CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010898	Pandoraea vervacti strain NS15 plasmid pPV15, complete sequence	0 crisprs	RT	0	0	1	0
NZ_CP010897	Pandoraea vervacti strain NS15 chromosome, complete genome	2 crisprs	csa3,WYL,DEDDh,DinG,cas3	1	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010897_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010897_1

3303212-3303306

Orphan

Consensus_repeat	Method
CAACCCGCTGGCCCCGGTCACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010897_1

>merge|NZ_CP010897|1|3303212-3303306|CRISPRCasFinder
CAATCCGCTCGCACCGCTCACCTCTGCCCTCGGCGGCCTGACGGGCGGCATCGGCGGCGGCACGGGCGCTACCGGCCCGCTCGCCCCGGTCACGA

>NZ_CP010897|1|1|3303212-3303306|CRISPRCasFinder
CAATCCGCTCGCACCGCTCACCT	CTGCCCTCGGCGGCCTGACGGGCGGCATCGGCGGCGGCACGGGCGCTAC
CGGCCCGCTCGCCCCGGTCACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010897.2\|WP_044458203.1\|3311672_3312095_-\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP010897.2\|WP_052811066.1\|3312167_3312818_-\|DUF2939-domain-containing-protein	unknown	unknown	gnl\|CDD\|378575
NZ_CP010897.2\|WP_044456091.1\|3292493_3293417_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP010897.2\|WP_044456095.1\|3297758_3298787_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
NZ_CP010897.2\|WP_157123195.1\|3294788_3296105_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349765
NZ_CP010897.2\|WP_044456101.1\|3301817_3302138_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010897.2\|WP_044453212.1\|3305672_3306878_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP010897.2\|WP_044456103.1\|3309364_3310822_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|238287
NZ_CP010897.2\|WP_052811065.1\|3307721_3309023_+\|collagen-like-triple-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|374271
NZ_CP010897.2\|WP_044458205.1\|3313420_3314518_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP010897.2\|WP_044456100.1\|3300644_3300830_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NZ_CP010897.2\|WP_044456092.1\|3293413_3294787_-\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP010897.2\|WP_157123358.1\|3299667_3300108_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|227295
NZ_CP010897.2\|WP_044456096.1\|3299000_3299429_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP010897.2\|WP_084070659.1\|3310966_3311449_-\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP010897.2\|WP_052811063.1\|3304141_3305395_+\|collagen-like-triple-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|374271
NZ_CP010897.2\|WP_044456094.1\|3296229_3297534_-\|type-II-and-III-secretion-system-protein-family-protein	unknown	unknown	gnl\|CDD\|227299
NZ_CP010897.2\|WP_044456098.1\|3300214_3300415_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|368212
NZ_CP010897.2\|WP_052811064.1\|3306926_3307658_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP010897.2\|WP_044456105.1\|3314616_3316047_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779

Protein	Function_ID	Function_description	E-value
NZ_CP010897.2\|WP_044458203.1\|3311672_3312095_-\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	4.74122e-29
NZ_CP010897.2\|WP_052811066.1\|3312167_3312818_-\|DUF2939-domain-containing-protein	gnl\|CDD\|378575	pfam11159, DUF2939, Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.	2.19328e-24
NZ_CP010897.2\|WP_044456091.1\|3292493_3293417_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	1.98868e-53
NZ_CP010897.2\|WP_044456095.1\|3297758_3298787_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	1.31711e-30
NZ_CP010897.2\|WP_157123195.1\|3294788_3296105_-\|hypothetical-protein	gnl\|CDD\|349765	cd03111, CpaE-like, pilus assembly ATPase CpaE. This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.	5.87229e-59
NZ_CP010897.2\|WP_044453212.1\|3305672_3306878_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	7.81298e-52
NZ_CP010897.2\|WP_044456103.1\|3309364_3310822_+\|DUF2974-domain-containing-protein	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	0.00146443
NZ_CP010897.2\|WP_052811065.1\|3307721_3309023_+\|collagen-like-triple-helix-repeat-containing-protein	gnl\|CDD\|374271	pfam15984, Collagen_mid, Bacterial collagen, middle region. Collagen_mid is the conserved central region of bacterial collagen triple helix repeat proteins.	1.46712e-26
NZ_CP010897.2\|WP_044458205.1\|3313420_3314518_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	9.08369e-176
NZ_CP010897.2\|WP_044456100.1\|3300644_3300830_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	2.43163e-06
NZ_CP010897.2\|WP_044456094.1\|3296229_3297534_-\|type-II-and-III-secretion-system-protein-family-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	2.15567e-91
NZ_CP010897.2\|WP_157123358.1\|3299667_3300108_-\|prepilin-peptidase	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	6.85434e-07
NZ_CP010897.2\|WP_044456096.1\|3299000_3299429_-\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	3.12879e-05
NZ_CP010897.2\|WP_084070659.1\|3310966_3311449_-\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.17902e-36
NZ_CP010897.2\|WP_052811063.1\|3304141_3305395_+\|collagen-like-triple-helix-repeat-containing-protein	gnl\|CDD\|374271	pfam15984, Collagen_mid, Bacterial collagen, middle region. Collagen_mid is the conserved central region of bacterial collagen triple helix repeat proteins.	2.13319e-23
NZ_CP010897.2\|WP_044456092.1\|3293413_3294787_-\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	4.99535e-155
NZ_CP010897.2\|WP_044456098.1\|3300214_3300415_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|368212	pfam04964, Flp_Fap, Flp/Fap pilin component.	9.74813e-06
NZ_CP010897.2\|WP_052811064.1\|3306926_3307658_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.45262e-17
NZ_CP010897.2\|WP_044456105.1\|3314616_3316047_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0

>NZ_CP010897.2|WP_044456101.1|3301817_3302138_+|hypothetical-protein
MIVGNTKQTMYGAAAITAERQRIAARQQGAAADADRRGASPGRGGEEGGGVRATATPTDAANARSNRNTNSAHAMTGPDSAVVNALLFALIAQRMNTRLAAQAVLA
>NZ_CP010897.2|WP_044456100.1|3300644_3300830_-|Flp-family-type-IVb-pilin
MKLANRFRLFARDERGVTALEYGVLAAIVAVIIGGTVSGGLGTAFSSVFAKIQSVITTAGA
>NZ_CP010897.2|WP_044456098.1|3300214_3300415_-|Flp-family-type-IVb-pilin
MQANRARNGGRPRSGSRQEGVTALEYGILAAIVAVIIGGTVYTNLSGALTSAFASMTSAVSSAISH
>NZ_CP010897.2|WP_157123358.1|3299667_3300108_-|prepilin-peptidase
MTDLIARRIPNVWLIGVVAPTLVWVGWRAWQTGPQVLWVHGLGAVIGLLVLLPFWWRGVMAAGDVKLFAVIGLIAGYPVLLPVWCLASVAAGVHALILLTGRLKGLARWRGRLAQSRAWQRILQWRAGRVGLPYGAYLAAAALVVR
>NZ_CP010897.2|WP_044456096.1|3299000_3299429_-|pilus-assembly-protein
MRGVAALEFMLILLILLPAFYVAVAFSINILARQMLTQAASEAGRAMLRAGTMTQRQGYATTAINTTLAWPSASAVTATFPVDATYPCPASGVGAASQCIVHVTLTLNQPMTVNWPGLGALVPSTVVGTAAVTLDTSTLGGG
>NZ_CP010897.2|WP_044456095.1|3297758_3298787_-|Flp-pilus-assembly-protein-CpaB
MNKATKILAAVLVVAGVLLALFALRLGTANAPAPTATPSAVTQTLTQRFPAVVAAKTLTPGKPITADDIKVAQFDSPAPGAFSVPADVVGRVPLVALAAGVPVTQNLLARGLAMQLAPGERAVSLPVSETVGVSNRIRPGDYVDVFFTMKTNPPAAGPVVGLADDTQARLLASRVRVLTYGNASLDDVTPAPAAPSVASTVAAAASTQPPAQQPPVNAQSPMPATSTVVAVPIEDVNRLVLGAQQGKITLALRNPTDDAKPDTSLFPPTPPVLVSKAGLAGDTRAALDAPENRAYAGIATTGLAGEAPRRTAVATPRAPGGGAGASGTIEVVRGAERSSAAY
>NZ_CP010897.2|WP_044456094.1|3296229_3297534_-|type-II-and-III-secretion-system-protein-family-protein
MLACAATVAVRMADAADSAVSAGARSLTLGVDEQRELPVSGKLERVAVADPKVADVVVLKGSGGRRGSVLIVGKKAGTTQVSTWSAGSEARHWEIHVQGSLQGALGDSGTASVDARGNAAVIKGHAGSVMEHSGLQAAAVDATGKGGVVVDRSTVGETGVVQVDVKIVEVNRNILNQLGASFSASRTSGSGSFGIGSKLNSAFSGSGAVPNFGSFFGTITRGAFNLSAEIDLLQSNGLGRVLAAPTLVALSGQSASFLAGGELPVPQSGGLGTTTIVYKSFGVGLTVTPTILSPNRIALKVAPEASDLDYTNAVVIASTQIPAISTRRADTTVELGDGESFIIGGLISRTTTAAVDKVPLLGDLPLIGAFFRNLKYNSTEKELVIIVTPRLVKPVSRDVALPLPGDTREKRPGQVWGAYLMGVASDSELPGFSK
>NZ_CP010897.2|WP_157123195.1|3294788_3296105_-|hypothetical-protein
MTELHRFLFCSAHAGHGQWLSAALREEGVVLQEAGRPAQLQQRIGDLDPQVVLLDFSGEPTGHAEAPADGGIAQATELAQILKRVAPKLPLVAVGSMVRADGMKAAIRAGVHDFIDMHSTHEEALEVVRRVIDHTPSATSTAAPQRHGRFVVLLGARIGVGCSTLAAHLSQLGQELAVGANPERAAKSAKAGNGNKDDKFDTSLLGHVALLDLGLPSGDGLLYLNTQSQFSFAEAVQNLRRFDETLVHTALSHAPSGLAVLPLPLDLGDMRSVAAADALALTDRLRAFFDLIVADLGGFSNPAFVASLVRAADEVWLVVDQSVGAIVSLASMLRDLEEKSVERSHLHLVLNRYDPRYGMAADQIAKRFDVPLLATLPDRPLAMLSATNQGKLILDTARGDPYVRALQPLVERLLSAQHAGAASHRQSSSWLGRFMGKH
>NZ_CP010897.2|WP_044456092.1|3293413_3294787_-|CpaF-family-protein
MTDSIEFADDKRAFANSQQFQDIKTAAHEHLLARIEELGAEFGRWSRSAIQQFVDLEMDGFVRLRRIPINEAELRQISDALTKELAGFGPIEDLLADAAVEDILINGYNDVYVSRRGVLAREALRFSDNQHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRLNVVIEPLAVDGPVVSIRKFRKDPLKPSDLLALGSFNEEIYNLLEAAVRSRCNILVSGGTSSGKTSLLNALASFIPATERVVTVEDTAELSLNHPHVVRLESRQGGFDGSGEVTIRDLIRNSLRMRPDRIIVGEVRGSEVLEMMQAMNTGHEGSMATIHANSPRECLYRLEMLAGFAGFQGSESSLRRQITSALDFIVQIGRLSNGRRRILSITEVTGVSDTVISTQELFRHESIIGPDGEEKDKWVSLGLQPHSPKLQRYKEQTRNAAAALQSQQGNVPPENGGGGGFFGRRR
>NZ_CP010897.2|WP_044456091.1|3292493_3293417_-|type-II-secretion-system-F-family-protein
MNPIVLWVACIALLLVAAGLELWRRSHQRAREQATSAFLERQLAQSAPRFAGSETGEVRASRRKSLPWEFFFERAGVHTDSTFYLTLIAPGVLLMLGFWAWNGPLSAIVILLLYVVGVVLRYWLKAARRHRDIVRQLPVFLDGMVRMLTVGNSLPAAFQSAAGNTDQPLRELLERAVRQVQAGVDLDVALKHIARVYQVEEIYLFASVVDLSTRFGGRADQILARMSGFMRDREQAQAELFALSSETRMSAWVLAALPIVVSAMLMLLNPAFFEPMFKEAAGQKLLAIGMGLEIFGGFVLYRLAKSL
>NZ_CP010897.2|WP_052811063.1|3304141_3305395_+|collagen-like-triple-helix-repeat-containing-protein
MSNALQRTLLASAAMAAIALTGCSSGGGGSGATSTGTTGTPNAVGTTASGAGGIVSSAGNVVSALGDQVANTQLPLVSAQTSQGMGGALKSTGDAVTDLGNGVSAGLGQSGTSADTVGTTLKVGLAPAITDLGHAGVQLGSGISGITKGNPLQNTPADTLVGAVGNIVGTVGQAGIAGGAIASQAFSGGPVAQVTQTLSSAVNPITDVVSDTTRTVGNTTGLGGPLNGLLGTVGSTVAGLGVQIGGTSSNGVVKSLGNTVTATGNTVSTLGGFVNGSTSTGSANPFGSLLGGLGNTAAGGGGSSGGSLGSLGSLSGLLGGGSGPLAPVTGLLGGLGGAGGGSSPLAPVTGLLGGLGGATSGSSGSSGSSGSSPLAPVTSLLSGVTSSAGGSSGATNGLAIILVPVTNLLGSVASVGK
>NZ_CP010897.2|WP_044453212.1|3305672_3306878_+|IS110-family-transposase
MHNFPLHDAVDVFIGVDVGKGHHHAVALDRNGRRLYNKALPNDETQLRALIDELKAHGQLLFVVDQPATIGALPLAVARDAGTLVAYLPGLAMRRIADLHAGEAKTDARDAAVIADAARTMPHTLRSLRLADEPLAELTMLCGFDDDLAAQANQTSNRIRGLLTQIHPALERVLGPRLDHPAVLDLLERYPSPAALAAAGQKTLANRLIKLAPRIGKSLAADIAQALTEQTVVVPGTHAATLVMPRLAQQLAALRKQRDEIAAEVERLVQSNPLWPVLSSMPGVGLRTAARLLTEVAHKAFASAAHLAAYAGLAPVTRRSGASIRGEHPSRRGNKVLKRALFLSAFAALRDPISRAYYSRKIQQGKRHNQALIALARRRCDVLFAMLRDGTFYQPKTDPSA
>NZ_CP010897.2|WP_052811064.1|3306926_3307658_+|MarR-family-transcriptional-regulator
MARFISDTGVLMRGHGESAPQTSEPLAMRESGDGYVPRHSHNTYGADTGVASGATSTSAPSHGTNGTMSDRHTNRNDLVAGIVRSLGRRLAVYTALYHAALAEQLGLNVTDLNALDLILELESITAGQLAELMGVSSGGITTVIDRLERAGFVEREKNPHDRRMVMIHPIEERCAQIEQFLSSVSRELTAVSAAYDHSELAAIHDFLVQSIRTLKSETFRLRFEADQDIAGLVSNTRGTSSKT
>NZ_CP010897.2|WP_052811065.1|3307721_3309023_+|collagen-like-triple-helix-repeat-containing-protein
MSKILHPTLLVALVAGVIGVTGCSSSGGGSGATGDTPNNPSTPNTPNTPTNPNNPTNPSSSSNGVVSSVGSVVSAVGNQVSNTTIPGVSPQVTQGVGGAVSLTGKAVTDLGTGVGDGLGQLGKRGANPVGTTLASTGGVVSDLGNATKSLGSGVAGIGNSGPLANTPVAALTGVLGNVVTTVGQGGVTGGQALTQGLTSPQVVQASAALSSAITPITNTVVTTTQTLGNTTGLGTPVAGLLGTLGGALNTTGAQVKASAPNGVVASLGNPLMALGNTVASAGGLLSGTTGTASPNALGNVLANVGNTTVSPTAAGSNHPLGALTGLLSGLGGATGASGNPLGSVTGLLGGLTTGTGSSGSNPLGAVSGLLGGVTSTAGGSGSGATASPLAPVTTLLSTVTTPLTSLASTGTGSSGSAGGLLAPVTGLLGGLGK
>NZ_CP010897.2|WP_044456103.1|3309364_3310822_+|DUF2974-domain-containing-protein
MHILTGAFSPTLSPSTLTTPAANEPVHDPVDGAPVDTTPSATHAPAMPDQWPEHVNERRMAGEQWRSALQRIAPPPHTGITRGTNRPHALNDLLQALTRAWREAARSAPSSASFGGDPTDTDTVSRANGLRQANAYREVLFQMTPLVGPDAAHEVAETTSKLVPIAQRVDEIDTWIESRGRRHTPAALLEQRDAIAAALVNYDVYFDHVVPQILPSRVQRLENHDDNGSGQSGHFAAVYADALSNKIIVANRGTEIGIAGRASVDWMHNIRQALGLTSTQYDKAVGLARSLAWTYGAKTLVFTGHSLGGGLATAQTSVVPGSRGLTFDSAGLHNRTVARHSASPASSRITAYYVDGEALSLLQETVKHAERLAMHFPLVGKAMGWVSRLMIPRPVGQRIGVPAALPPVAPEMRTDVSRSSATSQARDVGNASDIDDPKRDIRPARGVLGAIEKHTMPQMIHALFDRLPKRTGSREDIGALQGVAS
>NZ_CP010897.2|WP_084070659.1|3310966_3311449_-|DUF2147-domain-containing-protein
MMQISNATSWRRLGAQALVAVALLGGMANAAMAADENSPVGVWKTIDDATGKPKALVTISEKDGEYVGVITKGLGPNDDPERVCEKCTDARKGQKMLGMQIIRGIKKDGDEYSGGYILDPENGKDYKCELTVVDGGKKLDVRGFIGISLIGRTQTWIREQ
>NZ_CP010897.2|WP_044458203.1|3311672_3312095_-|DUF2147-domain-containing-protein
MLTGNALVAAAAADVSSPVGVWRIVDETGDPKALITISEHDGEIVGALTKSLGRPDGLERRCTECTDWRKDKKLQGLQIIRGLHKDPDSDEYVGGKILDPDSGSEYGCKMRVVAGGKKLEVRGYFGISLLGRTQTWIREP
>NZ_CP010897.2|WP_052811066.1|3312167_3312818_-|DUF2939-domain-containing-protein
MRKLSVVVVALVVVLGLLFGTPYYTLWRARDAANARDADALSSYVDYPAVRESLKTSLHDELSRQMDKQRGNAFGALALALGGWVSDRVVEALLTPQAVAAMLRGDSTGLPPAPGAPAPRDIAPPQPSAPQSAAPATPATPATPPTNGDANSSAAAGTGAPENNPPRTTTKTEFQDFNHFLVHVSRSDRPERVVTFTLTRRNVVQWRLTAIALPPL
>NZ_CP010897.2|WP_044458205.1|3313420_3314518_-|cell-division-protein-ZapE
MNVREYYQQELAARGYKPDEAQERAVERLQKCYDEWAAYKSKRSNTLKKWLVHPDLPKGVYLWGGVGRGKSFLMDSFYSVVPLQRKTRLHFHEFMREVHHQLQALKGLPDPLDELAKRIAKRYRLICFDEFHVSDVADAMILHRLLAELFKNGVQFVMTSNYRPDTLYPDGLHRDRVLPAIRLLEEKLDVLNVDAGVDYRRRTLAQVQVYHYPLGNDANRALRAAFSEIAGVPDESPLLHIEQRELKALRRAGGVVWFDFHTLCGGPRSQNDYLELANRFHTVVLSDVPKMTPRMASEARRFTWLVDVFYDHKVKLLMSAQVPAEELYTEGTLAHEFTRTVSRLVEMQSLEYLEAPRRVVDTSLT
>NZ_CP010897.2|WP_044456105.1|3314616_3316047_-|dihydrolipoyl-dehydrogenase
MANKAFDVVVIGAGPGGYIAAIRAAQLGFSVACVEKWTNPAGKMVLGGTCLNVGCIPSKALLASSEEFEKIGHHLADHGITTSDVKIDIAKMLSRKQGIVDKMTGGIEFLFKKNKITWLKGHGTLVAKSDGGYQIDVKGDETESVTAKNVIIATGSKARHLPGMPVDNKLISDNEGALSFDTVPKKLGVIGAGVIGLELGSVWRRLGAEVTVLEAMPEFLAAADAGVAKEAAKQFKKQGLDINVGVKVGEVKTGKDNVTVNYTDKDGKEHTLEVDRLIVSVGRVPNTDDLGLGNIGLATDERGFIPVDDHCRTKLPNVYAIGDVVRGPMLAHKAEDEGVLVAEVIAGQKPHIDYNCIPWVIYTSPEIAWVGKTEQQLKAEGREFKPGQFSFAANGRALGMGSSDGFVKVLADAKTDEILGVHVIGLNASDLIAEAVVAMEFKAASEDIGRICHPHPSLSEVMREAALDVEKRALNK

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Crispr_ID: NZ_CP010897_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010897_2

5164873-5165204

Orphan

Consensus_repeat	Method
GTGGGTGCTGTGGGTGCTGTGGGTGC	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP010897_2

>merge|NZ_CP010897|2|5164873-5165204|CRISPRCasFinder
GCGGGTGGCGGGGATGCAGTAGGTGTCTCAGGGGTCGTGGGTGCTGTGGGTGCTGTGGGTGCTGTGGGTGCTGTGGGTGCTGTGGGTGCTGTGGGTGCTGTGGGTGCTGTGGGTGCTGTGGGTGCCGTCGATTCCGTGGATGCCTCGGGTGCCGTGGGTGGCGCGCATGTCGCGGGTGAGACGGGGCCGGCGGGAACGGTGGGTGTCACGGTTTCAGCTGCTGTGGTGGAGGCTGTGGACTCAGTCGGTGCGACAGGTGTGGTGGAAGTCGCGGGTTCAGTTGACGCGACAGGTGTGGTCGAAGCAGTGGGCACAATTGATGCGGCGGGTGC

>NZ_CP010897|2|2|5164873-5165204|CRISPRCasFinder
GCGGGTGGCGGGGATGCAGTAGGTGT	CTCAGGGGTCGTGGGTGCT
GTGGGTGCTGTGGGTGCTGTGGGTGC	TGTGGGTGCTGTGGGTGCT
GTGGGTGCTGTGGGTGCTGTGGGTGC	TGTGGGTGCCGTCGATTCC
GTGGATGCCTCGGGTGCCGTGGGTGG	CGCGCATGTCGCGGGTGAGACGGGGCCGGCGGGAACGGTGGGTGTCACGGTTTCAGCTGCTGTG
GTGGAGGCTGTGGACTCAGTCGGTGC	GACAGGTGTGGTGGAAGTCGCGGGTTCAGTTGACGCGACAGGTGTGGTCGAAGCA
GTGGGCACAATTGATGCGGCGGGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010897.2\|WP_044457268.1\|5167663_5168275_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236537
NZ_CP010897.2\|WP_044457265.1\|5161130_5161322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010897.2\|WP_044457262.1\|5158855_5159206_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP010897.2\|WP_044457261.1\|5158398_5158875_+\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|366690
NZ_CP010897.2\|WP_044457269.1\|5168358_5169078_-\|cytochrome-c1	unknown	unknown	gnl\|CDD\|225413
NZ_CP010897.2\|WP_044457259.1\|5155861_5156740_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|132386
NZ_CP010897.2\|WP_084070904.1\|5161534_5162707_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|366149
NZ_CP010897.2\|WP_044457272.1\|5171538_5171985_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|237569
NZ_CP010897.2\|WP_044457270.1\|5169109_5170495_-\|cytochrome-bc-complex-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|224209
NZ_CP010897.2\|WP_044457274.1\|5172806_5174021_+\|Do-family-serine-endopeptidase	unknown	unknown	gnl\|CDD\|273938
NZ_CP010897.2\|WP_044457258.1\|5154438_5155719_+\|3-(3-hydroxy-phenyl)propionate-transporter-MhpT	unknown	unknown	gnl\|CDD\|236927
NZ_CP010897.2\|WP_044457260.1\|5157162_5157366_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010897.2\|WP_044457275.1\|5174136_5174952_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
NZ_CP010897.2\|WP_044457267.1\|5167128_5167587_-\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|236987
NZ_CP010897.2\|WP_044457271.1\|5170497_5171112_-\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|273610
NZ_CP010897.2\|WP_044457263.1\|5159273_5160860_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP010897.2\|WP_157123272.1\|5160936_5161089_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010897.2\|WP_052811195.1\|5165339_5166833_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP010897.2\|WP_157122994.1\|5157382_5158194_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP010897.2\|WP_044457273.1\|5172038_5172788_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|182741

Protein	Function_ID	Function_description	E-value
NZ_CP010897.2\|WP_044457268.1\|5167663_5168275_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	7.99509e-61
NZ_CP010897.2\|WP_044457258.1\|5154438_5155719_+\|3-(3-hydroxy-phenyl)propionate-transporter-MhpT	gnl\|CDD\|236927	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional.	0
NZ_CP010897.2\|WP_044457262.1\|5158855_5159206_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	4.7532e-48
NZ_CP010897.2\|WP_044457261.1\|5158398_5158875_+\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	4.93906e-09
NZ_CP010897.2\|WP_044457269.1\|5168358_5169078_-\|cytochrome-c1	gnl\|CDD\|225413	COG2857, CYT1, Cytochrome c1 [Energy production and conversion].	1.90741e-72
NZ_CP010897.2\|WP_044457259.1\|5155861_5156740_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|132386	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.	5.80764e-128
NZ_CP010897.2\|WP_084070904.1\|5161534_5162707_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|366149	pfam00529, HlyD, HlyD membrane-fusion protein of T1SS. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD and HlyB are inner-membrane proteins and specific components of the transport apparatus of alpha-haemolysin. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.	1.48717e-23
NZ_CP010897.2\|WP_044457272.1\|5171538_5171985_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|237569	PRK13952, mscL, large conductance mechanosensitive channel protein MscL.	1.02624e-84
NZ_CP010897.2\|WP_044457270.1\|5169109_5170495_-\|cytochrome-bc-complex-cytochrome-b-subunit	gnl\|CDD\|224209	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion].	4.83391e-125
NZ_CP010897.2\|WP_044457274.1\|5172806_5174021_+\|Do-family-serine-endopeptidase	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.45973e-153
NZ_CP010897.2\|WP_157122994.1\|5157382_5158194_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.01417e-26
NZ_CP010897.2\|WP_044457275.1\|5174136_5174952_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	2.79156e-95
NZ_CP010897.2\|WP_044457267.1\|5167128_5167587_-\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|236987	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional.	3.16502e-74
NZ_CP010897.2\|WP_044457271.1\|5170497_5171112_-\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	gnl\|CDD\|273610	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit. This model represents the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c reductase. The model excludes the Rieske iron-sulfur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. [Energy metabolism, Electron transport].	1.87819e-71
NZ_CP010897.2\|WP_044457263.1\|5159273_5160860_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.31268e-112
NZ_CP010897.2\|WP_052811195.1\|5165339_5166833_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.26457e-50
NZ_CP010897.2\|WP_044457273.1\|5172038_5172788_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|182741	PRK10799, PRK10799, type 2 GTP cyclohydrolase I.	4.41166e-101

>NZ_CP010897.2|WP_084070904.1|5161534_5162707_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MRLLSVVLTTFAVAVILFLTFGSYTQRATVRGQLAPAQGLIKLYAPESGIVVERRVRDEQVVKTGDVLYVISGERQSALGATQAAISAQVRQRDESLRDSRDKTRVMQTSERDSLEATVKGLRGQAGALDAQIAGQRERVSLAEQTAERYRGLVGQGYISQEQADQKRADALDQRGQLQSLMRERLRVGADLAAQQNALTELAVKQAKQLAAIDREISGNAEALSQSEAKRSAVIVAPQAGIVTAAVAEVGQVVDAQRPLAAIVPAGSRLQAELYAPSRSVGAVKPGDKVLLRYQAYPYERFGQQPGVVDAVARTALPADQLGDAARAQRESAGEPLYRIIVSFDATPTSPLGQPWVLRSGMQVEADLLQQRRRLYQWAFDPVQSLSGKL
>NZ_CP010897.2|WP_044457265.1|5161130_5161322_+|hypothetical-protein
MTTKAENTTQRTESVQPAELSAEEIAQVGGGVGPNRFNIGLSVPSTTSAGATTPLSGGRGVAG
>NZ_CP010897.2|WP_157123272.1|5160936_5161089_+|hypothetical-protein
MSVSVSGTATPRPTEVTELSDQEISEVSGGVGLRKTSVAAQGLSGYRIAR
>NZ_CP010897.2|WP_044457263.1|5159273_5160860_+|IS66-family-transposase
MSAQDPTADLPPEVLAYIRKLEASNRELKARVEQLEELFRLAQLKRFAPSSEKLKDRVFDEAEQAAVAEPVEDDPNGVFALPNTGLPASGAPSPGKRGRKPLPADLPRTRIEYDLPDDQKVCPCCQHALHRMGEQTCEQLHIEVKASVVQHVRLKYACRHCERHAELTPIVIAPMPAQPLPGSNASPAMIATVMTAKYADGTPLYRMTEALGRSNIEISRGTLAHWVIRPAERHLSRLYDALRGTLLSQSLIHGDETTVQVLKEAGKNAQSQSYMWVYRSAETCAEPVVLFEYQPGRGQQYPQAFLKGYAGTLMTDGYSAWRTLGSVTQLGCMAHARRAFDEAYKAHKQPDGRARQALEFFKSLYQVETLARGELPEGETRTGYTYRLRQAHSVPLLDAFGVWLDKQAPQVLPESLTGKAINYARNQWDYLRRYVEDGDAPIDNNVIERDIRPFTTGRKAWLFSDTVAGAKASAIVYSLMLTCRACDVEPYAYLLHVLTELPQRPANADISDLLPFNFAKSHGASASV
>NZ_CP010897.2|WP_044457262.1|5158855_5159206_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MFKLDAKLAVYLHRDAIDFRKSINGLAALVEAGGMDPFGPALYAFSNRHRNRIKLLGWGGNGFWLLMKRLEEDRFVWPRRAQAVVALTPEQLHWLLDGIDIEAVRRHPARQYRHAG
>NZ_CP010897.2|WP_044457261.1|5158398_5158875_+|IS66-family-insertion-sequence-hypothetical-protein
MTEFNSDLTLTVTCVGRNGKRRYDAESKQRLIEASLQRGVSVAGLALKAGVNANQLRRWIRLYQERGGRVGLSGQRIAPVPTIPSSFIPVLEIPHGSAPANVPASASPPLSPCTPMRAQLSVEMPNGVTLRLDCTEHDASLVSAMIESLGRCDVQARR
>NZ_CP010897.2|WP_157122994.1|5157382_5158194_-|IS5-family-transposase
MAKPILDDELWAIIQPLLPPPKPRRARYPGRKPLDDRAVLTGILFVLQSGIPWEMLPQEMGCGSGMSCWRRLHAWQKAGVWDRLHEVLLAKLRAADRIDWSRVVVDSSSIRAVGSGPKTGPNPTDRARPGSKHHVLTDAQGIPLSLILTGANRNDITQLLPLIEAIPPIRGKRGRPLSKPHIVQGDRGYDHDKYRKPLHAVGIATEIARRGEPHGSGLGKTRWVVERTIAWLHNFKRLRVRFERLAIIHEAFLKMAGCIICWRHLRKSFC
>NZ_CP010897.2|WP_044457260.1|5157162_5157366_+|hypothetical-protein
MKMKTKAVTQSDSVAQSSTEAGVTELKTHEVDQVSGGAGYVKPGGVFSLTNPSATLPRKSNQYYQAS
>NZ_CP010897.2|WP_044457259.1|5155861_5156740_+|alpha/beta-fold-hydrolase
MTATQSTGTPFTEASTSRFVTIRDADTEFRIHYNDVGSGAETVVMLHGSGPGATGWANFNRNVAPLVEAGYRVLLVDCPGWGKSSSVVNTGSRSELNGRVLKAVLDALDIERVHIIGNSMGGHSTVAFALANPTRVGKLILMGGGTGGPSQFVAMPTEGIKLLNGLYKDPTIENLKRMMNVFVFDASSITDDLMQARLDNMLANREHLENFVKSLAANPKQFTDYGTRLGEIAAPTLIVWGREDRFVPMDVGLRLLAGLPNAQLHVFNRCGHWVQWEHADAFNRMVLDFLKH
>NZ_CP010897.2|WP_044457258.1|5154438_5155719_+|3-(3-hydroxy-phenyl)propionate-transporter-MhpT
MNASTPQEANRARGSFATIGLCLAIALLEGLDLQSAGVAAPRIAKEFGLSVAQMGWAFSAGAIGLLPGAALGGRLADRWGRKRVLMMSVALFGIFSLATAHVWNFESLLAARFLTGLGLGAAMPNLIALCAEAAPHGHRNTAVGAMYCGMPFGAALAAVIGIVSPSEEGWRHVFYVGGFGPLLMVPLLGLCLRESAQFVASRVARSATTGPSAQLTAQATPSVMHALWKEGRTRTTIALWISYLGTLIVLYFLMNWLPSMVVANGLSRAQAGVAIMMFNIGGGIGAIGIANVMDRFSPRLTVIGMYIGIALSLAGLSSAIGALTMAAGAFFCGLFLVGGQSVLYSMAGQAYPTEVRGTGVGAAVAIGRLGSILGPLIAGQLFALGQSASMLVSSSIPLIVIAAMAALTVVGTFAPRLVGGMAQSGR
>NZ_CP010897.2|WP_052811195.1|5165339_5166833_+|TolC-family-protein
MASFVLRTRHLLPALLALGAALFSPTAAGWGWNDPLHTMVPPPPAALDTPSWQASVASAALASSTSSPVAANTLASTDAPLSLPDAVAMALTTDPRTRQAWAEIQGRQARLGVARSAYLPNVTATGSVARVGQRVTYDDSPEFDSSLNSRSTDIALNLTWVLYDFGQRSATVTRDTALVNAAVSSRNASLQTVFLDTVKAYYEAQARRSVLRSAREAERIARESFDAAAARLTAGIGARADQLQAETTWSRMRLATLQAESAARLAIGELALAIGARADAALTLTPLPPLGSETLDERRAVGPMLDQALAQHPDVLAAQAELEAAQANVDVMQSQGRPTISLTAWADRGDTPITQVTTRQVINNRSVGIQISIPLFEGFSRQYRVRDAQSEVDRRRETLNLVKRRIAADVWRHYEVFSSSADTLQLAGTLVTRARETTDVALGRYKAGVGTLLELLKAQNDLTDAEQQHIAAYTALHTARLQLAADVGRLSVEALRR
>NZ_CP010897.2|WP_044457267.1|5167128_5167587_-|ClpXP-protease-specificity-enhancing-factor
MPETSTKPYLLRALYEWCTDNGYTPYLAVHVDAKTRVPREFVKDGEIVLNISFDATSGLQMGNDWIEFSARFGGISQKVEVQVPNVLAIYARENGQGMAFPVDKQASADESPELEAVPSVQETGEDDPDPTRPGGNGAAGGNAGRARLKVVK
>NZ_CP010897.2|WP_044457268.1|5167663_5168275_-|glutathione-S-transferase-N-terminal-domain-containing-protein
MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDIAVMNPYGQVPILVERDLILYESNIINEYIDERFPHPQLMPADPVQRARARLFLFNFEKELFVHVSALENEKGKAAEKNHEKARLSIRDRLTQLAPIFVKNKYMLGEEFSMLDVAIAPLLWRLDHYGIELSKNAAPLMKYAERIFSRPAYIEALTPSEKVMRR
>NZ_CP010897.2|WP_044457269.1|5168358_5169078_-|cytochrome-c1
MRKLLLILALLSGFAAPALAEEGGALDTAPSRIDDLASLQRGAKLFVNYCLNCHSAASMRYSRLKDLGLSEAEIKNNLLFTTDKIGETMTVAMRTADAKEWFGSAPPDLSVEARARGTDWLYTYLRTFYRDDARPTGWNNLAFPNVGMPNPFWQLQGQRGLKHAQGGEHGPAQFVQITQGTMKPVEFDSAMADLVSYLDWMSEPAQRTRRQLGVWVLLFLGLFTVLAWRLNSAYWKDVK
>NZ_CP010897.2|WP_044457270.1|5169109_5170495_-|cytochrome-bc-complex-cytochrome-b-subunit
MAADKQVDTTGLLGWIDRRFPLTQLWKDHASEYYAPKNFNFWYFFGSLAMLVLVIQILTGIFLVMNYKPDANLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGLLYGSYRKPRELVWVFGCLIFLCLMAEAFMGYLLPWGQMSYWGAQVIVNLFSAIPFIGPDLSLWIRGDYVVSDATLNRFFAFHVIAIPLVLIGLIVAHIIALHEVGSNNPDGIEIKDKKDANGRPLDGIPFHPYYTVHDIMGVGVFLMVFSAIVFFAPTMGGYFLEANNFIPSDPLKTPPHIAPVWYFTPFYSMLRATTDDFKHLLMGVAVLVAAVWWIKGRAAVTTKVAASGGVVLLLLFMFLTEAKFWGVVVMGGAVVTLFFLPWLDHSPVKSIRYRPGFHKVLLGILVVVFAVLGYLGIQEPTPVKTAISQIGALYYFGFFWLMPLWSKRGTFKPVPDRVTFAAH
>NZ_CP010897.2|WP_044457271.1|5170497_5171112_-|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit
MSNNQKRAVDSNRRNLLIATSVAGGVGGVATLVPFVSSLEPSERAKAGGAPVEADISGLKPGEKMTVSWRGLPVWIVRRTPEELASLSKVTAELADPDSKETFSYPMPDYAKNEFRTRVEHKDLLVVVGVCTHLGCIPSGPYQAKTLPALGNDPGFLCPCHGSTYDMSGRVFKNKPAPKNLDVPRFMFVSDTKIVIGKDEKGEA
>NZ_CP010897.2|WP_044457272.1|5171538_5171985_+|large-conductance-mechanosensitive-channel-protein-MscL
MSFMSEFKEFAVKGNVIDLAVGVIIGGAFGKIVDSVVKDLIMPIVGAIFGGLDFSSKFILLGAIPPDFKGNPTSYADLTKAGVAVFGYGNFITVALNFLILAFIIFLMVKQINRLKRPAPEAPAAPAPTPEDIVLLREIRDSLKKQNG
>NZ_CP010897.2|WP_044457273.1|5172038_5172788_-|Nif3-like-dinuclear-metal-center-hexameric-protein
MNRVELELYLNDTLQIAQFRDYCPNGLQVEGRSEIRKIASGVTASLAFLEAARDWGADAVLVHHGYFWKNEDARITGMKRKRLGLLIGNDISLFAYHLPLDAHPELGNNAQLGKRLGFADDGGRFGPDQLGWLGAPSQPTTLGALATDVERQLGRKPLLLGDPNRQVRRVAWCTGGAQGFFEAAIAAGADVYISGEVSEPTQHLALESGVGYLAAGHHATERGGASAVGEHVAARFGLEHRFFDMPNPA
>NZ_CP010897.2|WP_044457274.1|5172806_5174021_+|Do-family-serine-endopeptidase
MLRRFWLLFAQAVTVLLALLFIIATLKPQWLQRQGSFGKQLANPIIALQEVAPSLSDKPAAGSYADGAQKAMPAVVSIFSSKEQKQNRDPRLDDPLFRYFFGDGGGTVRQDPVSSLGSGVIVSSEGYILTNHHVVDGADEIEVALADGRKARAKLVGSDPETDLAVLKITLDNLPAITLGRMDQVRVGDVVLAIGNPFGVGQTVTMGIISALGRNHLDISTFENFIQTDAAINPGNSGGALVDVNGNLLGINTAIYSRSGGNMGIGFAIPVSTARSVLESIITTGGVTRGWVGVEPQDITSDIAESFGLQQDSGVIIAGVVQGGPADKAGVQPGDILTKVNDESIRDTTELLNVIAQIKPGTQAKLHVTRKKKELDLTVTIGKRPPPPKRPAQDEDDGDENNAD
>NZ_CP010897.2|WP_044457275.1|5174136_5174952_-|twin-arginine-translocase-subunit-TatC
MSDEKQIPEGGAEETFISHLVELRNRIIRAGTAVIVVFLSLVYWAPDIFRLLARPLTQSLPADGKLIVTDITGSFFVPMKVTLMVAFVIALPIVLYQVWAFIAPGLYQHEKKLVMPLVVSSYTLFLIGMAFAYFLVFPTVFHFIAHYNAPLGAEMNTDIDNYLSFVLTMFMAFGVTFEVPVVVVVLARMGVVSLAKLKQIRPYVVVGAFVLAAVVTPPDILSQLLLAVPLCILYELGLIAARLFVKQGEQSDAQKDAKDGKGDSENGQATS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP010897_2	2.3\|5164989\|19\|NZ_CP010897\|CRISPRCasFinder	5164989-5165007	19	NZ_CP010897.2	2188077-2188095	2	0.895

1. spacer 2.3|5164989|19|NZ_CP010897|CRISPRCasFinder matches to position: 2188077-2188095, mismatch: 2, identity: 0.895

tgtgggtgccgtcgattcc	CRISPR spacer
tgtgggcgtcgtcgattcc	Protospacer
******.*.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8343 : 69846

Staphylococcus_phage(20.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044453166.1\|8343_9837_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_044453167.1\|9833_10655_+	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	1.0e-08	30.1
WP_174556755.1\|10651_10825_-	hypothetical protein	NA	NA	NA	NA
WP_044453168.1\|10941_11529_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_044453169.1\|11533_13045_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.3e-86	39.0
WP_044453170.1\|13037_14087_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	2.1e-67	41.4
WP_044453171.1\|14076_15294_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_044453172.1\|17549_19136_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.7e-151	54.4
WP_044453173.1\|19194_19542_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.5e-35	66.0
WP_167370622.1\|19538_19922_-\|transposase	transposase	NA	NA	NA	NA
WP_044453176.1\|20910_21942_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.0e-82	47.6
WP_044453177.1\|21941_22748_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.5e-78	58.3
WP_044453178.1\|22917_23259_+	hypothetical protein	NA	NA	NA	NA
WP_174556775.1\|23338_23989_+	DUF45 domain-containing protein	NA	NA	NA	NA
WP_167370682.1\|24120_25319_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	4.2e-104	66.2
WP_044453181.1\|25607_26636_-	aliphatic amidase	NA	NA	NA	NA
WP_044453182.1\|26714_27083_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_044453183.1\|27161_28400_-	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	5.5e-131	56.9
WP_044453184.1\|28472_29162_-	urea ABC transporter ATP-binding subunit UrtE	A0A2H4PQG7	Staphylococcus_phage	1.5e-13	25.0
WP_044453185.1\|29176_29920_-	urea ABC transporter ATP-binding protein UrtD	A0A2H4PQG7	Staphylococcus_phage	4.9e-18	28.3
WP_044453186.1\|29923_31111_-	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_044453187.1\|31218_32136_-	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_044453188.1\|32203_33475_-	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044453189.1\|33671_37136_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	3.6e-31	28.0
WP_044457547.1\|37146_38103_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.7e-13	32.0
WP_044453190.1\|38287_39631_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_044457548.1\|39649_41686_-	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
WP_044453191.1\|41987_42869_+	isocitrate lyase/PEP mutase family protein	NA	NA	NA	NA
WP_044453192.1\|43272_43809_+	hypothetical protein	NA	NA	NA	NA
WP_044453193.1\|44040_45927_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.6e-09	27.3
WP_044453194.1\|46386_46911_+	hypothetical protein	NA	NA	NA	NA
WP_157122938.1\|47509_48727_+	hypothetical protein	NA	NA	NA	NA
WP_157122940.1\|48982_50611_+	hypothetical protein	NA	NA	NA	NA
WP_044453198.1\|50755_52381_+	hypothetical protein	NA	NA	NA	NA
WP_044453199.1\|52695_53271_+	hypothetical protein	NA	NA	NA	NA
WP_044457549.1\|53318_53948_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_044453200.1\|53971_54241_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_044453201.1\|54350_55211_+	nickel/cobalt efflux transporter RcnA	NA	NA	NA	NA
WP_084070257.1\|55340_56099_+	isochorismatase family protein	NA	NA	NA	NA
WP_044453202.1\|56150_57059_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_044453203.1\|57153_58014_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_044453204.1\|58169_58742_+	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_044453205.1\|58782_59664_-	transcriptional regulator LrhA	NA	NA	NA	NA
WP_044453206.1\|59885_60710_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_044453207.1\|60725_61418_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_044453208.1\|61420_62113_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_044457551.1\|62141_62909_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-33	39.3
WP_044453209.1\|63043_63640_+	cysteine dioxygenase family protein	NA	NA	NA	NA
WP_044453210.1\|63857_65459_+	sulfurtransferase	NA	NA	NA	NA
WP_044453211.1\|65627_66827_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_052810837.1\|67052_68288_-	class C beta-lactamase	NA	NA	NA	NA
WP_044453212.1\|68640_69846_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

2109163 : 2176553

uncultured_Mediterranean_phage(12.5%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044453212.1\|2109163_2110369_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044453341.1\|2110615_2111836_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	4.9e-209	85.0
WP_044455357.1\|2112461_2113712_+	aspartate kinase	NA	NA	NA	NA
WP_044455358.1\|2114207_2114549_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_167370651.1\|2114676_2115924_+	MFS transporter	NA	NA	NA	NA
WP_063389880.1\|2116010_2116805_-	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	L7Y059	Megavirus	5.8e-25	31.6
WP_044455359.1\|2117118_2119023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044455360.1\|2119025_2120081_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_044455361.1\|2120082_2121180_+	ABC transporter permease	NA	NA	NA	NA
WP_044455362.1\|2121176_2122772_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.5e-19	31.0
WP_072617459.1\|2123094_2123796_+	C40 family peptidase	NA	NA	NA	NA
WP_072617563.1\|2123899_2124943_-	patatin-like phospholipase family protein	A0A141ZNL4	Faustovirus	1.2e-06	23.4
WP_044455363.1\|2125577_2126630_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_157123117.1\|2126729_2128090_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.7e-75	54.0
WP_044455366.1\|2128245_2129262_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_039399112.1\|2129537_2130800_-	transcription termination factor Rho	NA	NA	NA	NA
WP_044455367.1\|2130990_2131317_-	thioredoxin TrxA	A0A1J0GW78	Streptomyces_phage	3.6e-18	44.7
WP_167370653.1\|2131801_2132197_-	thioredoxin family protein	NA	NA	NA	NA
WP_044457963.1\|2132831_2134784_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	2.1e-44	43.4
WP_044457964.1\|2134947_2135274_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_044455369.1\|2135309_2135912_+	recombination protein RecR	NA	NA	NA	NA
WP_044455370.1\|2136162_2137521_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_044455371.1\|2138225_2138774_+	hypothetical protein	NA	NA	NA	NA
WP_157123119.1\|2138779_2139286_+	hypothetical protein	NA	NA	NA	NA
WP_044455372.1\|2139282_2139924_+	hypothetical protein	NA	NA	NA	NA
WP_052810969.1\|2139954_2141337_+	hypothetical protein	NA	NA	NA	NA
WP_084070504.1\|2141455_2142103_+	C39 family peptidase	NA	NA	NA	NA
WP_157123121.1\|2142115_2142865_+	peptidase C39	NA	NA	NA	NA
WP_044457969.1\|2143051_2144383_+	hypothetical protein	NA	NA	NA	NA
WP_157123123.1\|2144630_2145446_-	hypothetical protein	NA	NA	NA	NA
WP_084070507.1\|2145473_2146226_+	response regulator transcription factor	NA	NA	NA	NA
WP_044457971.1\|2146584_2147787_+	CoA transferase	NA	NA	NA	NA
WP_044455374.1\|2147952_2148984_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044457972.1\|2148983_2149796_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.3e-29	35.2
WP_044455375.1\|2149970_2150789_+	ABC transporter permease	NA	NA	NA	NA
WP_044455376.1\|2151091_2151853_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.9e-67	50.6
WP_044455377.1\|2151849_2153088_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.6e-35	45.6
WP_157123331.1\|2153173_2153938_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	2.1e-08	35.0
WP_044455379.1\|2153953_2155054_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	3.6e-33	34.5
WP_044455380.1\|2155201_2155978_+	3'-5' exonuclease	NA	NA	NA	NA
WP_072617564.1\|2156151_2157636_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	9.1e-24	25.0
WP_044455381.1\|2157865_2158567_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_039399079.1\|2158972_2159398_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.3e-20	42.9
WP_044455382.1\|2159457_2160579_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_052810973.1\|2160840_2161917_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174556786.1\|2161953_2163216_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_044455384.1\|2163279_2164656_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_044455385.1\|2164688_2165318_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_044457975.1\|2165416_2166607_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_044455386.1\|2166686_2168024_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_010807283.1\|2168150_2168387_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_044457976.1\|2168486_2169656_+	GTPase HflX	NA	NA	NA	NA
WP_167370654.1\|2169875_2171228_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_044455388.1\|2171240_2172140_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_052810974.1\|2172211_2172400_+	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_044455389.1\|2172440_2173601_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_044455390.1\|2173674_2175015_+	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	9.6e-73	36.6
WP_044455391.1\|2175042_2175579_+	phosphoribosyltransferase	NA	NA	NA	NA
WP_157123125.1\|2175854_2176124_+	hypothetical protein	NA	NA	NA	NA
WP_072617460.1\|2176157_2176553_+\|transposase	transposase	A0A218MNG9	uncultured_virus	3.5e-07	35.3

DBSCAN-SWA_3

2620852 : 2694419

Bacillus_phage(22.22%)

bacteriocin,integrase,transposase,tRNA

attL 2610668:2610684|attR 2645293:2645309

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2610668:2610684	attL	NA	NA	NA	NA
WP_157123156.1\|2620852_2622213_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.7e-75	54.0
WP_044455699.1\|2622293_2623280_-	oxidoreductase	NA	NA	NA	NA
WP_084070554.1\|2623401_2624553_-	nitronate monooxygenase	NA	NA	NA	NA
WP_044458045.1\|2624564_2625698_-	nitronate monooxygenase	NA	NA	NA	NA
WP_084070564.1\|2625910_2627092_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_052810999.1\|2627205_2628255_+	DNA-binding protein	NA	NA	NA	NA
WP_044455701.1\|2628219_2629770_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_044455702.1\|2629942_2631088_+	HlyD family secretion protein	NA	NA	NA	NA
WP_084070565.1\|2631084_2632794_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_044455703.1\|2633043_2633613_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157123158.1\|2633602_2634949_-	HipA domain-containing protein	NA	NA	NA	NA
WP_044455705.1\|2634999_2635287_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044455706.1\|2635440_2637561_-	bifunctional diguanylate cyclase/phosphodiesterase	G3MA91	Bacillus_virus	2.3e-20	29.1
WP_063389830.1\|2638010_2639792_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_084071004.1\|2639772_2641314_+	DUF2252 domain-containing protein	NA	NA	NA	NA
WP_044458051.1\|2641472_2643032_+	diguanylate cyclase	NA	NA	NA	NA
WP_044455707.1\|2643363_2644263_+	BON domain-containing protein	NA	NA	NA	NA
WP_044455708.1\|2644539_2644902_+	BON domain-containing protein	NA	NA	NA	NA
WP_044455709.1\|2645096_2645537_+	PRC-barrel domain-containing protein	NA	NA	NA	NA
2645293:2645309	attR	NA	NA	NA	NA
WP_167370682.1\|2645580_2646779_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	4.2e-104	66.2
WP_044455710.1\|2647228_2647384_+	DUF3309 domain-containing protein	NA	NA	NA	NA
WP_044455711.1\|2647431_2647671_+	ChaB family protein	M1J491	Spodoptera_littoralis_nuclear_polyhedrosis_virus	5.2e-06	45.1
WP_044455712.1\|2648179_2649394_+	MFS transporter	NA	NA	NA	NA
WP_052811001.1\|2649291_2650647_-	MATE family efflux transporter	NA	NA	NA	NA
WP_044458052.1\|2650883_2651519_-	DUF2239 family protein	NA	NA	NA	NA
WP_044455714.1\|2651649_2652945_-	HipA domain-containing protein	NA	NA	NA	NA
WP_052811002.1\|2653086_2653383_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044455715.1\|2653498_2653915_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_044455716.1\|2654056_2654242_-	hypothetical protein	NA	NA	NA	NA
WP_052811003.1\|2654801_2655599_-	DUF2092 domain-containing protein	NA	NA	NA	NA
WP_044458055.1\|2656390_2656705_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_044455719.1\|2656701_2657523_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_052811004.1\|2657554_2658121_+	hypothetical protein	NA	NA	NA	NA
WP_044455720.1\|2658256_2658838_+	hypothetical protein	NA	NA	NA	NA
WP_157123160.1\|2658825_2660373_-	heavy metal sensor histidine kinase	NA	NA	NA	NA
WP_044455722.1\|2660410_2661091_-	heavy metal response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	5.7e-05	24.0
WP_084070568.1\|2661100_2662654_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_084070570.1\|2662650_2663940_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_072617469.1\|2667558_2668701_+	Dyp-type peroxidase	NA	NA	NA	NA
WP_044455723.1\|2668697_2669528_+\|bacteriocin	bacteriocin family protein	NA	NA	NA	NA
WP_044455724.1\|2669624_2671373_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_052811005.1\|2671414_2672851_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	8.8e-16	24.3
WP_044455725.1\|2672847_2673507_-	response regulator transcription factor	NA	NA	NA	NA
WP_044458062.1\|2673821_2676110_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_044455726.1\|2676207_2677215_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_084070573.1\|2677442_2679368_+	sulfatase-like hydrolase/transferase	A0A2K9L1A5	Tupanvirus	8.2e-25	23.4
WP_044458063.1\|2679554_2680175_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_157123340.1\|2680196_2682224_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_084070575.1\|2682349_2683423_-	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_052811006.1\|2683670_2684096_+	hypothetical protein	NA	NA	NA	NA
WP_044455728.1\|2684208_2685213_-	sterol desaturase family protein	NA	NA	NA	NA
WP_044458067.1\|2685225_2686191_-	beta-propeller fold lactonase family protein	A0A2H4JCI3	uncultured_Caudovirales_phage	7.5e-11	56.9
WP_044455729.1\|2686435_2687014_-	PadR family transcriptional regulator	H9EB19	Vibrio_phage	2.3e-07	39.2
WP_044455730.1\|2687192_2689214_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_052811007.1\|2689437_2691213_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_044455731.1\|2691317_2692712_-	CoA transferase	NA	NA	NA	NA
WP_039396791.1\|2693435_2694419_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

3305672 : 3371402

Stx2-converting_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044453212.1\|3305672_3306878_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_052811064.1\|3306926_3307658_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_052811065.1\|3307721_3309023_+	collagen-like triple helix repeat-containing protein	NA	NA	NA	NA
WP_044456103.1\|3309364_3310822_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_084070659.1\|3310966_3311449_-	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_044458203.1\|3311672_3312095_-	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_052811066.1\|3312167_3312818_-	DUF2939 domain-containing protein	NA	NA	NA	NA
WP_044458205.1\|3313420_3314518_-	cell division protein ZapE	NA	NA	NA	NA
WP_044456105.1\|3314616_3316047_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	3.0e-48	28.2
WP_044456106.1\|3316141_3317404_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_157123198.1\|3317493_3320358_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_044456107.1\|3320973_3321381_-	hypothetical protein	NA	NA	NA	NA
WP_044456108.1\|3321458_3323093_-	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.6e-11	37.6
WP_044458207.1\|3323428_3323731_+	hypothetical protein	NA	NA	NA	NA
WP_044456109.1\|3323850_3324483_+	LysE family translocator	NA	NA	NA	NA
WP_044458208.1\|3324908_3327248_+	penicillin-binding protein 1A	NA	NA	NA	NA
WP_044456110.1\|3328300_3328624_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_072617480.1\|3328685_3330341_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_167370696.1\|3330841_3331612_+	TSUP family transporter	NA	NA	NA	NA
WP_044456113.1\|3331644_3333333_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	4.8e-61	33.6
WP_157123199.1\|3333833_3334442_+	hypothetical protein	NA	NA	NA	NA
WP_072617481.1\|3335154_3336099_+	FRG domain-containing protein	NA	NA	NA	NA
WP_072617482.1\|3336289_3336631_-	hypothetical protein	NA	NA	NA	NA
WP_157123200.1\|3337869_3339039_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-37	32.0
WP_167370682.1\|3339444_3340643_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	4.2e-104	66.2
WP_167370622.1\|3340766_3341150_+\|transposase	transposase	NA	NA	NA	NA
WP_044453173.1\|3341146_3341494_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.5e-35	66.0
WP_044453172.1\|3341552_3343139_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.7e-151	54.4
WP_157123201.1\|3343696_3344980_+	hypothetical protein	NA	NA	NA	NA
WP_052811069.1\|3345242_3348530_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_044456119.1\|3348960_3349470_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_167370664.1\|3349535_3350009_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_044456120.1\|3350157_3350373_-	hypothetical protein	NA	NA	NA	NA
WP_044456121.1\|3350659_3351055_+	hypothetical protein	NA	NA	NA	NA
WP_044456122.1\|3351051_3351375_-	hypothetical protein	NA	NA	NA	NA
WP_044456124.1\|3352024_3352510_-	DUF934 domain-containing protein	NA	NA	NA	NA
WP_044456125.1\|3352499_3354506_-	DUF2849 domain-containing protein	NA	NA	NA	NA
WP_044458215.1\|3354725_3354971_+	hypothetical protein	NA	NA	NA	NA
WP_044456126.1\|3354977_3355337_-	hypothetical protein	NA	NA	NA	NA
WP_044456127.1\|3355547_3356636_+	hypothetical protein	NA	NA	NA	NA
WP_052811071.1\|3356648_3358136_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.0e-14	35.9
WP_044456128.1\|3358293_3359064_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_052811072.1\|3359196_3359592_+	BLUF domain-containing protein	NA	NA	NA	NA
WP_044456129.1\|3359821_3360868_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044456130.1\|3360948_3362085_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_044458218.1\|3362077_3363505_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_044456131.1\|3363530_3363953_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_044456132.1\|3363973_3364768_-	ABC transporter permease	NA	NA	NA	NA
WP_044456133.1\|3364799_3365705_-	ABC transporter permease	NA	NA	NA	NA
WP_044458219.1\|3365697_3366792_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.8e-27	32.7
WP_044458220.1\|3367123_3367969_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_044456134.1\|3368171_3368648_+	OsmC family protein	NA	NA	NA	NA
WP_044456135.1\|3369311_3369911_+	flavin reductase family protein	NA	NA	NA	NA
WP_044453212.1\|3370196_3371402_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

5373677 : 5382380

Klosneuvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044457391.1\|5373677_5374961_+	nucleotide sugar dehydrogenase	A0A218MKK1	uncultured_virus	6.1e-08	21.7
WP_044457392.1\|5375076_5376108_+	SDR family oxidoreductase	A0A2K9L4U8	Tupanvirus	4.6e-75	45.6
WP_044457393.1\|5376144_5377257_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_044457394.1\|5377356_5379288_+	asparagine synthase (glutamine-hydrolyzing)	A0A1V0SHV8	Klosneuvirus	6.5e-22	24.6
WP_044457395.1\|5379376_5380507_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	4.1e-101	46.2
WP_044457396.1\|5380499_5381510_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.2e-43	37.4
WP_044457397.1\|5381525_5382380_-	SDR family oxidoreductase	A0A2P1ELT6	Moumouvirus	1.1e-29	30.3

DBSCAN-SWA_6

5387373 : 5395675

Bathycoccus_sp._RCC1105_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044457402.1\|5387373_5388540_-	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES46	Bathycoccus_sp._RCC1105_virus	2.3e-46	32.8
WP_072617531.1\|5388536_5389469_-	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	3.0e-57	37.3
WP_044457404.1\|5389474_5390566_-	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	1.5e-137	71.1
WP_044457405.1\|5390562_5392008_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.0e-43	26.1
WP_044458601.1\|5392125_5394066_-	polysaccharide biosynthesis protein	K7Y9E1	Megavirus	3.0e-19	27.1
WP_044457406.1\|5394086_5394647_-	sugar transferase	NA	NA	NA	NA
WP_044458602.1\|5394709_5395675_-	SDR family oxidoreductase	Q76TT0	Molluscum_contagiosum_virus	3.5e-08	31.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010898

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16945 : 54657

Stx2-converting_phage(33.33%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044456547.1\|16945_17965_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044453172.1\|18193_19780_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.7e-151	54.4
WP_044453173.1\|19838_20186_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.5e-35	66.0
WP_084070255.1\|20182_20671_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	9.3e-10	34.5
WP_044458720.1\|21587_21941_+	hypothetical protein	NA	NA	NA	NA
WP_044458694.1\|22024_22474_-	DUF3318 domain-containing protein	NA	NA	NA	NA
WP_044458695.1\|22574_22919_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_044458696.1\|23049_23358_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_044458697.1\|24107_24320_+	CsbD family protein	NA	NA	NA	NA
WP_044458698.1\|24661_25546_+	hypothetical protein	NA	NA	NA	NA
WP_044458700.1\|26325_26910_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_044458701.1\|26906_27665_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_052811327.1\|27652_28693_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_044453212.1\|30666_31872_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157123390.1\|32617_32857_-	hypothetical protein	NA	NA	NA	NA
WP_044458705.1\|33137_33428_-	DUF2471 family protein	NA	NA	NA	NA
WP_157123391.1\|33532_33874_-	hypothetical protein	NA	NA	NA	NA
WP_044458706.1\|34268_35801_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	9.1e-35	30.5
WP_084071106.1\|36650_38462_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.4e-26	25.8
WP_044458708.1\|39218_39845_-	hypothetical protein	NA	NA	NA	NA
WP_072617597.1\|40506_41031_+	plasmid stabilization protein	NA	NA	NA	NA
WP_044458723.1\|41079_41433_+	hypothetical protein	NA	NA	NA	NA
WP_052811329.1\|41517_41967_-	DUF3318 domain-containing protein	NA	NA	NA	NA
WP_044458695.1\|42067_42412_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_044458710.1\|42542_42803_-	DUF883 family protein	NA	NA	NA	NA
WP_167370682.1\|42828_44026_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	4.2e-104	66.2
WP_044458711.1\|44320_45166_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-06	25.0
WP_167370705.1\|45281_47369_+	PAS domain S-box protein	NA	NA	NA	NA
WP_044458727.1\|47373_48366_-	zinc-dependent alcohol dehydrogenase family protein	A0A2K9V7Y5	Bandra_megavirus	7.5e-14	31.2
WP_052811322.1\|48402_49203_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_044458650.1\|49331_49985_-	response regulator transcription factor	NA	NA	NA	NA
WP_044458651.1\|50139_50610_-	universal stress protein	NA	NA	NA	NA
WP_052811323.1\|50617_51169_-	universal stress protein	NA	NA	NA	NA
WP_044458652.1\|51850_52138_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_072617598.1\|52408_53455_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157123396.1\|53446_54657_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	9.2e-99	63.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010897

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010898

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection