CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010906	Campylobacter jejuni subsp. jejuni strain 35925, complete genome	1 crisprs	DEDDh,WYL,cas2,cas1,cas9,csa3	0	4	1	0

1. NZ_CP010906

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010906_1

• CRISPR_ID: NZ_CP010906_1
• CRISPR_location: 1428961-1429260
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 4 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NZ_CP010906_1

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT

spacers of NZ_CP010906_1

>1.1|1428997|30|NZ_CP010906|CRT
CCTTCAAGTCGTGCAATTTTAATACACTGG
>1.2|1429063|30|NZ_CP010906|CRT
GTATCAGCTATAGATCTATCAGAATTTACA
>1.3|1429129|30|NZ_CP010906|CRT
CCTTCAAGTCGTGCAATTTTAATACACTGG
>1.4|1429195|30|NZ_CP010906|CRT
AATTTTAATACACTGGGGAAACGTTGATAA

CRISPR arrays and Neighbor proteins around NZ_CP010906_1

CRISPR arrays

The CRISPR arrays of NZ_CP010906_1

>merge|NZ_CP010906|1|1428961-1429260|CRT
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCCTTCAAGTCGTGCAATTTTAATACACTGGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGTATCAGCTATAGATCTATCAGAATTTACAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCCTTCAAGTCGTGCAATTTTAATACACTGGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAATTTTAATACACTGGGGAAACGTTGATAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP010906|1|1|1428961-1429260|CRT
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCTTCAAGTCGTGCAATTTTAATACACTGG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GTATCAGCTATAGATCTATCAGAATTTACA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCTTCAAGTCGTGCAATTTTAATACACTGG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AATTTTAATACACTGGGGAAACGTTGATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010906.1|WP_044306273.1|1418609_1419542_-|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl|CDD|130645
NZ_CP010906.1|WP_002862162.1|1422980_1423172_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|239247
NZ_CP010906.1|WP_044306276.1|1427652_1428843_+|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|223380
NZ_CP010906.1|WP_079005335.1|1423146_1423860_-|hypothetical-protein	unknown	unknown	gnl|CDD|225916
NZ_CP010906.1|WP_002779488.1|1426980_1427202_+|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|224888
NZ_CP010906.1|WP_044306277.1|1429404_1429836_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_CP010906.1|WP_044306282.1|1437726_1438458_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl|CDD|225539
NZ_CP010906.1|WP_002851264.1|1419538_1420180_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NZ_CP010906.1|WP_022552433.1|1420176_1422981_-|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl|CDD|239153
NZ_CP010906.1|WP_002936775.1|1427202_1427649_+|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|223391
NZ_CP010906.1|WP_044306275.1|1425437_1426979_+|multicopper-oxidase-CueO	unknown	unknown	gnl|CDD|225043
NZ_CP010906.1|WP_044306278.1|1429828_1430719_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NZ_CP010906.1|WP_044306274.1|1424163_1425312_-|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NZ_CP010906.1|WP_044306280.1|1433875_1435330_+|anaerobic-C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl|CDD|225611
NZ_CP010906.1|WP_044306279.1|1430705_1433669_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226044
NZ_CP010906.1|WP_002855427.1|1435350_1436340_-|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NZ_CP010906.1|WP_002936802.1|1439556_1440006_-|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NZ_CP010906.1|WP_044306281.1|1437002_1437752_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_CP010906.1|WP_002892926.1|1438454_1439492_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
NZ_CP010906.1|WP_002936789.1|1436400_1437006_+|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP010906.1|WP_044306278.1|1429828_1430719_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	3.9e-98	322.7	11.0
NZ_CP010906.1|WP_044306277.1|1429404_1429836_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	4.6e-59	192.5	1.9
NZ_CP010906.1|WP_044306279.1|1430705_1433669_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	0	1161.2	71.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP010906.1|WP_044306273.1|1418609_1419542_-|formate-dehydrogenase-subunit-gamma	gnl|CDD|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.50857e-86
NZ_CP010906.1|WP_002862162.1|1422980_1423172_-|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|239247	cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.	0.0054266
NZ_CP010906.1|WP_044306276.1|1427652_1428843_+|molybdopterin-molybdotransferase-MoeA	gnl|CDD|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.65341e-143
NZ_CP010906.1|WP_079005335.1|1423146_1423860_-|hypothetical-protein	gnl|CDD|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000778983
NZ_CP010906.1|WP_002779488.1|1426980_1427202_+|MoaD/ThiS-family-protein	gnl|CDD|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP010906.1|WP_044306277.1|1429404_1429836_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.38481e-58
NZ_CP010906.1|WP_044306282.1|1437726_1438458_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl|CDD|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	5.68699e-101
NZ_CP010906.1|WP_002851264.1|1419538_1420180_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP010906.1|WP_022552433.1|1420176_1422981_-|formate-dehydrogenase-subunit-alpha	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP010906.1|WP_002936775.1|1427202_1427649_+|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	3.65018e-42
NZ_CP010906.1|WP_044306275.1|1425437_1426979_+|multicopper-oxidase-CueO	gnl|CDD|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.16915e-120
NZ_CP010906.1|WP_044306278.1|1429828_1430719_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	5.24164e-120
NZ_CP010906.1|WP_044306274.1|1424163_1425312_-|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP010906.1|WP_044306280.1|1433875_1435330_+|anaerobic-C4-dicarboxylate-transporter-DcuC	gnl|CDD|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	7.97176e-72
NZ_CP010906.1|WP_044306279.1|1430705_1433669_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP010906.1|WP_002855427.1|1435350_1436340_-|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP010906.1|WP_002936802.1|1439556_1440006_-|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.17285e-51
NZ_CP010906.1|WP_044306281.1|1437002_1437752_+|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.86247e-92
NZ_CP010906.1|WP_002892926.1|1438454_1439492_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.59631e-33
NZ_CP010906.1|WP_002936789.1|1436400_1437006_+|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	4.17691e-71

Protein sequences

>NZ_CP010906.1|WP_044306276.1|1427652_1428843_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPHFSVQNGTCVKTFTGSLMSEGSDTLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP010906.1|WP_002936775.1|1427202_1427649_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNKFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP010906.1|WP_002779488.1|1426980_1427202_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP010906.1|WP_044306275.1|1425437_1426979_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFKLESSYYDRDKMMVKEEPNTLFLANINLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINDKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP010906.1|WP_044306274.1|1424163_1425312_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASIGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIIFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLRN
>NZ_CP010906.1|WP_079005335.1|1423146_1423860_-|hypothetical-protein
MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP010906.1|WP_002862162.1|1422980_1423172_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDKERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP010906.1|WP_022552433.1|1420176_1422981_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAYYVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP010906.1|WP_002851264.1|1419538_1420180_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP010906.1|WP_044306273.1|1418609_1419542_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVEI
>NZ_CP010906.1|WP_044306277.1|1429404_1429836_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGRIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP010906.1|WP_044306278.1|1429828_1430719_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVVAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNAFALCDDLIEVFRASVDDCVLKLKGESEFLNKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP010906.1|WP_044306279.1|1430705_1433669_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLNKQDFARVILHIAKRRGYDDIKNSDDEEKGKILKAIKQNEEKLVNYQSVGEYLYKEYFQKFKENSKEFINVRNKKESYERCIAQSFLKDELKLIFQKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALDEHSLSQDDLNEIAKDITLIKDETKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKILNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMPEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLTKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKNELR
>NZ_CP010906.1|WP_044306280.1|1433875_1435330_+|anaerobic-C4-dicarboxylate-transporter-DcuC
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYILFPWLPVVFLFTAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLGVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTNPLPKEQNTTKIELKIQK
>NZ_CP010906.1|WP_002855427.1|1435350_1436340_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP010906.1|WP_002936789.1|1436400_1437006_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLTKENKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP010906.1|WP_044306281.1|1437002_1437752_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAKVNQDKVEASLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFS
>NZ_CP010906.1|WP_044306282.1|1437726_1438458_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRISNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP010906.1|WP_002892926.1|1438454_1439492_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>NZ_CP010906.1|WP_002936802.1|1439556_1440006_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGTCKM

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010906_1	1.1|1428997|30|NZ_CP010906|CRT	1428997-1429026	30	KF751797	Campylobacter phage CJIE4-5, complete genome	13919-13948	0	1.0
NZ_CP010906_1	1.1|1428997|30|NZ_CP010906|CRT	1428997-1429026	30	KF751793	Campylobacter phage CJIE4-1, complete genome	14946-14975	0	1.0
NZ_CP010906_1	1.2|1429063|30|NZ_CP010906|CRT	1429063-1429092	30	NZ_CP038864	Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence	1328-1357	0	1.0
NZ_CP010906_1	1.3|1429129|30|NZ_CP010906|CRT	1429129-1429158	30	KF751797	Campylobacter phage CJIE4-5, complete genome	13919-13948	0	1.0
NZ_CP010906_1	1.3|1429129|30|NZ_CP010906|CRT	1429129-1429158	30	KF751793	Campylobacter phage CJIE4-1, complete genome	14946-14975	0	1.0
NZ_CP010906_1	1.1|1428997|30|NZ_CP010906|CRT	1428997-1429026	30	MN530981	Campylobacter phage DA10, complete genome	33579-33608	1	0.967
NZ_CP010906_1	1.1|1428997|30|NZ_CP010906|CRT	1428997-1429026	30	KF751794	Campylobacter phage CJIE4-2, complete genome	13669-13698	1	0.967
NZ_CP010906_1	1.1|1428997|30|NZ_CP010906|CRT	1428997-1429026	30	KF751795	Campylobacter phage CJIE4-3, complete genome	11997-12026	1	0.967
NZ_CP010906_1	1.1|1428997|30|NZ_CP010906|CRT	1428997-1429026	30	KF751796	Campylobacter phage CJIE4-4, complete genome	12035-12064	1	0.967
NZ_CP010906_1	1.3|1429129|30|NZ_CP010906|CRT	1429129-1429158	30	MN530981	Campylobacter phage DA10, complete genome	33579-33608	1	0.967
NZ_CP010906_1	1.3|1429129|30|NZ_CP010906|CRT	1429129-1429158	30	KF751794	Campylobacter phage CJIE4-2, complete genome	13669-13698	1	0.967
NZ_CP010906_1	1.3|1429129|30|NZ_CP010906|CRT	1429129-1429158	30	KF751795	Campylobacter phage CJIE4-3, complete genome	11997-12026	1	0.967
NZ_CP010906_1	1.3|1429129|30|NZ_CP010906|CRT	1429129-1429158	30	KF751796	Campylobacter phage CJIE4-4, complete genome	12035-12064	1	0.967
NZ_CP010906_1	1.4|1429195|30|NZ_CP010906|CRT	1429195-1429224	30	KF751794	Campylobacter phage CJIE4-2, complete genome	13655-13684	2	0.933
NZ_CP010906_1	1.4|1429195|30|NZ_CP010906|CRT	1429195-1429224	30	KF751795	Campylobacter phage CJIE4-3, complete genome	11983-12012	2	0.933
NZ_CP010906_1	1.4|1429195|30|NZ_CP010906|CRT	1429195-1429224	30	KF751796	Campylobacter phage CJIE4-4, complete genome	12021-12050	2	0.933
NZ_CP010906_1	1.1|1428997|30|NZ_CP010906|CRT	1428997-1429026	30	MN693024	Marine virus AFVG_117M49, complete genome	7901-7930	9	0.7
NZ_CP010906_1	1.3|1429129|30|NZ_CP010906|CRT	1429129-1429158	30	MN693024	Marine virus AFVG_117M49, complete genome	7901-7930	9	0.7

1. spacer 1.1|1428997|30|NZ_CP010906|CRT matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 0, identity: 1.0

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
******************************

2. spacer 1.1|1428997|30|NZ_CP010906|CRT matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 0, identity: 1.0

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
******************************

3. spacer 1.2|1429063|30|NZ_CP010906|CRT matches to NZ_CP038864 (Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

gtatcagctatagatctatcagaatttaca	CRISPR spacer
gtatcagctatagatctatcagaatttaca	Protospacer
******************************

4. spacer 1.3|1429129|30|NZ_CP010906|CRT matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 0, identity: 1.0

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
******************************

5. spacer 1.3|1429129|30|NZ_CP010906|CRT matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 0, identity: 1.0

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
******************************

6. spacer 1.1|1428997|30|NZ_CP010906|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

7. spacer 1.1|1428997|30|NZ_CP010906|CRT matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

8. spacer 1.1|1428997|30|NZ_CP010906|CRT matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

9. spacer 1.1|1428997|30|NZ_CP010906|CRT matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

10. spacer 1.3|1429129|30|NZ_CP010906|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

11. spacer 1.3|1429129|30|NZ_CP010906|CRT matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

12. spacer 1.3|1429129|30|NZ_CP010906|CRT matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

13. spacer 1.3|1429129|30|NZ_CP010906|CRT matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

14. spacer 1.4|1429195|30|NZ_CP010906|CRT matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 2, identity: 0.933

aattttaatacactggggaaacgttgataa	CRISPR spacer
aattttaatacactggggaaacactgataa	Protospacer
**********************..******

15. spacer 1.4|1429195|30|NZ_CP010906|CRT matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 2, identity: 0.933

aattttaatacactggggaaacgttgataa	CRISPR spacer
aattttaatacactggggaaacactgataa	Protospacer
**********************..******

16. spacer 1.4|1429195|30|NZ_CP010906|CRT matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 2, identity: 0.933

aattttaatacactggggaaacgttgataa	CRISPR spacer
aattttaatacactggggaaacactgataa	Protospacer
**********************..******

17. spacer 1.1|1428997|30|NZ_CP010906|CRT matches to MN693024 (Marine virus AFVG_117M49, complete genome) position: , mismatch: 9, identity: 0.7

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgagcaattttaactttgcct	Protospacer
*********** **********. .  .  

18. spacer 1.3|1429129|30|NZ_CP010906|CRT matches to MN693024 (Marine virus AFVG_117M49, complete genome) position: , mismatch: 9, identity: 0.7

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgagcaattttaactttgcct	Protospacer
*********** **********. .  .  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1340385 : 1346455	7	Synechococcus_phage(28.57%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP010906|1340385:1346455|DBSCAN-SWA
TTTAAAAATGGCTTTGGTTGGTTATAAAATTATAATAATCCTCGGGCACACCAATATCTATAAAATAATCATCAAAAATTTCAGCCCTAGCCTTTAATTTTATATAATTTTCTTGTAAAAATTCTTCAAAAGAAAATTTTTTCTCTAAATCAAATTTATCAAAAATATCTTTTTTTAGTAAGTATATACCACCATTGATTAAACCTTGTTTTTTAAATACCTTTTCCTCAAAAGAAATTACAAGACATTGTTCATCAACATTTACTGTGCCATATCTATCAAAATCATTCATTTGTTTTAAAGCAAGGCAAATTTTACTTCTATTTAGCTTTAATTTGCTTAAATCTATGCCAAAAAAAGTATCGCCATTTAAAACATAAGCCTCGTTTTTTATAATTTTCAAAGCCTCTTTTATAGCTCCACCCGTTCCTAGAGGCTCTTTTTCTATACTGTATTTTATTTTTATGCCTAAAAACTCATCTTTAAAATACTCTTTTATCACTTCATATTTGTATGATACCGCTAAGATAACTTCTTTTATGCCTTGCTTTTTAAGATACTCAAAAATAAATTCTAAAAAAGGCTTATCATTTATCGGTGCCATAGGCTTTGGAATGTCTTTTATAACACTTTTAAGCCTTGTTCCTAAGCCGCCACAAAGTATTATTGCTTGCAAGAAAAACCTTTGCCAAAAAGCTCTTCTTCAACGATAGCACAAATAATATGTCCTATTAAAATATGTGCTTCTTGAATTCTTGGTGTGCAAGTTGAAGGTACTTTTATACAATAATCACAAAGCTCATTCATAGCCCCGCCATTAGCTCCGCTTAAGCCTATGCTTATGATTTCTTTTTGCTTGCAAAGCTCTAAAGCCTTTAAAATATTTTTACTATTTCCACTTGTAGAAATTCCTATAAAAACATCTCCTTTAACACCCTGTGCTTGCACTTGTCTTGCAAATAAATTTTCATAACCATAGTCATTGCCAATAGCTGTTAATATGCTAGTATCTGTAGTAAGTGCAATACTTGCGATACCGGGTCTATCAAAATAAAACCTACTTACAAATTCCCCTGCGATATGCTGTGCATCTGCAGCACTACCACCATTTCCTGCAAGTAAAGTTTTGTTACCATTTTTATAAGCTTTTATGACTTCTAATGAAGCATTTTTAATAAGAGTTATCAAATTCTCATCTTTTAAAATTTGCTCTTTTACTAAAATTGATTCTTGAAAATGTTCTTTTATATAAGAATTTAAATTCTCCATGATTTAACTCCCTCTTTTGTAAATGAAAAATCCTGCACATAACCTTGATCTTTGCTTAAAGCTTTGATTAAGTTGTATTTTTTAGTAGGATCTACAAAGAAAAACATAAATCCACCTGCTCCTGCTCCACTAGTTTTGCCACTATAAGCTCCATTTTGCATAGCTAAATAATAAATTCTTTCAAGCTCATCATTGCTAACGATTTCAGAAATGATTTTTTTTGACTGCCAAGATTTTCCTAAAATTTGTGCCAAAGTATCAAAATCTGCCTTAAATAAAGCTTCTTTCATCTTTATAGCATCTTGCTTTATAGCATGCATTGCCTCTAAAGACTTTTCATCTCCAAGCTTTCCTTTTTTATGCTCTTCTATATCTTTTGCTTCTCTTGTGATATTTGTAAAATAAAGCACAGTTCTAGCTTCAAGCTCACTAGCTATCCAGTTTTTAATACGCAAAGGATTGACAATGACTCTTTTATTATCATAAAATTCCATAAAATTAAAGCCACCAAAAGTTGCGGCGTATTGATCTTGTGCTCCACCTACTATACCTAAATCTTCTCTTTCTATCTCATAAGCAAGTTTAGCAATTTCATATTCTCCTAAAGGTAAATTAAGCCATTCTGCAAAGGCTTTTATAACCCCTACAACCAAAGTTGAGCTTCCGCCCAAGCCGCTACCACTTGGTACATCTGAATAAGTGTGCAAAGAAAAACTCAAAGGTTTTTTTGTAAAATCTTTTACAATACGATTATAAATGCTTTTAAAAATATCTAATTTTCCATCATTTTCTAAGAATTCTTTGCTTTCATACTCAGAGTAAGAATTTGTATCAGGCGAATCAAAAATGATTCTTCTATCTTCTCTTTCGATCAAAGTGCAATGTATATATAAAGATATAGTCGCATTTAAAACATAACCTGTGTATTTATCACAATATAAATTTATATCAGTCCCCCCACCTGCTAAACCAAGGCGGAGAGGAGTTTGCGTGCGTATGGTTTTCATCTATTCAACGGAATCCTTCCTTTTTTTATCTCATCTCTCCAATGGTTTAATAAATCTTCAAACATCTGTCTAGCTGGAATTTCTGGCTTCCAGCTGATATAGTTTTTGATTTTAGTATTGTCAAACATTTGATAGTCTGCATCAATAGGACGCAATCTTTGCTCATCTTGTTCTACTGTGATATCTTTTCTTGTAGAAAAACCTAAAAGTATATCAATAACCTCAGGAAGTTTAAAAACTTCTTCTCCTGCTATATTAAAAGCTTCACCGCAAGGAATTTTTCCTTTTTCACTTTCTAATGAAAGCAAATAATAAGCTCTTATCGCATCACGACAATCTTGAAAAGTTCTTACACTTGATAAATTTCCTACTTTGATAATAGGCTCTTGATAACCCGCTTCAATCAATGCGATTTGTTTTGCAACTGTACTTTCAAAAAACACATCACTTCTTCTTGGGCCACTATGAGTTCCCATTCTAGTAACATAAGTTTTTATACCATAAGCCTCACCGTAAAATCGTCCCAAATAATCCGTACCAATTTTACTTATACTATAAGGACTTGCACCATGAAAAGTTGTATCTTCATTTAGCTTCACACCTGCTTTTGCCCTACCATAAACTTCACTAGAAGAGCACACATGCACCACAGGATCATAACCATCTTTGGCTTTTAATAATCTGATATTTTCTAAAATATTTGCTGTACCTATGATATTTGTTTGTAAGGTTTCTATAGGTATATCAAAAGAGGTTTTTGGGTAAGACTGCGCGGCCAAATGAAAGATCACATCCGGTCTTTTGCTCTCAAAAAGCTTTTGAATACTTGAATAATCATTCAAATCAGCATAAAAAATGCTGATTCTATCTTTTTTATTAATCCTATTACTTAGATGATAGATATTATCCATAGGTTCTTGCCAACGCATCATACCTATAACATCATAGTTAGTATTTTCTAGTAAAAAATCTGCCATTTGTGAGCCAACTTGACCCGTAAAACCTGTAATTAATGCTGTTTTTTTCATAGATTATCCAATACTTTTTTAAACAAACTAATTTGTTCGCTAATGCTAAATTGGTGATTACCTACAAAAAATCCTTTCTCGTGAATATATTTTGCATTTTTCAGATCTTGATGAATTTCATAATCAAAATATTTAATCACTTCATTTTGTGTAAAATCTCCAGTAGCTATAGGACGATATTCTATATCATTTTCTTCTAGTTTTTTAATAATATCTTTTCTTTGCAATTTCGAATTTGGTCTAATCACCAAAGAAAATCCAAACCATGAACTACTTCCAATTTCTTTTTGCATAATAAATTCAGGATGATTTTGAAAGTATTCACAGAATAATTTCGCATTTTCTCTACGATGTTTTAAAAACATGGGTAATTTTTTAAGCTGTTCTACACCAATAGCTCCACTCATTTCCACCGGACGCACATTATACCCTGGCAACACAAAACGAAATGATTCACTAAACCAATCATCACTTTTATTGGCTACTAAATTTTCTTTTGGAAGGTTTCTAGTCCAACCATGCGCTCTTAAACATAGCAAAATATGATACAGCTCCTCATCATCTGTGATAACAAAACCACCTTCCATTGTGGCCATATGGTGAGAAAAGAATGTTGAAAAAGTTCCCATAATACCAAAAGTTCCAGTTTGCTTTCCCTTATACTCTGCACCCATTGATTCACAATTATCTTCAAGCAAGATAATATCTTTTCCCTTAATAAGATCATTGATTGCATCAAAATCATTAGGATTTCCTAATAAATTTACAATCATAATCATTTTTGTTCTATCACTAATGGCGCTACTTAAAGCATCTAAGTTGTAATTTAGTGTTTCTAAATCTATATCTACAAATTTTAATTTCAAGCCATACTGGTAAAACGGATAATAAGTAGTACTCCATGATACCGCGGGAACTATAACTTCATCCCCTCTTGTTAATTTAGGGTTTTTTGTATAAAACAAGGCTGCTGTTGCTATCAAATTTGCAGCTGAACCTGAACTTGTCATAACTGCATACCTCGAGCCTGTAAATTTAGCAAAATCTTTTTCAAATTCAGCTACCTTTTTACCCATGGTAAACATATCGCTTTTAATAACATCTTGTATTGCTTGTAATTCCTTTTCATCCCAAGTTGATGAGGCTAGTGTATATTTCATTTATTCTCCTTTATTTAAATACCAATCATACATCATTTTAATACCATCTTTAAGTTCAATTTTGTGTCTCCAACCTAAAGAATGAATTTTAGAACAATCCATTAAACGATCCATTGTGCTATCTGGTCTATTAGGATTAAAAATCAATTTTCCTTTAAATCCGACAATTTGTTTAACCATTTGAGCAACTTCTGCTATACTATAATCAATACCTGTTCCAATATTAATATGTGTATTTTTTATTTTTTCATCTTTTTTATATAAATCAGAAAAATTTACATTTTCCATAACATAAATAGCAGCATCAGCCAAATCATCACTATGTATAAATTCTCTTCTAACTTTCCCTGTCCCCCAAATTTCCACACAATCTTTTAAAATACCAAAATCAGTTAAATCTTTCTTCGCTTCAACAAATGATTTCATTTTTAAATCTTTTAAAATTTCATCCTCTCTTTCTTCTTCTAGTAGTTTAGCTAGATGAAATTTTCTAAGTAGTGCTGGTAGCACTCTAGACTTTCCAAAGTCAAAATTTGCTCTTGTTCCATATAGATTATTTAAAGCTAAAGTTATAAAATTGGTTCCGTATTGAATATTATATGATTCACACATCAATGTACCTGATATTTTTGCAACACCAAACGAGGTTGCATTATATTCTAATATATCAGTCAACATACTTTCTTCTTTGATAGGGTTGAGAGTTTTTTCAGGATACATATAACCTGAACCAAAAAAAATTAATTTTTTTACTCCAAATTTAAAAGATTGATGGATAATATTATTTTGTATAGTTGTATTTTCATATATAAAATCTGCTCTTTGAGATACATTAGCAGCACCACATGGCAAAACTGCTGCCAAAAAAACATATTCTGGCTGCTCGTTTTTAAAAAATTCAATCACAGCTTGTTGATTCAGTAAATCAAGTTCTTGTCGTGTTTTAAGAATTAAATTTTCATATCCTCTTTTTTTTAAGTTTTCTACTAAGGCAGTACCAGCTGTACCTTTGTGTCCTGCTATATAAATTCTAGAATCTTTATTCATTAAAATCCTTTAGTATGATCATTAATTGTTGCATCAATATCCCTATCTGATAATATAGGATTATTCGTTGGCCAATCTATAGCAATTCTACTATCATTCCATGCGTAGGTAAATTGTTCTTTGGCATCAACATATTCACCCTCATAAGCCCACTTATAATAATATAAAGCATCACTTTTTGAGCTAACATACTGCGCATTTCCAAAATAAGGTGGGATTAGAATTAATTTCTGATTATTTTGATTGATAATAAATTTTTCCCATTTTAGATAAGTAGGAGAGTCTTTTCTACAGTCAACCACCACTTGATGCACTTCTCCATACACACAAGTTACCAACTTCCACGACTTGTGATCTCCATGAATTCCTCTTAAAACATTTGGTTTTGATAAGGTAAATTTATCCAAAACAAAATTTAGGTTATCAGGAATCAAATGCTTTAAACAATCTTCAGAAAATGCTGACCAAATTTCCCCTCTCAAATCTCTAAATTTATTAGGAGTTATTATATATACTCCTTTTAAAATTTTTGATTCTTGTATATCAAATTCTATAGCCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP010906|1340385:1346455|1343684_1344848_-|WP_044306241.1|DBSCAN-SWA
MKYTLASSTWDEKELQAIQDVIKSDMFTMGKKVAEFEKDFAKFTGSRYAVMTSSGSAANLIATAALFYTKNPKLTRGDEVIVPAVSWSTTYYPFYQYGLKLKFVDIDLETLNYNLDALSSAISDRTKMIMIVNLLGNPNDFDAINDLIKGKDIILLEDNCESMGAEYKGKQTGTFGIMGTFSTFFSHHMATMEGGFVITDDEELYHILLCLRAHGWTRNLPKENLVANKSDDWFSESFRFVLPGYNVRPVEMSGAIGVEQLKKLPMFLKHRRENAKLFCEYFQNHPEFIMQKEIGSSSWFGFSLVIRPNSKLQRKDIIKKLEENDIEYRPIATGDFTQNEVIKYFDYEIHQDLKNAKYIHEKGFFVGNHQFSISEQISLFKKVLDNL
>NZ_CP010906|1340385:1346455|1344848_1345895_-|WP_002868500.1|DBSCAN-SWA
MNKDSRIYIAGHKGTAGTALVENLKKRGYENLILKTRQELDLLNQQAVIEFFKNEQPEYVFLAAVLPCGAANVSQRADFIYENTTIQNNIIHQSFKFGVKKLIFFGSGYMYPEKTLNPIKEESMLTDILEYNATSFGVAKISGTLMCESYNIQYGTNFITLALNNLYGTRANFDFGKSRVLPALLRKFHLAKLLEEEREDEILKDLKMKSFVEAKKDLTDFGILKDCVEIWGTGKVRREFIHSDDLADAAIYVMENVNFSDLYKKDEKIKNTHINIGTGIDYSIAEVAQMVKQIVGFKGKLIFNPNRPDSTMDRLMDCSKIHSLGWRHKIELKDGIKMMYDWYLNKGE
>NZ_CP010906|1340385:1346455|1341640_1342660_-|WP_044306239.1|DBSCAN-SWA
MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCTLIEREDRRIIFDSPDTNSYSEYESKEFLENDGKLDIFKSIYNRIVKDFTKKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQDQYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKKGKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAQILGKSWQSKKIISEIVSNDELERIYYLAMQNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKDQGYVQDFSFTKEGVKSWRI
>NZ_CP010906|1340385:1346455|1345894_1346455_-|WP_002868501.1|DBSCAN-SWA
MAIEFDIQESKILKGVYIITPNKFRDLRGEIWSAFSEDCLKHLIPDNLNFVLDKFTLSKPNVLRGIHGDHKSWKLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIINQNNQKLILIPPYFGNAQYVSSKSDALYYYKWAYEGEYVDAKEQFTYAWNDSRIAIDWPTNNPILSDRDIDATINDHTKGF
>NZ_CP010906|1340385:1346455|1342656_1343688_-|WP_044306240.1|DBSCAN-SWA
MKKTALITGFTGQVGSQMADFLLENTNYDVIGMMRWQEPMDNIYHLSNRINKKDRISIFYADLNDYSSIQKLFESKRPDVIFHLAAQSYPKTSFDIPIETLQTNIIGTANILENIRLLKAKDGYDPVVHVCSSSEVYGRAKAGVKLNEDTTFHGASPYSISKIGTDYLGRFYGEAYGIKTYVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPIIKVGNLSSVRTFQDCRDAIRAYYLLSLESEKGKIPCGEAFNIAGEEVFKLPEVIDILLGFSTRKDITVEQDEQRLRPIDADYQMFDNTKIKNYISWKPEIPARQMFEDLLNHWRDEIKKGRIPLNR
>NZ_CP010906|1340385:1346455|1341047_1341653_-|WP_002860371.1|DBSCAN-SWA
MENLNSYIKEHFQESILVKEQILKDENLITLIKNASLEVIKAYKNGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYENLFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGANGGAMNELCDYCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ
>NZ_CP010906|1340385:1346455|1340385_1341060_-|WP_044306238.1|DBSCAN-SWA
MQAIILCGGLGTRLKSVIKDIPKPMAPINDKPFLEFIFEYLKKQGIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKIIKNEAYVLNGDTFFGIDLSKLKLNRSKICLALKQMNDFDRYGTVNVDEQCLVISFEEKVFKKQGLINGGIYLLKKDIFDKFDLEKKFSFEEFLQENYIKLKARAEIFDDYFIDIGVPEDYYNFITNQSHF

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044306238.1|1340385_1341060_-	NTP transferase domain-containing protein	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	1.3e-06	25.9
WP_002860371.1|1341047_1341653_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.7e-16	35.0
WP_044306239.1|1341640_1342660_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	3.5e-59	40.5
WP_044306240.1|1342656_1343688_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.7e-147	73.9
WP_044306241.1|1343684_1344848_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A218MN59	uncultured_virus	3.3e-45	29.9
WP_002868500.1|1344848_1345895_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.9e-68	41.9
WP_002868501.1|1345894_1346455_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	5.0e-15	31.6