWAQQREVGFSYFIALGDSLDIDVDDLLDFLARDSKTSAIMLYIEHISDARRFLSASRSASRNKPVLVVKSGRSQRAQQLLNGQQGLDAAYDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGERLLIVSNGSAPAAMALDELIRRNGKLATLSDATQSALSEALPPFVALRNPIDLRDDASAERYLAALKPLLDSSDYDTLLLIHSPSAAAPGGKTAELLISAIRQHPRGKRITLLTNWCGEYSSQDARRLFTEAGIPTYRTPEGAITAFMHMVEYRRNQKQLKETPALPIGLTANTAHVHQLIRQALAEGATQLDTHEVQPILEAYGLRTLPTWIASDSVEAVHIAERLGYPVAIKLRSPDIPHKSEVQGVMLYLRTAIEVQRAADDILDRVKRTYPQARIHGLLVQSMANRAGAQELRIAVEQDAIFGPLIMLGEGGIEWHHETQAAVALPPLNMVLARYLIIQAVKGGKIRSRGSLQPLDIPGLSRLLVQVSNLILDCPEITRLDIHPVLASGSEFTLLDVSMQLAPVTGDPQARLAIRPYPHELEEKVTLRDNSQCLFRPILPEDEPLLKLFIDQVTKEDLYYRYFSEINEFSHDDLANMTQIDYDREMAFVAVRQNSEGPEIIGVTRAFSDPDNIDAEFAVLVRSDLKGLGLGRALLEKMIRYARSHGLSRLTAVTMPNNRGMIGLAQKLGFTIDVQIEDGIVNLELTL
>NZ_CP009935.1|WP_002208749.1|171150_171900_+|DTW-domain-containing-protein
MTDTFTTGHTLPTAITTENAVLRLRQQRLAAATRAYRARGCRAIRCQSCLLAERFCLCDTIKPQQANSRFCLIMFDTEPLKPSNTGRLIADILPDTHAFLWARTEVDPELLAAISDPLRQPYVVFPEAYAEPERQVINQLPISDKPPLFILLDGTWTEAKKMFRKSPYLAGLPLLSLQVSHLSDYQLREAQRPEQHCTVEVATALLHQAGDIQAAEGLRDHFHYFRQQYLAGKPHHPVGRVTASHEENA
>NZ_CP009935.1|WP_002216643.1|170543_170981_+|thioredoxin-TrxC
MNTVCTACMATNRLPEERIDDGAKCGRCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRDPNS
>NZ_CP009935.1|WP_012229947.1|169125_170292_-|tRNA/rRNA-methyltransferase
MNDSFSGKNGKVKVMYVRSDESSDDRNSSNHDNRNNSSRDNSNRDNNGRGRSQRPAGNGRPGDNARQGDNTRQGNAPRNNDSRRPDSGRNERDRPSRPARSEGSSPYDSPWKTVSRAPSEEPEFDHGGISGKSHIDPAQLRRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEEDELAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG
>NZ_CP009935.1|WP_002208746.1|167467_169003_+|multidrug-efflux-MFS-transporter-permease-subunit-EmrB
MAQKPLEGAPLAWMTVALSLATFMQVLDSTIANVAIPTIAGDLGSSNSQGTWVITSFGVANAISIPVTGWLAKRVGEVRLFLWSTGLFVLASWLCGMSNSLGMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKRSMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLVVVLLAGSTLKGRETKTEIRPIDTIGLVLLVVGIGALQIMLDQGKELDWFNSTEIIVLTVVAVVAITFLIVWELTDDHPVIDLSLFKSRNFTIGCLCLSLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGILPVLLSPLIGRFAHRIDMRQLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFFQGFAIACFFMPLTTITLSGLPPERMAAASSLSNFMRTLAGSIGTSITTTLWTQRESLHHAQLTEFVNPYNPNATQAYQELEKLGMSQQQASAYLAREITNQGLIISANEIFWLSAGVFLMLLALIWFARPPFTSGGGGGGAH
>NZ_CP009935.1|WP_002208745.1|166256_167429_+|multidrug-efflux-MFS-transporter-periplasmic-adaptor-subunit-EmrA
MSESAGAQAPQRPQNKKQQRKRVLLLLTAIFIMIGVAYLIYWFLVLRHHQETDNAYISGNQVQIMSQVPGSVVSVHFENTDFVKSGDVLVTLDPTDAEQAFEQAKTALANSVRQTHQLIINSKQYQANIALKKTELSQAQNDLKRRVVLGAAAVIGREELQHARDAVEAAQASLDMAVQQYNANQALVLNTPLEKQPAIEQAAAKMRDAWLTLQRTKVVSPISGYVSRRSVQVGAEISSGTPLMAVVPADQLWIDANFKETQLANMRIGQPATIVTDFYGDDVVYQGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIALDEKQLKEHPLRIGLSSLVKVDTANTDGHVLAQNVRKEPAFMTNALSLDFAPVNQIISDIIHANAD
>NZ_CP009935.1|WP_002208744.1|165360_165873_+|transcriptional-repressor-MprA
MESSFSPIEQMLNSRAKRQKDFPYQEILLTRLSMHMHSKLLENRNKMLKAQGINETLFMALITLDAQESRSIQPSELSAALGSSRTNATRIADELEKKGWIERRESHNDRRCLHLHLTEAGIEFLHQLLPPQHKCLHFLWSTLTEQEQQQLEMLTRKLLTRLDQMEISEQ
>NZ_CP009935.1|WP_002208743.1|164847_165189_+|L-valine-transporter-subunit-YgaH
MNTDILMIGLVVGTVNYLFRYLPLRFGPARKQTGLLRGKMSLLLDSIGIASICALLVVSSTPEIIHHPQKLLPTLIGFLVICGCFYKTNSIIFATLLGALCYGLTFKLLTILG
>NZ_CP009935.1|WP_002220061.1|181915_182101_+|hypothetical-protein
MFDLLTFTCVKAAVLKDYFLQIGILTGVKMFTALVTLQDLILFLPAETGVDIVLRVPTQIV
>NZ_CP009935.1|WP_002217405.1|182426_185000_-|ATP-dependent-chaperone-ClpB
MRLDRLTSKFQLALADAQSLALGRDNQFIEPLHLMSALLNQDGGTVRPLLTSAGINVARLRSDIEQALGRLPQVEGTGGDVQPSNELVRVLNLCDKLAQKRSDKFISSELFVLAVLEDRGTLTDMLKAAGATVAIIDKAIETMRGGDKVDDQGAEDQRQALKKFTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKHKRVLSLDMGSLIAGAKYRGEFEERLKGVLNDLSKQEGSVILFIDELHTMVGAGKGDGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVYVAEPTVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAGSSIRMQMDSKPESLDRLERRIIQLKLEQQALKKESDDASKKRLEMLNTELEQKEREYSELEEEWKAEKASLTGTQNIKTELEQAKITLEQARRVGDLARMSELQYGTIPELEKQLAAATALEGKTMKLLRNRVTEIEVAEVLARWTGIPVSRMLESERDKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALATFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQEHFGQMNYSEMKTVVMDVVSHHFRPEFINRIDEVVVFHPLGRAHLASIANIQLERLYKRLEERGYEVKITQPALEFLGEAGFDPVYGARPLKRAIQQEIENPLAQQILSGKLIPGIPVTLDVENGHIIAKQ
>NZ_CP009935.1|WP_002209471.1|185129_185861_-|polyphenol-oxidase
MSTLILPDWPMPARVRACSTTRHGGVSVSPYDSLNLGTHVGDVATHVDANRQLLREQACLPQMPVWLDQVHGTRVLTLEGRSVSNTQADAVYSRVVGQVCAVMTADCLPVLFCSLAGDEVAAAHAGWRGLCSGVLEHTVAQFNAAPSSLMAWLGPAIGPQQFEVGEDVKQAFISIDAKSALAFTPFGSKYLADIYLLARLRLQAAGIQAIYGGNRCTVTEKQQFFSYRRDGITGRMASLIWLI
>NZ_CP009935.1|WP_002231132.1|185862_186840_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MAQQVQLSATVAESQLGQRLDQALAELFPDYSRSRIKEWILDSRVTVNGKKINKPKEKVLGGELVAIDAQIEEDARWAPQEIPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPEIMDVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAVHPMGKPATTHYRIMEHFRAHTRLRLRLETGRTHQIRVHMSHINHPLVGDQLYGGRPRPPKGASDSFIAILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELINALKADTEEFKDQMDW
>NZ_CP009935.1|WP_002209469.1|186975_187707_+|outer-membrane-protein-assembly-factor-BamD
MTRMKYLVAAATLSLVLTGCSSNKDVVPDNPPSELYATAQQKLQDGNFKGAITQLEALDNRYPFGPYSQQVQLDLIYAYYKSADLPMAQASIDRFMRLNPTHPNIDYVLYMRGLTDMALDDSALQGFFGIDRSDRDPQHARAAFRDFNQLIQNYPNSQYATDAQKRLVFLKDRLAKYELAVAQYYTKRGAYVAVVNRVDQMMRDYPDTQATRDALPLMENAYKQLQLNAQADKVAKIIAANPA
>NZ_CP009935.1|WP_002209468.1|188061_188424_+|ribosome-associated-translation-inhibitor-RaiA
MTVNITSKQMDITPAIRKHVEDRLTKLDKWQAQLINPHIVLSKEPQGFVADASISTPMGPLVASAKHDDMYAAINELITKLERQLNKVQHKGEARRAASSVKDANLESVDEEETESEPEQ
>NZ_CP009935.1|WP_041854827.1|188755_189214_-|IS200/IS605-like-element-IS1541A-family-transposase
MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAEYCVDHIHMLLEIPLKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK
>NZ_CP009935.1|WP_002228330.1|189496_190654_+|bifunctional-chorismate-mutase/prephenate-dehydratase
MTDNPLLVLRERISALDLKLLALLAERRELAVDVAKAKQLHHRPIRDKERERDLLDALIDAAKPYNLDGFYVTRLFQLIIEDSVLTQQALLQHQLNQTALLSARIAFLGPKGSYSHLAARQYAARHFEQLIECGCLKFQDIFTQVETGQADYAVLPIENTSSGSINDVYDLLQHTSLSIVGEITNPIEHCVLIATETDLNKIETVYSHPQPFQQCSQFINRFPHWKIEYCESTAAAMEKVAGMKSPTAAALGSEAGGALYNLQVLEHNLANQQQNITRFIVLARKPIDVSEQIPAKTTLIMATGQQSGALVEALLVLREHGIIMTKLESRPINGNPWEEMFYIDVQANIRSEAMQKALADLTPITRSLKVLGCYPSENVVPVEPR
>NZ_CP009935.1|WP_002209465.1|190758_191880_-|bifunctional-chorismate-mutase/prephenate-dehydrogenase
MVAELTALRDQIDEVDKALLDLLAKRLHLVAEVGEVKSRYGLPIYVPDREAAMLASRRQEAGALGVPPDLIEDVLRRVMRESYTSENDKGFKTLCPELRPVVIIGGQGQMGRLFSRMLNLSGYQVRTLEQEDWSQAESILADAGMVIVSVPIHITEEVINRLPKLPADCILLDLASVKNKPLQAMLAAHEGPVLGLHPMFGPDVGSLAKQVVVYCDGRDPQAYQWLLEQLQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSEDNLALIKRYYKRFGEALTLLEHHDKQAFVQSFEKVEHWFGDYAERFLVESRSLLRQANDNRQ
>NZ_CP009935.1|WP_002228238.1|191892_192963_-|3-deoxy-7-phosphoheptulonate-synthase
MQKDSLNNVHISAEQILITPEELKNQFPLSENDQYSIERARKTIADIIQGRDPRLLVVCGPCSIHDVDAALDYARRLKKLSVELDDSLYIVMRVYFEKPRTTVGWKGLINDPAMDGSFDVEAGLHIARRLLLDLVGMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFKNGTDGSLGTAINAMRAAAMPHRFMGINQSGQVCLLQTQGNPHGHVILRGGKTPNYSAQDVAQCEKQMQDAGLIPSLMIDCSHGNSNKDYRRQVAVAESVVEQIKAGNRSITGVMLESHIHEGNQSSEQPRADMRYGVSVTDACINWESTETLLRGMRQELLAALTARTA

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Crispr_ID: NZ_CP009935_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009935_2

636280-636391

Orphan

Consensus_repeat	Method
AAAGCACATTTGAGCAGCGAGTGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009935_2

>merge|NZ_CP009935|2|636280-636391|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAGCCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCCAAAGCACATTTGAGCAGCCGAGTGAA

>NZ_CP009935|2|2|636280-636391|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAG	CCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCC
AAAGCACATTTGAGCAGCCGAGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009935.1\|WP_100067904.1\|636600_637955_+\|IS3-like-element-IS1661-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP009935.1\|WP_002212093.1\|643506_644418_-\|maltose-operon-protein-MalM	unknown	unknown	gnl\|CDD\|236716
NZ_CP009935.1\|WP_002209491.1\|633223_635860_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP009935.1\|WP_002212091.1\|646000_647110_-\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	unknown	unknown	gnl\|CDD\|182893
NZ_CP009935.1\|WP_002209484.1\|624033_624651_-\|hemophore-HasA	unknown	unknown	gnl\|CDD\|368907
NZ_CP009935.1\|WP_002212095.1\|642757_643036_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009935.1\|WP_002223919.1\|631686_632850_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NZ_CP009935.1\|WP_012230143.1\|622059_623868_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP009935.1\|WP_002212097.1\|642087_642606_+\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NZ_CP009935.1\|WP_002221973.1\|647113_647350_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009935.1\|WP_002209485.1\|624872_627365_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP009935.1\|WP_002230616.1\|639517_640999_-\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|226048
NZ_CP009935.1\|WP_002212100.1\|639070_639511_-\|type-VI-secretion-system-baseplate-subunit-TssE	unknown	unknown	gnl\|CDD\|226049
NZ_CP009935.1\|WP_002209488.1\|629503_630277_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NZ_CP009935.1\|WP_002209489.1\|630431_631436_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP009935.1\|WP_002209481.1\|619787_620591_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP009935.1\|WP_002209487.1\|627963_629337_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NZ_CP009935.1\|WP_002212098.1\|641066_641564_-\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|226047
NZ_CP009935.1\|WP_002212092.1\|644658_645930_-\|maltoporin	unknown	unknown	gnl\|CDD\|236481
NZ_CP009935.1\|WP_002209482.1\|620655_621984_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902

Protein	Function_ID	Function_description	E-value
NZ_CP009935.1\|WP_100067904.1\|636600_637955_+\|IS3-like-element-IS1661-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.01643e-48
NZ_CP009935.1\|WP_002212093.1\|643506_644418_-\|maltose-operon-protein-MalM	gnl\|CDD\|236716	PRK10564, PRK10564, maltose operon protein MalM.	5.256e-172
NZ_CP009935.1\|WP_002209491.1\|633223_635860_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP009935.1\|WP_002212091.1\|646000_647110_-\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	gnl\|CDD\|182893	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK.	0
NZ_CP009935.1\|WP_002209484.1\|624033_624651_-\|hemophore-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	9.51098e-102
NZ_CP009935.1\|WP_002223919.1\|631686_632850_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NZ_CP009935.1\|WP_012230143.1\|622059_623868_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP009935.1\|WP_002212097.1\|642087_642606_+\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	1.15477e-84
NZ_CP009935.1\|WP_002209485.1\|624872_627365_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	8.20794e-132
NZ_CP009935.1\|WP_002230616.1\|639517_640999_-\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|226048	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP009935.1\|WP_002212100.1\|639070_639511_-\|type-VI-secretion-system-baseplate-subunit-TssE	gnl\|CDD\|226049	COG3518, COG3518, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	6.737e-48
NZ_CP009935.1\|WP_002209488.1\|629503_630277_-\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.92616e-136
NZ_CP009935.1\|WP_002209489.1\|630431_631436_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP009935.1\|WP_002209481.1\|619787_620591_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.51188e-39
NZ_CP009935.1\|WP_002209487.1\|627963_629337_-\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NZ_CP009935.1\|WP_002212098.1\|641066_641564_-\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|226047	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	6.35023e-71
NZ_CP009935.1\|WP_002212092.1\|644658_645930_-\|maltoporin	gnl\|CDD\|236481	PRK09360, lamB, maltoporin LamB.	0
NZ_CP009935.1\|WP_002209482.1\|620655_621984_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.16318e-105

>NZ_CP009935.1|WP_002209491.1|633223_635860_+|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NZ_CP009935.1|WP_002223919.1|631686_632850_+|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NZ_CP009935.1|WP_002209489.1|630431_631436_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSDLHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVTHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NZ_CP009935.1|WP_002209488.1|629503_630277_-|acetylglutamate-kinase
MNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NZ_CP009935.1|WP_002209487.1|627963_629337_-|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NZ_CP009935.1|WP_002209485.1|624872_627365_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQGYSGQLAANTAETPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRCEQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NZ_CP009935.1|WP_002209484.1|624033_624651_-|hemophore-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVVDCHDMLLAA
>NZ_CP009935.1|WP_012230143.1|622059_623868_-|type-I-secretion-system-permease/ATPase
MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPTFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPETKILNSRSGWSNGVSYGIGPARTTSSPKP
>NZ_CP009935.1|WP_002209482.1|620655_621984_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESVCYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGHIAKNKLLEMESQSTSLQARVEQSTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NZ_CP009935.1|WP_002209481.1|619787_620591_-|energy-transducer-TonB
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK
>NZ_CP009935.1|WP_100067904.1|636600_637955_+|IS3-like-element-IS1661-family-transposase
MKHPFSTRLAAVQHYLSGKATLRETARQFSVGKSPLTRWIRAFRRQGEAGLEHHLSRTYTPEFRLCVVRYMMANRCSAADASAHFNIPNETIIQNWMKRYREGGKEALNPSKTGPTMPKDKYEHDSKPFSEMTHAELEKELEYLRAENAYPKKAESPERRKGTQGAAEKTRIVQALTAEHRLSCLLCAAKLARSTYYYHASKPDGVIDDYADAVKAIGALSRRHAQRYGYRRMTVALRKEGFTLNHKTVRKLMNQHGLLSLIRRKKYRSYRADGGRASDNLLARNFTSEISGLKWCTDVTEFRVGAQKLYLSVIQDLFNNEIISWHMSERAALILTCKTLEKALKVKGRKEGLMLHSDQGWHYRTPMWRSMLVEAGIRQSMSRKGNCLDNAVMENFFSHLKAEMYHRKKYDSATVLKRDIVEYIHYYNTERISLKTGGMSPAEYRTQVEKQ
>NZ_CP009935.1|WP_002212100.1|639070_639511_-|type-VI-secretion-system-baseplate-subunit-TssE
MAALLNWDRGSSASLFDRIQGKGASSSSDGRLRELLNSIQKHLNEVLNSRPGACQSAVDLGVIDLNDATATSSDFRKSIEKAIKDCIENYEPRISAVTVQSLLNHGDPLQLSFHISARVNFDDMGDVVEFNIQLDNNRRYCFNQET
>NZ_CP009935.1|WP_002230616.1|639517_640999_-|type-VI-secretion-system-contractile-sheath-large-subunit
MPLHEENTVLAAEPASATFLLDEIMSQTRMAPGNDGYDIAKQGVAAFISSILDTGTNEEPINKLLVDRMIIELDKKLSAQMDEILHANEFREIESSWRSLKLLVDRTDFRENIKINIMHATKEELLEDFEFSPEIIQSGFYKHVYSSGYGQFGGEPTAAIIGNYAFNNSSPDMKLLQYVSAVGAMAHAPFLSSVAPDFFGISSFTELPAIKDLKSVFEGPAHTKWRALRESEDSRYLGLTTPRFLLRLPYSTVENPIKNFNYYEDVSRNHEHFLWGNTAFLLASCLTDSFAKYRWCPNIIGPQSGGTVHDLPVHLYEAMGQIQAKIPTEVLITDRREFELAEEGFITLTMRKGSDNAAFFSANSVQKPKVFPNTREGKMAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNIWLKQYIADQENPPTDVRSRRPLRSAQIQVLDVEGDPGWYQVAMQVRPHFKYMGASFELSLVGRLDKE
>NZ_CP009935.1|WP_002212098.1|641066_641564_-|type-VI-secretion-system-contractile-sheath-small-subunit
MSKNKQSSVAPKERINIKYVPNTGDQVAEIELPLNLLVVGDLKGVREETSIEERQVVSVNKNNFNSVMNEANISLSFNVPNRLEGDGEEDMPVALSIKGLDDFSPDNVAKKVPELKKILELREALVALKGPLGNIPAFRSRLQDLLGNEDMREQLLKELDILNQK
>NZ_CP009935.1|WP_002212097.1|642087_642606_+|Hcp-family-type-VI-secretion-system-effector
MPTPAYISITGKTQGNITAGAFTAESVGNIYVQGHEDEMLVQEFEHIVTVPTDPQSGQPSGQRAHKPLRFTVAYNKAVPLLYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIIDIDCKMPHCQDSTKAEFTQLVRVSLAYRKINWDHTTAGTSGADDWRAPIEA
>NZ_CP009935.1|WP_002212095.1|642757_643036_-|hypothetical-protein
MNFPNLLLLFSDGTLIKQVERELKTHLICNEFVKNKSKIVTVYITLGNDALLLIYYSNRVFYKKSYIKCGDIACMNYTVNEGYLTTEIILWR
>NZ_CP009935.1|WP_002212093.1|643506_644418_-|maltose-operon-protein-MalM
MKKNLLSLCLVLALGGTAPLAVQAASTISPANVSIAPTISTTTLQQLPWQPLVPPVTQDIQLTAGSPHISQGEVEGAVAAFALPADRGSLEVTLSSLLTDKQLFTPSVLVLDEQMRPAAYYPSSYFTYEKAGIMINDRLQGVMKLTPALGQKQIYLLVYTTRDDLKKTTQLLDPAKAYAQGVGNAVPDIPDPIVNHSPTGTLRIKVTSEQGMGNIMIGLIQSAPTSAPVVVGSSIQPVAAPQSEPAKPAAPMLGETENYFNQAIKDAVKAGDVDKALKLLNEAEHLGSTSARKTFIGSVKGKG
>NZ_CP009935.1|WP_002212092.1|644658_645930_-|maltoporin
MITLRKLPIALAVAAGVLSTQAMAVDFHGYARSGIGWTASGGEQQCFQTTGAQSKYRLGNECETYAELKLGQELWKEGDKSFYLDTNVAYSVSQRDDWESTDPAFREANVQGKNLIESLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLETIDLGFGKLSVAATRNSESGGSSAWIDNQRENAKYTINNVYDVRLAGLETNPGGSLELGVDYGRADTQEGYSLAPNASKDGVMLTAEHTQSLMGGFNKFVVQYATDSMTSYNTGHSQGTSVNNNGHLLRVIDHGAINLAEKWDMMYVALYQDIDLDNNNGNTWYSVGVRPMYKWTPIMSTLLEAGYDNVKSQHTGERNGQYKLTLAQQWQAGDSIWSRPAIRVFATYANWDEKWGYSDTTGVAQDGTIGTNSRGKNNEVTFGAQFEAWW
>NZ_CP009935.1|WP_002212091.1|646000_647110_-|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK
MANVTLSSVYKAFGEAVISRDINLEIDDGEFVVFVGPSGCGKSTLLRMIAGLEDITSGELLIGGKRMNEVPPSERGIGMVFQSYALYPHLSVAENMSFGLKLAGVKKAEIYQRVNQVAEVLQLAHLLDRRPKALSGGQRQRVAIGRTLVSEPDVFLLDEPLSNLDAALRVQMRIEISRLHKRLERTMIYVTHDQVEAMTLADKIVVLDAGNIAQVGKPLELYHYPANRFVAGFIGSPKMNFLPVKVTAAEPRQVQIELPNHQRVWLPVEGDQVQVGANMSLGIRPEHLLPSSASEVTLEGEIQVVEQLGNETQIHIQIPAIRQNLVYRQNDVVLVEEGATFSIGLPPHRCHLFREDGTACKRLYQELGV
>NZ_CP009935.1|WP_002221973.1|647113_647350_-|hypothetical-protein
MRLIITLLDQYVEALFNVQPYTQAATPSGATLPLAWRHGAQRESHQGTGGNQWVMPGFASTVFLHSDSYEKLFAQAKE

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Crispr_ID: NZ_CP009935_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009935_3

2778496-2778760

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

4 spacers

cas1,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP009935_3

>merge|NZ_CP009935|3|2778496-2778760|CRISPRCasFinder,CRT,PILER-CR
TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCTGCCTGTGCAGCAGTGAACATTATCTGAATGGCATTTTCTTTGGCGCAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGCCATTCCGTGAACCTGAGCGCGTTCGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACTCGTCAATGAATTGCGGGACGTTCCGGCGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009935|3|3|2778496-2778760|CRISPRCasFinder
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGTCAATGAATTGCGGGACGTTCCGGCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009935|3|1|2778496-2778760|CRT
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGTCAATGAATTGCGGGACGTTCCGGCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009935|3|1|2778556-2778760|PILER-CR
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGTCAATGAATTGCGGGACGTTCCGGCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009935.1\|WP_002216551.1\|2766234_2766444_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009935.1\|WP_002210191.1\|2777155_2778136_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP009935.1\|WP_002211861.1\|2765193_2766120_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP009935.1\|WP_002210197.1\|2785624_2786449_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009935.1\|WP_002211868.1\|2771170_2772121_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP009935.1\|WP_002230953.1\|2782219_2783335_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009935.1\|WP_002211866.1\|2769583_2770138_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP009935.1\|WP_002210200.1\|2788948_2789989_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NZ_CP009935.1\|WP_002213840.1\|2783457_2784396_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NZ_CP009935.1\|WP_002211865.1\|2768486_2769506_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NZ_CP009935.1\|WP_002210196.1\|2784422_2785478_-\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NZ_CP009935.1\|WP_002211864.1\|2767972_2768476_+\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NZ_CP009935.1\|WP_012229482.1\|2772117_2773464_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP009935.1\|WP_012229483.1\|2786449_2787325_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009935.1\|WP_002211867.1\|2770148_2771153_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP009935.1\|WP_002210193.1\|2780906_2782181_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009935.1\|WP_012229481.1\|2766567_2767926_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP009935.1\|WP_002210192.1\|2779097_2780342_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NZ_CP009935.1\|WP_002210202.1\|2791493_2792573_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP009935.1\|WP_002210201.1\|2790005_2791394_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312

Protein	Function_ID	Function_description	E-value
NZ_CP009935.1\|WP_002210191.1\|2777155_2778136_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP009935.1\|WP_002211861.1\|2765193_2766120_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	3.26573e-51
NZ_CP009935.1\|WP_002210197.1\|2785624_2786449_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NZ_CP009935.1\|WP_002211868.1\|2771170_2772121_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	1.12008e-157
NZ_CP009935.1\|WP_002213840.1\|2783457_2784396_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	6.29599e-176
NZ_CP009935.1\|WP_002211866.1\|2769583_2770138_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NZ_CP009935.1\|WP_002210200.1\|2788948_2789989_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NZ_CP009935.1\|WP_002211865.1\|2768486_2769506_+\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	6.34333e-143
NZ_CP009935.1\|WP_002210196.1\|2784422_2785478_-\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	9.75278e-165
NZ_CP009935.1\|WP_002211864.1\|2767972_2768476_+\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	1.50048e-90
NZ_CP009935.1\|WP_012229482.1\|2772117_2773464_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NZ_CP009935.1\|WP_012229483.1\|2786449_2787325_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	6.91357e-58
NZ_CP009935.1\|WP_002211867.1\|2770148_2771153_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP009935.1\|WP_012229481.1\|2766567_2767926_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.37807e-50
NZ_CP009935.1\|WP_002210192.1\|2779097_2780342_+\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.65074e-32
NZ_CP009935.1\|WP_002210202.1\|2791493_2792573_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	2.93026e-166
NZ_CP009935.1\|WP_002210201.1\|2790005_2791394_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0

>NZ_CP009935.1|WP_002210191.1|2777155_2778136_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILTRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NZ_CP009935.1|WP_012229482.1|2772117_2773464_-|type-I-F-CRISPR-associated-protein-Csy1
MSDEGLAAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRQELIARYEVRNWLTDAANRAGQIKLATHAPKYTHSDSKSSGILNIELQSKKKDYFSSVDLAEQASDVIGNAAVFDLVKLLQSECEGGSLIKCLEQGDNSVLKLFSNDDELVEEWTTKFKSILNNEKFTSHKLAKQFYFPVGPDQYHLLSPLFSSSLAQAMHQRIIEARFSDQSKEAKAAHKAGRWHPTVRVLYLDTAVQHIGGTKPQNISYLNSVRGGKVWLLPCGAPSWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQLYLLGVKPLRNTMDIRAARLACCDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPTRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETSS
>NZ_CP009935.1|WP_002211868.1|2771170_2772121_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHYQQVHAYLSGWDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEVATRRLLCRLLPGFALLDRSELLAEHLNRLRQTNPQAEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NZ_CP009935.1|WP_002211867.1|2770148_2771153_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPAKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NZ_CP009935.1|WP_002211866.1|2769583_2770138_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NZ_CP009935.1|WP_002211865.1|2768486_2769506_+|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEEHFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NZ_CP009935.1|WP_002211864.1|2767972_2768476_+|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHYPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NZ_CP009935.1|WP_012229481.1|2766567_2767926_+|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYTVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NZ_CP009935.1|WP_002216551.1|2766234_2766444_-|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK
>NZ_CP009935.1|WP_002211861.1|2765193_2766120_-|LysR-family-transcriptional-regulator
MRKLPSLRMLRVFEEACHTLSFSKAAEALFMTQSAASRQIKQLENFLGKSLFIRGHRGLELTQDEMTMLPIVRQSLDLLEEGVKHVQLSNPLQHLRLQVAPTFATRWLAPRLVTLLQRNSQLQIALISEIRQKYCDFDSAIRFGDIRRDLSNGHLLCYEQLCLVASPLVMQQGRFPPLTALPQLHILNGDSRLTNWQQWLDAAQITVAAGHNALEFSTQDQVISACTTGAGYAVLDILMISHELDNGLLRQVLPLTVTSTHGYWLEIPQDKGHSPRVIIFQEWLQRELKRDIAKRYSKGEAKPLPAVL
>NZ_CP009935.1|WP_002210192.1|2779097_2780342_+|mechanosensitive-ion-channel
MQQRISQWLERLGMEFSDVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NZ_CP009935.1|WP_002210193.1|2780906_2782181_-|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NZ_CP009935.1|WP_002230953.1|2782219_2783335_-|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHAGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NZ_CP009935.1|WP_002213840.1|2783457_2784396_-|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFSEQQGQWAPVENAPTFQLQDPFFTRIEDELILGGVEINPHPDNPRQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTKNYTPIKIIAARDNFLPGATKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NZ_CP009935.1|WP_002210196.1|2784422_2785478_-|glycosidase
MMRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NZ_CP009935.1|WP_002210197.1|2785624_2786449_-|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NZ_CP009935.1|WP_012229483.1|2786449_2787325_-|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFILLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFISSFLFAFGLQKLKHGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NZ_CP009935.1|WP_002210200.1|2788948_2789989_+|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NZ_CP009935.1|WP_002210201.1|2790005_2791394_+|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK
>NZ_CP009935.1|WP_002210202.1|2791493_2792573_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MASVSLANVVKYYGKIKTIDNVNLEIASREFIVLVGPSGCGKSTLLRMIAGLEDVNSGEIKIEDKDVTQTNAGARGVSMVFQSYALYPHMTVRENLAFGLKNIKIPKQEIADRIANASNILQLDNYLERLPQHLSGGQRQRVAIGRSIVSRSKVFLFDEPLSNLDAALRIQMRQEIGKLHERLGKTTIYVTHDQTEAMTLADRIVILNQGRIEQIGTPEEVYNHPANLFVAGFIGAPKINLFNAVYEQDGYVNINGLRFFIPRLVNLDLAMGAVLTLAIRPEHFSLTNSTELSLAVKTDITEMHGDSTVVLFSSTEHGTLQMKVPYQLKLSVGEDVTIGASCEHILVFDEHGQAIHGES

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Crispr_ID: NZ_CP009935_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009935_4

4122938-4123059

Orphan

Consensus_repeat	Method
CTTAATGCCAATATTAATCGACATAATCAATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009935_4

>merge|NZ_CP009935|4|4122938-4123059|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTGTAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCTCTTAATGCCAATATTAATCGATATAATCAATTG

>NZ_CP009935|4|4|4122938-4123059|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTG	TAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCT
CTTAATGCCAATATTAATCGATATAATCAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009935.1\|WP_002213024.1\|4129156_4129945_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP009935.1\|WP_002210471.1\|4109945_4110437_-\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|226052
NZ_CP009935.1\|WP_002228570.1\|4130031_4130472_+\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NZ_CP009935.1\|WP_002213038.1\|4121938_4122685_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP009935.1\|WP_002213036.1\|4123415_4123634_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009935.1\|WP_002224087.1\|4112539_4114759_-\|DUF2169-domain-containing-protein	unknown	unknown	gnl\|CDD\|370755
NZ_CP009935.1\|WP_002213030.1\|4125695_4126433_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NZ_CP009935.1\|WP_002213017.1\|4130509_4130758_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851
NZ_CP009935.1\|WP_002213039.1\|4119367_4121785_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366708
NZ_CP009935.1\|WP_002210468.1\|4102998_4103352_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009935.1\|WP_012229833.1\|4106876_4108484_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|168775
NZ_CP009935.1\|WP_002213026.1\|4127680_4128400_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP009935.1\|WP_002214737.1\|4110429_4110795_-\|DUF4150-domain-containing-protein	unknown	unknown	gnl\|CDD\|372665
NZ_CP009935.1\|WP_002214739.1\|4111410_4112514_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP009935.1\|WP_041854810.1\|4126458_4127688_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NZ_CP009935.1\|WP_012229841.1\|4124410_4125694_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NZ_CP009935.1\|WP_012229846.1\|4128401_4129154_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235936
NZ_CP009935.1\|WP_001297096.1\|4117793_4118573_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP009935.1\|WP_002231245.1\|4123998_4124421_+\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP009935.1\|WP_002210473.1\|4110800_4111418_-\|DUF3540-domain-containing-protein	unknown	unknown	gnl\|CDD\|371873

Protein	Function_ID	Function_description	E-value
NZ_CP009935.1\|WP_002213024.1\|4129156_4129945_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.49415e-40
NZ_CP009935.1\|WP_002210471.1\|4109945_4110437_-\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|226052	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	8.63501e-49
NZ_CP009935.1\|WP_002213038.1\|4121938_4122685_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NZ_CP009935.1\|WP_002228570.1\|4130031_4130472_+\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NZ_CP009935.1\|WP_002224087.1\|4112539_4114759_-\|DUF2169-domain-containing-protein	gnl\|CDD\|370755	pfam09937, DUF2169, Uncharacterized protein conserved in bacteria (DUF2169). This domain, found in various hypothetical prokaryotic proteins, has no known function.	5.8582e-34
NZ_CP009935.1\|WP_002213030.1\|4125695_4126433_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.26541e-68
NZ_CP009935.1\|WP_002213017.1\|4130509_4130758_+\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09
NZ_CP009935.1\|WP_002213039.1\|4119367_4121785_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	1.41205e-31
NZ_CP009935.1\|WP_012229833.1\|4106876_4108484_-\|OmpA-family-protein	gnl\|CDD\|168775	PRK07034, PRK07034, hypothetical protein; Provisional.	0
NZ_CP009935.1\|WP_002213026.1\|4127680_4128400_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35
NZ_CP009935.1\|WP_002214737.1\|4110429_4110795_-\|DUF4150-domain-containing-protein	gnl\|CDD\|372665	pfam13665, DUF4150, Domain of unknown function (DUF4150).	1.30508e-14
NZ_CP009935.1\|WP_002214739.1\|4111410_4112514_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	6.90841e-22
NZ_CP009935.1\|WP_041854810.1\|4126458_4127688_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	4.44296e-140
NZ_CP009935.1\|WP_012229841.1\|4124410_4125694_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.55286e-134
NZ_CP009935.1\|WP_012229846.1\|4128401_4129154_+\|enoyl-CoA-hydratase	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	8.73637e-133
NZ_CP009935.1\|WP_001297096.1\|4117793_4118573_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.26232e-178
NZ_CP009935.1\|WP_002231245.1\|4123998_4124421_+\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	8.01872e-39
NZ_CP009935.1\|WP_002210473.1\|4110800_4111418_-\|DUF3540-domain-containing-protein	gnl\|CDD\|371873	pfam12059, DUF3540, Protein of unknown function (DUF3540). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 212 to 238 amino acids in length. This protein has a conserved SCL sequence motif.	8.74607e-21

>NZ_CP009935.1|WP_002213038.1|4121938_4122685_-|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NZ_CP009935.1|WP_002213039.1|4119367_4121785_-|GNAT-family-N-acetyltransferase
MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGLLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQLAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVKEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQPGANN
>NZ_CP009935.1|WP_001297096.1|4117793_4118573_+|AAA-family-ATPase
MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
>NZ_CP009935.1|WP_002224087.1|4112539_4114759_-|DUF2169-domain-containing-protein
MRIIRPQQLVVLKSSYQIGHESHMGISVVAGCYLSKPEHMVTESQIWQAWKAAPLSFRMLDSAEPKPFAEFLLAGHAGIGEEVTSLSAEVSVGSLTRRWCIEGESNKTGLVIKPFLRMSMDHTQSWGGKGCKENPLGRGYNDERKPTIMSLGLDGSAIVRSPLASPSPVPHDFQLRKVHINEVASTMTDPQYLETFYPGLPPQIDRRYFQMAPPGQWLKKSAWPDSVPFKLIGFRPDNEEISGAFPAVSARAFVWDNPSAPPSEVTLLRKTLWLLPDNDMGLMVFTGSVPLTHLFDEPIDTLLVGLDDSHSLRELEYYQQVYKSRSVEGAASFEFLKDPELMPEGMPLNVIRDLADHPDSLRYSASAMSEAESERFYQDVQDAIDRQEQQKSEEQETLGDLNVPAAGKEEAGTQWLESKEDTATNVTFLGTDFSGMTLDNKQFRYCMFTGCHFDKATFKDCTFEHCQFTQSDFENSRWNNVHLSGCLFKQAEWQKAAFTHCKWEKSTFEYGVFKHAQFTDNALDNCLINHSDFSLGTFDHCTLNGCFFSETHCDQTQFNQVIITSCIFEKCDGPKACFTESTIEKTSFISSSWVGGRLSHCYLNSLTTGLNTNLSESHFEQCSLNKMGFLKVNLQSSTFINCSMLESCCDKADFSQATLIACDMTAVRLKDANLVHSHWQNTSLQQSMFYNADLRDATFQRCNLAGANLAMISQNMDTRFEHCLTEKTHWIPRRYTVPA
>NZ_CP009935.1|WP_002214739.1|4111410_4112514_-|pentapeptide-repeat-containing-protein
MTPSDTPIMPPDSPRRIIGRHFTQRQLQQLTLSEVYFIQCTFTDISFAEIAVRNIHFESCHFTHLRLDGGRVENCSFRFCKFNDVSAQGVSILNTSCIEVQWQGCYLTGCLIERWLLTSCQLDDAQLQDIQLNYWTVQDTPMTHLTMSDSKMQDSSWHGCTIQQSVWKNSELIRQVMGSCVLKECQYQAIQSDTVVWSQCQLEQVDFRHQPLENSNFHKSTLTQCGFSDANLAAALFSEATLEGCDFNMAQLAAAQFVDATLRDCNFDTADLQNASLLRANLTRCHLTQVNLTKADLRSCMLSESSLQASKLSKTRIHGAQIPTLDTPLQMPDPLLSQIDNWYGHHQPGPKNNPKFPSIPSGASRYV
>NZ_CP009935.1|WP_002210473.1|4110800_4111418_-|DUF3540-domain-containing-protein
MSRLTTLLKPKNSLPGYLSYSPRTPLPAVSAPPQVITAKVIRPGNASVSLLGYETLPVTTASSCLFQPENGDLVSAVIDQQQIYITAILYRTSPDAPLVMNSGEVPLHLVTTALEIHSPDRVEIHTRHFSLLTRTTLWVAKTMHQVADSLFVRAKQASREVENTDDVHARHISQLADQSLMINSRIGSLNASAVLKIDGGQVHMG
>NZ_CP009935.1|WP_002214737.1|4110429_4110795_-|DUF4150-domain-containing-protein
MTAANTRAGGISFIGSDPMIPISAPNTAPNANGIPNVSNYFCCGGNEQNLNTIRPATIDGGSVMGAASGTHSAKMDPMQGSGKYFIQGSPATRLGDMSMTNNYNAPSTQIAPSQTKYFVNA
>NZ_CP009935.1|WP_002210471.1|4109945_4110437_-|type-VI-secretion-system-lipoprotein-TssJ
MRSLFRVLPIFILTGCVLLSGCSWFSSSSEAALQKRRIDLQVVAAPLINPGPNGQAQPLKVCIIELNKEGWSPPGLYQGTLCSGISVGGEVVSVTEYILAPTEVRQYSRDVPFEQERWWAIAAEFQEMSNGKSLLTLKSDARADFNRVVLVDGKALSLKASTK
>NZ_CP009935.1|WP_012229833.1|4106876_4108484_-|OmpA-family-protein
MNEFERQIRAAISAARNGAKHAEQSLTTPMWQAKSTVASLGGIVPRSGSSSTSQAENYKEGLADQAASGNNMARTSAPPVTLYQQQPNANDSYPNGNNNNPNGDNNNPNGSNNNIARVQRMPHGISRGLYERPGMLLGAWDNAYIAAAMPLLLVENIRSWPTRNAAEVRPPIVRELQYFQQHLQKKNYPQEDINHLSYLLCTYIDGIFNGLQTPDSYNQSLLVEFHRDAWGGEDCFEHLRVYMNSPKQYREVLEFYDLIMCLGFDGKYQMIEHGAVLLMDLRSRLHTQLYGQDATQSLAIAQAVKGSPRRQYIKALKIFTYGFALCLCAYGVTAWYLHQQSQQIRSNILTWVLPEPRKINIMETLPNPLSNILNEGWLEVRKDPRGWLLIFTSDGAFRTGEATLSEEFINKKNIERLGLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREISAIGRGESDPLADNATEEGRKRNRRVDILWKIGQRDADKAMKQFLENPTPEVQGTNTQQ
>NZ_CP009935.1|WP_002210468.1|4102998_4103352_-|hypothetical-protein
MLDPKNIQNVLKSSTDLGQQSQSDLQKPFVKGMQNMEMSGADAARSIMQSVNQSCETMMSDMNKILGGLQDNVDAHQKMQSEERPKDFERAMSDLRSTLSNGFPEEMKSMFDKLPKM
>NZ_CP009935.1|WP_002213036.1|4123415_4123634_+|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NZ_CP009935.1|WP_002231245.1|4123998_4124421_+|beta-hydroxyacyl-ACP-dehydratase
MIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NZ_CP009935.1|WP_012229841.1|4124410_4125694_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPEYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLIFEQAEHAKNRGAKIYAELLGASVNSDANYLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNVKKEVNIFLNNSFGMGGINSASLFSRYHG
>NZ_CP009935.1|WP_002213030.1|4125695_4126433_+|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEAILFLVAKESSYVNGAVFNVTGGIDWVY
>NZ_CP009935.1|WP_041854810.1|4126458_4127688_+|hydroxymethylglutaryl-CoA-synthase-family-protein
MGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLPWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NZ_CP009935.1|WP_002213026.1|4127680_4128400_+|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NZ_CP009935.1|WP_012229846.1|4128401_4129154_+|enoyl-CoA-hydratase
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLDLLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NZ_CP009935.1|WP_002213024.1|4129156_4129945_+|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQAFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NZ_CP009935.1|WP_002228570.1|4130031_4130472_+|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NZ_CP009935.1|WP_002213017.1|4130509_4130758_+|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009935_3	3.4\|2778704\|29\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778704-2778732	29	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1847921-1847949	5	0.828
NZ_CP009935_1	1.1\|176671\|27\|NZ_CP009935\|CRISPRCasFinder	176671-176697	27	NZ_CP026684	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence	54795-54821	6	0.778
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK820641	Gordonia phage EnalisNailo, complete genome	34088-34119	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK878898	Gordonia phage Zameen, complete genome	34513-34544	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK919483	Gordonia phage Suscepit, complete genome	34514-34545	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK284520	Gordonia phage Lilas, complete genome	35799-35830	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK016492	Gordonia phage Bialota, complete genome	35265-35296	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK820642	Gordonia phage Polly, complete genome	33956-33987	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	NC_041883	Gordonia phage Attis, complete genome	31646-31677	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK814755	Gordonia phage Antonio, complete genome	34513-34544	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK875796	Gordonia phage Tayonia, complete genome	34513-34544	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK801734	Gordonia phage LordFarquaad, complete genome	31627-31658	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	MK433274	Gordonia phage Bradissa, complete genome	34554-34585	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	KU963257	Gordonia phage Kita, complete genome	34522-34553	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	NC_031251	Gordonia phage SoilAssassin, complete genome	31645-31676	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	NC_031097	Gordonia phage Zirinka, complete genome	35253-35284	6	0.812
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	138555-138586	6	0.812
NZ_CP009935_3	3.4\|2778704\|29\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778704-2778732	29	NZ_CP050095	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence	167948-167976	6	0.793
NZ_CP009935_3	3.4\|2778704\|29\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778704-2778732	29	NC_008381	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence	378214-378242	6	0.793
NZ_CP009935_3	3.4\|2778704\|29\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778704-2778732	29	NZ_CP048284	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence	176172-176200	6	0.793
NZ_CP009935_3	3.1\|2778524\|32\|NZ_CP009935\|CRISPRCasFinder,CRT	2778524-2778555	32	CP049262	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence	69636-69667	7	0.781
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	JF974294	Aeromonas phage pIS4-A genomic sequence	21965-21996	7	0.781
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NC_021534	Vibrio phage pYD38-A genomic sequence	3299-3330	7	0.781
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	440819-440850	7	0.781
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	282870-282901	7	0.781
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	KJ433975	Mycobacterium phage 40BC, complete genome	23231-23262	7	0.781
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	KJ433973	Mycobacterium phage 39HC, complete genome	23231-23262	7	0.781
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	NC_024145	Mycobacterium phage Hosp, complete genome	21427-21458	7	0.781
NZ_CP009935_3	3.4\|2778704\|29\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778704-2778732	29	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	175906-175934	8	0.724
NZ_CP009935_3	3.4\|2778704\|29\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778704-2778732	29	NC_012529	Deinococcus deserti VCD115 plasmid 2, complete sequence	307040-307068	8	0.724
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	MF679145	Escherichia coli plasmid pBJ114-96, complete sequence	37586-37617	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	60831-60862	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP021340	Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence	67671-67702	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP021336	Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence	67672-67703	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP040920	Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence	33435-33466	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP024832	Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence	33830-33861	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP024817	Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence	62769-62800	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	15616-15647	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	112580-112611	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP023961	Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence	16858-16889	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	AP023222	Escherichia coli M505 plasmid pM505-b DNA, complete genome	93734-93765	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	AP023233	Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome	47570-47601	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP019075	Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence	16520-16551	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	3287-3318	9	0.719
NZ_CP009935_3	3.2\|2778584\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778584-2778615	32	NZ_CP011063	Escherichia coli str. Sanji plasmid pSJ_98, complete sequence	37637-37668	9	0.719
NZ_CP009935_3	3.3\|2778644\|32\|NZ_CP009935\|CRISPRCasFinder,CRT,PILER-CR	2778644-2778675	32	NZ_JX627581	Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence	30496-30527	10	0.688

1. spacer 3.4|2778704|29|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 5, identity: 0.828

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcgtcaatgagttgcgcgacgttccctgg	Protospacer
**********.***** ********   *

2. spacer 1.1|176671|27|NZ_CP009935|CRISPRCasFinder matches to NZ_CP026684 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence) position: , mismatch: 6, identity: 0.778

ccccacgtttttggcatggggtcatca	CRISPR spacer
gcaatcacttttggcatggggtcatca	Protospacer
 *   *..*******************

3. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

4. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

5. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

6. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

7. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

8. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

9. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

10. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

11. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

12. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

13. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

14. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

15. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

16. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

17. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

tcgccattccgtgaacctgagcgcgttcgcga--	CRISPR spacer
tcgcctttccctgaacctga--gcgatcgtgacc	Protospacer
***** **** *********  *** ***.**

18. spacer 3.4|2778704|29|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 6, identity: 0.793

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcaagaatgaattgcgggaagttctggcc	Protospacer
**.  ************** ****.***

19. spacer 3.4|2778704|29|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 6, identity: 0.793

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcaagaatgaattgcgggaagttctggcc	Protospacer
**.  ************** ****.***

20. spacer 3.4|2778704|29|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048284 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence) position: , mismatch: 6, identity: 0.793

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcaagaatgaattgcgggaagttctggcc	Protospacer
**.  ************** ****.***

21. spacer 3.1|2778524|32|NZ_CP009935|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

tcaggggactggcgaacaatgtctttcatgat	CRISPR spacer
acgtcgcgctggcgaacaatctctttcatgat	Protospacer
 *.  * .************ ***********

22. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

23. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

24. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

25. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

26. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

27. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

28. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

29. spacer 3.4|2778704|29|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 8, identity: 0.724

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcgtcaatgaatggcgggatgtttttatt	Protospacer
************ ******.***.. ..

30. spacer 3.4|2778704|29|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NC_012529 (Deinococcus deserti VCD115 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.724

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
gcgtcaaggaattgcgcgacgttcaaaac	Protospacer
 ****** ******** ******* ..

31. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

32. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

33. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

34. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

35. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

36. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

37. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

38. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

39. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat-----	CRISPR spacer
attatctgattggcagtttctttaac-----tgttta	Protospacer
********* ***** *******..*     *

40. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

41. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

42. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

43. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

44. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

45. spacer 3.2|2778584|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

46. spacer 3.3|2778644|32|NZ_CP009935|CRISPRCasFinder,CRT,PILER-CR matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
ctaacgagccgtgaacctcagcgcattcgcgt	Protospacer
... *.  ********** *****.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43258 : 98677

uncultured_Mediterranean_phage(25.0%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012228761.1\|43258_44734_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
WP_002209980.1\|45481_46597_-	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	3.0e-96	50.7
WP_002209979.1\|46600_47485_-	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	3.1e-80	51.0
WP_002209978.1\|47664_48087_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_002209977.1\|48086_48650_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_002209976.1\|48765_49725_-	glutathione synthase	NA	NA	NA	NA
WP_002209975.1\|49750_50482_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_012229925.1\|50590_50773_-	hypothetical protein	NA	NA	NA	NA
WP_002209973.1\|50751_51459_-	deoxyribonuclease I	NA	NA	NA	NA
WP_002228653.1\|51556_52069_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_002209971.1\|52261_53416_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_002209969.1\|54604_56584_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002209968.1\|56743_57064_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_071525520.1\|57097_57208_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002209967.1\|57353_58106_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_002209965.1\|58596_60591_+	transketolase	NA	NA	NA	NA
WP_002213775.1\|60898_61357_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_012229926.1\|61446_61611_+	hypothetical protein	NA	NA	NA	NA
WP_002209896.1\|61722_62034_+	PTS transporter subunit EIIB	A0A2I7SAJ6	Vibrio_phage	3.3e-08	39.2
WP_002215759.1\|62390_63650_-	maltoporin	NA	NA	NA	NA
WP_002209894.1\|63921_64995_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.9e-72	43.6
WP_002213775.1\|65175_65634_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_012229927.1\|66017_68387_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_002209891.1\|68537_69845_-	MFS transporter	NA	NA	NA	NA
WP_002209890.1\|70238_71321_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_002209889.1\|71543_72122_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_002209888.1\|72145_73000_-	tagatose bisphosphate family class II aldolase	NA	NA	NA	NA
WP_002209887.1\|73109_74597_-	DUF2264 domain-containing protein	NA	NA	NA	NA
WP_002209886.1\|74719_76327_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_012229928.1\|76347_77574_-	anaerobic sulfatase maturase	A0A1B2IC15	Erwinia_phage	5.4e-06	33.1
WP_002209884.1\|78004_79063_-	glycoside hydrolase family 105 protein	NA	NA	NA	NA
WP_002230627.1\|79078_79834_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	6.7e-15	29.7
WP_002209882.1\|80029_81196_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_002209881.1\|81198_81639_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_002209880.1\|81724_82615_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_012229929.1\|82604_83393_-	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA
WP_002209878.1\|83439_83937_-	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA
WP_012229932.1\|83954_85121_-	SIS domain-containing protein	NA	NA	NA	NA
WP_002209876.1\|85117_86416_-	tagatose-bisphosphate aldolase subunit KbaZ	NA	NA	NA	NA
WP_002362901.1\|86465_87218_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002209873.1\|88081_89635_+	sulfatase	A0A1V0SA98	Catovirus	5.4e-19	26.1
WP_002213759.1\|90086_90545_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002208669.1\|90751_91720_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.9e-46	39.7
WP_002208670.1\|91730_93578_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_002208671.1\|93605_93941_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	6.4e-10	35.6
WP_002208672.1\|94052_95177_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.2e-90	45.8
WP_002208673.1\|95269_96340_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002216927.1\|96542_97124_+	ACP phosphodiesterase	NA	NA	NA	NA
WP_002208675.1\|97402_98005_+	peroxiredoxin C	NA	NA	NA	NA
WP_042666680.1\|98218_98677_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

137659 : 197341

Escherichia_phage(44.44%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012229943.1\|137659_139015_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_002212137.1\|139043_139892_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_002212136.1\|139901_140660_-	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	1.4e-23	40.7
WP_002212135.1\|140883_142080_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_002212134.1\|142293_142851_-	ribosome recycling factor	NA	NA	NA	NA
WP_012229944.1\|142986_143712_-	UMP kinase	NA	NA	NA	NA
WP_002212132.1\|143920_144778_-	elongation factor Ts	NA	NA	NA	NA
WP_002221800.1\|144905_145631_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_002212129.1\|146839_149521_+	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_002212128.1\|149695_150520_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_002212127.1\|150643_151033_+	DUF3461 family protein	NA	NA	NA	NA
WP_002212126.1\|151122_151572_-	flavodoxin	NA	NA	NA	NA
WP_002212125.1\|151599_152373_-\|tRNA	tRNA pseudouridine(65) synthase TruC	NA	NA	NA	NA
WP_002212124.1\|152372_152705_-	YqcC family protein	NA	NA	NA	NA
WP_002209872.1\|152954_153389_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_000255944.1\|153445_154468_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|154467_155247_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_012229945.1\|155297_156818_-	aminotransferase class V-fold PLP-dependent enzyme	G9BWD6	Planktothrix_phage	5.3e-35	41.1
WP_002208733.1\|156798_157452_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_002208734.1\|157448_158117_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012229946.1\|158129_158918_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002208736.1\|159245_160079_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_002208738.1\|160388_160592_+	oxalurate catabolism protein HpxX	NA	NA	NA	NA
WP_002208739.1\|160588_161986_+	AtzE family amidohydrolase	NA	NA	NA	NA
WP_002264506.1\|162095_162482_+	oxalurate catabolism protein HpxZ	NA	NA	NA	NA
WP_002208741.1\|162718_163918_+	MFS transporter	NA	NA	NA	NA
WP_002208742.1\|164077_164851_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_002208743.1\|164847_165189_+	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_002208744.1\|165360_165873_+	transcriptional repressor MprA	NA	NA	NA	NA
WP_002208745.1\|166256_167429_+	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_002208746.1\|167467_169003_+	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_012229947.1\|169125_170292_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_002216643.1\|170543_170981_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	2.6e-11	36.6
WP_002208749.1\|171150_171900_+	DTW domain-containing protein	NA	NA	NA	NA
WP_002223249.1\|171942_174585_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002208751.1\|174760_176116_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_002208752.1\|176177_176519_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_002220061.1\|181915_182101_+	hypothetical protein	NA	NA	NA	NA
WP_002217405.1\|182426_185000_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.4e-128	34.9
WP_002209471.1\|185129_185861_-	polyphenol oxidase	NA	NA	NA	NA
WP_002231132.1\|185862_186840_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_002209469.1\|186975_187707_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002209468.1\|188061_188424_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_041854827.1\|188755_189214_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002228330.1\|189496_190654_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_002209465.1\|190758_191880_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_002228238.1\|191892_192963_-	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.5e-89	51.4
WP_002223245.1\|193195_193912_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001297096.1\|194065_194845_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|194844_195867_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002213775.1\|196882_197341_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1054732 : 1115342

Bacillus_phage(17.65%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|1054732_1055191_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002208996.1\|1055433_1056081_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_002208995.1\|1056215_1056812_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_011566231.1\|1056933_1057392_-	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	6.0e-51	61.5
WP_002208993.1\|1057369_1058587_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	9.1e-46	34.8
WP_002208992.1\|1058780_1059449_+	JAB domain-containing protein	NA	NA	NA	NA
WP_002208991.1\|1059711_1059948_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_002208990.1\|1059959_1060127_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_002208989.1\|1060209_1061019_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	A0A127AWE5	Bacillus_phage	6.7e-21	32.7
WP_002208988.1\|1061024_1061504_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.0e-29	45.7
WP_002208987.1\|1061500_1062283_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002208986.1\|1062283_1063561_-	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_002208985.1\|1063980_1064946_-	lipopolysaccharide heptosyltransferase RfaC	NA	NA	NA	NA
WP_002208984.1\|1064945_1066010_-	ADP-heptose--LPS heptosyltransferase RfaF	NA	NA	NA	NA
WP_002208983.1\|1066040_1066973_-	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	1.3e-31	36.6
WP_002208982.1\|1067218_1068430_+	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	4.6e-34	27.6
WP_002208981.1\|1068439_1069465_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	8.0e-19	80.8
WP_002208980.1\|1070560_1071931_-	murein hydrolase activator EnvC	G9BW84	Planktothrix_phage	2.4e-10	35.7
WP_002208979.1\|1071940_1073488_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_002208978.1\|1073884_1074319_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_002208977.1\|1074437_1074686_+	glutaredoxin 3	V9QKN6	Rhizobium_phage	5.4e-14	50.0
WP_002208976.1\|1074773_1075250_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_002208975.1\|1075249_1076269_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002208974.1\|1076534_1077356_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_002208973.1\|1077478_1077967_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_000255944.1\|1079058_1080081_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_012228794.1\|1080080_1080860_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.9e-138	99.2
WP_002208971.1\|1081227_1082604_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	1.5e-17	25.4
WP_002208970.1\|1082600_1083299_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	1.8e-06	29.5
WP_002208969.1\|1083472_1083961_+	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_002221684.1\|1084417_1084594_+	hypothetical protein	NA	NA	NA	NA
WP_002353252.1\|1084677_1085598_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	8.6e-73	54.3
WP_002208967.1\|1086159_1087062_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
WP_002208966.1\|1087279_1088263_+	6-phosphofructokinase	NA	NA	NA	NA
WP_002208965.1\|1088483_1089473_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002218867.1\|1089722_1090499_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002208963.1\|1090616_1092044_-	anion permease	NA	NA	NA	NA
WP_002208962.1\|1092109_1092823_-	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase	NA	NA	NA	NA
WP_002208961.1\|1092819_1093557_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_002208960.1\|1093693_1094929_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002208959.1\|1095160_1095928_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_002215864.1\|1096056_1096692_-	YiiQ family protein	NA	NA	NA	NA
WP_002208957.1\|1096839_1097274_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_002208956.1\|1097595_1098342_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_041854751.1\|1098496_1099507_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_002218876.1\|1099743_1101267_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_002208954.1\|1101443_1102292_-	aquaporin family protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	3.2e-13	27.5
WP_002208953.1\|1102919_1103159_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_002213759.1\|1103366_1103825_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002230357.1\|1104195_1106310_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	2.8e-34	26.5
WP_002208949.1\|1106302_1107595_-	HlyD family secretion protein	NA	NA	NA	NA
WP_002215873.1\|1107807_1108047_+	hypothetical protein	NA	NA	NA	NA
WP_002228141.1\|1108676_1109261_+	DUF4232 domain-containing protein	NA	NA	NA	NA
WP_002208945.1\|1109377_1109863_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_002208944.1\|1110004_1110922_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_002208943.1\|1111157_1112489_-	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.2e-43	29.8
WP_002208942.1\|1112559_1113084_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_002208941.1\|1113183_1114029_-	cell division protein FtsN	NA	NA	NA	NA
WP_002213775.1\|1114883_1115342_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1120149 : 1208413

Acinetobacter_phage(22.22%)

transposase,protease,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209474.1\|1120149_1121253_-\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_002228170.1\|1121732_1123610_+	TonB-dependent vitamin B12 receptor BtuB	A0A0P0I887	Acinetobacter_phage	1.3e-11	24.8
WP_002228171.1\|1123554_1124418_+	glutamate racemase	NA	NA	NA	NA
WP_041175547.1\|1124683_1124869_-	hypothetical protein	NA	NA	NA	NA
WP_086016626.1\|1130408_1131507_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-46	39.2
WP_002215609.1\|1134635_1135334_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002209983.1\|1135466_1136288_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_002209984.1\|1136575_1137130_+	YggT family protein	NA	NA	NA	NA
WP_002215612.1\|1137126_1137417_+	YggU family protein	NA	NA	NA	NA
WP_002215614.1\|1137516_1138110_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_002209987.1\|1138102_1139233_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_002209743.1\|1139401_1140610_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_041854754.1\|1140745_1150078_-	pore forming RTX toxin family protein	NA	NA	NA	NA
WP_002209989.1\|1151418_1152345_-	glutaminase B	NA	NA	NA	NA
WP_002209990.1\|1152455_1152782_-	YggL family protein	NA	NA	NA	NA
WP_002209991.1\|1152781_1153501_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_041854841.1\|1153838_1154954_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002230648.1\|1155131_1155404_+	oxidative damage protection protein	NA	NA	NA	NA
WP_002209995.1\|1155586_1156663_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_002209997.1\|1156944_1158045_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002209998.1\|1158133_1160167_+	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	4.5e-05	26.1
WP_012228890.1\|1160249_1161230_-	ABC transporter permease	NA	NA	NA	NA
WP_002210000.1\|1161262_1162762_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-19	31.7
WP_002210001.1\|1162807_1163767_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002210002.1\|1164322_1166485_-	ornithine decarboxylase SpeF	NA	NA	NA	NA
WP_002210005.1\|1167813_1168449_-	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_086016632.1\|1169056_1169754_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.3e-60	48.5
WP_002210008.1\|1169849_1170617_-	hypothetical protein	NA	NA	NA	NA
WP_002210009.1\|1170603_1172901_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_012228901.1\|1172916_1175265_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.1e-18	33.3
WP_012228902.1\|1175261_1177910_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.8e-92	29.5
WP_012228903.1\|1178327_1178819_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_041854755.1\|1178822_1180559_-	OmpA family protein	NA	NA	NA	NA
WP_002210015.1\|1180558_1181245_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002213011.1\|1181241_1182594_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_041854756.1\|1182605_1184150_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012228906.1\|1184192_1184693_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002215900.1\|1186967_1187363_-	lipoprotein	NA	NA	NA	NA
WP_002215902.1\|1187813_1188464_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002215903.1\|1189638_1190289_+	acyl-homoserine-lactone synthase	NA	NA	NA	NA
WP_002211655.1\|1190269_1191013_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_012228910.1\|1192896_1194237_+	peptidase	NA	NA	NA	NA
WP_002211652.1\|1194613_1195447_+	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA
WP_002228661.1\|1195594_1195789_-	hypothetical protein	NA	NA	NA	NA
WP_002211651.1\|1195736_1196960_-	MFS transporter	NA	NA	NA	NA
WP_002211649.1\|1198854_1199805_+	acetyltransferase	NA	NA	NA	NA
WP_002211648.1\|1199801_1201550_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_012228914.1\|1202947_1205128_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_002211645.1\|1205386_1206811_-	MFS transporter	NA	NA	NA	NA
WP_100067904.1\|1207058_1208413_-\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7

DBSCAN-SWA_5

2168885 : 2224362

uncultured_Mediterranean_phage(18.18%)

transposase,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002216203.1\|2168885_2169401_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.6e-28	55.6
WP_012229216.1\|2169406_2170048_-	stringent starvation protein A	NA	NA	NA	NA
WP_002230558.1\|2170227_2170425_+	hypothetical protein	NA	NA	NA	NA
WP_002210133.1\|2170421_2170814_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_002210132.1\|2170828_2171257_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_002210131.1\|2171570_2172698_-	cell division protein ZapE	NA	NA	NA	NA
WP_002210130.1\|2172921_2173326_+	DUF1043 family protein	NA	NA	NA	NA
WP_002218066.1\|2173596_2174970_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	7.4e-20	28.2
WP_002213775.1\|2175086_2175545_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210128.1\|2175770_2176859_+	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IRD3	uncultured_Mediterranean_phage	2.1e-09	31.8
WP_002210127.1\|2177039_2178302_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002210126.1\|2178442_2178697_-	BolA family iron metabolism protein IbaG	NA	NA	NA	NA
WP_002210125.1\|2178843_2179146_-	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA
WP_002210124.1\|2179181_2179805_-	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_002210123.1\|2179817_2180375_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_002210122.1\|2180379_2181162_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_002210121.1\|2181379_2182198_-	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	2.2e-19	31.7
WP_002210120.1\|2182462_2183437_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_002210119.1\|2183547_2184534_+	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	6.0e-40	30.8
WP_002228203.1\|2184782_2185346_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	9.6e-59	83.0
WP_002218352.1\|2185342_2185906_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_002210117.1\|2185889_2186435_+	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
WP_002210116.1\|2186441_2187167_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-22	28.4
WP_012229232.1\|2187228_2188662_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_002213952.1\|2189090_2189573_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_002210113.1\|2189878_2190733_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-05	30.0
WP_002210112.1\|2190729_2191002_+	PTS phosphocarrier protein NPr	NA	NA	NA	NA
WP_002210111.1\|2191339_2192275_+	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	1.5e-48	38.5
WP_002210110.1\|2192286_2192751_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_002210109.1\|2192888_2193275_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_002210107.1\|2193573_2194050_+	hypothetical protein	NA	NA	NA	NA
WP_002210106.1\|2194283_2195237_+	HTH-type transcriptional regulator TreR	NA	NA	NA	NA
WP_002215779.1\|2195647_2197063_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_002210104.1\|2197157_2198825_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_002210103.1\|2199177_2199588_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_002210102.1\|2199827_2200214_-	cytochrome b562	NA	NA	NA	NA
WP_011055205.1\|2200421_2201066_-	hypothetical protein	A0A1B0VBK8	Salmonella_phage	3.4e-52	49.0
WP_012229239.1\|2201314_2202655_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_002210099.1\|2202835_2203384_+	ribosome-associated protein	NA	NA	NA	NA
WP_002210098.1\|2203495_2203777_-	ribonuclease inhibitor	NA	NA	NA	NA
WP_002214288.1\|2203781_2204255_-	ribonuclease Ba	NA	NA	NA	NA
WP_002210095.1\|2206190_2208146_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002210094.1\|2208147_2209083_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002210093.1\|2209090_2209294_-	AaeX family protein	NA	NA	NA	NA
WP_002210092.1\|2209596_2210508_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002214297.1\|2210768_2211635_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002210090.1\|2211870_2214372_+	toxin	NA	NA	NA	NA
WP_012229241.1\|2214412_2218006_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_002210089.1\|2218062_2222553_+	toxin	NA	NA	NA	NA
WP_012229243.1\|2222892_2224362_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.7e-179	99.4

DBSCAN-SWA_6

2264753 : 2338664

Bacillus_virus(12.5%)

transposase,protease,tRNA,integrase

attL 2285769:2285828|attR 2346743:2347759

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042666681.1\|2264753_2265212_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210051.1\|2265616_2266792_+	DNA repair ATPase	NA	NA	NA	NA
WP_002210050.1\|2266898_2268245_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_002228699.1\|2268498_2269350_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_012229272.1\|2269539_2270145_-	SIS domain-containing protein	NA	NA	NA	NA
WP_012229273.1\|2270141_2271779_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_002210046.1\|2271797_2272751_-	ABC transporter permease	NA	NA	NA	NA
WP_012229276.1\|2272752_2273697_-	ABC transporter permease	NA	NA	NA	NA
WP_002210044.1\|2273689_2275186_-	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-13	26.7
WP_012229279.1\|2275389_2276379_-	autoinducer 2 ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210042.1\|2277172_2278093_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	6.8e-78	53.5
WP_002210041.1\|2278244_2279432_+	hypothetical protein	NA	NA	NA	NA
WP_002215816.1\|2279649_2281299_-	Na+/H+ antiporter	NA	NA	NA	NA
WP_002210039.1\|2281647_2283003_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.1e-164	74.0
WP_002210038.1\|2283456_2283660_+	DNA-damage-inducible protein J	NA	NA	NA	NA
WP_012229280.1\|2284267_2285083_-	aliphatic sulfonates ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	34.2
WP_012229282.1\|2285222_2286698_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
2285769:2285828	attL	NA	NA	NA	NA
WP_002209166.1\|2286831_2288895_+	McrB family protein	K4I1H4	Acidithiobacillus_phage	5.3e-30	33.2
WP_002209167.1\|2288891_2290208_+	McrC family protein	NA	NA	NA	NA
WP_002209169.1\|2291231_2292557_+	site-specific DNA-methyltransferase	NA	NA	NA	NA
WP_002230553.1\|2292606_2293329_+	histidine kinase	NA	NA	NA	NA
WP_012229284.1\|2293300_2294737_+	hypothetical protein	NA	NA	NA	NA
WP_002209743.1\|2294699_2295908_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002215988.1\|2297331_2298045_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002208592.1\|2298424_2299567_+	glycosyltransferase	NA	NA	NA	NA
WP_002208591.1\|2301033_2302047_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012229288.1\|2303190_2304156_+	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	4.8e-82	47.6
WP_002208590.1\|2304335_2305742_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.4e-50	30.3
WP_002208589.1\|2305744_2306488_+	glycosyltransferase	A0A1V0SAH6	Catovirus	8.6e-07	34.8
WP_002208588.1\|2306492_2307866_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	8.1e-35	29.1
WP_002208587.1\|2307913_2309065_+	LPS O-antigen length regulator	NA	NA	NA	NA
WP_002208586.1\|2309268_2310573_+	inosine/guanosine kinase	NA	NA	NA	NA
WP_012229292.1\|2310669_2312358_-	Kef family K(+) transporter	NA	NA	NA	NA
WP_002208584.1\|2312592_2313807_-	MFS transporter	NA	NA	NA	NA
WP_002208583.1\|2315828_2316068_-	hypothetical protein	NA	NA	NA	NA
WP_002208581.1\|2316404_2316884_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_002208580.1\|2317148_2317958_-	hypothetical protein	NA	NA	NA	NA
WP_012229295.1\|2318478_2321346_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	8.5e-111	36.7
WP_002208578.1\|2321552_2321972_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_002208577.1\|2322080_2322530_-	NfeD family protein	NA	NA	NA	NA
WP_002208576.1\|2322532_2323447_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_002208575.1\|2323641_2324511_-	co-chaperone YbbN	NA	NA	NA	NA
WP_002208574.1\|2324587_2325364_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_041854772.1\|2325750_2326386_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_012229298.1\|2326356_2327043_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-30	33.8
WP_002208571.1\|2327039_2329469_+	ABC transporter permease	NA	NA	NA	NA
WP_002208570.1\|2329512_2330577_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002208569.1\|2330573_2331098_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_002208568.1\|2331373_2332096_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_002208567.1\|2332106_2332601_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_002222677.1\|2332811_2334197_+\|tRNA	cysteine--tRNA ligase	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	2.2e-40	28.5
WP_002213759.1\|2334523_2334982_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209775.1\|2335128_2335341_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_002209774.1\|2335355_2336222_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.2e-30	34.1
WP_041854773.1\|2336577_2336760_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_002215268.1\|2337018_2337219_-	hypothetical protein	NA	NA	NA	NA
WP_012229308.1\|2337332_2337980_-	hypothetical protein	NA	NA	NA	NA
WP_002215266.1\|2337964_2338303_-	hypothetical protein	NA	NA	NA	NA
WP_079866998.1\|2338385_2338664_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y6Q1	Salmonella_phage	4.2e-31	73.5
2346743:2347759	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2465230 : 2533247

Escherichia_phage(13.04%)

tail,transposase,plate,protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210751.1\|2465230_2466049_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002210753.1\|2466265_2467756_-	molybdate ABC transporter ATP-binding protein ModF	A0A1M7XV31	Cedratvirus	2.8e-12	26.8
WP_002210754.1\|2467865_2468657_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA
WP_002217291.1\|2468905_2469058_+	multidrug efflux pump-associated protein, AcrZ family	NA	NA	NA	NA
WP_002210756.1\|2469292_2470072_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012229365.1\|2470071_2470767_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_002210758.1\|2470760_2471840_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	1.4e-21	35.1
WP_002210759.1\|2471895_2472717_-	pyridoxal phosphatase	NA	NA	NA	NA
WP_002220188.1\|2474192_2475473_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.4e-17	32.1
WP_002210762.1\|2475571_2476609_+	biotin synthase BioB	NA	NA	NA	NA
WP_002210763.1\|2476608_2477760_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_002210764.1\|2477743_2478547_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_002216554.1\|2478539_2479262_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_002210766.1\|2479394_2480105_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-13	25.3
WP_002210767.1\|2481199_2483215_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_002210768.1\|2483506_2483752_+	DNA-binding protein VF530	NA	NA	NA	NA
WP_002210769.1\|2483882_2484806_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	3.7e-23	27.8
WP_002210771.1\|2485337_2486318_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_002210772.1\|2486418_2486898_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_002210773.1\|2486894_2487140_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_002210774.1\|2487142_2487595_+	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_002210775.1\|2487737_2488448_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_002213759.1\|2488682_2489141_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_012228761.1\|2489542_2491018_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
WP_002210825.1\|2493189_2494344_-	MFS transporter	NA	NA	NA	NA
WP_002210826.1\|2495454_2496570_+	porin OmpC	Q1MVN1	Enterobacteria_phage	9.6e-111	57.6
WP_002228026.1\|2497309_2498476_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA
WP_002208870.1\|2498750_2500277_-	MFS transporter	NA	NA	NA	NA
WP_002230695.1\|2500653_2501682_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002208868.1\|2501755_2503543_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5
WP_002208867.1\|2503979_2504915_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA
WP_002208866.1\|2505086_2505329_-	DinI family protein	K7PKR6	Enterobacteria_phage	6.9e-22	65.0
WP_002208864.1\|2505534_2506257_-	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_002215470.1\|2506530_2507010_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_002208862.1\|2507220_2508525_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-90	46.0
WP_002208861.1\|2509233_2510046_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002208860.1\|2510021_2510816_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_002208859.1\|2511447_2511738_+	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_002208858.1\|2511783_2512401_+	ATP-binding protein	NA	NA	NA	NA
WP_002208857.1\|2512405_2512600_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-08	60.4
WP_002208856.1\|2512596_2514105_+\|tail	tail protein	B5TK67	Pseudomonas_phage	2.4e-104	44.2
WP_002208855.1\|2514126_2514495_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002208854.1\|2514496_2514796_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002208853.1\|2514916_2516410_+\|coat	coat protein	NA	NA	NA	NA
WP_012229392.1\|2516676_2518083_+	hypothetical protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_002208850.1\|2518079_2519135_+\|tail	tail protein	M1PVV2	Vibrio_phage	1.3e-37	27.2
WP_012229395.1\|2519150_2519747_+\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_002208848.1\|2519743_2520199_+	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002208847.1\|2520202_2521339_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	4.5e-31	30.5
WP_002215458.1\|2521335_2521596_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_002208846.1\|2521592_2521940_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	6.4e-21	41.3
WP_012229397.1\|2522036_2522816_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	1.0e-50	51.9
WP_002208843.1\|2523113_2523854_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_012229399.1\|2524144_2525581_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002208841.1\|2525706_2526069_-	hypothetical protein	NA	NA	NA	NA
WP_002208840.1\|2526768_2527257_-	hypothetical protein	NA	NA	NA	NA
WP_002208839.1\|2527269_2528418_-	HNH endonuclease	NA	NA	NA	NA
WP_002230704.1\|2528774_2529158_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	7.8e-36	66.7
WP_002208837.1\|2529388_2531185_-	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_002208836.1\|2531212_2531440_-	YejL family protein	NA	NA	NA	NA
WP_002208835.1\|2531617_2532622_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	3.1e-84	47.7
WP_002213759.1\|2532788_2533247_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

2992378 : 3013288

uncultured_virus(50.0%)

transposase,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209743.1\|2992378_2993587_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209688.1\|2994766_2995108_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_002209687.1\|2995182_2995530_-	hypothetical protein	NA	NA	NA	NA
WP_002209686.1\|2995554_2996034_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012104872.1\|2996098_2996905_-	ImpE family protein	NA	NA	NA	NA
WP_002354537.1\|2996924_2997767_-	TagK domain-containing protein	NA	NA	NA	NA
WP_002209684.1\|2997772_2998033_-	hypothetical protein	NA	NA	NA	NA
WP_012229527.1\|2998131_3000756_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.4e-29	23.1
WP_042666695.1\|3001560_3002769_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209681.1\|3006241_3007078_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_012228761.1\|3007093_3008569_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
WP_002211286.1\|3009202_3009391_+	hypothetical protein	NA	NA	NA	NA
WP_002220006.1\|3009656_3010175_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_002224683.1\|3010243_3011995_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_002226586.1\|3012205_3012661_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_042666681.1\|3012829_3013288_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

3264313 : 3294073

Cronobacter_phage(17.24%)

transposase,tail,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042666697.1\|3264313_3264772_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_144405494.1\|3266351_3267305_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	4.7e-167	99.7
WP_001297096.1\|3267372_3268152_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002215632.1\|3268319_3268580_-	excisionase family protein	Q859D3	Escherichia_coli_phage	1.7e-10	42.9
WP_071525537.1\|3268879_3269629_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	1.5e-54	48.5
WP_002211736.1\|3269604_3270051_+	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	3.9e-47	62.5
WP_002211735.1\|3270124_3270730_+	recombination protein NinG	A0A1P8DTE0	Proteus_phage	2.8e-56	56.9
WP_002215636.1\|3270730_3271120_+	antitermination protein	A0A1W6JNX1	Morganella_phage	1.4e-45	68.8
WP_041854794.1\|3271123_3271342_+	hypothetical protein	NA	NA	NA	NA
WP_002211732.1\|3271390_3271954_+	hypothetical protein	B6SD63	Bacteriophage	9.4e-30	58.0
WP_002211731.1\|3272377_3272587_+	hypothetical protein	NA	NA	NA	NA
WP_002430108.1\|3272933_3273131_+	hypothetical protein	B6SD15	Bacteriophage	4.9e-18	64.4
WP_002211730.1\|3273161_3273674_+	lysozyme	I6PBN2	Cronobacter_phage	9.7e-50	61.6
WP_002211729.1\|3273658_3274117_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	4.9e-21	45.3
WP_002211727.1\|3274662_3275376_+	hypothetical protein	Q5MBW0	Stx1-converting_phage	7.6e-69	60.2
WP_002211724.1\|3276328_3276778_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.0e-47	72.9
WP_002211723.1\|3276781_3277366_+	hypothetical protein	A0A0R6PHH0	Moraxella_phage	4.8e-69	70.7
WP_002209743.1\|3277413_3278622_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211722.1\|3278626_3279601_+	hypothetical protein	A0A1W6JNY3	Morganella_phage	2.3e-153	81.1
WP_002228445.1\|3279600_3280329_+	hypothetical protein	A0A1B0VMH0	Pseudomonas_phage	4.6e-61	51.4
WP_002228446.1\|3280347_3280989_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	3.8e-59	54.1
WP_012229589.1\|3280989_3282102_+	hypothetical protein	I6PD76	Cronobacter_phage	3.9e-120	58.0
WP_002211720.1\|3282223_3282997_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.8e-69	62.3
WP_002211717.1\|3283871_3284126_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.2e-18	53.1
WP_002211716.1\|3284127_3284478_+	hypothetical protein	I6PD77	Cronobacter_phage	6.9e-31	56.0
WP_002211715.1\|3284479_3285064_+	hypothetical protein	G8C7Q1	Escherichia_phage	3.6e-48	52.1
WP_002211714.1\|3285060_3285468_+	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_002211713.1\|3285533_3286454_+\|tail	phage tail protein	I6PBN6	Cronobacter_phage	4.4e-61	49.1
WP_002211712.1\|3286466_3286778_+	hypothetical protein	I6PDG2	Cronobacter_phage	1.4e-30	58.3
WP_071525538.1\|3286825_3287086_+	hypothetical protein	A0A0S2SY90	Pseudomonas_phage	3.7e-13	50.0
WP_012229598.1\|3287086_3290590_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	1.1e-117	33.2
WP_002211710.1\|3290592_3290934_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.7e-21	50.0
WP_002213759.1\|3291239_3291698_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210990.1\|3291953_3292793_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002222427.1\|3293104_3294073_-	alpha/beta hydrolase	A0A2P1EM31	Moumouvirus	7.3e-14	28.7

DBSCAN-SWA_10

3385958 : 3505319

Escherichia_phage(14.29%)

transposase,protease,tail,integrase

attL 3481746:3481776|attR 3505345:3505375

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|3385958_3386417_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_012229644.1\|3386506_3388531_+	virulence factor	NA	NA	NA	NA
WP_012229646.1\|3388699_3389494_-	DUF1460 domain-containing protein	NA	NA	NA	NA
WP_002232808.1\|3389855_3389951_+	ilvB operon leader peptide IvbL	NA	NA	NA	NA
WP_002213759.1\|3390157_3390616_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002230908.1\|3392435_3392783_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002211025.1\|3392849_3393524_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_002223598.1\|3393654_3396051_-	hypothetical protein	NA	NA	NA	NA
WP_002211024.1\|3396596_3398042_-	alkaline phosphatase	NA	NA	NA	NA
WP_002211023.1\|3398282_3398801_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.6e-23	50.5
WP_002211022.1\|3398873_3399626_+	FNR family transcription factor	NA	NA	NA	NA
WP_002211020.1\|3400990_3402385_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_002211019.1\|3402457_3403984_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_002211018.1\|3404513_3405467_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_002211017.1\|3405736_3407128_+	amino acid permease	NA	NA	NA	NA
WP_012229654.1\|3407151_3407568_-	hypothetical protein	NA	NA	NA	NA
WP_002211015.1\|3407864_3408611_+	two-component system response regulator RstA	NA	NA	NA	NA
WP_012229656.1\|3410015_3411515_+	carboxypeptidase M32	NA	NA	NA	NA
WP_002213759.1\|3411636_3412095_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210622.1\|3412324_3414940_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.4e-88	34.1
WP_002228458.1\|3414966_3415266_-	hypothetical protein	NA	NA	NA	NA
WP_002210623.1\|3415358_3415610_+	YciN family protein	NA	NA	NA	NA
WP_002210624.1\|3415728_3416775_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.6e-22	32.0
WP_002210625.1\|3416946_3417708_+	YciK family oxidoreductase	NA	NA	NA	NA
WP_002210626.1\|3417724_3418315_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_012229663.1\|3418437_3419472_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_041854882.1\|3419801_3420401_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_079993239.1\|3420357_3421263_-	PHP domain-containing protein	NA	NA	NA	NA
WP_002227930.1\|3421536_3421599_+	trp operon leader peptide	NA	NA	NA	NA
WP_002228454.1\|3421717_3423280_+	anthranilate synthase component 1	NA	NA	NA	NA
WP_002215981.1\|3423279_3423858_+	glutamine amidotransferase	A0A0P0IKJ1	Acinetobacter_phage	7.4e-30	37.3
WP_041854798.1\|3423872_3424871_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.0e-50	37.8
WP_012229668.1\|3424874_3426302_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	2.9e-35	39.0
WP_002210633.1\|3426458_3427649_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_012229670.1\|3427648_3428464_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_002210636.1\|3428806_3429121_+	BON domain-containing protein	NA	NA	NA	NA
WP_041854799.1\|3429678_3429858_-	hypothetical protein	NA	NA	NA	NA
WP_012229672.1\|3429857_3431048_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_002230897.1\|3431167_3431803_-	outer membrane protein OmpW	NA	NA	NA	NA
WP_002210638.1\|3431911_3432127_-	hypothetical protein	NA	NA	NA	NA
WP_002210639.1\|3432288_3433059_+	UPF0259 family protein	NA	NA	NA	NA
WP_002215979.1\|3433179_3433800_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_041854800.1\|3433831_3434860_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.1e-07	25.2
WP_002210640.1\|3435090_3435633_+	septation protein A	NA	NA	NA	NA
WP_002210641.1\|3435712_3436162_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_002209743.1\|3436309_3437518_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210664.1\|3438031_3439378_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-81	38.3
WP_002210665.1\|3439684_3440701_-	two-component system response regulator RssB	NA	NA	NA	NA
WP_002213759.1\|3441586_3442045_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210666.1\|3442745_3443210_+	YchJ family protein	NA	NA	NA	NA
WP_002230891.1\|3443293_3444142_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	7.0e-13	37.3
WP_002209743.1\|3444742_3445951_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211667.1\|3447876_3448683_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_002211668.1\|3448780_3449167_+	pyrimidine (deoxy)nucleoside triphosphate diphosphatase	NA	NA	NA	NA
WP_002211669.1\|3449179_3449470_-	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_002211670.1\|3449466_3451392_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.2e-37	30.4
WP_002211671.1\|3451453_3452500_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_002211673.1\|3452724_3453276_-	NAD(P)H nitroreductase	NA	NA	NA	NA
WP_002230886.1\|3453438_3455289_+	signal peptide peptidase SppA	NA	NA	NA	NA
WP_002211675.1\|3455405_3456422_+	asparaginase	NA	NA	NA	NA
WP_002211676.1\|3456436_3457084_+	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L6K4	Tupanvirus	1.8e-21	33.0
WP_002217933.1\|3457217_3457490_-	YeaC family protein	NA	NA	NA	NA
WP_002211677.1\|3457560_3457974_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_002224141.1\|3458321_3459317_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002211679.1\|3459630_3460506_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_002430110.1\|3460578_3461328_-	MipA/OmpV family protein	NA	NA	NA	NA
WP_002211681.1\|3461771_3463706_+	protein kinase YeaG	NA	NA	NA	NA
WP_002211683.1\|3465237_3466356_+	DMT family transporter	NA	NA	NA	NA
WP_002211684.1\|3466390_3467296_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211685.1\|3467493_3468363_+	pirin family protein	NA	NA	NA	NA
WP_002216508.1\|3468627_3469830_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	7.6e-29	29.1
WP_002211686.1\|3469845_3471150_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_012229676.1\|3471614_3473150_+	SpoVR family protein	NA	NA	NA	NA
WP_002211688.1\|3473367_3474087_-	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_012229677.1\|3474330_3475899_+	sodium/proton antiporter NhaB	NA	NA	NA	NA
WP_002227934.1\|3476134_3476665_+	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_002214494.1\|3477081_3477438_-	hypothetical protein	NA	NA	NA	NA
WP_002211692.1\|3478529_3479270_+	hypothetical protein	NA	NA	NA	NA
WP_002211693.1\|3479286_3480486_+	cysteine desulfurase	A0A1X7QGF3	Faustovirus	2.4e-38	29.6
WP_002214492.1\|3480489_3481662_+	MFS transporter	NA	NA	NA	NA
3481746:3481776	attL	NA	NA	NA	NA
WP_097608205.1\|3483396_3483765_-\|tail	phage tail protein	B6SCW7	Bacteriophage	5.0e-08	42.0
WP_002211696.1\|3483826_3484744_-	hypothetical protein	NA	NA	NA	NA
WP_002211697.1\|3484760_3485759_-	hypothetical protein	NA	NA	NA	NA
WP_002211698.1\|3485758_3488962_-	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	60.5
WP_002211700.1\|3489533_3490154_-\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	3.2e-55	57.0
WP_002211701.1\|3490209_3490425_-	hypothetical protein	NA	NA	NA	NA
WP_002214482.1\|3490567_3491119_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	9.5e-27	58.0
WP_002211704.1\|3491217_3492225_-	hypothetical protein	A0A2H4J0P1	uncultured_Caudovirales_phage	4.1e-36	33.0
WP_002211705.1\|3492298_3492466_-	hypothetical protein	G9L6D7	Escherichia_phage	5.2e-13	61.8
WP_002211706.1\|3492589_3493021_+	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	2.5e-30	58.4
WP_002211708.1\|3493978_3494689_-	peptidase P60	K7P6F5	Enterobacteria_phage	1.3e-108	76.8
WP_002211709.1\|3494691_3495444_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	9.4e-102	67.7
WP_041854760.1\|3495563_3496022_-\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5REW8	Helicobacter_phage	1.7e-08	24.1
WP_002210985.1\|3496939_3497914_+	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA
WP_002210987.1\|3499105_3500722_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002227906.1\|3500964_3501948_+	zinc transporter ZntB	NA	NA	NA	NA
WP_001297096.1\|3502209_3502989_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|3502988_3504011_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002211738.1\|3504080_3505319_+\|integrase	site-specific integrase	Q20GI2	Phage_258-320	2.3e-121	53.3
3505345:3505375	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3640382 : 3700308

Escherichia_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042666698.1\|3640382_3641405_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	5.4e-201	99.7
WP_002210983.1\|3642258_3643836_-	transcriptional regulator TyrR	NA	NA	NA	NA
WP_012229742.1\|3644171_3644618_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_002210981.1\|3644696_3645155_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_002210980.1\|3645164_3646226_-	TIGR01620 family protein	NA	NA	NA	NA
WP_002210979.1\|3646222_3647620_-	YcjX family protein	NA	NA	NA	NA
WP_002216375.1\|3647600_3647843_-	phage shock protein PspD	NA	NA	NA	NA
WP_002210977.1\|3647927_3648287_-	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_002210976.1\|3648286_3648514_-	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_002210975.1\|3648675_3649341_-	phage shock protein PspA	NA	NA	NA	NA
WP_002210974.1\|3649585_3650614_+	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_002213775.1\|3650778_3651237_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_012229746.1\|3651901_3653548_+	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_002210972.1\|3653544_3654510_+	peptide ABC transporter permease SapB	NA	NA	NA	NA
WP_002210971.1\|3654496_3655387_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_002210970.1\|3655386_3656379_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	8.8e-07	25.3
WP_012229750.1\|3656378_3657194_+	peptide ABC transporter ATP-binding protein SapF	G9BWD6	Planktothrix_phage	6.5e-16	30.9
WP_012229752.1\|3657583_3658864_+	CMD domain-containing protein	NA	NA	NA	NA
WP_002215910.1\|3659506_3661012_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_002210965.1\|3661266_3661857_+	YIP1 family protein	NA	NA	NA	NA
WP_012229762.1\|3662102_3662351_+	DUF3811 domain-containing protein	NA	NA	NA	NA
WP_002209743.1\|3662412_3663621_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210962.1\|3663933_3664539_+	glutathione transferase GstA	NA	NA	NA	NA
WP_002210960.1\|3665612_3666887_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	3.0e-84	42.4
WP_002210959.1\|3667068_3667722_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_002218323.1\|3667812_3668127_-	lipoprotein	NA	NA	NA	NA
WP_002218322.1\|3668184_3669297_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002210956.1\|3669852_3670320_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_002213759.1\|3670547_3671006_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210955.1\|3671173_3671605_-	virulence master transcriptional regulator RovA	NA	NA	NA	NA
WP_002210954.1\|3672402_3673299_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
WP_002210953.1\|3673430_3673670_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_002210952.1\|3673843_3675481_+	phosphoethanolamine transferase EptA	NA	NA	NA	NA
WP_002210951.1\|3675703_3676303_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_002210950.1\|3676390_3677488_+	alkene reductase	NA	NA	NA	NA
WP_012229765.1\|3677708_3680651_-	RHS repeat protein	NA	NA	NA	NA
WP_002210948.1\|3680923_3681331_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_002210947.1\|3681409_3682090_+	ribonuclease T	NA	NA	NA	NA
WP_087768161.1\|3682104_3682200_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002210946.1\|3682398_3682749_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_002210945.1\|3683188_3684040_+	hydrolase	A0A2H4PI41	Streptomyces_phage	2.8e-17	43.9
WP_002210944.1\|3684417_3684996_+	superoxide dismutase [Fe]	Q56AR7	Bacillus_thuringiensis_phage	4.4e-43	45.6
WP_002216285.1\|3685099_3685189_-	YnhF family membrane protein	NA	NA	NA	NA
WP_002210943.1\|3685522_3686548_+	HTH-type transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	5.9e-30	31.4
WP_002210942.1\|3686636_3687569_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012229766.1\|3687858_3689061_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	4.1e-14	23.2
WP_012229767.1\|3689540_3690692_+	cyclopropane fatty acyl phospholipid synthase	A0A2K9L4K8	Tupanvirus	9.4e-85	46.0
WP_002210939.1\|3691454_3692111_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	1.1e-21	34.7
WP_002210938.1\|3692155_3692347_+	hypothetical protein	NA	NA	NA	NA
WP_002210937.1\|3692359_3693733_+	MATE family efflux transporter	NA	NA	NA	NA
WP_002210936.1\|3694763_3696176_+	pyruvate kinase PykF	NA	NA	NA	NA
WP_002227902.1\|3696496_3696733_+	major outer membrane lipoprotein	NA	NA	NA	NA
WP_002213759.1\|3696923_3697382_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_001618661.1\|3699285_3700308_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	2.0e-200	99.7

DBSCAN-SWA_12

3714719 : 3781399

Tupanvirus(22.22%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213759.1\|3714719_3715178_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211813.1\|3715516_3717901_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	4.1e-175	36.6
WP_002211815.1\|3719228_3720275_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B5IW14	Pandoravirus	3.2e-84	49.0
WP_002211816.1\|3721958_3722975_-	lipoate--protein ligase A	NA	NA	NA	NA
WP_002216102.1\|3723099_3723564_-	lipoprotein	A0A217EQL1	Bacillus_phage	8.9e-10	37.0
WP_002211818.1\|3723504_3723687_+	hypothetical protein	NA	NA	NA	NA
WP_002211819.1\|3723843_3724230_-	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF	NA	NA	NA	NA
WP_002211820.1\|3724226_3724571_-	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE	NA	NA	NA	NA
WP_002211821.1\|3724567_3726232_-	lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase	NA	NA	NA	NA
WP_002211822.1\|3726228_3727134_-	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase	NA	NA	NA	NA
WP_002211823.1\|3727130_3729134_-	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	1.7e-17	24.6
WP_002211824.1\|3729130_3730114_-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	A8CG95	Salmonella_phage	6.9e-36	33.2
WP_002211825.1\|3730100_3731255_-	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L470	Tupanvirus	8.3e-33	28.8
WP_002213775.1\|3731783_3732242_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_012229772.1\|3732329_3733073_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A1M7XV31	Cedratvirus	9.2e-09	28.5
WP_002211827.1\|3733097_3733652_-	glutathione peroxidase	NA	NA	NA	NA
WP_002220283.1\|3733721_3734729_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_002211829.1\|3734955_3735414_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_002213759.1\|3735813_3736272_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211830.1\|3736460_3736757_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.2e-13	40.0
WP_002211831.1\|3736761_3739149_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002211832.1\|3739162_3740146_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.6e-35	38.5
WP_152328947.1\|3740502_3740550_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_002211833.1\|3740644_3741001_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_002211834.1\|3741038_3741236_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_002227898.1\|3741332_3741884_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_002211836.1\|3741887_3743816_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-127	37.1
WP_002216696.1\|3744206_3744419_+	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	9.9e-09	42.0
WP_002211839.1\|3745177_3745429_-	hypothetical protein	NA	NA	NA	NA
WP_002211840.1\|3745747_3746431_+	MarC family NAAT transporter	NA	NA	NA	NA
WP_002216686.1\|3746552_3747215_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_002211842.1\|3747426_3748395_+	iron/manganese ABC transporter substrate-binding protein YfeA	NA	NA	NA	NA
WP_002211843.1\|3748391_3749282_+	iron/manganese ABC transporter ATP-binding protein YfeB	A0A1V0SKJ1	Klosneuvirus	2.9e-09	27.5
WP_002211844.1\|3749281_3750166_+	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA
WP_002211845.1\|3750162_3751056_+	iron/manganese ABC transporter permease subunit YfeD	NA	NA	NA	NA
WP_002216683.1\|3751123_3751336_+	hypothetical protein	NA	NA	NA	NA
WP_002211846.1\|3751360_3752236_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_002211847.1\|3752364_3752919_-	yfeABCD regulator yfeE	NA	NA	NA	NA
WP_002209743.1\|3754231_3755440_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210828.1\|3755487_3755838_-	cupin domain-containing protein	NA	NA	NA	NA
WP_002210829.1\|3756172_3757009_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_002210830.1\|3757100_3757862_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-20	32.9
WP_012229773.1\|3758190_3759858_+	pectate disaccharide-lyase	NA	NA	NA	NA
WP_012229774.1\|3759898_3760789_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_002210833.1\|3760781_3761702_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_002210834.1\|3761715_3762843_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.6e-12	26.5
WP_012229775.1\|3762858_3764151_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210836.1\|3764448_3765159_+	porin	NA	NA	NA	NA
WP_002210837.1\|3765638_3766187_+	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	4.0e-09	32.9
WP_012229776.1\|3766390_3767782_+	L-cystine transporter	NA	NA	NA	NA
WP_002210839.1\|3767996_3768848_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.3e-11	28.8
WP_012229777.1\|3769214_3770006_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_002210841.1\|3770192_3771359_-	oligogalacturonate lyase	NA	NA	NA	NA
WP_002210842.1\|3771666_3773034_+	MFS transporter	NA	NA	NA	NA
WP_002210843.1\|3773087_3773891_-	molecular chaperone	NA	NA	NA	NA
WP_002215120.1\|3773887_3775051_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_002215118.1\|3777674_3778454_-	fimbrial chaperone	NA	NA	NA	NA
WP_002210846.1\|3778606_3779149_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_002213759.1\|3779803_3780262_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210847.1\|3780517_3781399_-\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_13

4074079 : 4158659

Yellowstone_lake_phycodnavirus(22.22%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|4074079_4074538_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002424260.1\|4074736_4075261_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002228103.1\|4075233_4076961_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	7.8e-59	29.4
WP_002216437.1\|4077420_4079226_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	3.5e-38	23.2
WP_002216434.1\|4079752_4080709_-	transcriptional regulator LeuO	NA	NA	NA	NA
WP_002210452.1\|4081386_4081602_+	hypothetical protein	NA	NA	NA	NA
WP_002213775.1\|4082030_4082489_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210453.1\|4082635_4084198_+	2-isopropylmalate synthase	NA	NA	NA	NA
WP_002210454.1\|4084200_4085292_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_002210455.1\|4085293_4086724_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_002210456.1\|4086738_4087341_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_002224086.1\|4087581_4088763_-	MFS transporter	NA	NA	NA	NA
WP_002210461.1\|4089426_4091088_+	HTH-type transcriptional regulator SgrR	NA	NA	NA	NA
WP_002214274.1\|4092027_4093020_+	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA
WP_002214276.1\|4092995_4094603_+	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA
WP_002210464.1\|4094589_4095300_+	thiamine ABC transporter ATP-binding protein ThiQ	G3M9Y6	Bacillus_virus	1.0e-20	34.1
WP_002210465.1\|4095368_4096136_-	DedA family protein	NA	NA	NA	NA
WP_002210466.1\|4096331_4098701_+	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	1.5e-31	25.5
WP_002220588.1\|4099125_4102032_+	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	3.0e-23	37.6
WP_002213759.1\|4102413_4102872_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210468.1\|4102998_4103352_-	hypothetical protein	NA	NA	NA	NA
WP_012229833.1\|4106876_4108484_-	OmpA family protein	NA	NA	NA	NA
WP_002210471.1\|4109945_4110437_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002214737.1\|4110429_4110795_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_002210473.1\|4110800_4111418_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_002214739.1\|4111410_4112514_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002224087.1\|4112539_4114759_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_001297096.1\|4117793_4118573_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002213039.1\|4119367_4121785_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002213038.1\|4121938_4122685_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.3e-14	31.4
WP_002213036.1\|4123415_4123634_+	hypothetical protein	NA	NA	NA	NA
WP_002231245.1\|4123998_4124421_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_012229841.1\|4124410_4125694_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_002213030.1\|4125695_4126433_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_041854810.1\|4126458_4127688_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_002213026.1\|4127680_4128400_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012229846.1\|4128401_4129154_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_002213024.1\|4129156_4129945_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002228570.1\|4130031_4130472_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_002213017.1\|4130509_4130758_+	acyl carrier protein	NA	NA	NA	NA
WP_002213016.1\|4130856_4131705_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_012229852.1\|4132693_4133194_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_079993216.1\|4133236_4134232_+	hypothetical protein	NA	NA	NA	NA
WP_041854755.1\|4134231_4135968_+	OmpA family protein	NA	NA	NA	NA
WP_012228903.1\|4135971_4136463_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002211927.1\|4136850_4139493_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.6e-92	31.6
WP_012229857.1\|4139495_4141844_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.5e-17	32.1
WP_002214564.1\|4144141_4144612_+	hypothetical protein	NA	NA	NA	NA
WP_002211935.1\|4146776_4148009_+	hypothetical protein	NA	NA	NA	NA
WP_012229859.1\|4148005_4151428_+	type VI secretion system membrane subunit	NA	NA	NA	NA
WP_002211937.1\|4151470_4153072_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_002211938.1\|4153089_4154148_+	PAAR domain protein	NA	NA	NA	NA
WP_002211939.1\|4154162_4154618_+	hypothetical protein	NA	NA	NA	NA
WP_012229860.1\|4154838_4156602_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002211941.1\|4156565_4157651_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002214552.1\|4157625_4158207_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002211943.1\|4158206_4158659_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_14

4170402 : 4223310

Bacillus_phage(20.0%)

transposase,protease,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209743.1\|4170402_4171611_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002227980.1\|4173711_4173924_-	peptide antibiotic darobactin C	NA	NA	NA	NA
WP_002211956.1\|4174180_4175023_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_002224699.1\|4175043_4176183_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	6.1e-36	30.2
WP_002211958.1\|4176456_4177326_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211960.1\|4178566_4179229_+	GTP cyclohydrolase I FolE	R9TJA5	Vibrio_phage	5.8e-55	53.5
WP_012229866.1\|4179283_4180450_+	DUF418 family protein	NA	NA	NA	NA
WP_002211963.1\|4181197_4182190_+	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_002211964.1\|4182419_4183940_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	2.6e-10	29.9
WP_012229868.1\|4183960_4184971_+	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_002213759.1\|4185192_4185651_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211966.1\|4186091_4186829_-	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_002211969.1\|4189149_4190034_-	cytidine deaminase	NA	NA	NA	NA
WP_002211970.1\|4190359_4191055_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_002211971.1\|4191051_4191459_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_002211973.1\|4191700_4192882_-	MFS transporter	NA	NA	NA	NA
WP_002211974.1\|4193195_4194449_-	hypothetical protein	NA	NA	NA	NA
WP_002211975.1\|4194466_4195543_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002228565.1\|4196240_4196903_+	hypothetical protein	NA	NA	NA	NA
WP_002213775.1\|4197120_4197579_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002208618.1\|4198092_4198236_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_002208619.1\|4199109_4199463_+	hypothetical protein	NA	NA	NA	NA
WP_002218472.1\|4199621_4199990_+	Hha toxicity modulator TomB	NA	NA	NA	NA
WP_002208622.1\|4200038_4200242_+	expression modulating protein YmoA	NA	NA	NA	NA
WP_002208623.1\|4201129_4201519_+	MGMT family protein	NA	NA	NA	NA
WP_002208625.1\|4202373_4203234_+	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_002228344.1\|4203493_4204783_-	ammonium transporter AmtB	NA	NA	NA	NA
WP_002208627.1\|4204822_4205161_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_002208628.1\|4205562_4207386_-	SmdB family multidrug efflux ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	2.5e-39	27.3
WP_002208629.1\|4207378_4209145_-	SmdA family multidrug ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	7.0e-47	28.3
WP_002208630.1\|4209246_4209708_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_002208631.1\|4209833_4210874_+	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
WP_002208632.1\|4211085_4211907_-	HMP-PP phosphatase	NA	NA	NA	NA
WP_002208633.1\|4212011_4213715_+	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_002208635.1\|4213971_4214670_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.1e-87	70.5
WP_012229871.1\|4214755_4215163_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_002208637.1\|4215516_4215963_-	ComEA family DNA-binding protein	NA	NA	NA	NA
WP_002208638.1\|4216102_4217989_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_002213759.1\|4218286_4218745_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002208639.1\|4218999_4219272_-	DNA-binding protein HU-beta	A4JWM7	Burkholderia_virus	3.5e-22	59.6
WP_012229872.1\|4219489_4221844_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	5.9e-227	52.9
WP_002208641.1\|4222038_4223310_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.3e-131	56.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009934

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 95031

Salmonella_phage(76.71%)

tail,transposase,integrase,terminase

attL 21663:21722|attR 75380:76091

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000952684.1\|181_406_+	hypothetical protein	J9Q7F7	Salmonella_phage	4.2e-34	100.0
WP_012228764.1\|413_4979_+	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	89.9
WP_000440566.1\|5020_5356_+\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_011901831.1\|5445_6144_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	6.4e-137	99.6
WP_002211774.1\|6136_6934_+\|tail	tail protein	J9Q7R4	Salmonella_phage	1.4e-156	96.2
WP_002211773.1\|6921_7509_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	5.1e-103	92.8
WP_002214118.1\|7530_12162_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	88.6
WP_002211771.1\|12218_12797_+	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	3.4e-27	38.8
WP_012228802.1\|12877_15766_+\|tail	phage tail protein	J9Q6E3	Salmonella_phage	4.5e-11	33.1
WP_002211769.1\|16067_16676_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.8e-64	62.2
WP_071882744.1\|16809_17415_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	5.1e-98	99.5
WP_042593479.1\|17356_18283_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-179	99.7
WP_002213132.1\|18946_19975_-	hypothetical protein	J9Q7Z3	Salmonella_phage	1.3e-165	98.5
WP_002213135.1\|20094_20526_-	hypothetical protein	J9Q6I8	Salmonella_phage	2.6e-72	98.6
WP_002215095.1\|20746_20998_+	hypothetical protein	NA	NA	NA	NA
WP_012228774.1\|21070_21634_+	DNA-binding protein	J9Q7G7	Salmonella_phage	2.2e-63	64.6
21663:21722	attL	NA	NA	NA	NA
WP_002213759.1\|21807_22266_+\|transposase	IS200/IS605-like element IS1541A family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002425587.1\|22374_22800_-	hypothetical protein	J9Q7S4	Salmonella_phage	7.5e-72	100.0
WP_012228814.1\|22814_26339_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.0
WP_002211767.1\|26519_27755_-	AAA domain-containing protein	J9Q733	Salmonella_phage	3.0e-238	99.3
WP_002211766.1\|27851_30218_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	94.4
WP_002228800.1\|30327_30540_-	hypothetical protein	NA	NA	NA	NA
WP_002228802.1\|30802_31189_+	hypothetical protein	NA	NA	NA	NA
WP_041854749.1\|31183_32287_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	5.2e-24	30.9
WP_002209743.1\|32759_33968_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211760.1\|34436_35459_+\|transposase	IS110-like element IS1618 family transposase	NA	NA	NA	NA
WP_002211758.1\|37522_39286_-	phospholipase D	NA	NA	NA	NA
WP_002211757.1\|39363_39852_-	phospholipase D family protein	NA	NA	NA	NA
WP_002211756.1\|40590_40866_+	hypothetical protein	NA	NA	NA	NA
WP_012228784.1\|40888_41830_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.9e-68	54.4
WP_002211754.1\|41895_42516_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	6.5e-08	31.1
WP_002215068.1\|42715_43042_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002211753.1\|43041_43269_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_002211752.1\|43570_44776_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
WP_002215070.1\|44772_45744_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.5e-112	67.3
WP_002228775.1\|46122_47520_+	AAA family ATPase	NA	NA	NA	NA
WP_002211750.1\|47681_47882_-	hypothetical protein	NA	NA	NA	NA
WP_012228803.1\|48382_49060_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.9
WP_002211748.1\|49059_49281_+	hypothetical protein	NA	NA	NA	NA
WP_002215082.1\|49291_49711_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_002211747.1\|49764_50544_+	hypothetical protein	NA	NA	NA	NA
WP_002211746.1\|50942_51449_+	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	1.1e-08	29.5
WP_002211745.1\|52161_52392_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_012228783.1\|52464_54474_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.3e-25	30.1
WP_000255944.1\|54597_55620_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|55619_56399_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000920226.1\|56897_57164_+	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_161597819.1\|57211_58243_+	recombinase	J9Q736	Salmonella_phage	6.9e-196	99.1
WP_002213303.1\|60697_61444_-	hypothetical protein	J9Q6J5	Salmonella_phage	4.1e-134	96.4
WP_038918515.1\|61433_61793_-	hypothetical protein	J9Q741	Salmonella_phage	5.2e-58	100.0
WP_002213300.1\|63579_64665_-	exonuclease	J9Q7S9	Salmonella_phage	7.7e-206	98.6
WP_002214160.1\|66463_67108_-	hypothetical protein	J9Q739	Salmonella_phage	1.8e-122	98.1
WP_012228763.1\|67862_68927_+	replication protein RepA	J9Q7H0	Salmonella_phage	5.4e-188	98.3
WP_002222711.1\|69495_69708_-	hypothetical protein	J9Q7S8	Salmonella_phage	6.8e-34	95.7
WP_002227818.1\|69707_70043_-	hypothetical protein	J9Q7Z5	Salmonella_phage	5.2e-52	91.0
WP_002228796.1\|70039_70219_-	hypothetical protein	J9Q6J1	Salmonella_phage	5.8e-18	86.4
WP_002228797.1\|70259_70535_-	hypothetical protein	J9Q738	Salmonella_phage	1.7e-45	95.6
WP_002222869.1\|70602_71013_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.1e-75	97.8
WP_002222868.1\|70996_71368_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	4.0e-61	87.8
WP_002222866.1\|71521_72352_-	hypothetical protein	J9Q7Z4	Salmonella_phage	9.3e-127	98.6
WP_002231164.1\|73189_74332_+	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	1.7e-219	100.0
WP_011901832.1\|74530_75286_+	hypothetical protein	J9Q742	Salmonella_phage	3.8e-135	98.4
WP_002213759.1\|75524_75983_+\|transposase	IS200/IS605-like element IS1541A family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002211802.1\|76182_76464_+	hypothetical protein	J9Q753	Salmonella_phage	6.1e-46	93.5
75380:76091	attR	NA	NA	NA	NA
WP_002211801.1\|76669_77152_+	hypothetical protein	J9Q805	Salmonella_phage	5.1e-85	94.4
WP_002214137.1\|77790_78018_-	hypothetical protein	NA	NA	NA	NA
WP_002211799.1\|78102_78753_-	hypothetical protein	J9Q754	Salmonella_phage	4.1e-114	99.5
WP_002214134.1\|79075_79603_-	transcriptional regulator	J9Q6L0	Salmonella_phage	6.4e-81	98.0
WP_002211796.1\|79607_80030_-	hypothetical protein	J9Q806	Salmonella_phage	4.1e-62	85.0
WP_002214131.1\|80089_80368_-	hypothetical protein	J9Q7T9	Salmonella_phage	4.4e-41	97.8
WP_012228815.1\|80370_81930_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	1.4e-293	98.8
WP_002418921.1\|82039_82693_+	ParB/RepB/Spo0J family partition protein	J9Q756	Salmonella_phage	6.9e-117	98.6
WP_002211792.1\|82692_83361_+	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	9.5e-114	98.2
WP_002211791.1\|83357_83996_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	4.7e-110	98.1
WP_002211790.1\|83988_84243_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	97.6
WP_002211789.1\|84248_85139_+	hypothetical protein	J9Q7I6	Salmonella_phage	6.2e-169	99.7
WP_000176291.1\|85148_85415_+	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_002211788.1\|85610_86252_+	hypothetical protein	J9Q6D4	Salmonella_phage	1.2e-108	98.1
WP_002211787.1\|86254_87511_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_012228810.1\|87544_89119_+	hypothetical protein	J9Q7R1	Salmonella_phage	9.2e-301	99.0
WP_002231160.1\|89141_90038_+	hypothetical protein	J9Q7F4	Salmonella_phage	3.9e-147	96.3
WP_012228823.1\|90064_90871_+	hypothetical protein	J9Q710	Salmonella_phage	5.6e-145	91.4
WP_002211783.1\|90945_91608_+	Ig domain-containing protein	J9Q6D6	Salmonella_phage	8.5e-107	97.2
WP_002211782.1\|91651_92086_+	hypothetical protein	J9Q7Y3	Salmonella_phage	3.1e-73	99.3
WP_002211781.1\|92085_92919_+	hypothetical protein	J9Q7R2	Salmonella_phage	2.9e-152	99.6
WP_001027662.1\|93016_93361_+	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_002211780.1\|93351_93825_+	hypothetical protein	J9Q711	Salmonella_phage	8.9e-82	99.4
WP_002211779.1\|93826_94210_+	hypothetical protein	J9Q6D8	Salmonella_phage	1.1e-66	98.4
WP_002211778.1\|94284_95031_+	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	5.2e-129	98.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009935

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009934

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection