CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010836	Sphingomonas hengshuiensis strain WHSC-8 isolate soil of Hengshui Lake chromosome, complete genome	8 crisprs	cas3,csa3,RT,WYL,DinG,DEDDh	3	1	7	0
NZ_CP010837	Sphingomonas hengshuiensis strain WHSC-8 isolate soil of Hengshui Lake plasmid unnamed, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010836_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010836_1

1346967-1347059

Orphan

Consensus_repeat	Method
GCCTAAACTTCCTAAACTTCGCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010836_1

>merge|NZ_CP010836|1|1346967-1347059|CRISPRCasFinder
GCCTAAACTTCCTAAACTTCGCATCCCCTCGCCAGCCCGTGGCGAGGCCTGCCGAGAAACGCGCATACGCCTAAACTTCCTAAACTTCGCTCG

>NZ_CP010836|1|1|1346967-1347059|CRISPRCasFinder
GCCTAAACTTCCTAAACTTCGCATC	CCCTCGCCAGCCCGTGGCGAGGCCTGCCGAGAAACGCGCATAC
GCCTAAACTTCCTAAACTTCGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010836.1\|WP_044330978.1\|1342981_1344022_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP010836.1\|WP_044330983.1\|1347184_1348012_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP010836.1\|WP_044330969.1\|1338410_1339529_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP010836.1\|WP_044330999.1\|1353010_1353748_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|273824
NZ_CP010836.1\|WP_044330973.1\|1341561_1342071_-\|rod-shape-determining-protein-MreD	unknown	unknown	unknown
NZ_CP010836.1\|WP_044330994.1\|1351460_1351829_-\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|227742
NZ_CP010836.1\|WP_044330987.1\|1349009_1349609_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP010836.1\|WP_162184703.1\|1332360_1333392_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP010836.1\|WP_044330985.1\|1348065_1348716_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225218
NZ_CP010836.1\|WP_052507779.1\|1333581_1336500_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP010836.1\|WP_052507780.1\|1336528_1337815_+\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP010836.1\|WP_044330980.1\|1344171_1345962_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP010836.1\|WP_044330997.1\|1352021_1352957_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP010836.1\|WP_052507782.1\|1350392_1351331_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044330975.1\|1342070_1342961_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP010836.1\|WP_052507781.1\|1346196_1346733_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044331001.1\|1353777_1354311_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044330993.1\|1349860_1350241_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP010836.1\|WP_010543816.1\|1349621_1349846_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP010836.1\|WP_044330971.1\|1339528_1341562_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573

Protein	Function_ID	Function_description	E-value
NZ_CP010836.1\|WP_044330978.1\|1342981_1344022_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP010836.1\|WP_044330983.1\|1347184_1348012_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	2.27144e-146
NZ_CP010836.1\|WP_044330969.1\|1338410_1339529_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	8.98951e-142
NZ_CP010836.1\|WP_044330999.1\|1353010_1353748_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|273824	TIGR01830, 3-oxoacyl-_reductase_FabG, 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. [Fatty acid and phospholipid metabolism, Biosynthesis].	8.80093e-117
NZ_CP010836.1\|WP_044330994.1\|1351460_1351829_-\|RcnB-family-protein	gnl\|CDD\|227742	COG5455, COG5455, Predicted integral membrane protein [Function unknown].	9.01517e-14
NZ_CP010836.1\|WP_044330987.1\|1349009_1349609_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	2.05082e-61
NZ_CP010836.1\|WP_162184703.1\|1332360_1333392_+\|FecR-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	5.98669e-34
NZ_CP010836.1\|WP_044330985.1\|1348065_1348716_-\|hypothetical-protein	gnl\|CDD\|225218	COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown].	1.89315e-17
NZ_CP010836.1\|WP_052507779.1\|1333581_1336500_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	7.68361e-22
NZ_CP010836.1\|WP_052507780.1\|1336528_1337815_+\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	8.79163e-09
NZ_CP010836.1\|WP_044330980.1\|1344171_1345962_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP010836.1\|WP_044330997.1\|1352021_1352957_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	8.94229e-120
NZ_CP010836.1\|WP_044330975.1\|1342070_1342961_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	1.47164e-64
NZ_CP010836.1\|WP_044330971.1\|1339528_1341562_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP010836.1\|WP_044330993.1\|1349860_1350241_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	5.72136e-47
NZ_CP010836.1\|WP_010543816.1\|1349621_1349846_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	2.83714e-36

>NZ_CP010836.1|WP_052507781.1|1346196_1346733_+|hypothetical-protein
MTAVIKGVRIQNAIAPRSVVHCAASLAQNRAFVQPRDDKSAGDSVAKIMIRDLDNGILAFDLRHLLRVLAPHSLAAVWTISSPDESRFEATGAGGIRLEELAESSSAIGGDELLVLADDTVQVIWGNFVGKLPQNPHEEWLTIRAFDSSFYEVESSDEASIAHVVSHFCDVRFVEGTR
>NZ_CP010836.1|WP_044330980.1|1344171_1345962_+|DNA-mismatch-repair-endonuclease-MutL
MSIRRLPEHLVNRIAAGEVVERPASALKELVENAIDAGATRVSVRLAAGGTELVEVIDDGCGMAPAEMALALERHATSKLPDDAIDQVTTLGFRGEALPSIASVARLTLESRARGGADGWALTIDNGDRVAEGPAALPPGTRVRVEQLFARVPARRKFLRSPRAEYAACLDVVKRLAMARPDIGFSVEHDGRRVLSVQPGETRPERVAGLTDRDLRENSVAIDFEREGLVLGGVAGLPTFNRGVADHQYLFVNGRPVKDRLLAGAVRGAYAEMLARDRHPVVALFLDVPADAVDVNVHPAKTEVRFRDPALARGLIVSGLRRALDEAGHRSVQRPSEAALGMWQQEGAGPPPTPQLWDASPRAPGVLPEMTRHYGGVSDRRATFLAPPQARAEPAYAAVPETTSFPMGVARGQVAKTYIVAEAEDGLVLVDQHAAHERLVLERMRRGVLGNGVASQALLLPEVVELDEPACDRLEARIPELAQFGLELERFGPQAMLVRAMPAALGQGDVHGLVTDLADELASFDEALSLKERLDAVMGTMACHGSVRAGRILSVAEMNALLREMEATPHSGQCNHGRPTWVKLAHGDIEKLFGRK
>NZ_CP010836.1|WP_044330978.1|1342981_1344022_-|rod-shape-determining-protein
MAFSRFFKFMSHDMAIDLGTANTVVYLRGRGVVLNEPSVVAVETLNGVKRVKAVGDDAKLMMGKTPGSIEAIRPLRDGVIADIDVAEEMIKHFIRKVHGQRRFMRWPQIVICVPSGSTSVERRAIRDAASNAGASQVWLIEEPMAAAIGADMPVTEPIGSMVVDIGGGTTEVAVLSLRGLAYSTSVRVGGDKMDESIVSYVRRNHNLLIGEATAERIKQEVGVAKPPADGIGQTIHIKGRDLVNGVPKEIQINQGQIAEALSEPVGTIVEGVRIALENTAPELAADIVDQGIVLTGGGALLQGIDEVLRDETGLPVTVAENPLTCVALGTGRALEDPVFRGVLIQV
>NZ_CP010836.1|WP_044330975.1|1342070_1342961_-|rod-shape-determining-protein-MreC
MAPPRNRRPGFSRRAQYGLFLGYVGLVGGALIATALLLLSTFNPPAFAAVRGAFAEVTTPISSGFAWVRSGIAGVPEGVGSYFNVRNENARLKKQLADNDILVSRARTLNQENRSLRELLKLRDATPESVVAARLVNSSISSTRRYATLNAGAWQGVRHGQPVRQAAGLIGQVIETSPNTARVLLIVDAESIVPVRRTSDGMPAIASGRGDGLLDIRSASVATLTFRPGDTFVTSGTGGVFAPNIPVARVIRTQRDVAIGQPTANPDALDFALVQQTFLPPPAPSPTPSPSASTAP
>NZ_CP010836.1|WP_044330973.1|1341561_1342071_-|rod-shape-determining-protein-MreD
MTSDFIPLGRAERPPRARWLAPLSIVLGSMMTLLPIVSVVPFLPPFGLMLLLGWRLTRGDSMPVWASVPLGFFDDILSGQPLGSAMLLWPMCILVIDVLDTRLVWRDFWQDWLIAAGGMAFALIAGRLIALPFSAHVDTALLLQIVISVSLFPVISRFCSWLDSDVKKS
>NZ_CP010836.1|WP_044330971.1|1339528_1341562_-|penicillin-binding-protein-2
MVRITEASQAYSFSRRAIVLGAMQGGVALVLAGRMAWLSVFENERYRLMAESNRVNLTLTPPRRGWIVDRNNIPIANNRTDFRVDIIPDRLENREQVLATLQQILRLTPEDMARIQVDLKRAAGFQPVQVIENLDWDRFAAVSVRLPELPGVAPTRGFARNYPLGAGVGHLVGYVGTASAEQFKKDKDPLLVTPGFKLGKDGIEKMLEDDLRGTPGAKRVEVTAHGRLVRELATRPDEPGKNVKLTIDALLQEYVARRLGTNSGSATVIDCTTGDILAMVSMPAYDPNSFSDGISQSEWKMLSEDDHVPLMNKVLQGLYPPGSTVKPMNGLALMQAGVDPNMRINCSGALRVGNGVFHCHRRRGHGPLDLKNAIMQSCDIYFYEMVRRVGYDAIAPVARNLGLGQKFDLPFSTQRYGTVPDSEWKLKRYKEKWTVADSLNASIGQGYVLTNPLQLAVMASRLASGRALIPRLLADAPRQEAAALGSTPEQLAIIRDAMFGVVNSGGTGGASRIQVPGVTLAAKTGTAQVRRITMAERRSGVLGNASLPFKLRDHALFVCFAPADNPKYAAGIVLEHNGHTVRNLDTPMIGRDIMTFLFDRDRAIKSLREVEPTWGGDYNQRAEAQAKAFKAAQAAPPPPAPEDAEEAASHVASAAANATTSNTIDSEAAARGSVEGD
>NZ_CP010836.1|WP_044330969.1|1338410_1339529_-|rod-shape-determining-protein-RodA
MSTLGPGIIPRPLAQLPWKVILLVIAIGMFGLVVLYSAAGGNLQPWASLQGIKLFAFLAMAILLSRVPESFWALGAFPMYLVIVLMLVGVELLGAVAGGSQRWLDLGIIRLQPSELMKPVIVLAAARFYELLPVGEIRKFGAIWPAAVLIGVPAGLVMLQPDLGTALMITGCGVMVVFLAGVPLRLFIGGALALAVSIPLAVNFLLHEYQRNRVLTFLDPESDPLGTGYHISQSKIAIGSGGIFGKGFLNGTQSHLDYLPEGHTDFALATMMEEWGLMGGLFLIIAFSLLIGWGISVSLRAKSRFGRLTAAGLSGTIFLYASINMAMVMGLAPVVGVPLPLISFGGTAVMTIMICFGILLSIDRESRQVSRW
>NZ_CP010836.1|WP_052507780.1|1336528_1337815_+|VCBS-repeat-containing-protein
MTIATTMAILLAGLAHLSGPALREKGDRWSQWNVAGAAQDAVVLPVCTGPYQVSSGDLNGDGLPDLIVPCRGELLSPKLARPANDQLTVYLNPGKKGAWRRRDFTVGFGPYHSATGDLDGDGLPDIVVPNYQSNDDRDLVILYGAKDRERLFEPTTYLGFDTRDLVNEYGLDAEGQPRYSTPGLTSAIIADVNSDGRPDIVAASYQSNVFYVLLNEGGRRFRTIRYPQQAAPYDQMLGGPRDIAPADFDGDGVLDLAFSMYESNLVEVWRGDGKGGFAPWRRAPSFGRIPYHLKAGDLDGDGRADIVVGNRSTSDNVVVLRNRSDRFVYDGSFGPQTARRGETTADEIRDVVLADLDGDGILDLIAAARESGKLVFWRGTGRTGFNQAFADRRVAEFPGKGPRGIAVLPGAVAVIFYNSSEIAILKGP
>NZ_CP010836.1|WP_052507779.1|1333581_1336500_+|TonB-dependent-receptor
MFEVAAQPASTGVKALARQAGIQVIVAGADVDGRTTNRVTGKLDTREALEALIANTGLIIRSFDGRTAVLGLETADAASELVVTGSRVVRNGYQAPTPLTVLSGDEIARSAQVNIAEQINRLPALAGSNNPRNTASNISGGFMGISTLNLRNLGATRTLVLLDSQRLPAASLNGLVDANSIPSALVKRVDIVTGGASAAWGSDAVAGVVNFVLDRDFTGVKGSVQGGVTTYGDDKNYRVSLSAGTGFADGRGHFLISAENWYSEGIEGMPRDWYRGRKTLFNPNYTATNGQPEYLVRDGVGYTTVAPGGIVTTGPLRGLYFGPGGTPGQLNFGSIVNNPFMVGGDWRYTDFGNGPQNLDPEVSHKSVFSRLSYGITDSVELFGEFSYVQAKTKTTGTPMFNFGGLIIQRDNAFLPDAVRQRMVDLGESTLNVGSWNAAIGGIVTETRHDLYRYVLGAEGRFNGFGTDWRWNIRANRNVSKFFNGTTLPITANYRAAIDAVRAPSGAIVCRSTLTDPGNGCVPLNILGTGVASSAGLDYVMGHSYLNATITQDIVSATVRGEPMSTWAGPVSMAFGVEHRREEESGQSDPLSLKNSYWAGNYKPIHGAYTVREAFLEVVVPLAANTSWARSLDLNAAIRATDYSTSGYVTTWKAGLTYAPVPDIRFRVTRSRDIRAGNLSELFQAGQTNTTTLVDPFKDNQSYTVFQTTVGNPVVRPEKADTLNLGAVFQPGFLPGLSASVDYFDIQVKDAIATLGSSTIINQCFQGNASLCSLIERDSAGFMTEIFLRPINLARQTVRGLDFELGYRMPVLGDGVLSFRGLGTRYLESSSDNGINPPTSNLGENTGVPTWRYLAEIALDKGPASLSVTGRGFSDGVISNSFIECTTNCPTSTSLNRTIDNNHVDGAFYIDLSASYAINDGVKFYIAVDNVANKAPAPYAPSGTGIGSAQIGISQTYYDVIGRSFRGGVRFQF
>NZ_CP010836.1|WP_162184703.1|1332360_1333392_+|FecR-domain-containing-protein
MASTVLSDDMNEQAAHWAARALDGEIPAAMAGDFGAWMAADRRHRGAYLRARAALYAIEDTVLEHRDAARGDRRPAIVAVARKEDDAPVDASRPLGRGWSQRIMVGGTLAASLALAVGLGVPALSPTRVPPRPAVGRALTLADGSVATLGDGARIDFAMRDGVRKVVLLQGEATFDVAKDRQHPFVVQSGDVYAQATGTHYSVRRVGAAGGAVRVKEGSVLVWGRDERDQAVVLRAGDALTLEPGTGHPDRTEAARPASPPPPPPPPPELAQISLDNVTIEAAARRFNRINRAQIVIADPAVGQVRIVGLFRANDPERFAEAAAAVAGAIVEVRGDRIEVKMK
>NZ_CP010836.1|WP_044330983.1|1347184_1348012_-|type-I-methionyl-aminopeptidase
MTLYTEVTADTPRSRTNAIKLYGPDAFEGMRRAGRIAAETLDALVPLVVPGVSTAALDDFVRDAIVAAGAIPINIGYKGYAHATCISVNHVVCHGIPGAKTLSEGDILNIDLTAVVDGWHGDTSRMFLVGDVPLKARRLVDVTYECMMRGIEQAVPGNHLGDIGHAIQRHAEKHRYAVVRDFVGHGVGLVYHDQPDVLHYGRPGTGPELRPGMIFTIEPMINIGKPEVKILDDDWTAVTRDRSLSAQFEHSIGITEQGHEIFTLSPKGLDRPPYR
>NZ_CP010836.1|WP_044330985.1|1348065_1348716_-|hypothetical-protein
MHICRIAIAALLGCTPLLAAATADRADIERAVLDRINFARTQPRAYAEQLRDYARWFDGRIVRLPGEEHDVATIEGRSAVDEAIAFLERQPPLPPLTRADLLTLAARDHADAQGETGAVGHASAAGSTPGERMRRRGGGIYVGEGIAYGFADPDMVVRQLIIDDGVRGRGHRALVFQPGYRFAGVGCGPHRGYRYMCVVDFSATVNGQPVLPAAPR
>NZ_CP010836.1|WP_044330987.1|1349009_1349609_-|50S-ribosomal-protein-L9
MEVILLERVEKLGAIGDVVKVKDGFARNFLLPNKKALRSNAANRKVFEANRARIESDNAARRSVAEKDADSFKDAAVTLIRQASNTGQLYGSVAARDLVDALVADGHKVTKAQVVLDRPIKAIGVYEVRVALHPEVSVTVKVNVARSPEEAEMQSQGVDVMSAMFEKDEAGFIEDYDPNAEPGATAEVQSAPAEDEAQG
>NZ_CP010836.1|WP_010543816.1|1349621_1349846_-|30S-ribosomal-protein-S18
MARPFFRRRKSCPFSAKDAPRIDYKDVRLLQGFVSERGKIVPSRITSVSAKKQRELAQAIKRARHLGLLPYIVK
>NZ_CP010836.1|WP_044330993.1|1349860_1350241_-|30S-ribosomal-protein-S6
MALYEHVFLARQDLAQAQVDALAETATKIVEDNNGKVVKTETWGLRSLAYRIAKNRKAHYVMLEIDAPAGVVAELERQTQINEDVIRYMTVKVDTLEEGPTVMMRKGADRERRGRRDRDDAGFGGE
>NZ_CP010836.1|WP_052507782.1|1350392_1351331_-|hypothetical-protein
MIRAILLAALALALAPSASHAAPDPEPSALAPDFEGKVAYFGNYTGISSVLASQPAGARDIPCPYRDNRCRKATVGGGVKIVLEFHGERVIGFFYAVDGFRGPEGLKIGSLTGRRKGDGSCELFQADGSRWTGICGSKEFVGDISTDAGIPNAFDVHFNTLAMHMRDLGWIRQQRWEASRRDQRLRTLDSKLRSGTPEEKFFAAAELESFSWTPAGIPGDRFGPPEWPRKFKKNRQYDLRSEYPLAGGGTGWVMVRFRGRDVECVATPRRSCGPIREPLPFDIASEDDPEGWFTADGRVITDLRAAEPAKAP
>NZ_CP010836.1|WP_044330994.1|1351460_1351829_-|RcnB-family-protein
MKKFILGIVAATLVATPALAAAPQQQRQETQRTVVKQRPNGTTVVKQRTVQRGPQQNQYRNWKRGERFDSRQARNYRQIDYRKYRGLKAPPRGYRYVQSGNDAVLVGVTSGIISAVFANMIR
>NZ_CP010836.1|WP_044330997.1|1352021_1352957_+|ACP-S-malonyltransferase
MRAFIFPGQGSQAVGMGSALAAASPHAREVFQEVDEALGQSLSKLMAEGPEDQLMLTANAQPAIMANAIAVLRVLEREGGIRLAEVADFVAGHSLGEYTALCAAGSLDLSTTARLLRIRGEAMQAAVPVGIGAMAALLGADLTKAQAIADAAAEGQVCTVANDNDPTQVVISGHREAIERAIAIAKDHGAKRGILLPVSAPFHCPLMQPAAEAMAEALAAVAIQAPLVPLYANVTAAPVADPDTIRTLLVEQVTGMVRWRESVLAMHAAGVESFVELGGKVLGGMVKRIAPDAAPVSVVSMDDIEGLLKGL
>NZ_CP010836.1|WP_044330999.1|1353010_1353748_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MFDLTGMTALVTGASGGIGSAIAKALAAQGARLAVSGSNAEKLEAFRAELGGETVALPCNLSDGAAVDSLVPQAVAALGKLDILVNNAGVTRDNLAMRMKDEEWDAVIRVNLEAAFRLMRAAAKPMMKARFGRMISITSVVGATGNPGQANYAASKAGLVGMSKAMAQELASRNITVNCVAPGFIRSAMTDVLPEAQKTALLTRIPAGDLGSGDDIGAAVVYLASREAGYVTGQTLHVNGGMAML
>NZ_CP010836.1|WP_044331001.1|1353777_1354311_+|hypothetical-protein
MHILPIAALALAATALPAHAADLATLDCVVSKLDAAARSQIEADVVRNMAETGKRPTYAPAVKTALKEAATACATEHQWSNPAAGAAAIYALAKVGLPIAQRVVGERGFDAAALEDQFQALPEETRNRVLTAEENQALVRGAVTEEAQQTRENAELLNEYFAFLSTVQYAAQEFSQG

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Crispr_ID: NZ_CP010836_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010836_2

1958374-1958545

Orphan

Consensus_repeat	Method
CAGCGCCAGTGGAACGGTGGCGATCGCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP010836_2

>merge|NZ_CP010836|2|1958374-1958545|CRISPRCasFinder
CAGCGCCAGTGGAACGGTGGCGATCGCGGCCCGCAGCGCCAGCCCCAGGCCCAGCCGCAGCAACAGCCCCAGGCGGCGCCGCAACAGCGCCAGTGGAACGGTGGCGACCGCGCCGCGCGCCCGGATCGCGGTGCGCGCCCTGACCGCGGCCAGTGGAATGGCGGCGATCGTG

>NZ_CP010836|2|2|1958374-1958545|CRISPRCasFinder
CAGCGCCAGTGGAACGGTGGCGATCGCG	GCCCGCAGCGCCAGCCCCAGGCCCAGCCGCAGCAACAGCCCCAGGCGGCGCCGCAA
CAGCGCCAGTGGAACGGTGGCGACCGCG	CCGCGCGCCCGGATCGCGGTGCGCGCCCTGAC
CGCGGCCAGTGGAATGGCGGCGATCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010836.1\|WP_044331643.1\|1967003_1967234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_173426220.1\|1964080_1965571_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP010836.1\|WP_044331639.1\|1961212_1961893_+\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP010836.1\|WP_044331644.1\|1967332_1967629_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044336076.1\|1951774_1953301_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP010836.1\|WP_044331630.1\|1950659_1951076_-\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|319912
NZ_CP010836.1\|WP_044331632.1\|1953400_1954801_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226322
NZ_CP010836.1\|WP_044331640.1\|1961886_1964061_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_CP010836.1\|WP_044331633.1\|1954854_1955538_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044331634.1\|1955621_1956383_+\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|235916
NZ_CP010836.1\|WP_044331635.1\|1956404_1956623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044331638.1\|1959970_1961155_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP010836.1\|WP_044331629.1\|1948181_1950530_-\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
NZ_CP010836.1\|WP_044336078.1\|1959177_1959897_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|214780
NZ_CP010836.1\|WP_044331642.1\|1965596_1966880_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP010836.1\|WP_044331631.1\|1951230_1951734_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044331645.1\|1967671_1969069_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP010836.1\|WP_044331636.1\|1956690_1957491_-\|dioxygenase	unknown	unknown	gnl\|CDD\|153375
NZ_CP010836.1\|WP_077228531.1\|1957514_1958075_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP010836.1\|WP_044331646.1\|1969065_1970184_-\|DUF2336-domain-containing-protein	unknown	unknown	gnl\|CDD\|370815

Protein	Function_ID	Function_description	E-value
NZ_CP010836.1\|WP_173426220.1\|1964080_1965571_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP010836.1\|WP_044331632.1\|1953400_1954801_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|226322	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only].	1.01579e-119
NZ_CP010836.1\|WP_044331645.1\|1967671_1969069_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.12173e-41
NZ_CP010836.1\|WP_044336076.1\|1951774_1953301_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP010836.1\|WP_077228531.1\|1957514_1958075_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	2.33217e-59
NZ_CP010836.1\|WP_044331639.1\|1961212_1961893_+\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.39028e-100
NZ_CP010836.1\|WP_044331640.1\|1961886_1964061_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	1.63579e-51
NZ_CP010836.1\|WP_044331634.1\|1955621_1956383_+\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|235916	PRK07044, PRK07044, aldolase II superfamily protein; Provisional.	7.33977e-139
NZ_CP010836.1\|WP_044331638.1\|1959970_1961155_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	3.88047e-141
NZ_CP010836.1\|WP_044331629.1\|1948181_1950530_-\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
NZ_CP010836.1\|WP_044336078.1\|1959177_1959897_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|214780	smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.	1.21075e-23
NZ_CP010836.1\|WP_044331642.1\|1965596_1966880_+\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP010836.1\|WP_044331646.1\|1969065_1970184_-\|DUF2336-domain-containing-protein	gnl\|CDD\|370815	pfam10098, DUF2336, Uncharacterized protein conserved in bacteria (DUF2336). Members of this family of hypothetical bacterial proteins have no known function.	1.58942e-07
NZ_CP010836.1\|WP_044331636.1\|1956690_1957491_-\|dioxygenase	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	2.10304e-99
NZ_CP010836.1\|WP_044331630.1\|1950659_1951076_-\|methylmalonyl-CoA-epimerase	gnl\|CDD\|319912	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.	5.73623e-50

>NZ_CP010836.1|WP_077228531.1|1957514_1958075_+|(2Fe-2S)-binding-protein
MRVQCRFRKRHVSRYTQAMTRFTVNNQPVEYRMDPRTPLLWALRDASNLTGTKYGCGTGDCGACAVDVDGTLRLACQETIGALEGNFVTTIEGLSKDRSHPVQQALIAANVPQCGYCIPGIVMAASILLRNNRNPSEEDIKAGIPNICRCGIYPRLIGAITDAARIARGDAPVSLDAPSQVVEPSD
>NZ_CP010836.1|WP_044331636.1|1956690_1957491_-|dioxygenase
MTLPTLFIPHGGGPCFFMDPEGGPPDPMWQPMQAYLAGLIGSLAERPRAILLVSGHWEAAQVTIHAGDGHPLLYDYGGFPEHTYRLRWDAPGAPDVAMRARALIEGAGFPVGVETARGWDHGVFIPMMVAVPGADIPLAQLSLRRDLDPAAHIAIGRALAPLRDEGVLIVGSGMSFHNMRAFGPQVTPVADAWDAALSEAVTDPDPVRRAERLTAWEDLAQARFAHPRAEHLLPLMVALGAGGADPARCDYRDHVMGWTVSGYRFG
>NZ_CP010836.1|WP_044331635.1|1956404_1956623_-|hypothetical-protein
MLSEKPRFIELMAINGEPMLVNLASVRSVSAINLAGAEMGVIVFDKDHEVVVGSTVAQVIKAIAGPPIMMGD
>NZ_CP010836.1|WP_044331634.1|1955621_1956383_+|class-II-aldolase/adducin-family-protein
MATALATKPQVSAAEWEARQQLAACYRIFDMLGWSEMIYNHITVKVPDQEGAFLINPFGLHFSEINASNLVKIDIDGNTLDGSPHPVNRAGFVQHALFHRHLPDAHCIMHSHTTAGMAVSSVEGGLQPTNFYACNFAGQIAYHDFEGVTVRDEEGARLLANLGDKRVMLLRNHGILVMGQTLPEAFIKHWALQRACEIQVATASMGTPLLVPDAVVAVHQRDVHMAQVPGGPGSADFAAMVRLVDRIDTSWRE
>NZ_CP010836.1|WP_044331633.1|1954854_1955538_+|hypothetical-protein
MRAGNLSLGAKDFLAVLMPGVVLLYAAMELHSIKDLIATDDGGVTTLVFAAAAYGVGSLAYAIGATLDWLHEPTVALFVRPKHAKRVELLEGSMDNVKQQMIKAHPAYVSSAAPEFSNKSFFYDYLRLNSPSAASLLEALESRQKLFRTFYVVLVIISLDAALTGKFSLSLWTIIGAIACFGFYNHARADWRYRLCKLTLLAALPKMLPGGPASSVAAIGGSPGTLP
>NZ_CP010836.1|WP_044331632.1|1953400_1954801_+|XRE-family-transcriptional-regulator
MAAPRRRLFEGFRLRDLRRRLSLSQASMAARLGISVPYLSQIENNDRPITDIVLLALAREFPLEASEIGAQSETSALLRTIDAATDSSIPADRIDEADVRRGLEQQPLLARRLVALHEAYRRSQAQLRVLDDRFDSGSGDAAPLPWEEVRDWFQAEGNYIDAIDRSAEVLAEAVDEGIGGLESRLLRWHGIAVLAGDGGGSQLSHFDPAARTLTIAGGLPPESRAFLLAHRLVRHEFANEMRLVIDRSGLAAPASRELLSVGLANYAAGALLMPYARFRSAARDVRHDIDRLRQRFGVSFEQACHRLSTLQRPGEAGLPFFFCRVDMAGNITKRHSATRLQFAALGGACPLWVVHEAVAIPDRILVQLAEMPDGTRYVSMAKGLVKPSGSYTRSPRRYAVALGCEEAHAADFVYADALRPGGAATPIGASCRICPRLDCDQRAFPPAGSVIEIDADRRTIVPYLLR
>NZ_CP010836.1|WP_044336076.1|1951774_1953301_-|acyl-CoA-carboxylase-subunit-beta
MSSTIQELERRRAAARLGGGQKRIDAQHAKGKLTARERLEVLLDPGSFEELDMYVEHNCTDFGMQDQIVPGDGVVTGSGTINGRLVYVFSQDFTVFGGSLSERHAQKICKVMDTALKVGAPVIGLNDSGGARIQEGVASLGGYAEVFQRNVLASGVVPQLSLIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEIVTQEELGGAVTHTTKSGVADVAFDNDIEALLAARDFVDFLPGSNRESVPERPCDDPWDRVEESLDTLIPPSANQPYDMHELVRKTLDEGEFFELQPSHAGNILIGFGRIEGRTVGVVANQPMVLAGCLDINSSKKAARFVRFCDAFDIPIVTFVDVPGFLPGVGQEHSGIIKHGAKLLFAYAEATVPKITVITRKAYGGAYDVMASKHLRGDLNYAWPTAEIAVMGAKGAVEIIFRGRTPEEIAERTAEYEARFANPFVAASKGFIDEVIQPHSTRRRIALGLRKLRGKQLENPWKKHDNIPL
>NZ_CP010836.1|WP_044331631.1|1951230_1951734_-|hypothetical-protein
MPILTLALTLLGVQTAPAQAAPAWTYKESTDPAQPKNASASIRAADGNSRLVVRCDTAVQPIVSVQFIPKPPIPAGDSRTVTMTYNEAQAEMSQWQFPGAGAYNGEAVEVFILVDQVAKSKTVRVGVPEGEVMIEGSFPGPGSDAMFRKVYAACGLPYAMPSVTPGK
>NZ_CP010836.1|WP_044331630.1|1950659_1951076_-|methylmalonyl-CoA-epimerase
MKLGRLNHVGIATPSIEASIVLYRDTLGAEVIRAPFDLPAQGVKVCFVDTPNAQIELIEPLGEASPIHGFLAKNPAGGQHHLCYEVPDIHEAKAWFEAKGAKVLGEPRIGAHGTLIFFVHPKDMGGVLTEIMETPREH
>NZ_CP010836.1|WP_044331629.1|1948181_1950530_-|methylmalonyl-CoA-mutase
MSKPTLDHWSAAAAKEVKGRDLTWHTPEGIAVKPLYTAEDVAGIDPGLPGFAPFTRGVRASMYAGRPWTIRQYAGFSTAEESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDHPRVTGDVGKAGVAIDSVEDMKILFDGIPLDQMSVSMTMNGAVIPILAFFIVAGEEQGVSQDKLEGTIQNDILKEFMVRNTYIYPPEPSMRIISDIFAYTSAHMPKFNSISISGYHMQEAGATQVQELAFTIADGMEYVKYGVASGLDIDKFAGRLSFFFAIGMNFFMEIAKLRAARVLWHRVMTQLGAKDERSKMLRTHCQTSGVSLTEQDPYNNVMRTTIEAMAAMLGGTQSLHTNALDEAIALPTDFSARIARNTQIVIQEETGMTKVVDPLGGSYYVEALTQELVDKAWEIIERVEAEGGMAKAVAAGWPKAMIEQAAAAQAARVDRGEQVIVGVNKYRKDGEDPIDILDVDNVAVREAQIARIRRVKATRDEAACQAALEALRGAAVSVQASPSRLREGLGEGPMPLAASSMSVPPPTQFQVNDAPDRLGQAGGLTDLKLASGRGAQEAQAERPQGTGGSNLLALAVTAARARATLGEISAAMEVGFGRYGTQPTPVQGIYGGAYEFDRRWDRLKDGVAATERRLGRKPRMLVAKMGQDGHDRGANLVSSAFGDLGFEVVPGPLFQTPSEAAALALERQVDVVGASSLAAGHKTLIPELIAALKDAGRADIKVIAGGVIPAQDYEFLREAGVQAIFGPGTNLVKAAEEVLRLLGHNMPPMEEAAE
>NZ_CP010836.1|WP_044336078.1|1959177_1959897_+|2OG-Fe(II)-oxygenase
MIIGKVSGSASPARAKIGRDVAARLDADPAVRRAKVETAQMYTVPGFFDDAECDMLIQMIDSNSRPSTLLASSEDPEYRTSHSSDLYRWDESIWAIDQRIAALLGIPGDHGETLQGQRYAVNQQFRAHCDYFHETSDYWPKMQETGGQRTWTAMAYLNDVPEGGATWFPRAGIRFKPKRGLLVVWNNMAADGAPNYDTLHEGMRVLEGMKYIVTKWFREEPWIRDIIPTYTSPGIENAN
>NZ_CP010836.1|WP_044331638.1|1959970_1961155_+|molybdopterin-molybdotransferase-MoeA
MTPLLPVAEAQSRLLALATPLPPEATPLARALGHWAGQPVTARRTQPDADLSAMDGYAIRFADLPGPWTVIGESAAGRPFAGTASPGEAVRIFTGAMLPAGTDTVLVQEEAQREGTALALAGEGPQYLRRNVRARGLDFHEGDVLIAAGERITPARLALAGVAGHATLPVARRVRVAVAATGDELVPPGTPLSPGQLPETNRLMLMAQLADLPVDLIDLGILPDDMATLTAAFAGVDADLLVTSGGASVGDHDLVRPALAAAGAALDFWRVALRPGKPVMAGRMRNTVVLGLPGNPVSAFVTAMLFVRPLVARMAGAGNPLPVPRPILLGAPLPANGPRADYLRGAIVDGRAVAPPLQDSAMLRTLAAADCLILRAPGAPAANPGDSVEILSIA
>NZ_CP010836.1|WP_044331639.1|1961212_1961893_+|transcriptional-repressor-LexA
MLTRKQHELICFISDRLNETGVSPSFEEMKEALDLKSKSGVHRLISALEEREFIRRLPNRARALEVLRMPERGETRKPAPRKEPALLSTSSTSAPPRAANDVVEIPLHGRIAAGTPIEALEGSTMLPVPAALLGAGEHYALEVAGDSMVEAGILDGDYALIRRTEIARDGEIVVALIDDTEATLKYFRKEGAMVRLDPANRAYDAQRYRPDQVRVQGKLAGLLRRY
>NZ_CP010836.1|WP_044331640.1|1961886_1964061_-|ComEC/Rec2-family-competence-protein
MGAGAALRQASDAVECWLEAERDQLVLWLPVMLGLGIAAWFGLPDAARWSALIAAAAALALIGVATAGRGRAPRVLAVAALAVALGCALIWWRAERVAAPVLARPAMVTLDGTVVRVEALPAREMVRLTLAPVGRSDLPRKLRVNLAEGDAPAGIATGALVRLRARLMPPAPPSVPGAYDFARAAWFAGLGATGKGFAPVQVLRPGAAPGADLRARLSAHIESRIAGSAGGIASALATGDRGAITQDDSEAMQRAGLSHLLSVSGLHVTAVTAAAMLVVLRLLSLSPTLALRWRLPLVAAGGGALAAIGYTLLTGAEVPTIRSCVAALLVLLALSLGREALTLRLVAAGATIVLLLWPESLAGPSFQLSFAAVTAIVTIHEHPRVRAWFLARDEARWRGIGRGLCSLLLTGVAVEAALMPIALFHFHKSGLYGALANIVAIPLTTFVIMPLEALALALDLVGIGAPAWWLTARALDLLLGLAHVTASAPGAVAALPAMPGGAYALMVAGGLWLALWRTRVRIGGLVPLAIGAGWALLTPAPDLLVTGDGRHLAIRTANGGLALLRDRAGDYTRAMLGENGGVEDDALALLADQPEARCSADLCLIDVTRGGRRWRVAATRSGYLVPWKAMIATCAASDLVVSERRLPPGCHPRWTALDRVTLAHSGGVAISFAGPRVVTVRSGGHHPWIDPPTVQPPFEAAPGAARHDRPRRAMTRRRPDAPPQ
>NZ_CP010836.1|WP_173426220.1|1964080_1965571_+|glutamate--tRNA-ligase
MLGASAAEWAIDLIVWEQARLSATSDTGTVTDVVTRFAPSPTGFLHIGGARTALFNLLYARHHGGKFLLRIEDTDRARSTEPAIAAILDGMRWLGLDWDGEEVFQFARAERHAEVAHQLLAKGHAYKCFATAEELEAMRAEQRANKLPLRYDGRWRDRPESDAPAGAPFVIRLKAPREGAVTIDDRVQGAVTVNNAELDDMVLLRSDGTPTYMLAVVVDDYDMGVTHVIRGDDHLNNAFRQLALIRAMDWREPIYAHIPLIHGSDGAKLSKRHGALGVDAYRDDMGILPEALSNYLLRLGWGHGDDEVISRDQAIEWFDLGGVGKSPSRFDLKKLENLNGLYIRAADDARLADLVAPRLGVALSESQHDLLRRSMASLKPRAANLGELADGAGFLFRSRPLELDEGAAALLEGEARTFLAQLHTALDGVEAWDTEALEAAVRAVAEDAGVKLGAAAQPLRAALVGRRTSPGIFDVLALLGREESLARIADQMTVPA
>NZ_CP010836.1|WP_044331642.1|1965596_1966880_+|citrate-synthase
MSDTAKLQVPGKDVEYSILTGSTGPDVVDIRKLYAQTGMFTYDPGFTSTASCESGLTFIDGDEGVLLHRGYPIGQLAEESSFMEVSYLLLNGELPNQGELNKFTHTISRHTMLHEQLATFYRGFRRDAHPMAIMCGVVGALSAFYHDSTDITDPTQRMIASHRLIAKMPTIAAMAYKYSVGQPFLYPQNDLSYTGNFLRMTFGVPAEPYEVNPVVEKALDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLHEIGRPERIPEFIARAKDKNDPFRLMGFGHRVYKNYDPRATVMQKTVREVFAALNVSNPVFEVALQLEEMALKDDYFVEKKLFPNVDFYSGVILSAIGFPTTMFTALFALARTVGWVAQWNEMISDPEQKIGRPRQLYTGPTERDYVPITSR
>NZ_CP010836.1|WP_044331643.1|1967003_1967234_+|hypothetical-protein
MRQTILILAGLLAIPFGALFVLQGLGMVRWPSSSFMIDSRTWVLRGAILAVLGAVLVGGARLVPTRAERKRSRRRD
>NZ_CP010836.1|WP_044331644.1|1967332_1967629_+|hypothetical-protein
MKIAQLIAVAGLAFAGIASAATPAAAAPTHAGASTLVASVQSHGYQRGDRYDRQRYDRHRRGWDRGRHHAGNRRYSRSRKACWNEWRRGHRVTVCRRR
>NZ_CP010836.1|WP_044331645.1|1967671_1969069_-|PAS-domain-containing-protein
MNAIGPALPLAIGRLDPDGRLVEAETRLYELNDRAGGLIGGPLAVPQIATLARLSQRLGIAISRNVIAADGEDDLELWVRAEPDRGGVRLEVSGWRPRPVWRAPGTESDRDGDFFRSSADWLWETDASLRITFLSIEAGARYGFDSSAMLGQPLTRLFSLAHDDAGNLPILTAVAAQTRFDRQQAELRGTGRMVRLGATPRTDAGGRFAGFVGAAHMLDPTPPPPKIDAPVPAPAAPFGGFPNSFSQRLDRALRGPLGKIIANADSINAQTEGPLKPDYAEYAGDIANAGRHLLGLVDDLVDLQAIERDDFTTSAEPIDLADVARRAGGLLAVRAAQGEVRIDKPAMDETVPVTGEFRRALQVLVNLIGNAVRYSPQGGMVWIRLERDGDMGCVIVADQGKGIAPEDQQRIFEKFGRVDPNEPGGSGLGLYIARRLARAMGGDLTVDSALGMGARFVFTLPWRDA
>NZ_CP010836.1|WP_044331646.1|1969065_1970184_-|DUF2336-domain-containing-protein
MSDNPVDLRGGASIGAKALLARAAAAEACAYRGLMVAVDDFFLPEDQRLDERTRSALATLLRALVETVEAQIREYGARLLISRGESALAQALTEGGASVFPRLARSGLLRDTALMAELTARVRQDAIGAALPMHAPDDPERPSLINRFVQHPDRVLASGAMAVLIAESRRRGSPDAGQLAETGLPAELHHKLVWWVAAALRERVEEAEGAALAVVDRALSEAAQRSLAAYDEGDRLEATAMRFAAVIDAQADELPQLLVESLGDRRVVLFVALLAHALGSDYALARDMVLDPGADRLWLALRALELPREAIAQIGYALCEADPRRDVERFADTLDAIAEIGGHEAREAFAPLKLDPDYRAALLALAQAGSPR

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Crispr_ID: NZ_CP010836_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010836_3

2255699-2255791

Orphan

Consensus_repeat	Method
GCCTAAACTTCCTAAACTTCGCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010836_3

>merge|NZ_CP010836|3|2255699-2255791|CRISPRCasFinder
GCCTAAACTTCCTAAACTTCGCATCCCCTCGCCGGCCCGTGGCGGGGCCTGCCGAAAAACGCGCATACGCCTAAACTTCCTAAACTTCGCTCG

>NZ_CP010836|3|3|2255699-2255791|CRISPRCasFinder
GCCTAAACTTCCTAAACTTCGCATC	CCCTCGCCGGCCCGTGGCGGGGCCTGCCGAAAAACGCGCATAC
GCCTAAACTTCCTAAACTTCGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010836.1\|WP_052507829.1\|2263443_2265471_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP010836.1\|WP_044331950.1\|2261918_2262188_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_173426224.1\|2260197_2261709_-\|DUF1800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378055
NZ_CP010836.1\|WP_044331942.1\|2250795_2251533_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NZ_CP010836.1\|WP_044331938.1\|2249877_2250111_-\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|234822
NZ_CP010836.1\|WP_044331935.1\|2248610_2249384_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|376413
NZ_CP010836.1\|WP_044331936.1\|2249380_2249812_-\|twin-arginine-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|130477
NZ_CP010836.1\|WP_155006582.1\|2246623_2248138_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|284894
NZ_CP010836.1\|WP_044331933.1\|2248435_2248570_+\|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl\|CDD\|227797
NZ_CP010836.1\|WP_044331951.1\|2265562_2267044_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP010836.1\|WP_044331947.1\|2257223_2258948_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP010836.1\|WP_044331944.1\|2253495_2254518_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|224389
NZ_CP010836.1\|WP_044331948.1\|2259039_2260194_-\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|226587
NZ_CP010836.1\|WP_044331953.1\|2267154_2268414_-\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NZ_CP010836.1\|WP_044331940.1\|2250220_2250799_-\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|377219
NZ_CP010836.1\|WP_044331943.1\|2251808_2253509_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_077228547.1\|2254854_2255436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044336126.1\|2262248_2263415_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|234934
NZ_CP010836.1\|WP_044331946.1\|2256508_2257222_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|335993
NZ_CP010836.1\|WP_155006360.1\|2256178_2256439_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010836.1\|WP_173426224.1\|2260197_2261709_-\|DUF1800-domain-containing-protein	gnl\|CDD\|378055	pfam08811, DUF1800, Protein of unknown function (DUF1800). This is a family of large bacterial proteins of unknown function.	8.75485e-135
NZ_CP010836.1\|WP_044331942.1\|2250795_2251533_-\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	1.19463e-48
NZ_CP010836.1\|WP_044331938.1\|2249877_2250111_-\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|234822	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit.	5.35914e-27
NZ_CP010836.1\|WP_044331935.1\|2248610_2249384_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|376413	pfam00902, TatC, Sec-independent protein translocase protein (TatC). The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon.	1.9103e-75
NZ_CP010836.1\|WP_044331936.1\|2249380_2249812_-\|twin-arginine-translocase-subunit-TatB	gnl\|CDD\|130477	TIGR01410, Sec-independent_protein_translocase_protein_tatB., twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.60167e-16
NZ_CP010836.1\|WP_155006582.1\|2246623_2248138_+\|HAMP-domain-containing-protein	gnl\|CDD\|284894	pfam07568, HisKA_2, Histidine kinase. This is the dimerization and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with pfam00512 and pfam07536. It is usually found adjacent to a C-terminal ATPase domain (pfam02518). This domain is found in a wide range of Bacteria and also several Archaea.	6.02159e-20
NZ_CP010836.1\|WP_044331946.1\|2256508_2257222_-\|SPOR-domain-containing-protein	gnl\|CDD\|335993	pfam05036, SPOR, Sporulation related domain. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.	7.25743e-05
NZ_CP010836.1\|WP_044331953.1\|2267154_2268414_-\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	6.23805e-112
NZ_CP010836.1\|WP_044331947.1\|2257223_2258948_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP010836.1\|WP_044331944.1\|2253495_2254518_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	2.04247e-70
NZ_CP010836.1\|WP_044331948.1\|2259039_2260194_-\|DUF1501-domain-containing-protein	gnl\|CDD\|226587	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown].	6.39035e-83
NZ_CP010836.1\|WP_044331933.1\|2248435_2248570_+\|entericidin-A/B-family-lipoprotein	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	9.76671e-05
NZ_CP010836.1\|WP_044331940.1\|2250220_2250799_-\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|377219	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB. This is a family of prokaryotic proteins that form one of the subunits, ScpB, of the segregation and condensation complex, condensin, that plays a key role in the maintenance of the chromosome. In prokaryotes the complex consists of three proteins, SMC, ScpA (kleisin) and ScpB. ScpB dimerizes and binds to ScpA. As originally predicted, ScpB is structurally a winged-helix at both its N- and C-terminal halves. IN Bacillus subtilis,one Smc dimer is bridged by a single ScpAB to generate asymmetric tripartite rings analogous to eukaryotic SMC complex ring-shaped assemblies.	1.45566e-52
NZ_CP010836.1\|WP_044331951.1\|2265562_2267044_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP010836.1\|WP_044336126.1\|2262248_2263415_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|234934	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	1.20236e-157
NZ_CP010836.1\|WP_052507829.1\|2263443_2265471_-\|SPOR-domain-containing-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	6.16633e-15

>NZ_CP010836.1|WP_077228547.1|2254854_2255436_-|hypothetical-protein
MFEAKPSSRADLKSGTLYAVSGEAQWIYYGQVTPDKRVGFFHRRDRNVASPADILSAPLMAVIGVAYPSITRALRSGAWAKLGRFELVSALKEPWPMVQWPVGTLVVGVSDGDAEYDTRVEDPAIQDMEIMASWDAEQHIPGRLTADFGKEEAPWHIGGPVRRQRRVKEEYARRFPDAPWHQLPPDWVKTNVS
>NZ_CP010836.1|WP_044331944.1|2253495_2254518_-|beta-N-acetylhexosaminidase
MKPVIFGISGRTLTADERAFFKDADPLGYILFKRNCGDRAQMRALTDSLRELTGRADLPILIDQEGGRVARMQPPEWPAFPAGAVFDALYDVAPISAIEACRASAQALGMMLAEVGVTVNCAPLLDVRQPEVTPAIGDRAFGGEPMRVAALGQAMLEGMRRAGVVGVVKHMPGHGRALVDSHLELPRVTADDAALASDIEPFATLRDAPMAMTCHVVFDAWDAERPATLSPTVIRDVIRGRIGFDGLLMTDDIDMKALSGTAGEKAAGALAAGCDVVLDCWARMDEMVEIAGLIGEATPECRARLDRAMATIAGGPEPAEFAALVAQRDALLALVPATAS
>NZ_CP010836.1|WP_044331943.1|2251808_2253509_+|hypothetical-protein
MAALALSTALCLPNTIASAQAPAPLVYLEQGSAWQTAQRASFYTQDQGSQMIPFAWMKALTGPDGKPFLSDQLQRYGYLANPYNNGTGLPIGFTLAGISGSEVVGMNCAACHTRDIAVAGTRYRVDGGPALSDFQNFLTDMVDAVGRVAKGTGDPAFLAFATAVLGPNPDPVAVAELNLSVAQWYSRENAIRTGAYPNPDMWGLGRLDAVSMIFDRLTGVDIGPSSNNYIIQSNIMLADAPVRYPFLWNASRQDRTQWPGFAANGNSLLGLARNLGEVYGVFGTFHPVSKGRGYYDFLADNSADFGGLGKLETLITQIGAPAWPWQIDPALAQQGAAVWKKPSLGNQSCATCHDQKPGAFRGLTPTWATPIQNVGTDTREWDILGRVVNSGSLTGGKLFFFSKPLPANATAFELLGFSVVGSIVQQANPFKSKAAPSAKNNATLQASLSDLTGAFPDLKAAAPTTGSYESRVLYGIWAAAPYLHNGSVPTLADLLKPASQRPERFKMGRNYDLTKIGIAAEQDGNYVTATTGCDKPNSGKSRCGHEFGTEFSDTEKTALLEFLKML
>NZ_CP010836.1|WP_044331942.1|2250795_2251533_-|segregation/condensation-protein-A
MSDAAPDETLKIDIEGWEGPLDLLLTLARNQKVDLRQISILQLVEQYLDFVAQARELKLELAADYLVMAAWLAYLKSALLLPRDPEETPSPEELALRLQLRLERLNAMREAGARLVARDRLGRDVFLRAAPEGLRVVRKGRYEAEIYDLIAAYGRISARTRPVMHVVAVRDVMTLEEAIERVSALIGARVEWSAIESFLPDGATGMYRKSALASSFVAALELARQGRVELQQKSPFAPLYLRAGA
>NZ_CP010836.1|WP_044331940.1|2250220_2250799_-|SMC-Scp-complex-subunit-ScpB
MNAAESLERAVEAVLFAAEQALSVDDLRAHVGQEADVRGALAALEARYAGRGIELVRRGDRWHFQTAADLAHLLRRDREDSRKLSRAGIETLAIIAYHEPVTRAEIEAIRGVQISKGTIDVLMEAGWVRPAGRREVPGRPLTYATTAGFLTHFGLASRRDLPGIDDLRAAGLLDPVDLTLDLAESETVIEGE
>NZ_CP010836.1|WP_044331938.1|2249877_2250111_-|twin-arginine-translocase-TatA/TatE-family-subunit
MGSMSLMHWLIVGILVILLFGGSRFSNMMGDVAKGIKQFKKGMAEDDEAPKPAARIEGKPAPEPGFQTEAERTREER
>NZ_CP010836.1|WP_044331936.1|2249380_2249812_-|twin-arginine-translocase-subunit-TatB
MFDVAPQELLLVAVVALLVIGPKDLPRAMRFVGKWVGKARGVARQFRSGIDTMIRESELADMEKQWAAENERIMREHPVATLPAPDAADAHTPIDDPAPVMVEQPAILPAPEAPAASEPATDEKPKRARKPKVAAAAAEDTQP
>NZ_CP010836.1|WP_044331935.1|2248610_2249384_-|twin-arginine-translocase-subunit-TatC
MSDEIDDTQAPLLDHLIELRRRLLWSVAALAGAFAVCMYFARAILSMLVAPLKAAGQVTIINTAVTGGFIVEIKVAFFAALMIAFPVIANQLWQFVSPGLYRKEKQALLPFLLATPVLFTAGACMAYFVAIPVALKFLLGFQGELAGGVQQTAMPEVNEYLKFVMQFIFGFGISFLLPVLLMLLEHAGIVTYEQLKGAWRYATVGAFALSAVLTPPDIGSQLLLAIPLVGLYFLALVAIRFTRKRRDRAAESEAEAA
>NZ_CP010836.1|WP_044331933.1|2248435_2248570_+|entericidin-A/B-family-lipoprotein
MRKIIACAALAGAILVSACNTVEGVGRDVSSAGSTVANAADESK
>NZ_CP010836.1|WP_155006582.1|2246623_2248138_+|HAMP-domain-containing-protein
MPTGAKVFLILVGALLPLALIALFTTLQTTRSADSEARQRVRALAEESSGIVQNVLANHVGQLRETMTALEQDPDDAPSCTRLAGTFATQGGVRFVINDASGRPLCGERVALTGAAILRPGQVTTSIVKGGMMLRIGGAAGASAVAYYPIEVLRELARPSGFVPEYGAALLDGEDRLTLRTLPRGGLLDRPEAVPSDLGIDDLQLEISMPGAPVTSPLVITTVLLVVMLIAAAAIGWFVVDILLIRPLRRLRASVGRYQPGEVIDVKRFGPMPAQEIRDLGATFRQISQTVQAHEADLAEGLVRQTKLTREVHHRVKNNLQVISSLINFHARGAKSAEASEAYASIQRRVDALAVVHRNHYAELEENRGLELRSVLGELAANIRATAPEQASGLGITLDIEPVLVTQDVAIAIAFLITEIVELAINCNPSANIRITVKGSESEPDRATLRVISPALVEDAGMEALLESRYARVMSGLARQLRTKLHHDPLVGAYEASIAITGRS
>NZ_CP010836.1|WP_155006360.1|2256178_2256439_-|hypothetical-protein
MAELLLLGSLAGLLIGVVVRSDKAGCIVLLFVPVLAVLSTAVEQRMYPDRLTAFSGLDFLSDPFWFSLGALCGLIVGRIARAQLRG
>NZ_CP010836.1|WP_044331946.1|2256508_2257222_-|SPOR-domain-containing-protein
MSARGEAGYGDDDRLPWLETVEDEYRDGPSIGRILLLIVLILLVVGAAGFGYYWYQKQQGLTGNGELINAEAGDYKVKPDQPGGMKVEGEGDTVFATSQGAAANASINAGALPEAPVEGTVVQQRAPVAGGKTATIAVPTGGATPAQRPVVAAPPPTAASGSLIQLGAYPDERGANAAWARLSKRFAYLAPLGKSVERGEKDGKPIFRLRVNAGSNGQAKELCGKLKVAGESCYVTS
>NZ_CP010836.1|WP_044331947.1|2257223_2258948_-|arginine--tRNA-ligase
MTLYHRFAAHLNAALDALVAAGDLPGGLERRAVTVEPPRDVTHGDLATNAAMVLAKPAGTNPRALAEKIAAELEKLPEVSAVSVAGPGFINLSLTDDTWRDELTTIVAEGADYGRSTLGAGVSVNVEYVSANPTGPMHMGHCRGAVVGDALATLLEFVGHRVIREYYVNDAGGQVDVLARSAHLRYREALGATIEIPEGLYPGEYLKPVGEALAAEYGDRYVEAPEGEWLVLFRKSAVAAMMVMIRADLKLLGIVHEVFSSEAELQAAGKPEAAEAWLRERGLVYDGVLEAPKGETPEDWEPVELPLFRSSQFGDDQDRPIKKSNGQWTYFGADLAYHFQKAQQADQLIDIWGADHAGTVKRIVAAVAALTGGQTKFDVKLVQMVRLLRAGEPVKMSKRSGNFVTLADVVGEVGKDVVRFTMLTRKADAQMDFDFAKVVEASKDNPVFYVQYAHARIASVHRKAAEAGIDCPDAALSLLDTEELALVKLAAQFPRVVEGAALAREPHRIAFYLYDLAAGFHALWNAGNDRPDRRFVIADQTGLTCARLYLARGIGQIVRNGLGLMGVEAVEEMH
>NZ_CP010836.1|WP_044331948.1|2259039_2260194_-|DUF1501-domain-containing-protein
MFNRRKFIALGASAIATSAFGPKMVLARAATERRFVFIIQRGAADGLMTVAPVGDPAFVTQRDALAQDFVAAPKLDSMFALHPVLANIDGLYRARQALFVHAVASPYRDRSHFDGQNVLETGGTSAYSLKDGWLNRLLSLLPKDDDSAIALAASIPMALRGPVEVASYAPSALPDASDDLIARVSSMYQNDAQLHAAWEQATATRMLTSELAADNGRNAAATGALAAKLMAAPGGARIAMIETGGWDTHAQQRGRLTGQLRGLDAMVAALRDGLGPLWSDTLVLVATEFGRTVKINGTQGTDHGTGSVAMLLGGAVNGGRVEADWPGLADAQLYEGRDLRPTLGLDNLIHGALASHFNLSPVQTAATLFPDMKGGRLMRDLVRV
>NZ_CP010836.1|WP_173426224.1|2260197_2261709_-|DUF1800-domain-containing-protein
MTDASIALNRFGLGATPGDRPGADPKKWLIAQFDRFEPRPAAIAALPGSAQLCDELGQHSARDSQIRRQVNATKRAQRRAAARAAAAPSPAPDMAMGEAMTAPQTAPQTNVNPISEELRRAREEARAHYTEQTTARAQAAVTTSAPFVERLVHFWSNHFAVSADKLETIGLTGTLEFEAVRPHVLGRFGDMLNAVERHPSMLFFLDQAQSVGPNSPVVRASGRSGRKRGLNENLAREILELHTLGVRTGYSQADVTEFARAMTGWTIAGVDRRPPFLALGLTGEPGSFAFAAKMHEPGTRMILGKTWPQQGEAQAAAVLDMLAVHPATARHIATKLARHFAGDDPPPALVARLEAAFLKSDGDLPTVYRALVASPECWVPQPVKFKTPWEWTISVERALGAQQQRKGTVGLISQLGQPVWRPGSPAGWDDVAGSWAGPDAIMRRVEAAERIAQRTRDTLDPRARAAELFPGSLSDATAQAISRAESPSQGLALLLVAPEMMRR
>NZ_CP010836.1|WP_044331950.1|2261918_2262188_+|hypothetical-protein
MARILFAAAAATLAFATPALAGDRTFTHEGVTYVYTVTPKGDARVLEGKASTGGKFRLVVRNGWVDGYASNNRVSFRAPKSENAVVAQR
>NZ_CP010836.1|WP_044336126.1|2262248_2263415_-|deoxyguanosinetriphosphate-triphosphohydrolase
MSGHAPWACMPGQSRGRLYPEPGGEVRGPRDAFQRDRDRVIHSISFRRLRHKTQVFLAPDGDHFRVRLTHSLEVAQIGRTIARALGLNEDLTEALCLAHDIGHPPFGHAGEDALEHALAGVGGFDHNGHTLRTLTMLEHPYPAWRGLNLTWDTLEGLAKHNGPIARPEWALAAADAEFPLELETWPSLEAQVAAIADDIAYDNHDIDDGLRAGLLTLDQMMALPMVADGWRRVEKQFPGVPAKRLVGELIRSQIGAMANDLIAATRARLDGSGIESVADVRAAGRCLAAFSDAMRDDERALKRFMYANLYHHPSQLAAAEAAHGVVAGLFAAYAADATLMPAEWRDALPAEEPWRSRHIADFIAGMTDRYAVTRYREAVGPIALPEGF
>NZ_CP010836.1|WP_052507829.1|2263443_2265471_-|SPOR-domain-containing-protein
MNRIRTSRALALGLMLAATGVCPVRAQTEIVAAPNPDADRLAEQVRALAADPRDVNALLTAGVLSARLGDTSAALAFFQRAETVDPSNPRILAGRGSALVRLERPGEALRLFQGAEARGVPVRDYAADRGFAYDLLGSPDLAQRDYALAMASGDRSEETQRRYALSLGSTGRVDAAMAQLDPLLRKSDRAAWRARAFIMAMNGDVAGAERIAASMMPGTMGQALAPFFRRLGTLSPADRAFAVHFGELSPTQARMADARLAPALPRYVPEARPVQVAAAPVQPASSAKGRDRRSRRERERDERAAQVAATAAARRPVEVAAAAPLPAPPQFVPPPPQPMVQPLPTPAPTPAPSTTRAPVRLAGSAMQAPERRTTLRQGGAGEQPAWPLRFETAPAQPPETRAAAPASSVPQPAAPSATAAAPEPRPATPEPRAVEAAPPVAQPQPERQAQVQPLPEPQPQPVLAPPQQRAAAPTPPGPARVGQEDSVLAAIMGKLTIPGEELEVVTRVPIEPVRVEPAPEPAPAPEPKPEPKPALVKPAPPKPEPKPKPEVAKADPAKVDSKAKAGKPDPKAKKPDPKKDPVKLEPARAWVQVAGGANVDTLPKAWKAVVAKAPVLFKGKSAWWTPLRATNRVLAGPFKTAGEAQAFVNSIAKSGLSGFVFTSEAGQKITRLEVK
>NZ_CP010836.1|WP_044331951.1|2265562_2267044_-|cell-division-protein-FtsZ
MSIEFLPAEVDELTPKITVIGVGGAGGNAIANMIRAEVQGVEFLVANTDSQALKQSSAGHRIQLGAKITQGLGAGSRPEIGRAAAEETIEQVQKALEGAHMVFIAAGMGGGTGTGAAPVIAKAARDMGILTVGVVTKPFSFEGRRRAQSAEAGIEELQKYVDTLIVIPNQNLFLIANANTTFKEAFEMADEVLQQGVRGITDLMVMPGLINLDFADVRSVMQEMGKAMMGTGEAEGDDRALIAAQKAIANPLLDGVSMNGAKGVIVSITGGEDMRLLEVDEAANHIRELVDPDANIIWGSAFNPDLEGRIRVSVVATGIDADAQAKPAPVAAEQPRVFSFATPRRTAAADSAPPAAPASGYAEPAPAPAPEPIAEAPRIPEPYVPEPQPEPVARFDDVPEADELLLGEEAAMVPPAPAAPEPAAPPAPEYGSRRRWLTGGEDEPAAPEAKPARRSGGTLFERMASASRGAAKSDDDDKDPLDIPRFLRSQNNQ
>NZ_CP010836.1|WP_044331953.1|2267154_2268414_-|cell-division-protein-FtsA
MAKTAPEGLITALDVGSSKVSALIAQKSDDGQLVVLGTGQRESRGVKRGYVADMHATEIAIREAVEQAERIAGTNIEDVWVSFSAGGLVSDIVKLEADLGGHRVEQGDIDELLRAGRDAIDPQGKMVLHAQPTRYTVDGLAGVKRPLGLHADRLGVDIHVVATEGSPVRNLDLCVRSAHLEVRSIIAAPVATGLACLTEEERELGVALVEIGAGVTNVSVFAGGVLAGLASIAMGSSDITDDIASAFGTARQWAERTKCFHGSANLSPRDNHEMIDVMPAIPDDNVEGPRITKAQLNGIIRQRLERLMSEIQKELKKLGFADPVGRQIVLTGGGAELKGVADYAQQSLGSAVRVGRPKGLIALPEAHSGPAFATLAGLARFAAADPIDLRALEPSHQLVTKTSTGALMQRLMAAFRANY

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Crispr_ID: NZ_CP010836_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010836_4

2514367-2514459

Orphan

Consensus_repeat	Method
GCCTAAACTTCCTAAACTTCGCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010836_4

>merge|NZ_CP010836|4|2514367-2514459|CRISPRCasFinder
GCCTAAACTTCCTAAACTTCGCATCCCCGCGCCGGCCCGTGGCGAGGCCTGCCGAAAAACGCGCATACGCCTAAACTTCCTAAACTTCGCTCG

>NZ_CP010836|4|4|2514367-2514459|CRISPRCasFinder
GCCTAAACTTCCTAAACTTCGCATC	CCCGCGCCGGCCCGTGGCGAGGCCTGCCGAAAAACGCGCATAC
GCCTAAACTTCCTAAACTTCGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010836.1\|WP_044332163.1\|2510063_2510480_-\|flagellar-trans-acting-factor-FliX	unknown	unknown	gnl\|CDD\|371233
NZ_CP010836.1\|WP_044332171.1\|2512374_2513286_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235737
NZ_CP010836.1\|WP_044332180.1\|2521326_2521677_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|236350
NZ_CP010836.1\|WP_044332178.1\|2518908_2519556_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235679
NZ_CP010836.1\|WP_044332167.1\|2511665_2511956_+\|rod-binding-protein	unknown	unknown	gnl\|CDD\|274188
NZ_CP010836.1\|WP_044332174.1\|2515000_2517772_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271320
NZ_CP010836.1\|WP_052507854.1\|2513474_2514044_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP010836.1\|WP_044332181.1\|2523008_2525090_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP010836.1\|WP_044332176.1\|2517860_2518895_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NZ_CP010836.1\|WP_044332184.1\|2526789_2527455_+\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|224756
NZ_CP010836.1\|WP_044332158.1\|2507927_2508191_+\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|235671
NZ_CP010836.1\|WP_044332161.1\|2508946_2510014_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP010836.1\|WP_044332173.1\|2514588_2514999_-\|flagellar-biosynthesis-protein-FlgB	unknown	unknown	gnl\|CDD\|235667
NZ_CP010836.1\|WP_044332179.1\|2519716_2521315_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_CP010836.1\|WP_044332182.1\|2525199_2526780_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|237057
NZ_CP010836.1\|WP_044332169.1\|2511955_2512378_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044332160.1\|2508187_2508946_+\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP010836.1\|WP_044332164.1\|2510562_2511666_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP010836.1\|WP_044332157.1\|2507614_2507926_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|179101
NZ_CP010836.1\|WP_077228829.1\|2521691_2523008_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114

Protein	Function_ID	Function_description	E-value
NZ_CP010836.1\|WP_044332163.1\|2510063_2510480_-\|flagellar-trans-acting-factor-FliX	gnl\|CDD\|371233	pfam10768, FliX, Class II flagellar assembly regulator. The FliX protein is possibly a transient component of the flagellum that is required for the assembly process. FliX may contribute to the targeting or assembly of the P- and L-ring protein monomers at the cell pole. The family carries a potential N-terminal signal sequence and at least one transmembrane domain indicating that it might function either in or in association with the cell membrane.	3.92756e-13
NZ_CP010836.1\|WP_044332171.1\|2512374_2513286_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	3.87172e-92
NZ_CP010836.1\|WP_044332180.1\|2521326_2521677_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|236350	PRK08916, PRK08916, flagellar motor switch protein FliN.	2.9461e-35
NZ_CP010836.1\|WP_044332178.1\|2518908_2519556_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235679	PRK06032, fliH, flagellar assembly protein H; Validated.	3.7371e-11
NZ_CP010836.1\|WP_044332167.1\|2511665_2511956_+\|rod-binding-protein	gnl\|CDD\|274188	TIGR02541, Peptidoglycan_hydrolase_FlgJ, flagellar rod assembly protein/muramidase FlgJ. The N-terminal region of this protein acts directly in flagellar rod assembly. The C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring.	2.46125e-09
NZ_CP010836.1\|WP_044332174.1\|2515000_2517772_-\|hypothetical-protein	gnl\|CDD\|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	9.57929e-05
NZ_CP010836.1\|WP_052507854.1\|2513474_2514044_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.91906e-08
NZ_CP010836.1\|WP_044332181.1\|2523008_2525090_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP010836.1\|WP_044332176.1\|2517860_2518895_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	2.49776e-120
NZ_CP010836.1\|WP_044332184.1\|2526789_2527455_+\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|224756	COG1843, FlgD, Flagellar hook capping protein [Cell motility and secretion].	5.50447e-37
NZ_CP010836.1\|WP_044332158.1\|2507927_2508191_+\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|235671	PRK06010, fliQ, flagellar biosynthesis protein FliQ; Reviewed.	3.26588e-20
NZ_CP010836.1\|WP_044332161.1\|2508946_2510014_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	2.54736e-150
NZ_CP010836.1\|WP_044332173.1\|2514588_2514999_-\|flagellar-biosynthesis-protein-FlgB	gnl\|CDD\|235667	PRK06004, flgB, flagellar basal body rod protein FlgB; Reviewed.	1.30574e-29
NZ_CP010836.1\|WP_044332179.1\|2519716_2521315_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	1.0279e-134
NZ_CP010836.1\|WP_044332182.1\|2525199_2526780_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	5.61933e-12
NZ_CP010836.1\|WP_044332160.1\|2508187_2508946_+\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	5.85554e-48
NZ_CP010836.1\|WP_044332164.1\|2510562_2511666_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	2.45298e-172
NZ_CP010836.1\|WP_044332157.1\|2507614_2507926_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|179101	PRK00732, fliE, flagellar hook-basal body complex protein FliE.	2.47361e-19
NZ_CP010836.1\|WP_077228829.1\|2521691_2523008_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	8.51491e-114

>NZ_CP010836.1|WP_052507854.1|2513474_2514044_+|TetR/AcrR-family-transcriptional-regulator
MIDAAAAIISDEGVEGFTLRAAARRAGVSPGAPAHHFGNIKGLLTEVATLAYKELYHCFSTVERGATPGATLRSMARAYIDFALNNPGRFQLMYRKDLVNRLDARYAQASKATLEMFALAAADVYGVSDLAVEGQSTGYAGIIAAWSTAHGIAHLALEEKLDFVTQGEHRMRDFMDRALPSILESQWPG
>NZ_CP010836.1|WP_044332171.1|2512374_2513286_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSGFSESDVTDQSGKTFVVTGANSGLGFEITRVLAARRARVVMACRSKPKADAAIMRIRALNPGAELEFLAYDQSDLDSIRTAAETLSAGPVIDVLINNAGVMEFTLSQTKQGFEQHFGTNHLGSFAFTCLLLPKLAEASVPRVVITGSASHRTGVIDFDDLDNAGKGYGHSSRYANSKLANMLFLFELDQRLRAAGSPIIAIGSHPGLAITSLGREQRLLRSIVVPLAKLLRFNTAAMGAWPSLQAATSVVNPGGYYGPIGWNELKGPSGPSGRSPNAVDATIAQRLWDRSIKLTGVDVTPL
>NZ_CP010836.1|WP_044332169.1|2511955_2512378_+|hypothetical-protein
MTAHLIDAMLSLTSLMEEESEKLSRTPYLPELPEIANAKLRLTGRIEAEVARLKRGSEDWLTQLDADTRLQLADASRNLRDACTVNAQILSRQIELSVEMMAAIAAEAQRLTGSRSSTYGAGGGLGGLEAPAPISINARL
>NZ_CP010836.1|WP_044332167.1|2511665_2511956_+|rod-binding-protein
MPDIAPVTPAAPPPAMPRVDARNAATARNFEAVFLGQMTQLMLESVDREGGFGGGHGEDMFRGVLAEKLGTEMAKRGGIGLAPAVLDQILKLQQGR
>NZ_CP010836.1|WP_044332164.1|2510562_2511666_+|flagellar-basal-body-P-ring-protein-FlgI
MKRIAALILVLIATLAFAPYAAAQTRIKDVVDVENVRENQLVGYGLVVGLAGTGDRMRNAPFTEESMQAMLERMGVNIRGTQMRTQNVAAVSITATMPPFARSGSRIDVQVAALGDASSLQGGTLIASSLRALDGEIYAVAQGNVAVSGFKGQGAAASVSRGVTTSARIANGAIVEREVPYALTSAVSLKLALKNPDFATAARIAAAINGKYPGTAEVLDPGTVELSPGTRFAGGVIDLVTRIGDLEVRVDQPARIVINEASGTVVMNNDVRVTPVAIAQGGLTITVSEAPQVSQPAPMSNGETTVVPRTQVQVNDGNDASLATITGESLQSLVSGLNTLGVSPRDLITILQAVKSAGALQAEIEVQ
>NZ_CP010836.1|WP_044332163.1|2510063_2510480_-|flagellar-trans-acting-factor-FliX
MRIEGLSTILLRGAFAALPKVVPSFPMNEDGPRAMPQPPVSGPGAPPMPSVQMLVALAAGDPGIERRRKQAVDAERGLDALDRLHREVLAGTPSVARLQEIAEWSQGFTNPDDPVLKDILSEIDLRVRVELAKFDVEA
>NZ_CP010836.1|WP_044332161.1|2508946_2510014_+|flagellar-biosynthesis-protein-FlhB
MAEGSEEDKTLDPTDKKLDDARQKGDVPMAPEMRHATMFVAMLVVMGGLGVITVQGLGMILVRLWGGADEFRMSPDGAQAFATGILGAFATAMVPVLSAMFGFALLGGILQGRPMIAWTRIKPKFSKLNPVSGAARLFGKQSLVEFLKTLAKLCIVVGITYSVAWPHAAGIERLVGADLQATGAAANGIVWAMLQPIATLVGALALFDFVWQRRAYLKKMRMSLQEVKDEHKESEGDPKIKGKIRQMQMQRARSRMMANVPKASVVITNPTHYAIALQYDHGAMAAPVVVAKGVDAVALKIREIAAANNIPLVENRPLARALYASAELDRPIPVEHYAAVAEVISFVMRIARNRR
>NZ_CP010836.1|WP_044332160.1|2508187_2508946_+|flagellar-biosynthetic-protein-FliR
MIVPADLELQVTAFFIVFARVGAVLMLLPVFGEDAVPGRIRLMIAFAMSAALYGILGAPARAAVAGGAVLPAVIVAELMTGLAMGMIVKILFFSISMAGSIVSMQIGLSAAMIFDPAQSSQAPLLSKFAGIAAALVCMGMQVHHLWLGAIINSYQSFPIGGLPPMQDFAQLAIEAIGRSMTLGISLAAPLIVYGIAFNVALGLAARISPAIQVFFIAQPLNLLLGLSLAAATIGTMLTFFGQAMGDAMQGGW
>NZ_CP010836.1|WP_044332158.1|2507927_2508191_+|flagellar-biosynthetic-protein-FliQ
MTPDQVVELAEAALLLVLTVVGPLLLTSLIVGSIIGLLQALTQIQETTLTFVPKLFAMGIVFLLTLPAMGQALSGFMAKISDLIITG
>NZ_CP010836.1|WP_044332157.1|2507614_2507926_+|flagellar-hook-basal-body-complex-protein-FliE
MSIGALDATSAYGRVAGLGNSIGKSVGKTEESGGFGAMVEGLVTGTADQMRVAEKASTAQVAGKGDLIDVVTAIGAAETALDTMVAVRDRVVSAYSDIMRMQI
>NZ_CP010836.1|WP_044332173.1|2514588_2514999_-|flagellar-biosynthesis-protein-FlgB
MSTLPLLAGIRERMMNLSERQRVIAQNIANSETPGYKTRDVAEPNFAAMVGGSGMVARPKVELTAAMKRLGAVQPVGAGIVLDKDITETKPDGNNVTLEDQLLKLGQVQADFTAMTSLYRKQQLMLKTALGRGGGG
>NZ_CP010836.1|WP_044332174.1|2515000_2517772_-|hypothetical-protein
MAVNLSNSLAGLSLLTGTGVSSSSLETIAYESKAVRTAKAQFTLAATTPPWKETKTSAPLSSQVSTIKAMKTVIDKAGTGSELLPEDVQTSFIAYKALDRLRLLAEAASVKTASSAQRATLQTSFAKGLADVQAFLAKAPSDKVNLAFAQPSRSAKTIDLSAPDQYAVKGPGLVKNRTDAIPGLTGSEVFTIKLDKPGATDTVTVDLAQGTQPPTLDSVAAAINAAITAIPRRNADGSVYLDENGESAPRWLAQFEVQKGTDKWGLTLKAPSGLERVTLDQVGAKDALVVATGQTALDAPTATSVFRIDDPSGAATRKTMATLSALDRQETARATLLGKTTTLTTTKTDLDGKIKTQTTKTNNVYAPTDAAAVATDAQGNSYVVGTTQGDLGANRSDGDDNLFLTKMDGEGKIVWQRSLGAGGSSTGAAVSIAPDGGIVVAATVNGSFNGATADGDMAVAKFDAEGDEQFSTVVRAVGADTARALAVGADGSIFVGGRVSTGGGDAFVARIDSTGAIAERSTLSGTGSETLNGLAIDGDGNVLALMASDGVAEVRKLDAAALSTELGRISLGSADARVIAVGADGSIAVGGATDAALTGTQVNATGGGRDGFVARIDSALSSASVTYLGSSADDQVDSLAFMGGTLYAGGRTTGTLGAAKLGATDGFVARIDPATGGIADTNQFGASLLRTEPVRIAANVGGANALSALGFARGTVNPEVSEKLTTQTALRPGDSFSIRVNEGTVRKITISADDTLTTLADRIRGIAGASKATVTTPKIGEGRSLRIDMKAGNAIELLAGPDGTDALAKLGLDPQRIQADPTVASGAPRVRPGGTFGLGLSEALNLTTLDDAKVALKKMGEAVSMSQTAYRSLYWDDGKARLVDGVKNTKTGKGSTVRETAQLANYTAALKRLNSTSSSITGL
>NZ_CP010836.1|WP_044332176.1|2517860_2518895_+|flagellar-motor-switch-protein-FliG
MSLMAPIAEPAELKKYSGAQRAAALMLALGREHGAPIWEQLSTDEIKELSSTIAGLGRISSAVVEHLLIQFTGEVASMASLHGSYETTERLLGGILPGDKVKEIMEDIRGPSGRTMWDKLSNVSESVLAGALRHEYPQTVAVILSKLRADHAARVIAELPRDFSVDVVMRMLRMDTVQKDVINQVEQTLKSEFMTNLSRSNKRDPHEAMAELFNSLDRATEEAMLTALDGRAPESAERIRALMFTFEDLSNLLPAAIAVIVRNADKREMALALKGAPEQLKQLFFGAMTERASKLMREDMAGMGPVRARDCEEAQSSLVRLAKSLADRGEIMLVDPKSDDAMII
>NZ_CP010836.1|WP_044332178.1|2518908_2519556_+|flagellar-assembly-protein-FliH
MSLHSVERFAFDRIFTVASGDSAPTGDSLLELAALRVEMAALKAEQGAQVALARAQGFDAGLAQARAEREVALLSAVDALQAGIETLDERFADVTRRVTSDAAEIALAAADMIAGRALETAPGDAIDAAIGRVLAQVARGTELEIRVHPDIIDAVEARIAERQSRDRRKLSLTVIGDVTLAPGDAMIGWEQGGLALDAAARRRAVEAELHSLLHP
>NZ_CP010836.1|WP_044332179.1|2519716_2521315_+|flagellar-M-ring-protein-FliF
MEAITNFAGQLGPKRLLLMGGVALALLAALAFVASSGSNAQMGFLYTDLDASSAATITDKLKAQNIDYTLSADGTSIMAPQDKLAELRMSLAGEKLGGKIGYDVLDAEQPFGVSSSRAKMNETRAIEGELAKSVETIQDVTAARVHIVMPERTMFASETRKATAAVTVKTKGRISSETIAAIRYLVASSVPELSPDAVSVVDQTGALLARAGDPGTAGAGDADERQAAVEAKLRSEIESLLEPIVGQGKVRAEVSAQIDRDQTREESTMFDPDKQVISRQVSVESGDQNSETDAAPGTTSIGNQLPEAQGQGGGGAGPSKQTTSNQTSEDTTYDNSATKTVTLRAPGKVTRLSVAVMVDGGEKGLPQPQIQRLQRLVENAVGADAERGDSVVVESMAFSGGDALADKDAGLLSLLPMDRIWSLLQLIVIGVVGLVALRMLKPKTVPGMADGAPALAGPTPEMLALAERAAGGDAEAQQQLEALNVDPPLLDQEIALAQVDGRIKLSALKRIGDAINASPPEAASVIRQWMNT
>NZ_CP010836.1|WP_044332180.1|2521326_2521677_+|flagellar-motor-switch-protein-FliN
MSIDPHDIIPAEPGEQQGPVFEDFEPLPMGDTSTTGSEGLEAVHDVPVKVQAILGRARMPVGELLHLREGHVVELDRRVGEPVDIFVNDRLIARGEVVLIDNALGVTLTEIVRADR
>NZ_CP010836.1|WP_077228829.1|2521691_2523008_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MLLVGAPGTEFRRAAELAREAGADVAMADGPGDALGMLRASGGDLVMIDVETDVPLFMASLRAERFTIPVLACGIGASAERAVAAIRAGARDYVPLPPQRDLIAAAIASVVQRKPPELIGDNPALARALALASAVAPSGAPVLVTGERGSGKETMARTIHEASGRGTAMLVVECAGVAADVIESELFGHEEGAFVGAVARRIGRFEKAGTGTILLREVSALAPATQARLLSTLQEQRFTRVGGREPVPFHARLIATTTLDLEAAVSAGAFRADLLVRLGLVRVDVPPLRARGDDAARLARHFAQRLAEADGTRERAFSDDALALVTRYGWPGNIRELEDCIHRAVLLARGTRIEASDLVRSDGSRLIDLETSEPHRFQVQGLVGHTVEEVERELILQTLERCHGNRTSASSILGISVRTMRNKLRTFIEAGIPVSPAP
>NZ_CP010836.1|WP_044332181.1|2523008_2525090_+|flagellar-biosynthesis-protein-FlhA
MPNALTNLLQRLGVNRDMALAFGVLAIIGMLILPMPGWMLDMGLALSITISVMILMTALFIDKPLELSAFPTILLISTMLRLGLNLASTRLILSHGHEGPDAAGGVIGAFGEFLMGGETIIGLTIFIILIVINFVVITKGAGRIAEVAARFSLDSMPGKQMAIDADLSAGMINEEQAKARRAEVEAESGFYGAMDGASKFVKGDAVAALLITAINIVVGLAIGVFSHGVPVGEAFHTYTVLTAGDGLVSQIPALIVSTAAGLLVSKGGVAGKTGAALGDQLGRYPKAFGMVAVLMGVLAIVPGMPFVPFAAFSALSGYAAWTMSKRARARAVHEQIVAAHEDAQAAIVEQPISATLAIDAVRIEIGYALLPMINDNQREPRLDDQVRALRRQMATDFGFVLPSVRIIDNMGLKPNEYVITIKETEAARGEIRLDKLLLINPGGGPVGLPGENTREPVFGLPALWIDRELRDEAGFRGLTVVDCGTIITTHLTELVKDNIADLLSYTETQKLLMEVHRDAEKLVADIVPSKVSISSVQRILQNLLAEGISIRDIPTILEGIAEAAPMTSNLTQMTEHVRSRLARQISATQVRGDAIPVVTLSAEWDQAFADSILGSGDDRQLAMAPSSLQRFIASVRDTYDRLAADGEIPCLLTSPAIRPFVRSIIERVRPATVVLSQNEIHARARIRALGTIG
>NZ_CP010836.1|WP_044332182.1|2525199_2526780_+|flagellar-hook-length-control-protein-FliK
MNITPFGFPIATPALAVPSFAGGVQGFGALLDATLAQPAGTAPVALPVQPTALAPIEATALAAAPQLGRGLRAPLLGMAPTDASEATTPPALAPTIPAAIEGQMRVAGNVPPPAAASIAAAPLLAEAGPAPEAAPAAKTSTPPSSAVPPPATPIRAPEAPVARAQPEAAPAGDPPPGTAATPAADTPAPRAPIREPAARSRPQPKTSQPAAAPAAAMDTAMDTPEDAATGTAPAAAVQPIAIDTPAPAPLPADAGAPPPAAPDFSAVAVAAATQQPIQPAPAPATAAPAPRKSATAPGTTAAPADAPAMARTATAPGAPADTALKPTPALSPDAGTEHGDTRPDATLPESGDLPAPLPPANQSAPSFATRLAAATPPPALPAEVEIAARPGHLGQTMGVEIARRVEAGDDTLRVRMNPAELGRVDVTLAFDSAGSLKATVSADSARALDLLRQDLPDLARTLDQAGVRTDAQSFRFESRTGSDGQQGQPHPQRGDDARRHQAANDEFEPTPAYRAIRGDGQVDVLA
>NZ_CP010836.1|WP_044332184.1|2526789_2527455_+|flagellar-hook-assembly-protein-FlgD
MTSIAPTTATSAVSAATATTAGAKLSADYTMFLKLLTAQMQNQDPLDPMDTAQYTQQLVQYSQVEQSIEQNTTLKSILASLGTQNLTQASALIGKTVESADAVSGLSEATPAQWSWTADRTVAALTARITDAAGKTVDTRTVDAGDLSGGIRWDGTTTSGRTMPPGEYGIALEGVDASGNALPVTAHAIGTVSDVELANGAITVTINGAKMPASSLVRIGQ

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Crispr_ID: NZ_CP010836_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010836_5

2706875-2706966

Orphan

Consensus_repeat	Method
GCGCCTAAACTTCCTAAACTTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010836_5

>merge|NZ_CP010836|5|2706875-2706966|CRISPRCasFinder
GCGCCTAAACTTCCTAAACTTCGCATCCCCTCGCCTGCCCGTGGCGAGGCCTGCCGAAAAACGCGCGTGCGCCTAAACTTCCTAAACTTCGC

>NZ_CP010836|5|5|2706875-2706966|CRISPRCasFinder
GCGCCTAAACTTCCTAAACTTCGC	ATCCCCTCGCCTGCCCGTGGCGAGGCCTGCCGAAAAACGCGCGT
GCGCCTAAACTTCCTAAACTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010836.1\|WP_044332418.1\|2712818_2714165_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349874
NZ_CP010836.1\|WP_044332429.1\|2717560_2718751_+\|esterase	unknown	unknown	gnl\|CDD\|199888
NZ_CP010836.1\|WP_155006394.1\|2706139_2706667_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044332412.1\|2708345_2709443_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP010836.1\|WP_044332399.1\|2699220_2700345_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176251
NZ_CP010836.1\|WP_044336207.1\|2705825_2706005_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_077228836.1\|2704994_2705201_+\|DUF2945-domain-containing-protein	unknown	unknown	gnl\|CDD\|378576
NZ_CP010836.1\|WP_044332404.1\|2704604_2704826_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044332413.1\|2709574_2711389_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP010836.1\|WP_044332426.1\|2717126_2717306_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044332424.1\|2715804_2717130_-\|AtzE-family-amidohydrolase	unknown	unknown	gnl\|CDD\|236409
NZ_CP010836.1\|WP_044332398.1\|2698831_2699182_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|214902
NZ_CP010836.1\|WP_044332400.1\|2702263_2703925_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
NZ_CP010836.1\|WP_044332409.1\|2707048_2708212_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP010836.1\|WP_044332402.1\|2704159_2704588_+\|BLUF-domain-containing-protein	unknown	unknown	gnl\|CDD\|377423
NZ_CP010836.1\|WP_173426274.1\|2714399_2715743_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP010836.1\|WP_044332416.1\|2711978_2712710_-\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044332414.1\|2711385_2711847_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP010836.1\|WP_044336206.1\|2700483_2702247_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP010836.1\|WP_044332406.1\|2705233_2705491_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349489

Protein	Function_ID	Function_description	E-value
NZ_CP010836.1\|WP_044332429.1\|2717560_2718751_+\|esterase	gnl\|CDD\|199888	cd02858, E_set_Esterase_N, N-terminal Early set domain associated with the catalytic domain of esterase. E or "early" set domains are associated with the catalytic domain of esterase at the N-terminal end. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term esterase can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminal domain of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others.	2.30749e-32
NZ_CP010836.1\|WP_044332412.1\|2708345_2709443_+\|nitroreductase-family-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	4.22121e-20
NZ_CP010836.1\|WP_044332399.1\|2699220_2700345_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176251	cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain.	4.483e-135
NZ_CP010836.1\|WP_044332398.1\|2698831_2699182_+\|dihydroneopterin-aldolase	gnl\|CDD\|214902	smart00905, FolB, Dihydroneopterin aldolase. Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers.	8.38684e-22
NZ_CP010836.1\|WP_044332413.1\|2709574_2711389_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	2.15803e-124
NZ_CP010836.1\|WP_044332424.1\|2715804_2717130_-\|AtzE-family-amidohydrolase	gnl\|CDD\|236409	PRK09201, PRK09201, AtzE family amidohydrolase.	0
NZ_CP010836.1\|WP_077228836.1\|2704994_2705201_+\|DUF2945-domain-containing-protein	gnl\|CDD\|378576	pfam11160, DUF2945, Protein of unknown function (DUF2945). This family of proteins has no known function.	2.45748e-17
NZ_CP010836.1\|WP_044332400.1\|2702263_2703925_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0
NZ_CP010836.1\|WP_044332409.1\|2707048_2708212_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	1.74637e-170
NZ_CP010836.1\|WP_044332402.1\|2704159_2704588_+\|BLUF-domain-containing-protein	gnl\|CDD\|377423	pfam04940, BLUF, Sensors of blue-light using FAD. The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.	4.65903e-35
NZ_CP010836.1\|WP_173426274.1\|2714399_2715743_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	3.6311e-145
NZ_CP010836.1\|WP_044332418.1\|2712818_2714165_+\|M28-family-peptidase	gnl\|CDD\|349874	cd03877, M28_like, M28 Zn-peptidase, many containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Some proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.	3.16483e-51
NZ_CP010836.1\|WP_044332414.1\|2711385_2711847_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.33691e-59
NZ_CP010836.1\|WP_044336206.1\|2700483_2702247_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	9.07634e-38
NZ_CP010836.1\|WP_044332406.1\|2705233_2705491_+\|hypothetical-protein	gnl\|CDD\|349489	cd10567, SWIB-MDM2_like, SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins. This family includes Schizosaccharomyces pombe upstream activation factor subunit spp27, Saccharomyces cerevisiae upstream activation factor subunit UAF30, Chlamydiae DNA topoisomerase/SWIB domain fusion protein, Arabidopsis thaliana zinc finger CCCH domain-containing proteins, AtC3H19 and AtC3H44, and similar proteins. S. pombe spp27, also termed upstream activation factor 27 KDa subunit (p27), or upstream activation factor 30 KDa subunit (p30), or upstream activation factor subunit uaf30, is a component of the UAF (upstream activation factor) complex which interacts with the upstream element of the RNA polymerase I promoter and forms a stable preinitiation complex. S. cerevisiae UAF30, also termed upstream activation factor 30 KDa subunit (p30), is a non-essential component of the UAF. It seems to play a role in silencing transcription by RNA polymerase II. The SWIB domain found in Chlamydiae DNA topoisomerase may play a role in chromatin condensation-decondensation, which is characteristic of the chlamydial developmental cycle and not found in any other types of bacteria. AtC3H19, also termed protein needed for RDR2-independent DNA methylation (NERD), is a plant-specific GW repeat- and PHD finger-containing protein that plays a central role in integrating RNA silencing and chromatin signals in 21 nt small-interfering RNA (siRNA)-dependent DNA methylation on the cytosine pathway, leading to transcriptional gene silencing of specific sequences. This family also includes many uncharacterized proteins containing two copies of SWIB/MDM2 domain.	3.7598e-35

>NZ_CP010836.1|WP_155006394.1|2706139_2706667_-|hypothetical-protein
MVESGPAAYESDTEKAAVVITPGSCIHLPMAPSFSIDQRTGEIRIGDTVVLKSGEQRTAVEPQVATLADSSRDHGNGFNWLHLRGLTFGGQPAHLSLCFHHNLLDRASWSVRLPNAETDGDWPTRDAIDAEIAFVRRTLTDEMGISAGLFPWGEVWSSFDTKGFLAANGLRYHRA
>NZ_CP010836.1|WP_044336207.1|2705825_2706005_+|hypothetical-protein
MAEKFERHRQPWRQDEIQKLHTLAKKGMPLRAIAKALTRSEESVKDRAKADGLSIAKLH
>NZ_CP010836.1|WP_044332406.1|2705233_2705491_+|hypothetical-protein
MAETKARGGIAKPVTPSPELAKIVGTADLPRSEIVSKMWEYIKKHDLQNPENKREILADATLEPIFGAKKVTMFEMNKHISKHVK
>NZ_CP010836.1|WP_077228836.1|2704994_2705201_+|DUF2945-domain-containing-protein
MTERLKQGDRVSWKSHGGTAHGNVVARQTRDTKIKGHQVRASAHAPQYIVESGKGGRASHKPAALTKE
>NZ_CP010836.1|WP_044332404.1|2704604_2704826_-|hypothetical-protein
MRVRLLMVGVLVALGGCGGGGTTGTNYSDAPPMAEIVATPSPRASATPDAPPDETPAYAITNEDAEMLDNAAD
>NZ_CP010836.1|WP_044332402.1|2704159_2704588_+|BLUF-domain-containing-protein
MLQILYVSTANPALGPVDPGPILEVSRLWNEGDGITGLLYSDGMRFLQVLEGPQAETAACMARIRRDRRHKAVVELSRRAIEERQFGDWAMAHRGPGDEAETFIARVDAMVAGASLGVRATFEGFVRERMRSGRVRRQAARA
>NZ_CP010836.1|WP_044332400.1|2702263_2703925_-|2-isopropylmalate-synthase
MLRDPSVKYRAFPQVDLPDRQWPSRTITQPPRWLSTDMRDGNQALIDPMDGEKKQRFFDLLCRVGIKEIEVGFPSAGATEFDFISGLVRDGKVPDDVTIQVLTQSRRDLIETSFESLRGAKTAIVHLYNAVSPAWRRIVFGMSRDEIRGIAIEGAKVMRDCAAAQPDTDWRFEYSPETFSTAELDFSVEVCEAVMDILQPTADKPIILNLPATVEAATPNIYADQIEWFGRNIRNREAVVISLHTHNDRGTGVAASELGLLAGADRVEGCLFGNGERTGNVDLVTLALNMYTQGVDPGLDFSDIDEVIQTVEYCNRLPVHPRHPYAGELVFTAFSGSHQDAIKKGFAAQEARNDQMWDVPYLPIDPKDLGRDYEAVIRVNSQSGKGGVAWVLEQDRGLKLPKRMQADFSRHVQALADETSRELNAADIGALFDRTYLPGDADRIALVDYEETGGTGKRVFVGRIAIDGEPRSISGRGNGLISGVIDALGGSTGPRLDVVDYSEHAIGNGADAQAAAYVECRTDDGRTVFGVGIDADIATASVRAVLSAANRAG
>NZ_CP010836.1|WP_044336206.1|2700483_2702247_+|HAMP-domain-containing-protein
MSIGSFVRNSALAMMAILLVGGLFAISRLDNIRMGGKVQVAQQMNADLIADILPPPEYVIEPYLEATLLARDPDTVAQRAARLAELRKLYDERHAFWITANVDADLKAQLLEHSHPAAMRFWTIAQGAFLDAVCRQDRPAIDAAYGQLSAAYADHRREVDKLVSLTLDRQKAVAAEGAREFMVAIGIVLALGVVVGAQALHFYITMYRRVLEPIGTLSGLTARLASGGDADIPYRERTDEIGSIAVGLEHYRASAAARIEADARNLAEQRRMTDLLGGGLLALREGDLSHTIDQPFPAEYEVLRQNINEAIAALRDKVQLLRDSAGNIGVTSRELAQGSEDLARRTEGGAHNVAKATMALVQIEERLKDSMQAADTTVKRADGAIAMVEDSRSTTGRAVQAMERARGSALNIDGVIEGLDKIAFQTRVLAMNAAVEAGRAGESGRGFAVVADLVSALAMRAEDQAKQAREMLTETQADILQAADAVAQTQSALDAVTGDFEAVHALISAIDRDNHAQSTAVSEVAHAMKGLDTITQQNAAMVEQTSAALGNLSGEVGALATRAGAFRFERDGGAPLAVPAAPRPTVH
>NZ_CP010836.1|WP_044332399.1|2699220_2700345_+|zinc-binding-dehydrogenase
MTDRFSGLELRSTVSAAGQLTLSLETVDRDAPGPDEVIVRVEAAPINPSDLGLLLGPADLSTLRPGTGDDPVLTADIPPARMAAMKPRLDQSLPVGNEGAGTVVAAGANAQALLGKRVGMMGGAMYAQYRKLPARDCIVLPEGASAADGASMFVNPLTALSMVETLRREGHKALVHTAAASNLGQMLNRVCIADGVPLVNIVRSEAQAEILRAIGATHIVDSSAADFREKLTDAIAETGATLAFDAIGGGKLANTILHAMEAAANRTATEYSRYGSSTFKQVYIYGALDLGPTELDRGYGFAWAVSGFLLTPFLMKLGMEGVMRLRARVAAELTTTFASRYSATISLADVLDPEIVAAYARKATGEKYLIDPSR
>NZ_CP010836.1|WP_044332398.1|2698831_2699182_+|dihydroneopterin-aldolase
MPDYDICLDGLEVSIGLGIHPAERAAPQRVTLDVAMTCRYPARPEDRIDAVVDYDFLRTRILTLAAAGHIELQETLCEEVATLALADPRVVHVRVRSTKLDIYPDARIGCEITRTR
>NZ_CP010836.1|WP_044332409.1|2707048_2708212_+|NAD(P)/FAD-dependent-oxidoreductase
MYDVIILGAGAAGLMCALTAGQRGRRVLLVDHADRAGKKILISGGGRCNFTNIATAPDRYLSANPHFAKSALGRYTPRDFLDLVERHGIKWHEKTLGQLFCDGSAAQIVEMLLGECAIGGVEIWLGHAATVEHGDGRYRIECGGRSASAPALVIATGGPSIPKMGATGFAYDLARRFGLKVVEPRPALVPLTLAADQALFRELSGVSTDVVARAGKAAFREAALFTHRGLSGPAILQASSYWRHGEPVEIDLLPDAPRGWLPAAKRARPRATLRRVLAERLPDRLAETLAEQLALPGELVGATDRTLEEAERRLAAWRFLPNGTEGFAKAEVTVGGIATADLSSQTMEARRVPGLYAIGEAVDVTGWLGGYNFQWAWASGWAAGMAV
>NZ_CP010836.1|WP_044332412.1|2708345_2709443_+|nitroreductase-family-protein
MNRRQMLVGAGATVAVAGATAYATLSAMGSPSDYAEGIASLRAPLAHTPSGLDLVRYATLAPNGHNTQPWRFRLGAKRIEILPDFSRRTPVVDPDDHHLFVSLGCAAENLSLASAARGAPGVVGFDPRGGVVRFDFERAAAIPSAMFDAIGRRQSTRGVYDGRGVDTATLTMLAKAVATVPGVGLVLMTDRTQIDRLRDLVLAGNDAQMADDAFVRELKSWLRFNPQQALRTRDGLYSVASGNPALPDWLGPPAFDWFSTAQSQNEQYARQIRSSAGIAVFVGAGAHPEHWVRVGQACQRFALQATALGMKHAFLNQPVEVPRLRPELASLVGLPGRRPDIVIRFGYGPATPWSARRRAESVIIT
>NZ_CP010836.1|WP_044332413.1|2709574_2711389_+|DEAD/DEAH-box-helicase
MPFSSLPALLAEALAARGYAAPTPVQAAVLEPEALGRDLVVSAQTGSGKTVAFGLAMAGDLLGEDGRVIPTREPHALIIAPTRELALQVSRELIWLYGPTGARIATCVGGMDASKERRQLNMGAHIVVGTPGRLRDHLERGALDLSALKAAVLDEADEMLDMGFREDLEEILDATPNTRRTLLFSATMPKPIVMLAKRYQKDALRITTVGEDRGHGDISYQAVTVSPSDIEHSVINLLRFHEAETAMLFCATRDNVRHLHATLVERGFAAVALSGEHSQNERNQALQALRDRRARVCVATDVASRGIDLPSLSLVVHVELPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRRRRVEAMLRGARINADWIDAPTADQIRANDRERLLAALLAPIEVDEEDAALAERLLAEKTPQEIAAALVHAHRAAMPQPEEMAEQTPEARRAAQAERHRPGFEDVVWFRMDIGRRQNADPRWVLPLICRRGALTKNDIGAIRIGPNETMFQVPRAIASKFAAAVAKTAEADEDVRIEAAPDGPPQHDGPRGHDGPRPQRNGPNRSGPPRSGPGGPPRGRPGADGPGGGGGAPYRSNVGAPHKARPFRKGPPRG
>NZ_CP010836.1|WP_044332414.1|2711385_2711847_+|YaiI/YqxD-family-protein
MSGPVRILVDADACPVKEEIYKVAFRHEVPVVIVSNAWLRIPQHPLLSRQVVSDAFDAADDWIAAAADAGCVVITADILLADRALKAGAQVLSPTGKPFTPSSIGAAIATRAIMADLRAGGEQIGGPAPFAKTDRSRFLGALDQVVVGLKRGR
>NZ_CP010836.1|WP_044332416.1|2711978_2712710_-|DUF3800-domain-containing-protein
MSEFSDYIVFADESGDHGLISIDPQFPVFALVFCVFEKTDYINEIEPSFRRLKFKYFGHDAAVLHEREIRKQEPPFAFLRQDVALRDGFMTDLTKIMVGARFHAYCAVIDKLKHKARYSDPWNPYEIAMQFCMEKLSNRLVADGQRGRRTHVLFEARGREEDRQLELEFRRVASNDKRWGWRAVDFMRTPLEPLFVPKAANMAGHQLSDLIARPLALRALRPDQPNRAFDIVAKRIHHFKVFP
>NZ_CP010836.1|WP_044332418.1|2712818_2714165_+|M28-family-peptidase
MRRTTTAAFAALLAATTFATPATAQTVSESSVRGHVSYLAGDALRGRGSATPDEAAAAAYVAAVFRGYGLQTAPGMTGYTQTAEIIGYRLDSPAVLTVNGTAIASPLLFAASGQPVRGTLSLFAGTDPKVAPASDVVILTAPGNPLRLAGALDPAKVRLVIVRATADVRSAYDRVGGKPRMPTTLKGQPPRPRPNVVALPDAAFDALVAQPGAQVALDLPGLVEEVRTTTNAIGYLPGTDPKAGVLLLSAHLDHLGPRPDGKVMHGANDDASGTTAVLELAQALAGKKHRRGLLFVAYGSEEIGGFGSRYFAANPPVPLDRIVANIEFEMIGAQDPKLPAGDMMMTGYERSNLGAALKDHGGRVAADPYPEQNFFQRSDNYSLALKGIVAHTISGWAVVPTYHTPEDTLANLDIPFMARAIQSLIAPVRWMADSRFTPQWAPGGRPRE
>NZ_CP010836.1|WP_173426274.1|2714399_2715743_-|NCS2-family-permease
MGEPVEERAGVLERRFGLAAAGTNVRTEVLAGATTFLTMAYIILVNPAILGQAGMPVAAVAAATCLAAGVASILMGSLANMPLALAPGMGLNAYFSFTVVQAMGVPWQVALGCVFVSGVAFLVLTVAGIRQMIIASIPQHLFAAVAGGIGLFIAFIGLRNAGIVVSNPATAVALGDLRAPGAVLALVGLVLVAALSAWQVRGAILIAILATTALGWATGLVAFTPQPYDLGAIAQTAFQLDLGGVFGFSGHGLALFEILFVFLFVDLFDNIGTLVGVTRRAGLIGADGRIPRLNRILVADSFATMFGALMGTSTVTSYVESAAGVQAGGRTGLTAIVTGALFLVAMLAAPYAQLIPLAATAPALVLVGALMMAPLAEVPWDEPEVALPAFLTLVMIPLTFSIANGLAFGITAHALLKLVRGRISKSDWLLLVLAALFVARFAWMAGG
>NZ_CP010836.1|WP_044332424.1|2715804_2717130_-|AtzE-family-amidohydrolase
MSMLAGIAADVRSGRRSAVAIACSALAALDRDNGELVAATRILAAEALDAAAAIDAAVARGEDPGPLAGVPFGVKDLFDVAGLATTAGAGMRRDASPAPCDAEAVRRLKDAGAVLVATLNMDEFAYGFATINAAFGTTRNPHDRARLAGGSSGGSAAAVAAGMLPLTLGSDTNGSIRVPAALCGVYGLKPTHGGLPMAGVFPFVDSFDDIGPFATSVADLQLVWGVLGGAAEQGVAAPRVARLGGWFERNVAPELLQGIDAIGAHLGGIPMVELPEVEAARSAAFLMTAVEGGSLHLPELRRRAAEFDPQTRDRLIAGALMPGSAYRAAERFREWFRAEAARLFEAQDVLIAPAAGVEAPLVEDPMVVVDGMRVPARAHLGIYTQPLSFIGLPVIAAPLLRPGKLPLGFQLVGKPGAEATLFAFAARLEADGLIGVTSPAT
>NZ_CP010836.1|WP_044332426.1|2717126_2717306_-|hypothetical-protein
MPDTSVNYVALARSLAEYRGIILEGDSLAGVADILRTLKGHAEKVEASNCGRSPGDAMA
>NZ_CP010836.1|WP_044332429.1|2717560_2718751_+|esterase
MKPFVAALFATMCLASIGSASAQTAAPAPAPASVTEDFKPSSVNQPGQQYPQVNSQGIARFKVVAPDAQSVKVSLGLGGRGGTVLTKGADGTWTGTTEGPLDEGFHYYHLTVDGGTFNDPGAMNFYGSTRWESGIEIPAHDADFYALKNVPHGRVEQVLFHSPSTNTERRAFVYTPPGYDKNARERYPVLYLQHGWGEDETAWSNQGHANLILDNLIASGKARPFLIVMTYGMTNDVRPGGMASFDIKPFKTVLVDELIPYVDANFRTLADANHRAMAGLSMGGFETKLIAPANLDKFAYIALLSGGTFTVDDVNKTPGFKEKVKLAFVSFGSRELEGRGMGGPPGGGPRVDPRVSAEAVKQAGVNSVFYVSPNTGHEFLTWRRSLRELAPLLFKD

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Crispr_ID: NZ_CP010836_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010836_6

2850285-2850376

Orphan

Consensus_repeat	Method
GAGCGAAGTTTAGGAAGTTTAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010836_6

>merge|NZ_CP010836|6|2850285-2850376|CRISPRCasFinder
GAGCGAAGTTTAGGAAGTTTAGGCGTATGCGCGTTTTTCGGCAGGCCTCGCCACGAGCCGGCGGGGGGATGCGAAGTTTAGGAAGTTTAGGC

>NZ_CP010836|6|6|2850285-2850376|CRISPRCasFinder
GAGCGAAGTTTAGGAAGTTTAGGC	GTATGCGCGTTTTTCGGCAGGCCTCGCCACGAGCCGGCGGGGGG
ATGCGAAGTTTAGGAAGTTTAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010836.1\|WP_044332580.1\|2846996_2848040_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NZ_CP010836.1\|WP_044332591.1\|2850988_2851852_-\|ATPase	unknown	unknown	gnl\|CDD\|225518
NZ_CP010836.1\|WP_044332594.1\|2854085_2855075_+\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|372642
NZ_CP010836.1\|WP_044332588.1\|2850601_2850868_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044332598.1\|2857791_2858715_-\|nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|378409
NZ_CP010836.1\|WP_044332581.1\|2848036_2849188_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
NZ_CP010836.1\|WP_044332587.1\|2849672_2850107_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044332573.1\|2843002_2844394_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP010836.1\|WP_044332579.1\|2846030_2846906_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP010836.1\|WP_044332577.1\|2845144_2845984_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224513
NZ_CP010836.1\|WP_044332575.1\|2844401_2845148_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NZ_CP010836.1\|WP_052507893.1\|2858757_2859549_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044332595.1\|2855408_2856641_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|170049
NZ_CP010836.1\|WP_044332596.1\|2856704_2857127_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350313
NZ_CP010836.1\|WP_044332593.1\|2852006_2852960_+\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|223982
NZ_CP010836.1\|WP_044332597.1\|2857126_2857390_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP010836.1\|WP_044332571.1\|2841944_2843006_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP010836.1\|WP_162184719.1\|2852968_2853934_-\|asparaginase	unknown	unknown	gnl\|CDD\|199208
NZ_CP010836.1\|WP_044332568.1\|2840278_2841961_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP010836.1\|WP_044332583.1\|2849276_2849672_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010836.1\|WP_044332580.1\|2846996_2848040_+\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	4.89983e-83
NZ_CP010836.1\|WP_044332594.1\|2854085_2855075_+\|bile-acid:sodium-symporter	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	3.10935e-106
NZ_CP010836.1\|WP_044332597.1\|2857126_2857390_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.70702e-08
NZ_CP010836.1\|WP_162184719.1\|2852968_2853934_-\|asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	4.5215e-81
NZ_CP010836.1\|WP_044332581.1\|2848036_2849188_+\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	1.36856e-132
NZ_CP010836.1\|WP_044332591.1\|2850988_2851852_-\|ATPase	gnl\|CDD\|225518	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].	1.74152e-67
NZ_CP010836.1\|WP_044332573.1\|2843002_2844394_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	4.6437e-11
NZ_CP010836.1\|WP_044332568.1\|2840278_2841961_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.03276e-35
NZ_CP010836.1\|WP_044332577.1\|2845144_2845984_-\|hypothetical-protein	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.50171e-21
NZ_CP010836.1\|WP_044332575.1\|2844401_2845148_-\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	7.83686e-16
NZ_CP010836.1\|WP_044332595.1\|2855408_2856641_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	2.00015e-71
NZ_CP010836.1\|WP_044332593.1\|2852006_2852960_+\|rhodanese-related-sulfurtransferase	gnl\|CDD\|223982	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only].	5.59582e-150
NZ_CP010836.1\|WP_044332598.1\|2857791_2858715_-\|nucleotide-binding-protein	gnl\|CDD\|378409	pfam10137, TIR-like, Predicted nucleotide-binding protein containing TIR-like domain. Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.	1.60946e-28
NZ_CP010836.1\|WP_044332571.1\|2841944_2843006_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.79648e-23
NZ_CP010836.1\|WP_044332579.1\|2846030_2846906_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	2.62933e-121
NZ_CP010836.1\|WP_044332596.1\|2856704_2857127_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350313	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.10126e-60

>NZ_CP010836.1|WP_044332587.1|2849672_2850107_+|hypothetical-protein
MRFAVPIAAAVLLSGCNQGPETVEQCYSRLSRLADTLPSAASPVHAVYTFDLSKIDSDRRNQIAASGIDGRGPPTIIAANQPAGVAGAAFENTQPGPNGVLLSAQAPALLRVAGGAHASAGDAIRDGCRMLPGARLKAVALTAG
>NZ_CP010836.1|WP_044332583.1|2849276_2849672_+|hypothetical-protein
MKAIMLLAAILAPASVSATPTDQFIARWEAASRAPKQPGVTAEQALATPELKALVEEFFAVANEYRRQILEARAAGTPPRACPPKSLDLSIDTVLADIRSLPTTWQSRDFADSFGAALDKRYPCSANAQNT
>NZ_CP010836.1|WP_044332581.1|2848036_2849188_+|N-acetylglucosamine-6-phosphate-deacetylase
MTRTALTGAAIVAEGRELHGHALLLDGAWIAAIVPEAAIPADAGRVALGGGWLLPGFIDTQVNGGGDVLFNDAPTVEGIRAIAAAHRRFGTTGILPTLISDDLSVVEAAIDAVDAAIQGGVPGVLGIHVEGPFLNQAKRGIHDATKFRTIDDSVIALLTRPGPGVRLVTLAPELAPPGAIRALVAGGVIVAAGHSMADYAQTRAAFDEGLHGFTHLFNAMTQLGSREPGMVGAAIEDRASHFGLIVDGHHVHPAALKIAIAARGIDGAMLVTDAMPPVGGTRGAFTLMGTEVKLEDGTLRGPDGTLAGSALTMAAAVRNAMDLLGHTLAEASAMASANPAAFLRLGERTGAIAPGLAADLVHVDAARRVTRTWIGGVVSVVGE
>NZ_CP010836.1|WP_044332580.1|2846996_2848040_+|SIS-domain-containing-protein
MVASESLMIREAAEAAAVCERQIAANRDAVRDAAQRLRALDPPFAATLARGSSDQAAGFAKVLFETRLRLPVLSHAPSIGALYDATSPKFRGIPLFAISQSGRSPDLLAAAERAKAQGAVLVVLVNDAASPLAAMADILIPLHAGPETSVAATKSFIATLAALAHLTAEWSGDAAVLGALDGIGDVLRSGWPLDWSEALPPLVGASSLLVLGRGLTFPIAGEAALKFKETCAIHAEAFSSAEVAHGPMTLVEAADPVFVFGPADAARTGLRDRIASFAERGATVIAAGDPDDIAPAAIRLPSVTGAHPIIGAIAMIQSFYRFANALSLARGRDPDRPPYLAKVTRTL
>NZ_CP010836.1|WP_044332579.1|2846030_2846906_-|N-acetylmuramic-acid-6-phosphate-etherase
MSTETVDPRYVDIDRWPTETAVAAMLEGQIAAVAALTGQEGAIAAAADAAAIRLGRGGRLVYAGAGTSGRIAVQDGVELGPTFGWGEDRLVYLMAGGPGAFLHAVEGAEDDGDAARAEIAAAGVGPDDVVIGVAASGRTPYTIAAVEAGRAAGALSVAVANNPGTPLLAAAEHALLADTGSEAVAGSTRMKAGTAQKAVLNLFSTATMLRMGRVHGGLMVDMRISNAKLVRRGAAMVRDLAGVDDAAALAALEAAGRDIKAAVLVARGMDVAAARALLAASGGSLRAAIAG
>NZ_CP010836.1|WP_044332577.1|2845144_2845984_-|hypothetical-protein
MQNLWFITNPNSGTTSRPKCEALEAVFSESGLELAGRTEFPAHDLPTGAELDAAKVDTVVLFGGDGTINAALSALAEWDGAFLILPGGTMNLLAKGLHSETDPHRIVHAARACDRRVALPFVEAGEHRAFVGLILGPAAAWARAREAARKGRVSRLIGAARAAWRKTFGRSGIRLDGAPGLRDQYQAVFVTPDLDSLHVAAVDARDWGSIVQLGWEWVTGDWIAARAVSETRTETLRVRGKRPSTALFDGEPVTLPPRVAIRAGKSLETFIKTREEAAT
>NZ_CP010836.1|WP_044332575.1|2844401_2845148_-|metallophosphoesterase
MTRLFHVSDVHFGREDVAAIEWFGRRVAEEQPDAIVMTGDLTMRARASEFAAAGKWLESLGRPVTVEVGNHDLPYFNPLARLVAPYRRYKTIERMIEKPLDLKGVGVVPLKTTARAQFRLNWSKGNVSIRALRKSLALVEAVPKGDLVFVAAHHPLIEAGTQASSRTRRGREALAALATAGAHAVLTGHVHDPFDIAHDVGGRTVRLIGAGTLSERVRSQPPSFNEIRIDGATFQTIARFMGEPDVAL
>NZ_CP010836.1|WP_044332573.1|2843002_2844394_+|TolC-family-protein
MIRLLALLVALVAAAPVAAQPLALDEVLRSSATHAPAILEAITRERQADGRRLSAEGAFDLLFEGEAQSRALGYYDGTVVEGRATRPLATNGGALYGGYRVSRGDFPTYEDKAFTNRLGEVKVGGVFSLMRDRLIDERRGRIGLAGGDTVLARLDREMVAIGVQRRAIDAYQAWVAAGVRTSVYRDLLSLATARQASIERQIALGARPQILGIENRQNILRRQTLLVRAEQELAAAANALSFYLRDAEGERVVPSADRLPPAFPTLRLPALGPDLARRIERPDLAAILVRLDQVEVKRLLAENEMRPRLDVRAELAKDVGDVGLGGASRTPAEGIVGLRFSLPLERRQARGKIAEAAAEADGLRLRRRLIEDQILVEVNGLAIQATAADQLVALAADETALADRMAEAERRRFQLGASDFIVVNLREESAADARLRQIDAEYRRASARAELVAATVDRGQLGL
>NZ_CP010836.1|WP_044332571.1|2841944_2843006_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MPFQPEHIAHFPTLASIRPPRATRVLAWLIAIGIGVVAAILFLVPWVQTSSGAGQVTALDPEDRVQDVTALVPGLVEQWYVRDGDRVRRGDPIARIVDNDPNLLARLAAERAQVVAEIAAAQQAMAVAQIDVGRSGQLLTEGLIARRDYEASQIKVADHRAKLAEARAKLSRVDVALNRQSAQTVRAPRDGRIQSINAAAGATLVSAGDRLAALAPETPVRVVELMVDGRDIAMIRPGRPVRLAFEGWPAIQFSGWPSIAQGMFDGRVRSVDPSAQPTGLFRVLVEPMPGKPVWPNADYVRLGAKVRGWIQMETVSVGYELWRTLNDFPLEFRRPSIEAAPKASAPAPAEKGK
>NZ_CP010836.1|WP_044332568.1|2840278_2841961_+|ABC-transporter-ATP-binding-protein
MAETRPGIRAFAGWIGLVLAPDAAFVRLAVIYGVAISLLSLATPISVQLLINSVANTALPTPLFTLAGLLFLLLLLAGVLAAFRVHLLALFEQRLFARIVAEITLRAVHAQNPFFADARRGDLFNRYFDLMTVQKAMPSLLLGGFTIVLQGAVGLVVTSFYHPFFLAFNVVLVLALFVIWQLWASGAIRTAVAKSHAKHAAAHWLESVGGSNGFYKSSRHLDYAMDRSEAITANYVGAYRRHFRYTFAQTLALLLVYATASAALLALGGWLIIQGQLSIGQLVAAELILSGVFYGIAQFGPYLEALYDLAAGLEELSLFWDVPQESGSAEGEGPVDGAIRLRRVEHQGHGFDFEVAAGEQLAVVAAPGVERALTMLLKRHQSPARGLALIGGRDIAGLDMYRLRAEVMVLDRPSFVEMSIRDYLSLAASGDAARMVDVLETVGLAERLGGLPDGLDTIVSTSGWPLSVGELMALKLAAALLARPRLLVLSPLYDLLPPERVDAVLAALRGATTVLQFTRRPQGLARDGALWLGAREQRRCADLDELVACAREGGSDALSA
>NZ_CP010836.1|WP_044332588.1|2850601_2850868_-|hypothetical-protein
MSQGEIEFIKDTVQRFYGADAVIRNFGPDPNRLEIHVETDAETDMRKYDCLGVLLTRIDRAQISLEVTRRGEKVRGSAKLAYRQGVIL
>NZ_CP010836.1|WP_044332591.1|2850988_2851852_-|ATPase
MVYYLGIDAGGSHCRSRLIDASGTVIGSGKTGPANARVGLEILHATLLDAIGQAIAEAGLDPASVATIRAGMGIAGISRPGVRERLESLAFPFASVAYETDAAIANIGAHGGRDGATLVIGTGSIAQVRVNGRDFAIGGYGFPISDEGSGAALGLSAMRHALRALDGRTTRTPLSTAVSERFGHDTARAIAWMDEATPKDYAQLAPIVMDHAEADDSIARSIVEDAALHVERFIETVFAKGAPACALAGGLSLRMRPWLRARTVARLSEPMGDPLDGALLLAGFVRE
>NZ_CP010836.1|WP_044332593.1|2852006_2852960_+|rhodanese-related-sulfurtransferase
MQNPADPIRVVALYRFTPFAECAAIRAPLAAACDAVGVKGTLLLAREGINGTIAGADAAIDHVLAHIRALPGCADLDVKESRAPTMPFLRMKVRIKREIVTMGEPDIDPLDAGHYVAPHEWNALIERPDTILIDTRNDYEVAIGSFDGAIDPRTHSFRDFPAWFRAHRAEFEAEGRMPQVAMFCTGGIRCEKATAFVKAEGIDSVFHLKGGILAYLEAVPPEASRWHGECFVFDERVSVGHGLVPGDYGLCRACRMPVGAEDRASPLYVEGVSCPACHATRTDEQRTRYAERHRQAMLAEARGERHVGAVFPAPDQG
>NZ_CP010836.1|WP_162184719.1|2852968_2853934_-|asparaginase
MSSLVLIDAGGTIASLPDAQGVLVGRAGSARLRDVLSADAREGVVERQAYAGLSEDMGLADAMRIVTIVAQAEAEGVGGVLVAHGTDTMEDVAFLVDLFHAGQGPVLFTGAQRAASAPGCDGPANLHDAVTVARDPGARGIGCAIVFGGRILPARSARKLDSSGPEAFGPHGSAIGRVDDHGVRFTATPRRPAPFAIVDPEPRVEIAALGLGSGPALVDALVAGGVRGLVVEGFGRGNVPMDVVPAIERARAAGVLVGIATSCIGGGTAPTYQSGARLAALGAVGAEDLSARKLRLLFAVALGGGRDAATAERLAREWLAA
>NZ_CP010836.1|WP_044332594.1|2854085_2855075_+|bile-acid:sodium-symporter
MLRRVIAIFEPFVLALLATVLLATLLPARGAGVPWFEAITDAAIVLLFFLHGAKLSREAILDGARNWRLHLAVFAVTFGLFPLLGLGIASIPRLDPGLAAGMLFLTLLPSTVQSSIAFTAIARGNVAAAVCSASFSNLIGILLTPALVALLMAGAGDGPGISLKSVESIALQLLLPFVAGHLARPLIGGFVGRHKKMVGIVDRSSILLVVYTAFSAAVVEGLWSRVSGMTLLLVLLLCCALLAVILCATWGLGRALGFARADAIVLLFCGSKKSLASGVPMAGVLFPPAQIGGILLPLMLFHQIQLIACAIIARRYAAQPDEATVAPAN
>NZ_CP010836.1|WP_044332595.1|2855408_2856641_+|tyrosine-type-recombinase/integrase
MALTDIAIRRARTRDKAYKLYDELGLFLIVAPSGSRLWRMRFKRHGIEKKLSFGSYPDISLRDARKLRDDARDLLAEGKDPVLERQREKLRGEALAENTFTRVAQEYCSKRRRDGDRAWAPSTAARCEYLLSLLDTSIGKMPIHEIEPIDALAAIRKIEKRGKLESARRTLQLAGAVFRYAVATARLKSDPTRDLRGALLTPTVTHYGAVTEAKDVGKLLRAIDAYEGQGMTKWALQLAPHVFVRPGELRHARWEEIDLDIAVWTIPAEKMKMRKPHHVPLSTQSIDILLEIRSITGSNGYVFPSMRSRTRPMSDNTLNAALRRLGYASNEMTAHGFRAMASTLLNESGQWSYDAIERALAHGDTDKVRAAYHRGTHWKERVAMAQWWSNLLDSLRSGATILPFPGVRVG
>NZ_CP010836.1|WP_044332596.1|2856704_2857127_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MFLFDTNVVSALRKPERGGPVFEAWTKMAVGARPFVSAVTIMELEIGILRLQRRDGTQAESLRRWMDKTVMPGFADHILDFDAAVARRCAALHVPDPRSERDAMIAATALVHGLTVVTRNTADFIATGVPLLNPWEDPAQ
>NZ_CP010836.1|WP_044332597.1|2857126_2857390_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MGITSLTSREFNQDAARAKKAALHGPVFITDRGRPAHVLLSIEEYQRLIGKGPTLWDMFADKDDGGDFDFDPPKLNISFRPAEFGGD
>NZ_CP010836.1|WP_044332598.1|2857791_2858715_-|nucleotide-binding-protein
MTGLSERFDRAAIIDALLRQPLIRRDKELAGKFADIGRPRELAPSEVLVEQGDWAKDLYFVLAGEFDAIVHGQVKQTRVAGEAVGELAGLSPSRPRTATLKATKPSFVLAIGYSELQEIVGSDVEFWKAAADAVADQLDHRNREIGAVNETPRVFVISSKEGIEVARELRKNLDSDEIQVYLWDQDTFMISDYPISALEDAIERCDFTIAVAQADDVLITREETHKVPRDNVHFEYGISIGRLGRDRSFLLVQADTKVKLASDLAGLTTLRYQGGDKDKLKRSVAKACDVARERIEFIGVRRDRKAC
>NZ_CP010836.1|WP_052507893.1|2858757_2859549_-|hypothetical-protein
MAAYDPIGPIAALLPDFGASELHRGTGIIRISLPVPLSDGRQPVFILDVGTSGGAISVRETVPAHLPSFCPDRHINHDGTFCLFWRAVDGIEVVNPETARDWLETLVRFLQLQLRAARLRRWPDGRGRSHGAAAFYQHRAEAAAARLGEPFATDIVEGRLGTKRKGGSAEGTAIRVMKEGRRLFSVWERSRRVVNLRQPCLCPAGSGSRPVILRSCGSHAAAAADLAIELNEMAAAEREFWQSMKGSPCCGTMADCPLAGASA

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Crispr_ID: NZ_CP010836_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010836_7

2906171-2906263

Orphan

Consensus_repeat	Method
GCCTAAACTTCCTAAACTTCGCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010836_7

>merge|NZ_CP010836|7|2906171-2906263|CRISPRCasFinder
GCCTAAACTTCCTAAACTTCGCATCCCCTCGCCGGCCCGTAGCGAGGCCTGCCGAAAAACGCGCATACGCCTAAACTTCCTAAACTTCGCTCG

>NZ_CP010836|7|7|2906171-2906263|CRISPRCasFinder
GCCTAAACTTCCTAAACTTCGCATC	CCCTCGCCGGCCCGTAGCGAGGCCTGCCGAAAAACGCGCATAC
GCCTAAACTTCCTAAACTTCGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010836.1\|WP_044332665.1\|2906319_2906892_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_CP010836.1\|WP_044332674.1\|2913570_2913927_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238042
NZ_CP010836.1\|WP_044332649.1\|2893591_2894755_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273385
NZ_CP010836.1\|WP_173426232.1\|2908393_2909746_-\|alginate-export-family-protein	unknown	unknown	gnl\|CDD\|372583
NZ_CP010836.1\|WP_044332654.1\|2897025_2898897_+\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341062
NZ_CP010836.1\|WP_155006406.1\|2911063_2911810_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP010836.1\|WP_155006404.1\|2898918_2900805_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP010836.1\|WP_044336241.1\|2912634_2913438_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NZ_CP010836.1\|WP_044332653.1\|2896310_2896970_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP010836.1\|WP_044332656.1\|2900908_2901250_-\|DUF423-domain-containing-protein	unknown	unknown	gnl\|CDD\|225238
NZ_CP010836.1\|WP_044332662.1\|2903875_2904244_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044332668.1\|2906957_2908337_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP010836.1\|WP_044332677.1\|2914446_2914770_-\|DUF2218-domain-containing-protein	unknown	unknown	gnl\|CDD\|378337
NZ_CP010836.1\|WP_044332658.1\|2901246_2903028_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235131
NZ_CP010836.1\|WP_044332670.1\|2909895_2911038_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340842
NZ_CP010836.1\|WP_052507898.1\|2894747_2896214_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP010836.1\|WP_044332661.1\|2903027_2903459_-\|iron-sulfur-cluster-assembly-scaffold-protein	unknown	unknown	gnl\|CDD\|143480
NZ_CP010836.1\|WP_044332675.1\|2913910_2914414_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176868
NZ_CP010836.1\|WP_044332673.1\|2911806_2912496_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP010836.1\|WP_155006405.1\|2905694_2905955_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010836.1\|WP_044332665.1\|2906319_2906892_-\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	1.4501e-24
NZ_CP010836.1\|WP_044332674.1\|2913570_2913927_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.62184e-10
NZ_CP010836.1\|WP_044332649.1\|2893591_2894755_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273385	TIGR00998, Probable_multidrug_resistance_protein_EmrK, efflux pump membrane protein (multidrug resistance protein A). [Transport and binding proteins, Other].	2.24964e-114
NZ_CP010836.1\|WP_173426232.1\|2908393_2909746_-\|alginate-export-family-protein	gnl\|CDD\|372583	pfam13372, Alginate_exp, Alginate export. This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.	2.01399e-59
NZ_CP010836.1\|WP_044332654.1\|2897025_2898897_+\|M1-family-metallopeptidase	gnl\|CDD\|341062	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain. This model represents the N-terminal catalytic domain of leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is poorly understood while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. Thermodynamic characterization using different biophysical methods shows that structurally distinct inhibitors of the LTA4H occupy different regions of the binding site; while some (RB202, ARM1 and SC57461A) bind to the hydrophobic hydrolase side, both bestatin and captopril are located at the hydrophilic peptidase side. LTB4H overexpression is associated with different pathological conditions and diseases such as cystic fibrosis, coronary heart disease, sepsis, shock, connective tissue disease, and chronic obstructive pulmonary disease. It is also overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well-known red wine polyphenolic compound with cancer chemopreventive activity.	0
NZ_CP010836.1\|WP_155006406.1\|2911063_2911810_-\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	2.2999e-24
NZ_CP010836.1\|WP_155006404.1\|2898918_2900805_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.9402e-50
NZ_CP010836.1\|WP_044336241.1\|2912634_2913438_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.95918e-29
NZ_CP010836.1\|WP_044332653.1\|2896310_2896970_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	6.77257e-18
NZ_CP010836.1\|WP_044332656.1\|2900908_2901250_-\|DUF423-domain-containing-protein	gnl\|CDD\|225238	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown].	8.6695e-19
NZ_CP010836.1\|WP_044332677.1\|2914446_2914770_-\|DUF2218-domain-containing-protein	gnl\|CDD\|378337	pfam09981, DUF2218, Uncharacterized protein conserved in bacteria (DUF2218). This domain, found in various hypothetical bacterial proteins, has no known function.	1.37076e-33
NZ_CP010836.1\|WP_044332658.1\|2901246_2903028_-\|cation:proton-antiporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	9.34623e-145
NZ_CP010836.1\|WP_044332670.1\|2909895_2911038_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	1.04266e-121
NZ_CP010836.1\|WP_052507898.1\|2894747_2896214_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	2.21373e-101
NZ_CP010836.1\|WP_044332661.1\|2903027_2903459_-\|iron-sulfur-cluster-assembly-scaffold-protein	gnl\|CDD\|143480	cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.	7.48507e-25
NZ_CP010836.1\|WP_044332675.1\|2913910_2914414_+\|SRPBCC-family-protein	gnl\|CDD\|176868	cd07826, SRPBCC_CalC_Aha1-like_9, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	6.16216e-50
NZ_CP010836.1\|WP_044332673.1\|2911806_2912496_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	2.09664e-30
NZ_CP010836.1\|WP_044332668.1\|2906957_2908337_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0

>NZ_CP010836.1|WP_155006405.1|2905694_2905955_+|hypothetical-protein
MRDVCVGKGWCGGIVNGEPCHVDYLIPETGSVSAEQFVEWLFQAEGLDPSSEPAKWGKHKDGLREAFVRHMGADVVDASALKWDVS
>NZ_CP010836.1|WP_044332662.1|2903875_2904244_+|hypothetical-protein
MSDKPVAERLQVKHGRRLAVIGAPPALDAAIGTDAPRAAPSEAEVVLLATPDRATFLAQVPRTAAAIAPAAILWVAYPKLTSPLAADLNRDTIRALALAHGLDTVSQIAVDADWSAMRLKRV
>NZ_CP010836.1|WP_044332661.1|2903027_2903459_-|iron-sulfur-cluster-assembly-scaffold-protein
MNAPLYNTQILRLAASIPYQERLAAPMASVEKRSPVCGSRVTVDVETDGEGRVSAVGMLVRACALGQASASLMGAHVVGRSAEELAAARDALAAWLAGERDAPPEWPGLELFAPALPHRGRHASIRLAFEAAAEAAAQAGGRG
>NZ_CP010836.1|WP_044332658.1|2901246_2903028_-|cation:proton-antiporter
MEEHSGMSLLHDGVPLLGFALVFVLIFRRLGIGATLGFLVAGALVGPQVLGLVGDAEGKMGIAELGIALLLFLVGLELSPSRLWRMRREIFGLGFLQVTLCGVAVAGIVWFATGSSLGAALALGLPLALSSTAQVLPMLQSAGRLRTPFGERAFAILLFQDLSIVPLITIVAALSRNPADQNGPPGWLLAVYTVVAIVGLILAGRYLLRPLFKLIGNLGEREMFVFAGLFAVIASAAIMEALGLSAALGAFIAGVMLADSPYRHELEADVAPFRAILLGLFFLAVGMTLNLHAIAERPFFVAGMAIALIATKAAIIMALGLLFGMKPRSAFALGVLLSQGGEFGFVLFAQAQAAFLVESEAASVFGAIVTLSMATTPFLMMATKRLRTEPEASAEGLDGPQQDGSNAVVVGYGRFGQTVAQMLIGQGIPVTIVDTDVEMIQVAGEFGMKVYYGDGTRLDILRQAGAEDAELLLFCQDGDGLDTEKLEAIHHSFPKATIFVRAYDRRSVMKMKGAPIAGAVREVLESAMVMARRAMAAVGVDMQEADKTEAEYRRRDFERLKLQRESGDLYAGRDGIFTPAGQAAAAAADLEAK
>NZ_CP010836.1|WP_044332656.1|2900908_2901250_-|DUF423-domain-containing-protein
MKNLTILAALSGAIAVAAGAFGAHGAASAQAAEWLRTGGQYQLIHAVAALVAVRMAMRGPAWCFVAGGAIFAATLYLMALGAPRWLGAVTPLGGLTLIGGWLWFAISAARAHE
>NZ_CP010836.1|WP_155006404.1|2898918_2900805_-|diguanylate-cyclase
MANRAAGISLGALAAALVLAGSPAQAMCSIGSPPIVADFQRQVNADPARALAAITAQLARKDLGRIDRAWLYAAQALAYSTLERSEDEVVAANAGLALAPSPRDAPHMELLAQLAFGQSDPAALKPIADRIKAARRFVTPNSIEDICSRAVIGSLSREPVAEIRELGAAYRLAIQQGMAEQRALLAIDVAGVLMKAGDSAEALALIDEGERWARANNLTFLTASTAFRRAMTHTGMKDFVSSIGGFDTAYRLSLSLGNRNFAAFAVMSKCQSLLSLKRFGEAEGACNEAERLFGDDQMARPRLMAYRSRIAYGLKRYPEAVALTTAILEAPASRSAIKFPLYQTRGMAQAGLGNFREAYADMKRYADMYRDDIEAKKSREAATLASQVEIERQVDRNKALEREVVFEQERARYERQRLILLGGVAGALALALALFLWMGRRHRRALEALASSDGLTGLPNRRHATEQGSVALARAADARSPLSLGLIDIDYFKRINDAEGHAAGDAALRDLSAILKSAVRRSDVIGRWGGEEFLLMLPGLSAAETAEVLGRIRAEALRLERPLRFSAGIAAAAAGERDLEAVVARADAALYEAKRSGRSRTVIAADASPSPDRRGEPEGAPQEAGAPA
>NZ_CP010836.1|WP_044332654.1|2897025_2898897_+|M1-family-metallopeptidase
MRILLASAAAALMATTSALAQQAPAPILTTPEARDVWTHAEPEVARVTHVDLDLRADFAAKTLSGTAALDVLAAKGAKQIVLDVDDLAITAVTDGAGKPLPFAVGADSPDLGAALTIQLKGARRIVIAYATRPDASALQWLAPELTAGKAKPYLFSQGQPINNRSWIPTQDSPGIRQTWTAKLTVPAGLVAVMSGERIDGAQGQPAANGERSYRFRMDKPVPPYLIALAVGDLAFKATGPRSGVWTEPSQLDAAASEVADVEKMIDAAEALYGPYRWGRYDMLVLPPSFPYGGMENPTLTFLTPTIITGDRSNTDVVAHELAHSWSGNLVTNATWSDNWLNEGFTTYFENRIMEAVYGAERAAMYADLDWDGLVSDIKDAGGDAAPTTRLHGEPGETAGQLDYFKGSTFLRTIEAAVGRARWDAYLRAYFDRHAFQPQTTAGFLADLRKNLIRGDAALEAKLQLDRWAYQPGLPDNAVHVTSATLAQVDAKLAAVKAGGPVSAVQPQGWSTQQWLRFLNGLPRAQSPARLRELDETLGLSASSNAYVRSAWAELAIANRYDPALPSIRGLVTSVGRGLLIRPVYEGLMKQGDWGQPIARAYFEAARGGYHPNTAAQVAKIVQQ
>NZ_CP010836.1|WP_044332653.1|2896310_2896970_+|TetR/AcrR-family-transcriptional-regulator
MESDIESPPLGKREANKLDRRQAIIDAARHSFLEDGYAATSMSGLLKTLGGSKATLWSYFRSKEELFAAVIEDLTAAFREELEGSLLGSSGIEATLWNFCSSFMRKMEHPDTAALRRLIIGESARFPELGQIFYDRAVIHVEHAMTAYVASQIAAGRLHDEDPKKMAQFLLGLCAARHNQRLWGVVAEQDAEVEADSQRFVGYFLRLFRTSEPPAPLAE
>NZ_CP010836.1|WP_052507898.1|2894747_2896214_-|efflux-transporter-outer-membrane-subunit
MVLHRAIRPAAPLAILLLSACATVPKMGPAPVVAPPSAYASGTSLAGMPQAEWPAMDWWHAYGDPQLDALIAEALDGAPDLAAATARVRQAEAYAQQAGAARLPTLDATASSGVAKQSYNNGIPAAFVPKGWNDTGRVEADLGFDLDLWGKNKASYAAARSQAEAARLDLAQSTLTLSTNVADAYADLAQLYAERAVQETALSIRQQTQQLTADRVAAGLDTQAELKQAQSAVPSARADLAATDERIALTRNRIAALLGKGPDRGLAIVAPTAVIPARGVPADVTTDLIGRRPDVVAARTRVEAEASLIKVARADFYPSVSLSAVFGFQSLGIDNLFKSGSSFGNATPAVSLPIFRGGALQGAYRQARANYDEAVASYDRTVTDAYHAVADAVTSQRALAVRLAESRLALADAQAAYDVARQRYEGGLSRFTDVLTAQDRALQSQRTVADLEARAFTLDVALVRALGGGFSAPRAATAPQATKDKNHG
>NZ_CP010836.1|WP_044332649.1|2893591_2894755_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MADADPTNRAFNASASDAPTDSKAPTKLRKTLLTGIAAAVLVAGAGYGGWYALVGSHYVETENAYVGADTAQVTPMVSGQAIAVLVSDTQSVKRGDVLVRLDDRDAQIALATAEADLAKARRQFGQSEATSDALSAQVQARAADIASARAQLVSAEAALAKAQVDFNRRQKLAPNGAVSGDELTSATNSLTSARASVAQARAAVAQANSQRGAAAGNLAANQALIQGTNVTNAPDILSAEARLRQAKLDLERTVIRAPVDGVVASRTIQVGQRVAPGATIMQIVPVGQVYVDANFKEGQLAKVKPGQSVTLSSDLYGSGVEYHGRVVGFSGGTGAAFALIPAQNATGNWIKVVQRLPVRVALNPRELAEHPLRVGLSMRAEIDTSTR
>NZ_CP010836.1|WP_044332665.1|2906319_2906892_-|CvpA-family-protein
MNLTGLDIIVLLAIGGAAILGFMRGFVTEVLALLAWLLVVLALKLFHTPLSQALAGVVGTAQGGAVLAFAMLAGATYFGGRMIANAIGSRTRDGFLGPIDRALGFGFGALKGLVLVSIVFLLMVLVFDTVGGGPAQRPRWITSSSTYPLLDRTSAGIAEFVDRRRRGEPVFGGPADADEDAGNASVGRRR
>NZ_CP010836.1|WP_044332668.1|2906957_2908337_-|DNA-repair-protein-RadA
MAKPQKRYVCQACGSVASRWAGQCADCGEWNTLVQEVAANATPFQARHNLQSGGRTIQLSGLNSEIALPERMRSGIAELDRALGGGFVEGSATLIGGDPGIGKSTLLLQAAAKIALRGLSVAYVSGEEAADQVRLRARRLGLGDAPVQLAAATSVRDILTTLGEGSAPDLLIIDSIQTMHSDLIEGAAGTVSQVRASSGELIRFAKERGTALVLVGHVTKDGSIAGPRVLEHMVDTVLAFEGERSHQYRILRATKNRFGGTDEIGVFAMESEGLSEVANPSSLFLTNRDESVTGTIVFPALEGTRPVLVEVQALVVRLASGATPRRAVVGWDSGRLAMVLAVLEARCGLSFSTCEVYLNIAGGYRVQDPAADMAVAAALVSALAERPMAADAVAFGEIALSGEVRPVAHGPLRCREAAKLGFGRAMAPQGQAGAKPDGGGLSIAGFRTLGAFVDHLLGR
>NZ_CP010836.1|WP_173426232.1|2908393_2909746_-|alginate-export-family-protein
MRREMLGLVALVMPVGAAAQSGPAAPARAAEDGLDLSATVRLRYEAIDASPVAGSDSSGALFNVRSTLLARYQSGPVALVGELWDSRAYGDAGRPITTGEVNAAELVQAYAAVALPLAPGVKAVVRGGRFMLNIGSRRLVAADDYRNTTNGYTGVEAELTGKAGLHANLLYVLPQQRRPDDAATLDRNGVAPDREGFDLVLWGGTVAQAHAIGPVMVEASFYHLGERDMPGRPTRNRSLNTYGGRLLRDPAKGRVDAEVEGFYQSGRVRASTAPAAAVLPVSAWFVHGDVGYTLAGAWKPRLSVEVDRASGDRPGGSYGRFDTLFGMRRADLAPSGIYNAVGRANIAAAGARAEVTPSARVDAFASYHALWLAERRDAFSTTGVRDASGQAGAFAGHQLDARLRWWVRPGRLRFEADGVVLAKGSFLEAAPNAPGGGTTLYGSLNLMASF
>NZ_CP010836.1|WP_044332670.1|2909895_2911038_+|glycosyltransferase-family-1-protein
MHPSDLRVALFSGNYNYVRDGANQALNLLVGHLLARGVQVRVYSPTVETPAFAPTGDLVSIPSWPLPGERGEFRFATRLPRSVRDDIAAFAPNLVHVSSPEFVGHAAIRFARAHGLPVLASLHTRFETYPRYYHLGFLEPLVVHLSKRFYNRVDTVMVPGQSMCDLLREWGVTTPIGIWSRGVDHAAFNPQRRSLEWRRDLGIADDEFAVGFLGRLVLEKGLDIFAGVVAALEARGVKHRVLVVGDGPARDWFAERVPGAAFAGFQRGEDLARAVASMDVLFNPSVTETFGNVTLEAMACGVPVVAARATGAVDLIEDGVNGFLVPPREIAGYTDAIARLAQEPELAASAGASGHAKALGYEWDRINQAVLEAYLGLVRG
>NZ_CP010836.1|WP_155006406.1|2911063_2911810_-|siderophore-interacting-protein
MMLAAGSPERATKEPGRFSKAVMRLWMKPATIVANEQLADRFHLITLEGPALADVAWLPGQKVQIAMGSAFVARTYTPVEWNPSTGRMCILGYAHGDGPGSGWVRTVAPGDRCDIFGPRASLDLSCLPGPLLVVGDETSIGLVYAAIHQDPTRAVSACLEVEDVESARRVAAHLGLDPLALVVRKGGNGHIFAMEAGLSEAAAAGASIVLTGNARTIQRLRQVLRSQPFPAARLLAKAYWAPGKTGLD
>NZ_CP010836.1|WP_044332673.1|2911806_2912496_-|class-I-SAM-dependent-methyltransferase
MNTLQTSRVADLLNDLHRDAENSDREHFEAMMTIFNGPGGAEQMISDILAGERADYSTVYRRYADNFLAVSPEYGRFLYAIARARGATRIVEFGTSMGISTIYLAAALRDNGGGHLIGSEMEPGKVARARANLDAAGLGDLVEIRAGDALETLKDVGGAVDMVLVDGAFSLYLPVLKLVEQRLKPGAVILGENAFEPEYQAYVRDPANGYLSFSLPDAGRGNEFSVRVA
>NZ_CP010836.1|WP_044336241.1|2912634_2913438_+|helix-turn-helix-transcriptional-regulator
MPILNAIDGFEWIDPDDVPRPIVAFGAQMSDADGFELEPHRHRKGQMLLVQRGALSCEVEGGLWIVPPRSAIWIPGGALHAIRASGALEGYDAFVDSDAAARLPRACCAVAVTPLLRELLARAAHLPYFYEDEGANARLVAVLLDELAIAPVEDLHLPMPSDPRLRKVVDQMMASPADRGSLKIWAHRAGMGERTLERLIHRQTGMSFGRWRQQLGVVLAVKWLAGGASIQQVAGELGYESVPSFVTMFRKALGTSPGRYMAERHSG
>NZ_CP010836.1|WP_044332674.1|2913570_2913927_+|winged-helix-turn-helix-transcriptional-regulator
MVQHPSPALDLSFAALSDATRRGIIDQLGRGDASITVLADRFQMTLTGMKKHVQVLERAGLVVTQKVGRVRTCTLGTRGLAAEAAWIEAHRRLFEDRFSALDEILDELKQEEQDDSAR
>NZ_CP010836.1|WP_044332675.1|2913910_2914414_+|SRPBCC-family-protein
MTQQGDTAAATPNRTSVERRGTRELVVTRVFDAPPALVYRAWSESDLFRRWWMPRSAVGVSLVACDLDMRTGGKYRLEFSAGGPDTMAFYGKYLEVVPNERIVWTNDEGEEGAVTTVTFAEQDGKTLLTFHEAYPTAEALEEALQGSAAALPEQLEQLDELLSATDA
>NZ_CP010836.1|WP_044332677.1|2914446_2914770_-|DUF2218-domain-containing-protein
MTVTTKSASALVPTESASKYLQQLCKHWSHNLQVEFTPENGTVIFPKDARGMAFPGDAVVTFNVAETGLDVRIDASSDEQLEGLKGAVARHLDRFAFREAPLGFDWR

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Crispr_ID: NZ_CP010836_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010836_8

4041023-4041112

Orphan

Consensus_repeat	Method
AACCCTAAACTTCGTAAACTTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010836_8

>merge|NZ_CP010836|8|4041023-4041112|CRISPRCasFinder
AACCCTAAACTTCGTAAACTTTGCCCGGGTGCGGCGCCGGCGCGCGGCGTCCTGCGCACCCCGATCAACCCTAAACTTCGTAAACTTCGC

>NZ_CP010836|8|8|4041023-4041112|CRISPRCasFinder
AACCCTAAACTTCGTAAACTTTGC	CCGGGTGCGGCGCCGGCGCGCGGCGTCCTGCGCACCCCGATC
AACCCTAAACTTCGTAAACTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010836.1\|WP_044334124.1\|4038474_4039401_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|181919
NZ_CP010836.1\|WP_044334131.1\|4042720_4043020_+\|DUF1153-domain-containing-protein	unknown	unknown	gnl\|CDD\|369009
NZ_CP010836.1\|WP_044336585.1\|4043213_4043468_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP010836.1\|WP_044336589.1\|4044827_4046015_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP010836.1\|WP_044334139.1\|4050476_4050947_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|226389
NZ_CP010836.1\|WP_077228685.1\|4028653_4029601_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP010836.1\|WP_044334135.1\|4046028_4049175_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP010836.1\|WP_173426245.1\|4040516_4040876_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044334114.1\|4029607_4030525_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|237667
NZ_CP010836.1\|WP_044336587.1\|4044335_4044596_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP010836.1\|WP_044334121.1\|4036891_4037803_-\|Ku-protein	unknown	unknown	gnl\|CDD\|238408
NZ_CP010836.1\|WP_052508001.1\|4042391_4042616_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010836.1\|WP_044334126.1\|4039397_4040192_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP010836.1\|WP_044334115.1\|4030936_4031824_-\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP010836.1\|WP_044334122.1\|4037899_4038478_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NZ_CP010836.1\|WP_044334129.1\|4041127_4042237_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP010836.1\|WP_044334137.1\|4049263_4050469_+\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|377281
NZ_CP010836.1\|WP_044334119.1\|4034457_4036890_-\|DNA-ligase-D	unknown	unknown	gnl\|CDD\|235658
NZ_CP010836.1\|WP_044334117.1\|4031823_4034304_-\|circularly-permuted-type-2-ATP-grasp-protein	unknown	unknown	gnl\|CDD\|379601
NZ_CP010836.1\|WP_044334133.1\|4043525_4044251_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225516

Protein	Function_ID	Function_description	E-value
NZ_CP010836.1\|WP_044334124.1\|4038474_4039401_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|181919	PRK09509, fieF, CDF family cation-efflux pump FieF.	2.4539e-90
NZ_CP010836.1\|WP_044334131.1\|4042720_4043020_+\|DUF1153-domain-containing-protein	gnl\|CDD\|369009	pfam06627, DUF1153, Protein of unknown function (DUF1153). This family consists of several short, hypothetical bacterial proteins of unknown function.	9.01789e-52
NZ_CP010836.1\|WP_044336585.1\|4043213_4043468_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	2.63919e-11
NZ_CP010836.1\|WP_044336589.1\|4044827_4046015_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.51053e-47
NZ_CP010836.1\|WP_044334139.1\|4050476_4050947_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|226389	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only].	1.7027e-40
NZ_CP010836.1\|WP_077228685.1\|4028653_4029601_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.33616e-34
NZ_CP010836.1\|WP_044334135.1\|4046028_4049175_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP010836.1\|WP_044334114.1\|4029607_4030525_-\|J-domain-containing-protein	gnl\|CDD\|237667	PRK14299, PRK14299, chaperone protein DnaJ; Provisional.	7.95388e-53
NZ_CP010836.1\|WP_044336587.1\|4044335_4044596_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	3.34541e-13
NZ_CP010836.1\|WP_044334121.1\|4036891_4037803_-\|Ku-protein	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	2.13713e-105
NZ_CP010836.1\|WP_044334117.1\|4031823_4034304_-\|circularly-permuted-type-2-ATP-grasp-protein	gnl\|CDD\|379601	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2. Circularly permuted ATP-grasp prototyped by Roseiflexus RoseRS_2616 that is associated in gene neighborhoods with a GCS2-like COOH-NH2 ligase, alpha/beta hydrolase fold peptidase, GAT-II -like amidohydrolase, and M20 peptidase. Members of this family are predicted to be involved in the biosynthesis of small peptides.	3.17396e-170
NZ_CP010836.1\|WP_044334115.1\|4030936_4031824_-\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	3.57164e-38
NZ_CP010836.1\|WP_044334122.1\|4037899_4038478_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	2.73944e-112
NZ_CP010836.1\|WP_044334129.1\|4041127_4042237_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP010836.1\|WP_044334137.1\|4049263_4050469_+\|DUF445-domain-containing-protein	gnl\|CDD\|377281	pfam04286, DUF445, Protein of unknown function (DUF445). Predicted to be a membrane protein.	7.57277e-123
NZ_CP010836.1\|WP_044334119.1\|4034457_4036890_-\|DNA-ligase-D	gnl\|CDD\|235658	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP010836.1\|WP_044334126.1\|4039397_4040192_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	5.45446e-66
NZ_CP010836.1\|WP_044334133.1\|4043525_4044251_-\|SIMPL-domain-containing-protein	gnl\|CDD\|225516	COG2968, COG2968, Uncharacterized conserved protein [Function unknown].	2.63258e-54

>NZ_CP010836.1|WP_173426245.1|4040516_4040876_-|hypothetical-protein
MTDPAKPWDGKVVRTWLERRIAAARLDQAAADRRGYEARDEFDLAAAEEWACRALASGDDADAQAAFAARIKALIGQDEYRATGINDDVRFERHVRSHLRKVAKMTKANEGFEKTLRYQ
>NZ_CP010836.1|WP_044334126.1|4039397_4040192_+|PhzF-family-phenazine-biosynthesis-protein
MKLVFAQIDAFASRPFTGNPAAVIPLRSWLDDAVLQAIAEENNVAETAFFLPDESGTADFELRWFTPTVEVALCGHATLASGHHVLSADPSRDTVTFATRQSGVLEVRRDGAGYAVSLPAYAPDPVALPDVLAALGVESAVATLRHPRGYDLTVLDSAEAVRALTPDFRALAALGDTLNIVTAPGTDTDVISRVFAPAAGIDEDPVTGSAHAVLTPYWAARLGRDRFTAYQASRRGGHLTCTLAGDRAVLGGQCVTVIEGEMTL
>NZ_CP010836.1|WP_044334124.1|4038474_4039401_+|cation-diffusion-facilitator-family-transporter
MSPARPNFARRAALASVATAIFLGTLKSWAAWATGSVAVLASLADSLLDLVASLVTLGGVHWAAQPADAKHRFGHGKAEALAALFQVAMIAVSAFAILLRAVQRLVVAQGSSHAEAGIGVSVIAILATLALTAYQRAAIRRTGSIAIGADHIHYQSDLFLNAAVIAALALDQYLGWSGADALFGIGIALWLLFGAWRASVAAIDQLMDKEWPEAKRARFVEVAARHPELIGLHDLRTRTSGARDFVQFHLWMDPNMTVAAAHAVLDRLEHALEAEFPGTEILIHVDPEGQVDQPDNPLAETDLLKDAK
>NZ_CP010836.1|WP_044334122.1|4037899_4038478_+|pyridoxamine-5'-phosphate-oxidase
MSTDPFALFDAWYAEARTTEINDSNAMALATVDAAGQPSVRMVLLKGHGPDGFVFYTNREGRKAADLAAMPKAALLFHWKSVRRQIRIEGAVSHVSDAESDAYFASRSRDSQLGAWASDQSRPLPDRATFEARYAEMRARFDGGPVPRPPHWGGYRVAPERLEFWQDREHRLHERRVFTRAGDGWREGLLYP
>NZ_CP010836.1|WP_044334121.1|4036891_4037803_-|Ku-protein
MAARAYWQGQIRLALVSIPVEIYTATKSGAQVSFHQIHEPSGKRIKYEKVAPGIGAVDVDEIVKGYEFEKGEYVLLEQDEIDAVKLESKKTLELTQFVDADEIDVLYYEKPYFVVPADDLAEEAFIVLREALRRTRKVGLGQLAMRGREYVVSLKPCGRGMILETLRYADEVQKAQGYFRDIPDDAPDPELLDLAETLIGKKASKFDPAGFHDRYVDALKDLIERKKKAKGAKIIEEEAEGAPSRGSNVVDLMAALKKSLEKPGAKGAAAEEKPKAAAKKAPAKTGPAEKAPAKRAPAARKRA
>NZ_CP010836.1|WP_044334119.1|4034457_4036890_-|DNA-ligase-D
MADTPLARYNAKRDFGLTEEPEGLVAATGGNRFIVQKHDATRLHWDFRLEVDGVLKSWAVTRGPSLDPDEKRLAVRTEDHPLSYADFEGTIPKGQYGGGTVMLWDDGVWEPVKGKSAKDLDKGHLHFRLDGHRMKGEWLLIRLKPRGKEKAENWLLRKLDDGYAGATDALVETGLTSVATGRTMQEIAEGAAVVATSGPPPTPPASGRGAKPPPFQPVQLATLVDSVPTGSDWLHEVKYDGYRALLATGKAAKVYTRSGLDWTEKFPGIAEAAAGLPPGALIDGEIVAFKEGRPDFSTLQDAISNGGAGLTLFAFDLLQDAGEDLTALGQLARKERLRALLAGADARIQFSEHIVGAGEQLFETMCREGYEGIVSKRAAAPYRGARTKSWLKVKCTRRQEFVIIGWMPSTAKGRGFRSLLLGVNGPEGLVYAGKVGTGFSTDTLHALRETLDGIATDKAPLSVPRAESRGAHWVKPELVAEIAFAEFTAEKVVRHASFLGLRGDKKPAEVVAETPVPLPEPVATSHIKISSRDRVIYPEAGLTKGQLADYYAAVAPIALRWLGNRPISLVRCPQGRAKQCFFQKHDAGSFGDDVHHVDVREKDGSTEPYLYIDSLDGMLACVQMGTIEFHGWGSLVADIEKPDRLVFDLDPDEGLDFEAVKKAAADLKDHLADMGLTSWPLLSGGKGVHVVVPLVPRVEWPEVRSFAERFARALAQAEPDRFTANLKKASRTGKIFIDYLRNQRGATAVLPYVARAREGAPVAAPVTWTELRTIDSAKLYSIRDAATLIERAQSRALQGWGEAAQALPDV
>NZ_CP010836.1|WP_044334117.1|4031823_4034304_-|circularly-permuted-type-2-ATP-grasp-protein
MASRAATGLFDPGTIAGRWIADYCSHAPGGDVLCDTGAGPAWTALFEELASVAGDSLEHIRERAQRNADDIGTGFRIAGEGEERPWPLSPVPLLIEKDEWDGIAAGIAQRAELMETVLRDLYGPSRLVADGHIPATLVTGSPFFLRPLTHLVPPGGYHLQFVAADLCRGPSGEWRVLADDLRAPAGAGYALENRLALARTLDGLQGRLNIERHAPFFAAFREGLAASCRRAEPRMALLTPGRLNASYAEQAHLARYLGFLLVEGADLAVLDDRLYVRTIAGLKRVDALWRRLDPRLLDPLALDSHSTIGVPGLVDAMAAGNVVIANAPGAGALEAPAFAAFLPQLAQALTGEALTLPNIATWWCGQERERAHVAANLDSLLIAPAFGVPPLGLPEGKPVLGATLDAEQRAALLADMERRPQDYVGQEVVRLSTMPVVADDALASRPFTLRVFAARGGDGRWTVLPGGFARIGEHPDVRAAVMGNGVWSADVCVHGAEPVAPVSLLPSGDSTQLRRNPGTLPSRVADNLFWLGRYLERGEALLGVLRVLLGHSISADTGAALSGDTVARLARMVVQGGSAPEPKALKRADLTWLVRTALEDETSYSVRAINRQARLIGEVSRDRLSADMIRLLDAPFPQRGVLLDKAGSLQRRYSALAGLAAEHMARTDAWRFHDIGRRIERASAGVRFLRAFGCPEATSDDLSTLLDLADSQISYRQRYLTGLARIPVIDLVMLDPGNPRSVAFQVAAISGHLNKLPVLSDDGLAEVQQEQARQLAAILVTANAKRIDDALLSGIETRLAELSESIARRYFLQGAEPLRAAGLVLA
>NZ_CP010836.1|WP_044334115.1|4030936_4031824_-|transglutaminase-family-protein
MLYRIRHVTRFEYARPVAFARNNLRLRPILWSGQSVEEYRLTIEPQGRTYPARAEAGLANVMRLVVEAPARTLTIESEALVRVDRPIPIPQASDPTLAQVAAWARESRDSSPVSPASYLFPSPLIPLDAQIAAWCAEDLDPARGVLDAAFALATRIQREFAFDTTATLVDTPPHEAFLKRGGVCQDFAQIMLSGLRAAGLPAAYASGYLRTLPPPGQPRLVGADATHAWVLVWGGPDLGWVGVDPTNGIWMANDHVIVAIGRDYGDVAPIDGIVLGSGAQEMDVSVDVEPLVEGG
>NZ_CP010836.1|WP_044334114.1|4029607_4030525_-|J-domain-containing-protein
MADPYTILGVERGASEAEIKKAYRKLAKELHPDKNKDNPKATARFSEVTQAYDLLTDADKRARFDRGEIDGDGNPAAPFGYGGGQQGGFQPSGFGGGDADMSDIFEGLFGGAGRRGGGGFSGGFGGFGRRPAPKGANVAYRLAVAFEDAAKLAPQRITLRDGKTIDLKLPAGVETGTQMRLGGKGEEGPGGPGDAIVTIEVQPHRFYERVGDDIRVDLPVTLTEAVLGGQVRVPTPDGPVMLTVPKGSSSGKVLRLKGRAFHRKAGGRGDLLVTLMVELPADDAALTAFAQGWEDKGNPRARMGV
>NZ_CP010836.1|WP_077228685.1|4028653_4029601_-|YihY/virulence-factor-BrkB-family-protein
MNTGKSEEATAAPAKPGIGARIRALLGKAGATPRFFAVIGRVAVGTFNEGFTYAGNLAYLSLVTLFPFVIVAAAIAQLVGRNAEGLRTLEAFLQTVPPDVADVLRKPATDVLQARTGNLLWFGAIVGLWTTAGFIETLRGILRQAYRVQSSTPFWRDRLGSIGMIIASVILAMAAFSVQVILTGIEQFLYRLLPWASNAQAIVSFTKLAPAVVLFGALYMLFYSLTPGKYRRAKCPKWPGALFTTIWWMSVTAALPWVLSTLGSYDLTYGSLAGVMIALIFFFLVGLGLVVGAELNAALAETPSDGLEESAKQEV
>NZ_CP010836.1|WP_044334129.1|4041127_4042237_-|tRNA-2-thiouridine(34)-synthase-MnmA
MTPADFQLEPPLSARRIVVAMSGGVDSSVVAALAAATGAETIGVTLQLYDHGEAVGRAGSCCAGRDIRDARAVCDRLGIAHYVFDHESSFRETVIDDFADEYLAGRTPIPCVKCNMGPKFTDLFKLARDLGADCLATGHYVRRVMGAAGAELHRAVDPARDQSYFLFATTRDQLDFLRFPLGGMEKARVRALAAELGLGVAGKPDSQDICFVPDGDYASLVKKLRPEAENGGEIVDEAGRVLGMHRGLIHFTVGQRRGLEIGGTPEPLYVIRLDPASRQVVVGPRRALAVQAARIENINWLGAGFAGAVTAKVRSLAKPVPARLEGDRVVFDSPEYGVAPGQAAVLYAGDRVLGGGWIAETERAEMATA
>NZ_CP010836.1|WP_052508001.1|4042391_4042616_+|hypothetical-protein
MRVDLSFARGDRDGAATALPTELAVLLAGVVARQAASPTARAQALLSRAMPVDAALAPVHGAFHRVVAAALKRW
>NZ_CP010836.1|WP_044334131.1|4042720_4043020_+|DUF1153-domain-containing-protein
MIENQKIRPAKVIGPLGEPLTLDTLPPPDTTRWVVRRKAEVVAAVNGGLLSVDEVCERYGLTVEEFAGWQRAIDRSGMPGLRVTRIQHYRSLYERQQKY
>NZ_CP010836.1|WP_044336585.1|4043213_4043468_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGLIVWLVIGGVVGWLASIIMRTDGQQGIFLNIIVGIVGAFVGGLLFGGSINNSSITVSTFLVSLVGAIILLAIVNLVRRGSVR
>NZ_CP010836.1|WP_044334133.1|4043525_4044251_-|SIMPL-domain-containing-protein
MFRTALIATAAVAAFHAVPAAAQGLPAAATILAEGTLLEISAEGTSTRVPDLALIQAGVTTLQPSAAEAMRENASRMGAVLAALKGAGIAARDIQTSSIALSPQYRYVENQPPVLTGYQATNQVSVRFRDIARSGRILDLLVAQGANNLQGPTLVIEKPQAALDEARVAAIATARARAELYAKAAGLSVARIVSIAEAGASPQPMPMPAFTARSKEAASDTQVAAGENELTVAVTVRFLLK
>NZ_CP010836.1|WP_044336587.1|4044335_4044596_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MPTGIIGWLLIGLVAGALGKLLMPGRDPGGIIVTILLGIAGALLAFYLTPLLGLDVRDSTWQAYAAATAGSVVLLALYRMVMVRRT
>NZ_CP010836.1|WP_044336589.1|4044827_4046015_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKYEGRMLGRQERLEFTGEETGVRSRRWIWIGALVVVILAAAAFFLLNGSSDDAAKGAAGAPGQSQIPTVTVAVPGRKTVQTVITGTGSLAARREMPVGVAGEGGMVTRVLVEPGSWVGAGQVLATVDRSVQAQTAESLAASVRVAQADARLAQAELDRAQKLVANGFISKADIDRKTAARDQALARVRVAQAQLSETDARNRRLDIRAPAAGLVLTRGVEPGQIVSSGSGVLFRLAMGGQMELRTQLAEIDLQRLRAGAPAEVTPTGTTQTFKGEVWQVSPIIDPQTRQGIARIALAYDAALRPGGFASARIVAGATQAVTLPQSAIQSDAQGNFVYTLNAKNEAVRVPVTLGEVSEAGVAIASGLAGNERVVLTAGAFLNPGQKVIPNLQPQK
>NZ_CP010836.1|WP_044334135.1|4046028_4049175_+|efflux-RND-transporter-permease-subunit
MSFRNISAWCIRNPVPPIVLFIALTVAGLVSFMRMDVNNDPDIDFPIVWVSISQPGAAPSELETQITQKVEAAVRSLQGIDQIESTVSEGNAQTVIQLAIGTPIDRAVTDVRDAISQIRGDLPEGILEPQVGRVDSASQNEVASFTALATDMTIEDLSWYVDNTVAKEILSIPGTSGVSRNGGVNREIRVIVDPAKLQALGITASQVNQQLRAVNLNAAGGKAEISGSEQSVRVLGNARNAYDLGQTQIALSGGRTVRLADIAQVKDLYAEQTSFARFNGQQVLTFDISRAKGASDVSIYHAAEEKLAELEKRYPKIQFKLLSNTTSKYAEAQYHSAIEALLEGAALAVLIVFLFLRDWRATIISALAIPLSAIPSFWFMDLMGFTLNQMTLLALSLVAGVLVDDAIVEIENIVRHMRMGKSAYQASIDAADEIGLAVLATTMSIVAVFLPVGLMPGISGQFFKNFGLTVVAAVLMSLAVARMLTPMIAAYFLKAQGHAEHGGGWLMDGYIRVLKWTMLHRWSAIVGSAVALGLTVWMFMILPMTFQPTQDQDSVQANIEMVPGTTLEQTDRVVTHVAQILREQPIVRDVYARTFVGNGRVTALLADKRDMTSDQFQKSMDKTLAAIPDARVTFRSQGGWGGGGRDISIVLGGEDPELLTKTANQLVGEMAKLNTLVAPRVSGDLNRPEIVIKPRLDLAASMGVTTQALSQAIRIATLGDIDQNSAKFSLSDRQIPIRVAIDEDSRARLSTIQNLAVATSTGGSVPLRVVADISFGAGPTRIQRLNQQRRLVVGADLAVDPKTGKPFVSGIAMQQIADLPLMKNLPMGVSELKVGSAKWQAEMIQNFIIAVIAGVFLVFAVLVLLYRRFVSPLVNMGSLMLAPLGGLLALWATGNPVSLPVYIGLLMLLGIVAKNSILLVDFALEEMEKGVPKVAAIIDAGHKRAQPIVMTTVAMVAGMVPTAMGAGDASWRSPMGITVIGGLILSTVLTLLIVPAAFSLALGVEQWLGPKLSRRLLTYRPGDDGRLVAPVAGTIEHKPGSDAPHPAE
>NZ_CP010836.1|WP_044334137.1|4049263_4050469_+|DUF445-domain-containing-protein
MRLVATGLLVAMAATFLAARHFAPLHPAIGFVRAFAEAAMVGGLADWFAVTALFRHPLGLPIPHTAIIPRNKDRIAGTLAAFLRDNFLTAHVVARRMRGVDVARAAGRWLANPPEANGRIGSGAARLAADMLEALDQERLGGMAKGAIAARLRAIEIAPLLGQALTAAMANDRHLPLLDGMIRWASRTLAANEHLIRDIVHSRAGSVMRWTGLDETLANKIIEGLHKLITEMADDPAHPLRIRAEEGLAQFAQDLQAKPELRAKVEGFKVEMLENQAFQHWIDGLWESSRAALLRLARDPERALGGKLGEALRQFGATLQDDARLADTINRFARRAAVGAASDYGDGIVRLVSDTIRGWDARTVTGRLENAVGRDLQYIRVNGTLVGGLVGVAIHAVDTLL
>NZ_CP010836.1|WP_044334139.1|4050476_4050947_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MPKTLVDIAEMMKDIDFAMLSTHSEGGTIAARPMSNNRDVAYDGDNWFFTSADTRLVADIEANPVVGLGFQGKAGLLGMKPVFVSIEGHAELIRDKAQFEAHWNPDLERWFEQGVDTPGLTLIHVHGDRAHYWDGEDQGDLVLAGANPDTVATATG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP010836_3	3.1\|2255724\|43\|NZ_CP010836\|CRISPRCasFinder	2255724-2255766	43	NZ_CP010836.1	693753-693795	2	0.953
NZ_CP010836_4	4.1\|2514392\|43\|NZ_CP010836\|CRISPRCasFinder	2514392-2514434	43	NZ_CP010836.1	693753-693795	2	0.953
NZ_CP010836_7	7.1\|2906196\|43\|NZ_CP010836\|CRISPRCasFinder	2906196-2906238	43	NZ_CP010836.1	693753-693795	2	0.953

1. spacer 3.1|2255724|43|NZ_CP010836|CRISPRCasFinder matches to position: 693753-693795, mismatch: 2, identity: 0.953

ccctcgccggcccgtggcggggcctgccgaaaaacgcgcatac	CRISPR spacer
ccctcgccggcccgtggcgaggcctgccgaaagacgcgcatac	Protospacer
*******************.************.**********

2. spacer 4.1|2514392|43|NZ_CP010836|CRISPRCasFinder matches to position: 693753-693795, mismatch: 2, identity: 0.953

cccgcgccggcccgtggcgaggcctgccgaaaaacgcgcatac	CRISPR spacer
ccctcgccggcccgtggcgaggcctgccgaaagacgcgcatac	Protospacer
*** ****************************.**********

3. spacer 7.1|2906196|43|NZ_CP010836|CRISPRCasFinder matches to position: 693753-693795, mismatch: 2, identity: 0.953

ccctcgccggcccgtagcgaggcctgccgaaaaacgcgcatac	CRISPR spacer
ccctcgccggcccgtggcgaggcctgccgaaagacgcgcatac	Protospacer
***************.****************.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	175195-175226	6	0.812
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP033220	Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence	25430-25461	7	0.781
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP033220	Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence	107112-107143	7	0.781
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NC_023724	Mycobacterium phage Larva, complete genome	58305-58336	7	0.781
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	MF185717	Mycobacterium phage AlleyCat, complete genome	57432-57463	7	0.781
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NC_028947	Mycobacterium phage Kratio, complete genome	57328-57359	7	0.781
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NC_015561	Hoyosella subflava DQS3-9A1 plasmid pAS9A-2, complete sequence	77892-77923	7	0.781
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP035420	Leisingera sp. NJS204 plasmid unnamed3, complete sequence	33056-33087	8	0.75
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP038235	Leisingera sp. NJS201 plasmid unnamed1, complete sequence	19234-19265	8	0.75
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	126805-126836	8	0.75
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NC_031243	Mycobacterium phage Xeno, complete genome	38736-38767	8	0.75
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	352224-352255	8	0.75
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	100578-100609	8	0.75
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	AP018487	Mycobacterium phage HC DNA, complete genome	38784-38815	8	0.75
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NC_023697	Mycobacterium phage Babsiella, complete genome	41238-41269	8	0.75
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP009112	Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence	285797-285828	9	0.719
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	217940-217971	9	0.719
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP034431	Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence	128306-128337	9	0.719
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	718670-718701	9	0.719
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	KM659091	Ochrobactrum sp. LM19 plasmid pLM19O1, complete sequence	7771-7802	9	0.719
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP019319	Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-7, complete sequence	36627-36658	10	0.688
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP013634	Rhizobium sp. N324 plasmid pRspN324d, complete sequence	32735-32766	10	0.688
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	332626-332657	10	0.688
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	NZ_CP020372	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence	274111-274142	10	0.688
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	MN694198	Marine virus AFVG_250M320, complete genome	7331-7362	11	0.656
NZ_CP010836_2	2.2\|1958486\|32\|NZ_CP010836\|CRISPRCasFinder	1958486-1958517	32	MN694596	Marine virus AFVG_250M321, complete genome	7316-7347	11	0.656

1. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 6, identity: 0.812

---ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
aaaccgc---cccggatcgaggtgggcgccctgcc	Protospacer
   ****   ********* **** ******** *

2. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP033220 (Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence) position: , mismatch: 7, identity: 0.781

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gaacgggcccggattgcggtgcgcgccctgcg	Protospacer
  .** ********.***************

3. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP033220 (Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence) position: , mismatch: 7, identity: 0.781

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gaacgggcccggattgcggtgcgcgccctgcg	Protospacer
  .** ********.***************

4. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NC_023724 (Mycobacterium phage Larva, complete genome) position: , mismatch: 7, identity: 0.781

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
tcgtgcgcccggatcgcggcgcgcgcagcgtc	Protospacer
.**.***************.******  .* *

5. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to MF185717 (Mycobacterium phage AlleyCat, complete genome) position: , mismatch: 7, identity: 0.781

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
tcgtgcgcccggatcgcggcgcgcgcagcgtc	Protospacer
.**.***************.******  .* *

6. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NC_028947 (Mycobacterium phage Kratio, complete genome) position: , mismatch: 7, identity: 0.781

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
tcgtgcgcccggatcgcggcgcgcgcagcgtc	Protospacer
.**.***************.******  .* *

7. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NC_015561 (Hoyosella subflava DQS3-9A1 plasmid pAS9A-2, complete sequence) position: , mismatch: 7, identity: 0.781

ccgcgcgcccggatcgcggtgc----gcgccctgac	CRISPR spacer
ccgcgcgcccggatcgctctgcggtagcgcgc----	Protospacer
*****************  ***    **** *

8. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP035420 (Leisingera sp. NJS204 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gagcgcgcccgcatcgccgtgcgcgcctgcaa	Protospacer
  ********* ***** *********.  *

9. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP038235 (Leisingera sp. NJS201 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gagcgcgcccggattgccgtgcgcgcctgtaa	Protospacer
  ************.** *********.  *

10. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gcgcgcgcccggatcgggctgcgcggcgcttc	Protospacer
 *************** * ****** * .  *

11. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NC_031243 (Mycobacterium phage Xeno, complete genome) position: , mismatch: 8, identity: 0.75

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gggcgcgcccggagcgctgtgcgcgacgggaa	Protospacer
  *********** *** ******* *  **

12. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gcgcgcgcccggatcgccgagcgctacgccac	Protospacer
 **************** * ****  * . **

13. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gagcccgccgggatcgcggtgcgcggcgaggc	Protospacer
  ** **** *************** *  *.*

14. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to AP018487 (Mycobacterium phage HC DNA, complete genome) position: , mismatch: 8, identity: 0.75

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gggcgcgcccggagcgctgtgcgcgacgggaa	Protospacer
  *********** *** ******* *  **

15. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NC_023697 (Mycobacterium phage Babsiella, complete genome) position: , mismatch: 8, identity: 0.75

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gggcgcgcccggagcgctgtgcgcgacgggaa	Protospacer
  *********** *** ******* *  **

16. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gtgcgcgtccggatcgcggtgcgcggttcctc	Protospacer
 .*****.***************** ...  *

17. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gccggcggccggctcgcggtgcgcgcccgccg	Protospacer
 *  *** **** ***************

18. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP034431 (Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
attaacgcccggatcgcggcgcgcaccccggc	Protospacer
 .  .**************.****.***.*.*

19. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gagcgcgcccgggtcgcgctgcgcggcggggt	Protospacer
  **********.***** ****** *  *..

20. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to KM659091 (Ochrobactrum sp. LM19 plasmid pLM19O1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
tcggcaatccggcttgcggtgcgcgccctgaa	Protospacer
.**   ..**** *.****************

21. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP019319 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-7, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gagcgcgcccgcatcgtggtgcgcgcggcaga	Protospacer
  ********* ****.*********  ...

22. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP013634 (Rhizobium sp. N324 plasmid pRspN324d, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
tccggcggccggatcgcgctgcgcgcctccga	Protospacer
.*  *** ********** ********.. .

23. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gggcgcgccctggtcgcggtgcgcgacagcga	Protospacer
  ******** *.************ *   .

24. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
gagcgcgcccggatcgcggtccccggtttcgg	Protospacer
  ****************** * ** ..* .

25. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to MN694198 (Marine virus AFVG_250M320, complete genome) position: , mismatch: 11, identity: 0.656

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
attcgctcccggatcgcggtgcacgctgccct	Protospacer
 . *** ***************.***. .  .

26. spacer 2.2|1958486|32|NZ_CP010836|CRISPRCasFinder matches to MN694596 (Marine virus AFVG_250M321, complete genome) position: , mismatch: 11, identity: 0.656

ccgcgcgcccggatcgcggtgcgcgccctgac	CRISPR spacer
attcgctcccggatcgcggtgcacgctgccct	Protospacer
 . *** ***************.***. .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

289012 : 368044

Arthrobacter_phage(11.11%)

integrase,transposase

attL 279980:279996|attR 303453:303469

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
279980:279996	attL	NA	NA	NA	NA
WP_044335646.1\|289012_290287_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A222ZES9	Arthrobacter_phage	8.1e-05	23.6
WP_077228385.1\|290421_290829_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	3.9e-17	55.6
WP_155006549.1\|290991_291954_-	mannan endo-1,4-beta-mannosidase A and B	NA	NA	NA	NA
WP_155006262.1\|292190_292706_+	hypothetical protein	NA	NA	NA	NA
WP_044329990.1\|292712_294188_+	sialate O-acetylesterase	NA	NA	NA	NA
WP_044329994.1\|294262_297436_+	TonB-dependent receptor	NA	NA	NA	NA
WP_077228387.1\|297536_299738_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_044329999.1\|299873_300809_+	ROK family protein	NA	NA	NA	NA
WP_044330000.1\|300883_302230_-	mannanase	NA	NA	NA	NA
WP_052507671.1\|302383_303907_+	carboxylesterase family protein	A0A0M4JT58	Mollivirus	5.7e-29	34.4
303453:303469	attR	NA	NA	NA	NA
WP_052507672.1\|303916_305140_-	ROK family transcriptional regulator	NA	NA	NA	NA
WP_052507673.1\|305291_305672_-	adenosylmethionine decarboxylase	A0A1D8KR70	Synechococcus_phage	1.3e-06	44.0
WP_155006265.1\|307039_307345_+	hypothetical protein	NA	NA	NA	NA
WP_044330003.1\|307518_308433_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_077228388.1\|308520_310188_+	sulfatase	A0A1V0SA98	Catovirus	2.7e-16	23.0
WP_044330007.1\|310321_310606_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_044330009.1\|310814_312746_-	TonB-dependent receptor	NA	NA	NA	NA
WP_044330010.1\|312880_313726_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_044335658.1\|313872_314247_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044330011.1\|315298_316222_+	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_155006267.1\|316406_316598_+	hypothetical protein	NA	NA	NA	NA
WP_044335662.1\|316645_317551_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_044335663.1\|317872_319249_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_044330013.1\|319393_320407_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044330014.1\|320922_321438_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_044330016.1\|321415_322354_+	FecR domain-containing protein	NA	NA	NA	NA
WP_162184679.1\|322468_325237_+	TonB-dependent receptor	NA	NA	NA	NA
WP_044330018.1\|325446_328107_+	TonB-dependent receptor	NA	NA	NA	NA
WP_155006268.1\|328246_329179_+	nuclease	NA	NA	NA	NA
WP_077228394.1\|329440_329872_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_044335668.1\|329864_331538_-	alpha-L-fucosidase	NA	NA	NA	NA
WP_077228395.1\|331951_332434_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_044330023.1\|332564_333302_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_044330025.1\|333319_333700_+	VOC family protein	NA	NA	NA	NA
WP_044330026.1\|334012_334423_-	VOC family protein	NA	NA	NA	NA
WP_044330027.1\|334433_334733_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044330028.1\|334798_335686_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_077228396.1\|336505_337174_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_077228397.1\|337170_338058_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_044330030.1\|338095_338662_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_044330031.1\|339362_340376_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044330033.1\|341904_343434_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_044330034.1\|343453_344284_+	aquaporin family protein	NA	NA	NA	NA
WP_044330035.1\|344323_345814_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_044330036.1\|345911_346718_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_044330037.1\|348599_349208_-	flavin reductase family protein	NA	NA	NA	NA
WP_077228399.1\|349213_350149_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_044330039.1\|350278_351409_+	cupin domain-containing protein	NA	NA	NA	NA
WP_044330040.1\|351447_352359_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_052507680.1\|352454_353753_+	carboxylesterase family protein	L7Y5U6	Megavirus	1.4e-12	33.7
WP_044330041.1\|353808_355125_-	MFS transporter	NA	NA	NA	NA
WP_044330042.1\|355121_356795_-	amidohydrolase	NA	NA	NA	NA
WP_044330043.1\|356819_358517_-	amidohydrolase	NA	NA	NA	NA
WP_044330044.1\|358535_361361_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.1e-22	24.0
WP_044330045.1\|361607_362330_+	FCD domain-containing protein	NA	NA	NA	NA
WP_044330046.1\|362343_362757_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_044330047.1\|362781_365070_-	bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase	NA	NA	NA	NA
WP_044330048.1\|365198_366728_+	benzoate-CoA ligase family protein	A0A2H4PQU7	Staphylococcus_phage	7.9e-47	31.8
WP_155006270.1\|366948_368044_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	5.7e-47	42.2

DBSCAN-SWA_2

2718783 : 2787821

Herpes_simplex_virus(12.5%)

holin,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077228580.1\|2718783_2721891_+\|tail	lamin tail domain-containing protein	NA	NA	NA	NA
WP_155006588.1\|2721894_2724825_-	DUF5110 domain-containing protein	NA	NA	NA	NA
WP_052507877.1\|2724929_2728151_-	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	7.7e-153	34.9
WP_044332431.1\|2728390_2730481_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_155006395.1\|2730485_2730656_-	hypothetical protein	NA	NA	NA	NA
WP_173426227.1\|2730652_2730829_-	hypothetical protein	NA	NA	NA	NA
WP_044332433.1\|2730831_2731800_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_077228582.1\|2731952_2733179_+	type III PLP-dependent enzyme	NA	NA	NA	NA
WP_044332437.1\|2733330_2734386_+	deoxyhypusine synthase	NA	NA	NA	NA
WP_044332439.1\|2734548_2735523_-	radical SAM protein	NA	NA	NA	NA
WP_044332442.1\|2735534_2736641_-	hypothetical protein	NA	NA	NA	NA
WP_044332444.1\|2736788_2737553_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_044332447.1\|2737651_2738059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044332449.1\|2738055_2738967_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_052507878.1\|2738980_2739853_+	hypothetical protein	NA	NA	NA	NA
WP_044332450.1\|2739924_2740359_+	MAPEG family protein	NA	NA	NA	NA
WP_044332451.1\|2740412_2741306_+	tyrosine recombinase XerC	A0A1B3B212	Gordonia_phage	5.9e-10	34.7
WP_044332452.1\|2741306_2741897_-	DedA family protein	NA	NA	NA	NA
WP_044332453.1\|2741907_2742864_-	glutathione synthase	NA	NA	NA	NA
WP_044332455.1\|2742907_2743270_-	YraN family protein	NA	NA	NA	NA
WP_044332457.1\|2743370_2743562_+	hypothetical protein	NA	NA	NA	NA
WP_044332459.1\|2743848_2744685_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_052507879.1\|2744696_2745911_+	penicillin-binding protein activator	NA	NA	NA	NA
WP_044332462.1\|2746081_2747974_-	amidotransferase 1, exosortase A system-associated	A0A0G2Y369	Acanthamoeba_polyphaga_mimivirus	1.7e-19	26.5
WP_077228583.1\|2747974_2749519_-	exosortase A	NA	NA	NA	NA
WP_044332464.1\|2749515_2750769_-	TIGR03087 family PEP-CTERM/XrtA system glycosyltransferase	NA	NA	NA	NA
WP_044332466.1\|2750768_2751842_-	FemAB family PEP-CTERM system-associated protein	NA	NA	NA	NA
WP_044332467.1\|2751838_2752681_-	DUF3473 domain-containing protein	NA	NA	NA	NA
WP_044332468.1\|2752685_2753840_-	AAA family ATPase	NA	NA	NA	NA
WP_052507881.1\|2753856_2755449_-	hypothetical protein	NA	NA	NA	NA
WP_044332469.1\|2755445_2756504_-	AAA family ATPase	NA	NA	NA	NA
WP_044332471.1\|2756508_2758023_-	chain-length determining protein	NA	NA	NA	NA
WP_044336214.1\|2758030_2758675_-	polysaccharide biosynthesis/export family protein	NA	NA	NA	NA
WP_044332472.1\|2758775_2759999_-	pyridoxal-dependent decarboxylase, exosortase A system-associated	NA	NA	NA	NA
WP_173426228.1\|2759995_2761483_-	acyl-CoA ligase (AMP-forming), exosortase A system-associated	A0A2K9KZV5	Tupanvirus	5.4e-24	25.6
WP_044332474.1\|2761536_2761830_+	acyl carrier protein	NA	NA	NA	NA
WP_044329758.1\|2762018_2762951_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	4.1e-22	34.8
WP_044332475.1\|2763207_2763846_+	hypothetical protein	NA	NA	NA	NA
WP_044332476.1\|2763833_2764649_+	hydrolase 1, exosortase A system-associated	NA	NA	NA	NA
WP_044332478.1\|2764727_2765426_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_044332480.1\|2765515_2765959_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_044332482.1\|2765961_2766708_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_044332484.1\|2766704_2768462_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_044332486.1\|2768466_2770521_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_044332488.1\|2770525_2771458_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_044332490.1\|2771477_2772794_-	MFS transporter	NA	NA	NA	NA
WP_044332492.1\|2772793_2773561_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.0e-12	32.5
WP_044332495.1\|2773557_2774682_-	EstA family serine hydrolase	NA	NA	NA	NA
WP_044332497.1\|2774705_2776841_-	TonB-dependent receptor	NA	NA	NA	NA
WP_044336216.1\|2776974_2777628_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_155006396.1\|2778006_2781555_+	hypothetical protein	NA	NA	NA	NA
WP_044332498.1\|2781541_2782888_+	ATP-binding protein	A0A1C9EGA6	Acidianus_two-tailed_virus	2.8e-11	36.7
WP_044332500.1\|2783016_2783613_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_044332502.1\|2783609_2784899_+	hypothetical protein	NA	NA	NA	NA
WP_052507883.1\|2784953_2786798_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
WP_044332504.1\|2786844_2787297_+\|tail	phage tail protein	A0A059XP41	uncultured_phage	9.8e-22	43.4
WP_044332506.1\|2787296_2787821_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_3

3071644 : 3081019

Catovirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044332848.1\|3071644_3072817_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	5.0e-41	35.1
WP_044336281.1\|3072941_3073595_+	hypothetical protein	NA	NA	NA	NA
WP_044332849.1\|3073596_3074043_+	dUTP diphosphatase	K4JSC8	Caulobacter_phage	2.0e-35	57.1
WP_044332850.1\|3074039_3074420_+	hypothetical protein	NA	NA	NA	NA
WP_044332851.1\|3074416_3075208_+	molybdopterin-synthase adenylyltransferase MoeB	A0A1V0SAV8	Catovirus	1.5e-09	28.3
WP_044332852.1\|3075204_3076215_+	NAD-dependent epimerase/dehydratase family protein	A0A0K0KW07	Prochlorococcus_phage	7.6e-06	26.5
WP_044332853.1\|3076275_3077622_+	nucleotide sugar dehydrogenase	M1HEP0	Acanthocystis_turfacea_Chlorella_virus	2.2e-32	28.8
WP_044332855.1\|3077626_3078493_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	3.0e-67	48.4
WP_044332856.1\|3078600_3079737_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	4.4e-18	25.4
WP_044332858.1\|3079720_3081019_+	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HNJ7	Paramecium_bursaria_Chlorella_virus	5.3e-28	28.2

DBSCAN-SWA_4

3151911 : 3206016

Arthrobacter_phage(15.38%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044332908.1\|3151911_3152451_+\|tail	phage tail protein	V5YTB8	Pseudomonas_phage	8.2e-07	29.8
WP_077228846.1\|3152529_3153033_+\|tail	phage tail protein	A0A0U4JYA4	Arthrobacter_phage	8.4e-14	32.1
WP_044332913.1\|3153082_3153625_+\|tail	phage tail protein	A0A222ZH31	Arthrobacter_phage	1.7e-12	30.6
WP_077228847.1\|3153735_3154197_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_155006596.1\|3154189_3154423_-	hypothetical protein	NA	NA	NA	NA
WP_044332918.1\|3154572_3156396_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	9.6e-108	38.7
WP_155006420.1\|3156506_3156908_-	hypothetical protein	NA	NA	NA	NA
WP_044332922.1\|3156904_3158263_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L4K9	Tupanvirus	2.0e-25	37.0
WP_044332924.1\|3158337_3159018_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_155006421.1\|3159912_3160584_+	hypothetical protein	NA	NA	NA	NA
WP_044332925.1\|3160593_3161610_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_044332926.1\|3161594_3162455_-	HprK-related kinase A	NA	NA	NA	NA
WP_044332928.1\|3162442_3162727_-	HPr-rel-A system PqqD family peptide chaperone	NA	NA	NA	NA
WP_044332930.1\|3162732_3163122_-	hypothetical protein	NA	NA	NA	NA
WP_044332932.1\|3163206_3164409_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	2.4e-30	33.8
WP_155006422.1\|3164491_3165523_+	substrate-binding domain-containing protein	A0A1B1IWY0	uncultured_Mediterranean_phage	6.2e-72	44.0
WP_044332935.1\|3165578_3166952_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_044332936.1\|3166944_3168270_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_044332937.1\|3168269_3169037_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-13	28.9
WP_044332939.1\|3169036_3169738_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_044332940.1\|3169747_3170440_+	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	4.8e-36	35.9
WP_044332943.1\|3170516_3171407_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_044329758.1\|3171598_3172531_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	4.1e-22	34.8
WP_044332946.1\|3172772_3173021_+	hypothetical protein	NA	NA	NA	NA
WP_044332948.1\|3173087_3174206_+	hypothetical protein	NA	NA	NA	NA
WP_044332950.1\|3174260_3174713_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_044332952.1\|3174719_3175055_-	DUF2794 domain-containing protein	NA	NA	NA	NA
WP_044336304.1\|3175067_3175763_-	serine acetyltransferase	NA	NA	NA	NA
WP_044332955.1\|3175923_3176688_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_044332958.1\|3176707_3177334_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_044332960.1\|3177397_3177580_+	hypothetical protein	NA	NA	NA	NA
WP_044332961.1\|3177695_3178259_+	peroxiredoxin	NA	NA	NA	NA
WP_044332962.1\|3178377_3179961_+	alkyl hydroperoxide reductase subunit F	A0A2I2L5E1	Orpheovirus	7.4e-32	30.9
WP_044332965.1\|3180176_3181082_+	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_044332967.1\|3181083_3181374_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_044332969.1\|3181394_3181658_-	addiction module antitoxin	NA	NA	NA	NA
WP_044332972.1\|3181691_3182129_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA
WP_044332974.1\|3182125_3182383_-	molybdopterin converting factor subunit 1	NA	NA	NA	NA
WP_044332976.1\|3182382_3182949_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_044332978.1\|3183066_3184359_+	MFS transporter	NA	NA	NA	NA
WP_173426234.1\|3184424_3184592_-	hypothetical protein	NA	NA	NA	NA
WP_044332981.1\|3184681_3185689_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	4.7e-32	29.7
WP_044332984.1\|3185960_3189089_+	TonB-dependent receptor	NA	NA	NA	NA
WP_173426235.1\|3189188_3191813_+	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA
WP_155006423.1\|3192058_3192979_+	hypothetical protein	NA	NA	NA	NA
WP_044332087.1\|3193218_3194295_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_173426276.1\|3194555_3195512_-	cupin domain-containing protein	NA	NA	NA	NA
WP_052507933.1\|3195697_3196177_+	hypothetical protein	NA	NA	NA	NA
WP_044332989.1\|3196145_3197471_-	MFS transporter	NA	NA	NA	NA
WP_044332991.1\|3197604_3198528_+	cupin domain-containing protein	NA	NA	NA	NA
WP_044332994.1\|3198552_3198987_+	hypothetical protein	NA	NA	NA	NA
WP_077228621.1\|3199009_3200011_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_044332998.1\|3200014_3200542_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_155006597.1\|3200541_3200838_-	hypothetical protein	NA	NA	NA	NA
WP_044333000.1\|3200885_3202805_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_044336313.1\|3202958_3204146_+	CoA transferase	NA	NA	NA	NA
WP_044333003.1\|3204142_3204925_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_044329758.1\|3205083_3206016_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	4.1e-22	34.8

DBSCAN-SWA_5

3479260 : 3523214

Sinorhizobium_phage(22.22%)

head,tRNA,capsid,tail,transposase,integrase

attL 3490436:3490452|attR 3528538:3528554

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044329758.1\|3479260_3480193_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	4.1e-22	34.8
WP_044333438.1\|3480505_3481996_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_173426280.1\|3482006_3482942_+	alpha-E domain-containing protein	NA	NA	NA	NA
WP_044333442.1\|3482941_3483751_+	transglutaminase family protein	NA	NA	NA	NA
WP_052507956.1\|3483826_3484651_-	RcnB family protein	NA	NA	NA	NA
WP_044333445.1\|3484768_3485257_-	GAF domain-containing protein	NA	NA	NA	NA
WP_044333446.1\|3485408_3485810_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_044333448.1\|3485802_3486453_-	RNA pseudouridine synthase	NA	NA	NA	NA
WP_044333450.1\|3486611_3487214_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_044333452.1\|3487285_3487984_-	pirin family protein	NA	NA	NA	NA
WP_044336408.1\|3488102_3489014_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_044333454.1\|3489203_3489911_+	response regulator transcription factor	F4YXP8	Roseobacter_phage	1.5e-16	51.6
WP_044333455.1\|3490163_3491834_-	amidohydrolase	NA	NA	NA	NA
3490436:3490452	attL	NA	NA	NA	NA
WP_044333456.1\|3491894_3493139_+	threonine ammonia-lyase	NA	NA	NA	NA
WP_044333458.1\|3493628_3494411_+	arginyltransferase	NA	NA	NA	NA
WP_044333460.1\|3494558_3494894_+	hypothetical protein	NA	NA	NA	NA
WP_044333461.1\|3495105_3495561_-	universal stress protein	NA	NA	NA	NA
WP_044333468.1\|3497000_3497216_+	hypothetical protein	NA	NA	NA	NA
WP_044333470.1\|3497208_3497592_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_044333472.1\|3497690_3498077_+	endonuclease domain-containing protein	NA	NA	NA	NA
WP_044333474.1\|3498081_3499482_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_044333476.1\|3499489_3500425_-	methyltransferase	NA	NA	NA	NA
WP_077228648.1\|3500780_3501563_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_044336412.1\|3501787_3502390_+	SOS response-associated peptidase	NA	NA	NA	NA
WP_044333478.1\|3502386_3503595_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	6.8e-78	40.7
WP_044333480.1\|3503629_3503899_+	hypothetical protein	NA	NA	NA	NA
WP_044333482.1\|3504037_3504832_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	7.4e-81	58.6
WP_044333484.1\|3505225_3505528_+	hypothetical protein	NA	NA	NA	NA
WP_044333486.1\|3505657_3506170_-	glycoside hydrolase family protein	A0A223LHH7	Pseudoalteromonas_phage	1.6e-23	40.0
WP_155006439.1\|3506166_3506310_-	hypothetical protein	NA	NA	NA	NA
WP_044333488.1\|3506306_3506501_-	hypothetical protein	NA	NA	NA	NA
WP_044333489.1\|3506639_3507392_-	hypothetical protein	NA	NA	NA	NA
WP_044333491.1\|3507406_3509230_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_044333493.1\|3509229_3509622_-	hypothetical protein	NA	NA	NA	NA
WP_044333495.1\|3509642_3510203_-	hypothetical protein	NA	NA	NA	NA
WP_044333497.1\|3510199_3513727_-	hypothetical protein	A0A2D1GPP3	Lactobacillus_phage	8.5e-44	48.1
WP_044333498.1\|3513730_3514153_-	hypothetical protein	NA	NA	NA	NA
WP_044333500.1\|3514158_3514746_-	hypothetical protein	NA	NA	NA	NA
WP_044333501.1\|3514745_3515339_-	hypothetical protein	A0A2P1CKS5	Pantoea_phage	2.4e-12	29.0
WP_044333503.1\|3515335_3518386_-	hypothetical protein	A0A1P8VVI0	Erythrobacter_phage	4.5e-09	25.1
WP_077228649.1\|3518416_3518527_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_044333505.1\|3518547_3518961_-	hypothetical protein	NA	NA	NA	NA
WP_044333507.1\|3518957_3519383_-	hypothetical protein	NA	NA	NA	NA
WP_044333509.1\|3519401_3519818_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_044333510.1\|3519814_3520423_-	hypothetical protein	NA	NA	NA	NA
WP_044333511.1\|3520422_3520764_-\|head	phage head closure protein	NA	NA	NA	NA
WP_044333512.1\|3520760_3521279_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_052507958.1\|3521331_3521781_-	hypothetical protein	NA	NA	NA	NA
WP_077228652.1\|3521846_3523214_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	2.6e-73	38.5
3528538:3528554	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3783586 : 3869067

105

Alteromonadaceae_phage(16.67%)

head,plate,capsid,portal,tail,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044333826.1\|3783586_3783994_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_044333827.1\|3784389_3784791_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_052508131.1\|3784787_3784982_-	hypothetical protein	NA	NA	NA	NA
WP_044336495.1\|3784981_3785539_-	hypothetical protein	NA	NA	NA	NA
WP_044333828.1\|3785565_3785844_-	hypothetical protein	NA	NA	NA	NA
WP_155006460.1\|3785840_3786605_-	hypothetical protein	NA	NA	NA	NA
WP_044333829.1\|3786604_3786871_-	hypothetical protein	NA	NA	NA	NA
WP_044333830.1\|3786974_3788030_-\|capsid	phage major capsid protein	Q8W627	Enterobacteria_phage	1.0e-77	49.7
WP_044333831.1\|3788108_3788603_-	hypothetical protein	NA	NA	NA	NA
WP_173426242.1\|3788599_3789079_-\|head,protease	HK97 family phage prohead protease	I6S2W2	Marinomonas_phage	1.2e-06	34.9
WP_044333832.1\|3789000_3789309_-	hypothetical protein	K4I011	Acidithiobacillus_phage	3.2e-08	47.4
WP_044333833.1\|3789308_3790415_-\|portal	phage portal protein	A0A0K1LLE7	Bacillus_phage	1.1e-47	35.5
WP_044333834.1\|3790639_3791308_-	spermidine synthase	NA	NA	NA	NA
WP_044333835.1\|3791507_3791918_+	endonuclease domain-containing protein	NA	NA	NA	NA
WP_044333836.1\|3792027_3793344_-	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	3.3e-70	38.7
WP_044333837.1\|3793340_3793790_-	hypothetical protein	NA	NA	NA	NA
WP_077228672.1\|3794291_3794867_-	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_077228866.1\|3794885_3795380_-	helix-turn-helix transcriptional regulator	A5X9F5	Aeromonas_virus	1.5e-10	26.5
WP_044333839.1\|3795596_3795857_+	hypothetical protein	NA	NA	NA	NA
WP_155006607.1\|3796786_3797278_+	MucR family transcriptional regulator	NA	NA	NA	NA
WP_044333840.1\|3797274_3797562_+	hypothetical protein	NA	NA	NA	NA
WP_155006461.1\|3797558_3797705_+	hypothetical protein	NA	NA	NA	NA
WP_044333841.1\|3797701_3798205_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_162184737.1\|3798204_3798450_+	hypothetical protein	NA	NA	NA	NA
WP_044333843.1\|3798623_3799007_+	hypothetical protein	NA	NA	NA	NA
WP_155006462.1\|3799006_3799150_+	hypothetical protein	NA	NA	NA	NA
WP_044333844.1\|3799149_3799557_+	hypothetical protein	NA	NA	NA	NA
WP_052507979.1\|3799556_3800006_+	hypothetical protein	NA	NA	NA	NA
WP_162184738.1\|3800002_3801970_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A1B0T6N2	Pelagibaca_phage	1.8e-123	40.7
WP_044333845.1\|3801988_3802963_+	AAA family ATPase	M4M9P4	Vibrio_phage	1.5e-22	26.7
WP_077228674.1\|3802959_3803382_+	hypothetical protein	NA	NA	NA	NA
WP_044333846.1\|3803378_3804095_+	regulatory protein GemA	H6V8M4	Pseudomonas_phage	3.4e-08	33.3
WP_044333847.1\|3804091_3804298_+	hypothetical protein	NA	NA	NA	NA
WP_044333848.1\|3804300_3804696_+	hypothetical protein	NA	NA	NA	NA
WP_052507982.1\|3804767_3805421_+	hypothetical protein	F4N9V8	Pantoea_phage	5.3e-08	34.6
WP_044333849.1\|3805417_3805942_+	hypothetical protein	NA	NA	NA	NA
WP_155006463.1\|3805949_3806144_+	hypothetical protein	NA	NA	NA	NA
WP_044333851.1\|3806140_3808174_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_044333852.1\|3808188_3808941_+	hypothetical protein	NA	NA	NA	NA
WP_044333853.1\|3808984_3809437_+	hypothetical protein	NA	NA	NA	NA
WP_155006464.1\|3809429_3809837_+	hypothetical protein	NA	NA	NA	NA
WP_044333855.1\|3809833_3810136_+	hypothetical protein	NA	NA	NA	NA
WP_044333856.1\|3810135_3810708_+	DUF3486 family protein	NA	NA	NA	NA
WP_077228676.1\|3810707_3812219_+	hypothetical protein	A0A1B1P714	Rhodovulum_phage	3.1e-128	51.7
WP_052507983.1\|3812234_3814370_+	DUF935 family protein	M4SPR8	Rhodobacter_phage	1.7e-95	43.2
WP_044333857.1\|3814362_3814752_+	DUF935 family protein	NA	NA	NA	NA
WP_044333858.1\|3814748_3814934_+	hypothetical protein	NA	NA	NA	NA
WP_052508132.1\|3814954_3815518_+	DUF1643 domain-containing protein	NA	NA	NA	NA
WP_052507984.1\|3815518_3816658_+\|capsid	minor capsid protein	A0A2P1A4D1	Alteromonadaceae_phage	1.2e-55	41.6
WP_044333860.1\|3816780_3817881_+	hypothetical protein	B7SDN9	Haemophilus_phage	4.0e-16	25.0
WP_052507985.1\|3817880_3818687_+	hypothetical protein	NA	NA	NA	NA
WP_052507986.1\|3818699_3819605_+\|head	Mu-like prophage major head subunit gpT family protein	A0SMP3	Pseudomonas_virus	1.4e-46	39.2
WP_044333861.1\|3819604_3820228_+	hypothetical protein	NA	NA	NA	NA
WP_044333862.1\|3820337_3820751_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_052507987.1\|3820750_3821311_+	phage virion morphogenesis protein	NA	NA	NA	NA
WP_052507988.1\|3821438_3822104_+	DUF1834 family protein	NA	NA	NA	NA
WP_044333863.1\|3822106_3822346_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_044333864.1\|3822342_3823779_+\|tail	phage tail sheath subtilisin-like domain-containing protein	U5P0H3	Shigella_phage	2.9e-59	37.3
WP_044333865.1\|3823813_3824185_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_044333866.1\|3824289_3824574_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_052507989.1\|3824696_3826280_+	hypothetical protein	R9U4C6	Rhizobium_phage	1.0e-57	55.3
WP_044333867.1\|3826276_3827509_+	DNA circularization N-terminal domain-containing protein	A0A2P9JZK2	Alteromonadaceae_phage	1.3e-28	29.1
WP_052507990.1\|3827501_3828575_+	hypothetical protein	A0A2I7S9G1	Vibrio_phage	4.2e-55	38.4
WP_052507991.1\|3828571_3829300_+\|plate	phage baseplate assembly protein V	Q8SBG6	Shigella_phage	1.9e-19	43.8
WP_044333868.1\|3829296_3829557_+	hypothetical protein	NA	NA	NA	NA
WP_052507992.1\|3829553_3830042_+	phage GP46 family protein	A0A2P9JZK5	Alteromonadaceae_phage	7.9e-25	44.5
WP_044333869.1\|3830038_3831085_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.9e-53	39.7
WP_052507993.1\|3831081_3831684_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	9.1e-23	38.2
WP_044333870.1\|3831687_3832206_+	hypothetical protein	NA	NA	NA	NA
WP_044333871.1\|3832629_3835104_+	TonB-dependent receptor	NA	NA	NA	NA
WP_044333872.1\|3835104_3836058_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_044333873.1\|3836095_3836758_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_044333874.1\|3836863_3839356_+	DUF2339 domain-containing protein	NA	NA	NA	NA
WP_155006468.1\|3839372_3839720_-	hypothetical protein	NA	NA	NA	NA
WP_044333877.1\|3839842_3840325_-	hypothetical protein	NA	NA	NA	NA
WP_044333878.1\|3840411_3840975_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044333879.1\|3841058_3841427_+	hypothetical protein	NA	NA	NA	NA
WP_044333881.1\|3841620_3842547_-	winged helix DNA-binding protein	NA	NA	NA	NA
WP_044333883.1\|3842715_3844191_-	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA
WP_044333884.1\|3844216_3844510_-	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_044333886.1\|3844512_3844881_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_044333889.1\|3845027_3846149_-	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_077228678.1\|3846150_3846288_-	aa3-type cytochrome c oxidase subunit IV	NA	NA	NA	NA
WP_044333890.1\|3846450_3847878_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_044333892.1\|3848033_3848597_-	cytochrome b	NA	NA	NA	NA
WP_044336534.1\|3848728_3849889_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_044333894.1\|3850042_3850999_-	cation transporter	NA	NA	NA	NA
WP_044333895.1\|3851005_3851368_-	hypothetical protein	NA	NA	NA	NA
WP_044333896.1\|3851504_3852272_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_044333897.1\|3852391_3852928_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_044333898.1\|3852971_3855266_-	TonB-dependent receptor	NA	NA	NA	NA
WP_077228867.1\|3855262_3855679_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_044333900.1\|3856002_3857562_+	MFS transporter	NA	NA	NA	NA
WP_044333901.1\|3857722_3858259_-	superoxide dismutase family protein	A0A1B2CSE7	Plutella_xylostella_granulovirus	5.3e-06	37.7
WP_044333902.1\|3858342_3859389_-	hypothetical protein	NA	NA	NA	NA
WP_155006469.1\|3859391_3860192_-	hypothetical protein	NA	NA	NA	NA
WP_052508133.1\|3860294_3860930_+	hypothetical protein	NA	NA	NA	NA
WP_044333905.1\|3860926_3862075_+	hypothetical protein	NA	NA	NA	NA
WP_044333907.1\|3862064_3863021_+	MoxR family ATPase	NA	NA	NA	NA
WP_044333910.1\|3863017_3864307_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_044333912.1\|3864303_3865302_+	stage II sporulation protein M	NA	NA	NA	NA
WP_044333913.1\|3865285_3866140_+	RDD family protein	NA	NA	NA	NA
WP_044333915.1\|3866147_3866351_-	hypothetical protein	NA	NA	NA	NA
WP_044333916.1\|3866365_3867703_-	hypothetical protein	NA	NA	NA	NA
WP_044332087.1\|3867990_3869067_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

4500019 : 4623160

108

Bacillus_phage(12.5%)

integrase,tRNA,transposase

attL 4528706:4528765|attR 4565497:4566849

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044334715.1\|4500019_4501363_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	1.8e-119	51.8
WP_044334716.1\|4501411_4501750_+	addiction module protein	NA	NA	NA	NA
WP_044334718.1\|4501754_4502078_+	transcriptional regulator	NA	NA	NA	NA
WP_162184751.1\|4502640_4505169_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.7e-22	37.9
WP_044334721.1\|4505162_4507280_+	Atxe2 family lasso peptide isopeptidase	NA	NA	NA	NA
WP_044334723.1\|4507407_4507659_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_044334725.1\|4507658_4508984_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_044334727.1\|4509023_4510781_-	asparagine synthase	NA	NA	NA	NA
WP_077228723.1\|4510777_4511446_-	lasso peptide biosynthesis B2 protein	NA	NA	NA	NA
WP_155006504.1\|4511485_4511611_-	benenodin family lasso peptide	NA	NA	NA	NA
WP_052508037.1\|4511902_4512970_-	FecR domain-containing protein	NA	NA	NA	NA
WP_044334731.1\|4512966_4513506_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_077228725.1\|4513921_4514176_+	sigma-70 region 4 domain-containing protein	NA	NA	NA	NA
WP_044334733.1\|4514565_4514901_+	TfoX/Sxy family protein	NA	NA	NA	NA
WP_044332087.1\|4515459_4516536_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_173426289.1\|4516569_4518189_-	ATP-dependent helicase	A0A068EQC7	Bacillus_phage	2.8e-10	23.7
WP_052508038.1\|4518351_4518831_+	hypothetical protein	NA	NA	NA	NA
WP_077228728.1\|4518923_4519469_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_044334735.1\|4519465_4520665_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_044334737.1\|4520674_4520893_+	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_044334739.1\|4520889_4521111_+	AlpA family phage regulatory protein	B7SYF9	Stenotrophomonas_phage	1.4e-05	51.0
WP_044334740.1\|4521403_4522297_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_044336734.1\|4522440_4523427_+	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA
WP_044334741.1\|4523469_4524366_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_044334743.1\|4524521_4525268_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_044334745.1\|4525330_4526749_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	2.4e-50	35.4
WP_044334747.1\|4526757_4527387_+	LysE family translocator	NA	NA	NA	NA
WP_044334748.1\|4527390_4527699_-	hypothetical protein	NA	NA	NA	NA
WP_044334749.1\|4527742_4528486_-	SDR family oxidoreductase	NA	NA	NA	NA
4528706:4528765	attL	NA	NA	NA	NA
WP_044329667.1\|4528956_4529979_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044334751.1\|4531236_4532238_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_044334754.1\|4532268_4533132_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_044334756.1\|4533180_4534005_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_044334758.1\|4534102_4534891_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_044334760.1\|4534999_4535548_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_044334761.1\|4535766_4536873_+	Fic family protein	D7RWK9	Brochothrix_phage	7.5e-07	23.8
WP_044334763.1\|4537233_4538391_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	1.1e-77	43.6
WP_155006505.1\|4538651_4538942_+	hypothetical protein	NA	NA	NA	NA
WP_044334766.1\|4539253_4539688_+	hypothetical protein	NA	NA	NA	NA
WP_044334767.1\|4539656_4542365_+	HD domain-containing protein	A0A2K9L4D0	Tupanvirus	1.9e-19	24.2
WP_044334769.1\|4542961_4543870_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	6.3e-52	40.9
WP_044334772.1\|4543866_4544076_+	hypothetical protein	NA	NA	NA	NA
WP_044334774.1\|4544147_4545071_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_044334776.1\|4545143_4545419_+	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	4.6e-14	50.6
WP_044334778.1\|4545418_4545886_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_044336736.1\|4545880_4546096_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_044334780.1\|4546112_4546436_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_044334782.1\|4546608_4549632_+	Ti-type conjugative transfer relaxase TraA	A0A0R7EZ11	Diatraea_saccharalis_granulovirus	1.0e-05	23.8
WP_044334784.1\|4549634_4550339_+	hypothetical protein	NA	NA	NA	NA
WP_044334786.1\|4550535_4550829_-	hypothetical protein	NA	NA	NA	NA
WP_077228882.1\|4550828_4551017_-	hypothetical protein	NA	NA	NA	NA
WP_044334788.1\|4551463_4552156_-	HNH endonuclease	NA	NA	NA	NA
WP_044334789.1\|4552338_4553541_+	hypothetical protein	NA	NA	NA	NA
WP_155006506.1\|4553521_4554025_+	hypothetical protein	NA	NA	NA	NA
WP_044334790.1\|4554021_4555950_+	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_155006507.1\|4555974_4557459_+	hypothetical protein	NA	NA	NA	NA
WP_044329667.1\|4558546_4559569_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_155006508.1\|4559673_4560618_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	1.4e-09	18.6
WP_155006615.1\|4560681_4561629_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_044334796.1\|4561618_4562389_-	type IV toxin-antitoxin system AbiEi family antitoxin	NA	NA	NA	NA
WP_044334797.1\|4562766_4563003_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_155006509.1\|4563231_4564172_-\|transposase	IS630 family transposase	A0A2P0VP61	Tetraselmis_virus	4.6e-13	24.6
WP_044329667.1\|4564282_4565305_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_077228732.1\|4567262_4567481_+\|transposase	transposase	NA	NA	NA	NA
4565497:4566849	attR	NA	NA	NA	NA
WP_155006510.1\|4567493_4568451_-\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	9.1e-09	22.0
WP_044329667.1\|4568549_4569572_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_052508042.1\|4572296_4573025_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_044334804.1\|4573216_4574131_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_077228733.1\|4574105_4575017_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_077228734.1\|4575067_4576510_+	TolC family protein	NA	NA	NA	NA
WP_044334805.1\|4576506_4577541_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_044334806.1\|4577545_4578706_+	ABC transporter permease	NA	NA	NA	NA
WP_052508138.1\|4578702_4579842_+	ABC transporter permease	NA	NA	NA	NA
WP_155006511.1\|4579909_4580860_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044334808.1\|4581423_4581828_+	hypothetical protein	NA	NA	NA	NA
WP_077228736.1\|4581931_4584013_+	TonB-dependent receptor	NA	NA	NA	NA
WP_044334811.1\|4584012_4584831_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_044334812.1\|4584864_4585269_+	hypothetical protein	NA	NA	NA	NA
WP_155006512.1\|4585366_4585540_+	hypothetical protein	NA	NA	NA	NA
WP_162184752.1\|4585623_4586064_+	DUF2244 domain-containing protein	NA	NA	NA	NA
WP_044334816.1\|4586060_4587203_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_044334817.1\|4587199_4589338_+	TonB-dependent receptor	NA	NA	NA	NA
WP_052508045.1\|4589488_4590349_+	metallo-mystery pair system four-Cys motif protein	NA	NA	NA	NA
WP_044334818.1\|4590330_4591542_+	di-heme enzyme	NA	NA	NA	NA
WP_044334820.1\|4591538_4591895_+	copper resistance protein CopC	NA	NA	NA	NA
WP_044334822.1\|4591896_4593537_+	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_044334824.1\|4593856_4594783_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_044334826.1\|4594827_4595634_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_044334828.1\|4595757_4597200_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_044334830.1\|4597214_4597901_+	DUF2059 domain-containing protein	NA	NA	NA	NA
WP_052508046.1\|4597897_4598533_+	hypothetical protein	NA	NA	NA	NA
WP_044334832.1\|4598529_4603038_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_044334833.1\|4603492_4604164_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_044334834.1\|4604222_4604840_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_044334835.1\|4604849_4605704_-	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	6.6e-51	41.8
WP_044334837.1\|4606218_4607259_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.7e-11	32.3
WP_044334839.1\|4607396_4607945_-	redoxin domain-containing protein	NA	NA	NA	NA
WP_044334841.1\|4608010_4609069_-	phospholipase A	NA	NA	NA	NA
WP_044334842.1\|4609158_4609941_+	histidinol-phosphatase	NA	NA	NA	NA
WP_044334844.1\|4609945_4612069_-	AsmA family protein	NA	NA	NA	NA
WP_044334846.1\|4612384_4613440_+	Ppx/GppA family phosphatase	NA	NA	NA	NA
WP_044334848.1\|4613436_4614126_+	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_044334849.1\|4614192_4614537_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_044334851.1\|4614664_4615603_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_044334852.1\|4615708_4617136_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_044334853.1\|4617132_4620321_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_077228739.1\|4620327_4621674_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_044334855.1\|4621918_4623160_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010837

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1688 : 9711

Aeropyrum_coil-shaped_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044337066.1\|1688_2687_-	glycosyltransferase family 2 protein	A0A2P1ELT8	Moumouvirus	2.0e-06	32.7
WP_155006624.1\|2683_4030_-	hypothetical protein	NA	NA	NA	NA
WP_044337070.1\|4070_4967_-	NAD(P)-dependent oxidoreductase	J7Q7J8	Aeropyrum_coil-shaped_virus	1.8e-06	24.4
WP_173426293.1\|4963_5527_-	dTDP-4-dehydrorhamnose 3,5-epimerase	K7QL66	Escherichia_phage	3.2e-22	35.4
WP_044337074.1\|5534_6848_-	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	2.1e-56	31.9
WP_155006625.1\|6859_7948_-	CDP-glucose 4,6-dehydratase	J7Q7J8	Aeropyrum_coil-shaped_virus	5.3e-13	26.3
WP_044337076.1\|7941_8712_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_044337078.1\|8721_9711_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A1D8KP97	Synechococcus_phage	8.2e-05	38.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010836

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010837

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection