CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP006723	Leptospira interrogans serovar Linhai str. 56609 chromosome 1, complete sequence	17 crisprs	WYL,csa3,cas3,DinG,cas6,cas1,cas2,cas8b3,cas7,cas5,cas8c,cas4,Cas9_archaeal	4	7	2
NZ_CP006727	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence	2 crisprs	NA	0	2	6
NZ_CP006726	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp2, complete sequence	0 crisprs	NA	0	0	0
NZ_CP006725	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence	0 crisprs	NA	0	0	1
NZ_CP006724	Leptospira interrogans serovar Linhai str. 56609 chromosome 2, complete sequence	0 crisprs	csa3	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006723_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_1

1229257-1229359

Orphan

Consensus_repeat	Method
CTCTTAGAACGATCAAGATTTTGATATGAAATTAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006723_1

>merge|NZ_CP006723|1|1229257-1229359|CRISPRCasFinder
CTCTTAGAACGATCAAGATTTTGATATGAAATTAAAAAATGCAGTAGTTCCCACAGAATTACGTCTCTTAAAACGATCAAGATTTTGATATGAAATTAAAAAA

>NZ_CP006723|1|1|1229257-1229359|CRISPRCasFinder
CTCTTAGAACGATCAAGATTTTGATATGAAATTAAAAAA	TGCAGTAGTTCCCACAGAATTACGT
CTCTTAAAACGATCAAGATTTTGATATGAAATTAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000723997.1\|1237935_1238682_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275213
NZ_CP006723.1\|WP_000833715.1\|1238692_1240621_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP006723.1\|WP_000421034.1\|1220960_1221980_+\|4-phosphoerythronate-dehydrogenase	unknown	unknown	gnl\|CDD\|240635
NZ_CP006723.1\|WP_154232735.1\|1224821_1224977_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001045091.1\|1235825_1236572_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP006723.1\|WP_001001361.1\|1228104_1228536_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379324
NZ_CP006723.1\|WP_000508810.1\|1229735_1230905_+\|DUF1577-domain-containing-protein	unknown	unknown	gnl\|CDD\|369443
NZ_CP006723.1\|WP_000876121.1\|1227762_1228005_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000493052.1\|1226918_1227584_-\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NZ_CP006723.1\|WP_000365024.1\|1225047_1226748_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173838
NZ_CP006723.1\|WP_001072287.1\|1233391_1234507_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NZ_CP006723.1\|WP_082268235.1\|1219675_1219828_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000433680.1\|1236546_1237557_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_CP006723.1\|WP_000141830.1\|1237612_1237939_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|376903
NZ_CP006723.1\|WP_000854849.1\|1219839_1220874_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377013
NZ_CP006723.1\|WP_000079210.1\|1223307_1224210_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP006723.1\|WP_000196651.1\|1232596_1233370_+\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|319983
NZ_CP006723.1\|WP_002102063.1\|1224187_1224874_-\|DNA-alkylation-repair-enzyme	unknown	unknown	gnl\|CDD\|132880
NZ_CP006723.1\|WP_000358329.1\|1234515_1235829_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|223694
NZ_CP006723.1\|WP_138984322.1\|1231174_1232316_+\|IS3-like-element-IS1501-family-transposase	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000723997.1\|1237935_1238682_+\|hypothetical-protein	gnl\|CDD\|275213	TIGR04420, Sec_Non_Glob, Sec region non-globular protein. Members of this family occur only in the genus Leptospira, always encoded between genes for the YajC and SecD components of the Sec preprotein translocase. Sequences have an N-terminal signal peptide and a C-terminal transmembrane segment. Between these are regions of non-globular, low-complexity sequence including Lys-rich and Ser/Thr/Asn/Glu-rich regions.	6.82364e-87
NZ_CP006723.1\|WP_000833715.1\|1238692_1240621_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	2.95752e-150
NZ_CP006723.1\|WP_000421034.1\|1220960_1221980_+\|4-phosphoerythronate-dehydrogenase	gnl\|CDD\|240635	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains. D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	6.516e-108
NZ_CP006723.1\|WP_001045091.1\|1235825_1236572_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	4.27529e-35
NZ_CP006723.1\|WP_001001361.1\|1228104_1228536_+\|ATP-binding-protein	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	1.41408e-13
NZ_CP006723.1\|WP_000508810.1\|1229735_1230905_+\|DUF1577-domain-containing-protein	gnl\|CDD\|369443	pfam07614, DUF1577, Protein of unknown function (DUF1577). A family of hypothetical proteins in Leptospira interrogans.	1.24948e-102
NZ_CP006723.1\|WP_000493052.1\|1226918_1227584_-\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	2.76577e-55
NZ_CP006723.1\|WP_138984322.1\|1231174_1232316_+\|IS3-like-element-IS1501-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.85613e-57
NZ_CP006723.1\|WP_001072287.1\|1233391_1234507_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	1.16019e-20
NZ_CP006723.1\|WP_000433680.1\|1236546_1237557_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	7.96128e-154
NZ_CP006723.1\|WP_000141830.1\|1237612_1237939_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|376903	pfam02699, YajC, Preprotein translocase subunit. See.	1.26653e-26
NZ_CP006723.1\|WP_000854849.1\|1219839_1220874_-\|hypothetical-protein	gnl\|CDD\|377013	pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein.	3.79038e-08
NZ_CP006723.1\|WP_000079210.1\|1223307_1224210_-\|radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.56313e-20
NZ_CP006723.1\|WP_000196651.1\|1232596_1233370_+\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|319983	cd16325, LolA, LolA, a periplasmic chaperone. This family contains periplasmic molecular chaperone LolA which binds to outer-membrane specific lipoproteins and transports them from inner membrane to outer membrane (OM) through LolB, a lipoprotein anchored to outer membranes. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts OM-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. Studies have shown that hydrophobic surface patches large enough to accommodate acyl chains of the OM lipoproteins and the structural flexibility of LolA are important factors for its role as a periplasmic chaperone.	1.73701e-24
NZ_CP006723.1\|WP_002102063.1\|1224187_1224874_-\|DNA-alkylation-repair-enzyme	gnl\|CDD\|132880	cd06561, AlkD_like, A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.	1.44538e-09
NZ_CP006723.1\|WP_000358329.1\|1234515_1235829_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	1.1642e-119
NZ_CP006723.1\|WP_000365024.1\|1225047_1226748_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	7.81499e-42

>NZ_CP006723.1|WP_001001361.1|1228104_1228536_+|ATP-binding-protein
MNEEKSLILLRGLPGAGKSRLAKLLSENGKYPVFSVDDYFTDSKTQEYNFDYKKNHLAYKHCEDCVRKEAERGTSKIFSDNTFTLSWEMEPYFQIASEFEYTIFVITVENYHNGKNVHSIDDESLKKMASKYKIRLLPEILSE
>NZ_CP006723.1|WP_000876121.1|1227762_1228005_-|hypothetical-protein
MKYLETEQIIPSKGMSYTMYEVEGEDQIQKMMTYIPNTDEIHIYPKPPVKKLYKPELCKVIDEVVFSELWKLGEERKAAK
>NZ_CP006723.1|WP_000493052.1|1226918_1227584_-|protein-L-isoaspartate-O-methyltransferase
MFSSSKVCNPILREQERKNMVDLQIASRGIRDKKILSAMLSIPRECFVPNSHISQAYEDKPLPIGCNQTISQPFMVAWMSLLLEVRKGDRIFEIGTGSGYQSAVLIFLEATLYSVEFFDSLSKTATQNLECWNPGCTQTNRFMIGSATEILKPELQFDKMISCAALPNLPDTKSSYFQSLIPGGIFIFPMGKRDQYLIFAKRNLNDWSFESKGGVRFVPLL
>NZ_CP006723.1|WP_000365024.1|1225047_1226748_-|acyl-CoA-dehydrogenase
MDLLNPKKTEFKHLDEKSRNIMKRTIAFFEKKGKNKLKEDDRNQTWYADFLEFQKSEKIFATLMTPSGYGENDSRWDTTRICDFNEIAGFYGLCYWYTWQVSMLGLGPIWNSKNEEIKHKTAKLLLDGEIFAFGLSEKEHGADLISSDMSLENKGNGNYIANGRKYYIGNSNKAAIVSTFGKMKDTGNYVFFAVNSGHKNYELIQNVVNSQSYVGEYALKDYPISEKEILSKDREAWDASLSTIAVCKYNLGWASIGICTHSFYEALNHASKRKLFNRNVTDFSQIKQMFVDAYCRLFSMKLFAARAKDYMRSASATDRRYLLFNPMVKMKVTMQGEEVINLLWDVIAAKGFEKNMYFEMAAKDIRGLPKLEGTAHVNMALIIKFMNNYFFEPNSSLPVVPKIDDFKNDDFLFNQGTTSKGFEKITFRDYNEVYSNIDLPNVQIFRKQIAVLKEFLKSTPPDSKQSKDLDFMLILGELFTLVAYGQLLIENAAIEKVDNDLLDQIFDFMVRDCSKYALQLYSKRSSTKEQMEKCLAMIFKPAENEELFNRVCAKVYSYKDAYEMAP
>NZ_CP006723.1|WP_154232735.1|1224821_1224977_+|hypothetical-protein
MMKIQRDSSESESFERINLISFLERIESMKLILTYGLKYEISSKMEDFGFF
>NZ_CP006723.1|WP_002102063.1|1224187_1224874_-|DNA-alkylation-repair-enzyme
MILSKLSDSDESLWIFIIESELLKKKIKFPLLEFVGKELYFKIPEMNQIYFTDQIIKLGHMGSYVISAIILQLRMEKHFEQSLNKAVEYILLGNEWYVCDIIGERIMGYFLLKEPEKTLPILKNYINDKNGWIVRSVGVASHYAVKKGLGKKYVEVTFYLLLSKTDTKDFHTKKGIGWALKTISKFYPDVIQKFESNLLANPSIQPFFRKKIEIGLSRSSKYGSKYSD
>NZ_CP006723.1|WP_000079210.1|1223307_1224210_-|radical-SAM-protein
MAQSIRIKNILNKTKRRDPWFLDDYTINPYSGCSFRCLYCYVKGSKYGLNVEDKLSIKENAVEILDKQLSNLAKKNRHGIIVLSSATDPYLQLEKERGLTRELLKIILKYKFPVHILTKSDLILRDLDLLSEIEKNAILPVDLQNQLSRKSFITFSFSILDDSIAKIFEPGATSPSLRISALKETLKEGFFSGVSLMPLLPHISDTGENLEFMFQTFQEIGIRYIFPASLTLFGGNDPLDHKNLIFKAIENHFPHLLSKYQKFFSKNFRMPNFYQNALYHKTSELCSKYGLQKGILTTEF
>NZ_CP006723.1|WP_000421034.1|1220960_1221980_+|4-phosphoerythronate-dehydrogenase
MELKKPILYYPEGTIGAKEIFSSFEKLEVRSYPNDQIREISRDEPTILIANTRFQVNRDNIQNFPTVKIFATVSSGTDHVDFNALKEFKKIFLNAPGCNAGSVAEYCFAGLLNRFKESELKGLKIGLVGHGHTGKEFYKILISKGVNCIFYDPFYKTESRPLSEVLDASVLSFHVPLTKDGPEPTFRFVSTSLIDSLKSGTIFINTSRGEILSREAFNRLIARNDIFKILDVFDPEPPTLEMGRKLSEVKHSILTPHVAGYSQLGRIGGTYRVAEKLSILYQDKPLPPLNFFLQTSGEFKTSTFLKEEDRLLREAWRNGDTNYFEKRRNTYPIRLDWDF
>NZ_CP006723.1|WP_000854849.1|1219839_1220874_-|hypothetical-protein
MKTLQQKITFPILVGLISVTLIMLIWFVFFSGSKITTSSSASLDPESSSGSEGWILNQAIINTSRKIFDENGNWLSFDELIQYASNGEINLISELSDLRRQCPENIHYEQCNEIIRAFIADHYFGKDAEYLMKLFSSYLKYETKMKELEISDKLSRAEKYELIKKQRREFFSDKDTKLIFGLEEAEETYLDSLGGFLKDTETLSGEQRMQKYEEFRKNVYGQYYNTIKKREPKYNTYETEMFLREKELERMSSSERNSKTRHIREKYFGKDGADRMETVYQESEEKEKKEKQTAQEESDWIRKNPNVKVETKEKALMEIRIKNLGKEEAEEYSRRLKYEEEIKK
>NZ_CP006723.1|WP_082268235.1|1219675_1219828_+|hypothetical-protein
MREKNKKIQEIDANTPAEKNENGESPNTVPIPIPKHSISRYNIESLEIKL
>NZ_CP006723.1|WP_000508810.1|1229735_1230905_+|DUF1577-domain-containing-protein
MGGIKLKERDLDVINSPEQRKHIIEKHLLNQSLRIKGDLNRETITIQRYVDSGEKIIAGISDETHFSENDEIVLYKILAKYVQLECSFIRKTRPGVAEFSVNKVSIAKSNRAFPRYSVAEDAAHVTNINSSKTVIDASLFNIPTLVKVSFEDYKTKLKPDQLGLVEIDVFRSDQDEKFELIKRTKKYIHIENTSLEESYKSKSENQVDVEDEIHEEIPSLMRKYKDEKIVSEIIYPIIYINHSRQSIPLGYIWVRNKEKTLGNNTIEKLAELSKEMVARIKESNTVLTTEKFPIIDISNNGICIKITEPHLIQTLPKHTGFVFDIYIRMQGYFKVFGAIRWLSYDEVGSLILGMELVAKSSFPGEREKFHRNVELLGQGKFTGLKTHAI
>NZ_CP006723.1|WP_138984322.1|1231174_1232316_+|IS3-like-element-IS1501-family-transposase
MKGRRKYSPEFREQAVNRTLNGSFTIKEVAESLGVSYFVLRQWKAEHLKKKETEQPLPDKQLKESEELKRLRKENVRLKDENANLKKVCGHAFPRTESRLKFMKSNCLEHSIGSMARVLGVSRSGYYKYLNRHKDRSVAPDLTNFLQEKWLKSRKNYGFKRLFQEVKKSNLPYGARKVRKAMKHCKISGKQRKQFRPLTTNSKHGGRIAPDLVQRKFHPNEQNRIWVSDVTFIRTSFGWSYLCVILDLYSRKTVGWSLSDRNDSQLVCDTVLKAVLSRNPRKGLIFHSDRGSNFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLKREIEYNTFYNIEEAEHLLFDFIEVYYNRFRFHSTLGYMSPEEFETNIA
>NZ_CP006723.1|WP_000196651.1|1232596_1233370_+|outer-membrane-lipoprotein-carrier-protein-LolA
MTRFPRHLILVKKIPGDPVFLMKKTIILSFFILFLALEPSLLAQPAHNWNSPSEVVKQVKKKFSDLNSYKADFQIQTVSNKKSKNMKGVCLYKKGGRIRYQFNEPSGDEIVSDGKTLYIYIARLNAVGKQDLTLNKSNKSGPIFSNFTDEGLSRIFRKYHYKFDSIEQPQTSSKDGRKYFVLNLEQREKIGGFETMLLYVDAQTYFIQKAVASDGRGKETTIEFSNLEINPDLEDGQFNFHIGGNAKIINNPLVSEQ
>NZ_CP006723.1|WP_001072287.1|1233391_1234507_+|helix-turn-helix-domain-containing-protein
MNQKRVGQILREAREEKKLSVKDVARETNISVKYILALETEDYSQFPGETFTMGFLKNYGGYLKLDTGQLINLYRGEKIEESQAPLEELTRPTASYYTKINVDKNKIFTIASVLIILISAYLIIDSFIGPSSDEDSVEESGKKLDIPENIDFLSRSIPENRSESFILTPDKGVSFSVSNQQCKLFIDSVEKGGAVNTAVLAFNVYPELTVYKFRLSEGQEKILSYTIPEISSLRRNVRIISQAVTENSAKVLVTLSDEEQKQENNNSVDNTKTLGDVPIQVTLFFNKPSYAEFIIDGQMGFRGLVQTGETRSLEAKDRLELKVGDGSAVEMIQNGKPKITLGRPGKLVKKIFVKTQNPYDSTQSIIKELGE
>NZ_CP006723.1|WP_000358329.1|1234515_1235829_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MDKKFYITTLGCPKNIADSMSMHHSLLEEGFTPASLPEESDFHFINTCTFIQSATEETIQTILSAAQVKKQNHQKLVVVGCFAERYPDNIHSEIPEVDLFFGTGKYSQAGKILREKFPELSPSQLEFNDSLLERWKLSSKIENYSKPYAYVKVSDGCNRGCSFCIIPSFRGKFVESPLDDILRDTNRAIRAGAKEICLVSQDTVYYGRDSEILLDMVRKVAEIDSLEILRLLYLYPDKKTEKLIRLMGETSKIAPYLESPLQHVSSKILKVMNRTGESSYFKDLFSLAREVKPGLEIRTSFIIGYPGEEPEDVDQILRFIEDTRPEKVNLFSYSPQEGTKGAQLKQTVSEKEKSKRINLIRDSHLEILEEIHESRIGRTYDAIVDGIEDGQVVVRRFQDAPEMDEVVYVDDVSLLPGRIGKVRIDSFYEYDMNGTWV
>NZ_CP006723.1|WP_001045091.1|1235825_1236572_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MNKVIFNIPNILTMLRVAAVPFFVWFLFQKELEYHIAALILFSVASLTDLIDGYLARKWNQETEFGKFLDPLADKIIVTGCFITFIFLQEQIEFWMVCLIIGRDMLITSLRYLAIRQGQSIRTTMLGKVKTVFQMGAIVLILVFFILISSKKRILINQAYATGKANGLTVFEFATNNAIQFFRNLDQNNGLGDVVFGLGTFVPYWGMLVTTTITVISGIRYLVSNSKVLYPSNLKGMFQKNGTKSSRS
>NZ_CP006723.1|WP_000433680.1|1236546_1237557_+|anthranilate-phosphoribosyltransferase
MEPRAAVLKLIEHKHLTALEAESFMNHVMKGEVSEILLSSFLTAMRFNGESVEEVLGCTLALRKNALRPKTVFPFDLLDTCGTGGDGQGTINISTLSAIVLASLGIKVAKHGNRSVSSHTGSSDILTRLGYQTETTQEEVEAHLVNRGFTFLFAPMWHPSMKHAGPVRKELGFRTVFNMIGPLSNPFSPQFQIIGVYQPELMELFIKVLQSLGLKRALVCHSRDGLDEFSIFQITDYTFLENGVISRHSFDPKILGLSSLNKEEVYASSSDHAEVLARKVLNSESIAGTHAVALNAGAGLFVMGKIDTIEQGYQIAKEAILSGKTKKYFEDLISKE
>NZ_CP006723.1|WP_000141830.1|1237612_1237939_+|preprotein-translocase-subunit-YajC
MTFDILLQLAQAAGEGDKSPFSTLLLIPIMLVIMYFLVIRPQRNEEKKRKEMIDSLKKGDEVVTSSGIHGKVVEIKDNNEVVVLNIAKDTNVSFTASTVLKKKQQADK
>NZ_CP006723.1|WP_000723997.1|1237935_1238682_+|hypothetical-protein
MKKISILILIFLFLGNLALFSQDGEEIDFLEKVTEPKKTVSKKSSNTAGASSGTSTPKKKEKKRSKKKRSKKSSSSIPNNLEETQKKNVIPNTNETSSGNNNSNLNGSNSGSSNTLESGNVDEQRVSASKMDLRDLPKPYWVNEEVQIHPNNLPGYTVSQKSEQGSSFGSGLSEILKLGEDKKKEENKKKVQEVQKSGSFTGFISEYKKPIIIIVFILLFALYRLKAGKSRGSSSRKSPVTINKMRRD
>NZ_CP006723.1|WP_000833715.1|1238692_1240621_+|protein-translocase-subunit-SecD
MKSATWIFLPLLIILAATVILYPNFATRELELAVRKEFISISPEQKKAILSRFEERWNREYKQSDWVISPSPSELKDESFLLVKGRFITSAKINQISQENPELILEAKNKLRPTLVEEWITKGRPLTIKLGLDLQGGMRVAMKGDFEDYASKLRESYIKEIENLNKTVTDPSADEKEKKKAKDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGVTNSSQILEIIQNTETVEYRLEEPENSAGNGLTYASIIQQEENRLLELKRREETDIVQYQNIIKQKLGKAEQDKFLQGLEEKYKIPRDRYRVFAYWARGNHQNSTLLPRKFVVLEKAIALDGRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNKGRNLAIVWGDKVVSAPTIRSAIAGGVAQIDGSFTKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLIGFVLVMFYMILIYRLSGLVANAALFANIVILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEELRAGKSATVAVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIITSLFTSLFLSRLVMDLLVNRLGVQKLQLGFKKLES

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Crispr_ID: NZ_CP006723_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_2

1480232-1480345

Orphan

Consensus_repeat	Method
TGAAATCTGTAGGAACTCCCACAAATCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006723_2

>merge|NZ_CP006723|2|1480232-1480345|CRISPRCasFinder
TGAAATCTGTAGGAACTCCCACAAATCTGGTTGTAACAAGTTTGATTTTGGAACTACTGCAAACCTGGTTGTAACAGTTCGATTTTGAAATCTGTAGGAACTCCCACAAATCTG

>NZ_CP006723|2|2|1480232-1480345|CRISPRCasFinder
TGAAATCTGTAGGAACTCCCACAAATCTG	GTTGTAACAAGTTTGATTTTGGAACTACTGCAAACCTGGTTGTAACAGTTCGATTT
TGAAATCTGTAGGAACTCCCACAAATCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000749834.1\|1479672_1480044_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000405144.1\|1496364_1497693_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP006723.1\|WP_000808860.1\|1465643_1465826_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000862863.1\|1492138_1492390_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_045191789.1\|1489840_1491766_+\|DUF1561-domain-containing-protein	unknown	unknown	gnl\|CDD\|284921
NZ_CP006723.1\|WP_000412103.1\|1472763_1474158_-\|glycine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235240
NZ_CP006723.1\|WP_000734588.1\|1494089_1495262_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_002112871.1\|1481289_1484244_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|274598
NZ_CP006723.1\|WP_000922529.1\|1480697_1481276_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275248
NZ_CP006723.1\|WP_000534018.1\|1486973_1488857_+\|DUF1561-domain-containing-protein	unknown	unknown	gnl\|CDD\|284921
NZ_CP006723.1\|WP_000007162.1\|1475943_1476696_+\|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|379143
NZ_CP006723.1\|WP_001087207.1\|1484250_1484907_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225410
NZ_CP006723.1\|WP_002089551.1\|1474324_1475947_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP006723.1\|WP_001270447.1\|1476692_1477595_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|225173
NZ_CP006723.1\|WP_000869789.1\|1467781_1468963_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|153233
NZ_CP006723.1\|WP_045191774.1\|1466216_1467428_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP006723.1\|WP_000683572.1\|1477599_1478586_+\|adenosine-kinase	unknown	unknown	gnl\|CDD\|238573
NZ_CP006723.1\|WP_001160150.1\|1498319_1499567_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP006723.1\|WP_000751594.1\|1469771_1470692_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000862513.1\|1493877_1494078_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000405144.1\|1496364_1497693_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	5.56934e-32
NZ_CP006723.1\|WP_045191789.1\|1489840_1491766_+\|DUF1561-domain-containing-protein	gnl\|CDD\|284921	pfam07598, DUF1561, Protein of unknown function (DUF1561). A family of paralogous proteins in Leptospira interrogans.	0
NZ_CP006723.1\|WP_002112871.1\|1481289_1484244_-\|MMPL-family-transporter	gnl\|CDD\|274598	TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.	1.09963e-33
NZ_CP006723.1\|WP_000922529.1\|1480697_1481276_-\|hypothetical-protein	gnl\|CDD\|275248	TIGR04455, hypothetical_protein_LEP1GSC192_0546, probable lipoprotein, LA_1396/MXAN_6521 family. Members of this family are predicted lipoproteins, near 200 residues in length, found in multiple species of Leptospira (a spirochete) but also in the Myxococcales branch of the Deltaproteobacteria (Myxococcus xanthus, Chondromyces apiculatus, Cystobacter fuscus, Corallococcus coralloides), an uncommon mix of species. In both lineages, the N-terminal region appears to be a lipoprotein signal peptide.	9.64571e-102
NZ_CP006723.1\|WP_000534018.1\|1486973_1488857_+\|DUF1561-domain-containing-protein	gnl\|CDD\|284921	pfam07598, DUF1561, Protein of unknown function (DUF1561). A family of paralogous proteins in Leptospira interrogans.	0
NZ_CP006723.1\|WP_000007162.1\|1475943_1476696_+\|PrsW-family-intramembrane-metalloprotease	gnl\|CDD\|379143	pfam13367, PrsW-protease, Protease prsW family. This is a family of putative peptidases, possibly belonging to the MEROPS M79 family. PrsW, appears to be a member of a widespread family of membrane proteins that includes at least one previously known protease. PrsW appears to be responsible for Site-1 cleavage of the RsiW anti-sigma factor, the cognate anti-sigma factor, and it senses antimicrobial peptides that damage the cell membrane and other agents that cause cell envelope stress, The three acidic residues, E75, E76 and E95 in Aflv_1074, appear to be crucial since their mutation to alanine renders the protein inactive. Based on predictions of the bioinformatics programme TMHMM it is likely that these residues are located on the extracytoplasmic face of PrsW placing them in a position to act as a sensor for cell envelope stress.	2.29276e-10
NZ_CP006723.1\|WP_001087207.1\|1484250_1484907_-\|hypothetical-protein	gnl\|CDD\|225410	COG2854, Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism].	0.00040863
NZ_CP006723.1\|WP_002089551.1\|1474324_1475947_+\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	4.19235e-05
NZ_CP006723.1\|WP_001270447.1\|1476692_1477595_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|225173	COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].	1.11528e-45
NZ_CP006723.1\|WP_000869789.1\|1467781_1468963_+\|transcriptional-regulator	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	4.89559e-29
NZ_CP006723.1\|WP_045191774.1\|1466216_1467428_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	6.77859e-35
NZ_CP006723.1\|WP_000683572.1\|1477599_1478586_+\|adenosine-kinase	gnl\|CDD\|238573	cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway. .	1.41323e-126
NZ_CP006723.1\|WP_001160150.1\|1498319_1499567_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP006723.1\|WP_000412103.1\|1472763_1474158_-\|glycine--tRNA-ligase	gnl\|CDD\|235240	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.	0

>NZ_CP006723.1|WP_000749834.1|1479672_1480044_-|hypothetical-protein
MKKSTFYIFLFFGFILTNLIWYGYYSSMELKNDYHITESCEYSNLLKLREDFPKGMAISEFIKKCNRDNSLECTKSSSSKKKNIQYQVSVIPSCPHSGRPDCGFYFRFRNERLVKVEAGYPCH
>NZ_CP006723.1|WP_000683572.1|1477599_1478586_+|adenosine-kinase
MKHYDVFGVGNALVDILVPTENVFIKRLGFEKGIMTLVDSEKQAEVLTALEGSKKELRSGGSAANTMIALANSGGTGTYTGKVSKDTYGEFYKKDMENAGILFEVAPEDKGHTGTCVVLTTPDAERTMLTHLGISITLQKSDVDLEKLKSSSISYIEGYLWDGQGTKEASLLTMEESKKNGVKVAYTYSDPFCVNRSREDFIRLTKEYFDIVFCNTEEAKALSQREDKLEALKFISGLSALVFMTDSANGAYFAEDGKISHVDGFPVKPIDTTGAGDCFAAGVLYGITHGFSLEKSTRWGNYVASRIVQEVGPRLGIKLMGRQDEILK
>NZ_CP006723.1|WP_001270447.1|1476692_1477595_+|50S-ribosomal-protein-L11-methyltransferase
MRYREIILSIPKEIAEDFTSFLDEVGVVGYYEILFDREVPRAPDEEIISDDTKFRVYLAEEDKENETKILIFLKATAGESFFLESRWIETKEYEEAYKEFYKPFIIGSYRVIPTWEKDTALGTTPEGIFPLLVNPGLAFGTGHHETTRLVLGRMGDLNLSAKRIADVGTGSGILSLAAAKSGASLILAIDVDPNSVRSASFNRDENEISSEVLVVEEGGFDHKKIQEQTWDLLIANITFAVLKANIQKIASIKTDHFLFSGVITERKEEFLELLKNTVGGEGVFFREDTGWELIEWKRKG
>NZ_CP006723.1|WP_000007162.1|1475943_1476696_+|PrsW-family-intramembrane-metalloprotease
MSFDVALLGFLSVLPWGFFLILLFPGKNTPQRILLILLALFLGYLSTEIVLKLHPIFWPDVKIPKRSGHILTQTAHIAFIQAGMMEEFCKGILILASGLLFAFDWKTYTFKKEMVLIGGFVALGFAGIENANYIFSAKEEDRISMFVGRTIRSSNAHFLINLCFALAFVKSNQKETKERPLALFLAFLLAVSQHGLFNFFVLPQSRFGSWLSMALFVGIWVWIVKDFRTFILENENLNDAPVDAEILDES
>NZ_CP006723.1|WP_002089551.1|1474324_1475947_+|energy-transducer-TonB
MSWSSPFLGLGIFFPLGVLFAFPKGREVRSSAFGSLLFQIACWVVLYPLEVSAILFPTVEAFVRTFVMNLREWLIGFYVLVGFVILVSHSYFLKKQRERLSKRSLSVLIPEEKIERIHYKILVLFVAGYLTSKLVFQDSYRLEYGQIGILEDSFLYFFSVLIAGDTLLSRGKQFFLFRRPWKLFEKQTRIARYSGFQGKWGLLKQKNAKLRDWIFPGWGHIYIGNLWKGFSILFLYLLLLLFLATSFFSWLEPADGIRFLMSMGLKPGIRDQTFFKITSSVIPILIFLGGIAVVHIISKFLLGRSFRSEPDDLTPKSTFISNLSYSILLHLILISLILIIPVTLQRKNKQKESERQRTHFTPENLEFYFIDPNLPNEVKGLNGGVVSGTETPTQKEGEKVPEDKPAEEGRVKGKVKQVRGKKLPATYSNYISAKMRGPESFMEYWRRAPKNYSSVVAYTVTPDGEVVDVDLVEASDYPEQDQMTLELIESLSPLMPPPGTKGYVRVTELFWNGSIDPNAMPTPLQKELVTMYDGRYMEEL
>NZ_CP006723.1|WP_000412103.1|1472763_1474158_-|glycine--tRNA-ligase
MEKKESLDSSLKEIVSVCKRRGFVYPGSEIYGGLSNTFDYGPYGVELLQNLKQLWWKYFVHLREDIVGLDSSILLNPKVWEASGHVSNFNDPLIDCKNCKTRIRADKFLEDQKGEGFATGLTLEKMNQVIKESNFACPNCGQRGTFTEARDFNLMFKTSHGASAEDSLDIYLRPETAQGIFLNFKNVVSTTRRKIPFGIAQIGKSFRNEIMARQFVFRTREFEQMEMEFFCEPGTQKEWFSHWVNYCMNWLTEQVGIKKENLRVREHEKEELSFYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFSGEDLKYQDQVQNKKYVPFVVEPALGVNRLFLAVVTDAYEEEKLPDGETRTVLRFSPKIAPVKAAVFPLMKKDGLPEKSREIFADLSKLGNIEYDDGGAIGKRYRRQDEIGTPFCITVDYDTLKDNTVTVRERDSMSQERIIVSQLKNWLFERL
>NZ_CP006723.1|WP_000751594.1|1469771_1470692_-|hypothetical-protein
MKKTKYILILLYTIVLIDCGKNLKGKPVPPNPNLAGFYISSETQRWAEDDKMKIEVLSIFPKSNGELYFERKTIVRLSFIASENREEWRIRTGGVVTGENEILLQESLYQEFHQPHLGTRESNPKLWKLNEMGTPSKVREVGNVALSSSVLGEISPDGRTLIFSNILFTKIGDSFQGRITTNINQKSVTVDNEIAGAVFYKTKEGIVSIFSKTETIKPGMIFFVGKDQIPCKIVEIFQQSGILEPIDGKKNFQVSAGDPVILKGNVDKKAINKRTAADELIQKIKSDPNVNKEELIREIEKLKRER
>NZ_CP006723.1|WP_000869789.1|1467781_1468963_+|transcriptional-regulator
MKVVQIKLSFISRKFQKYSKIIMLILICFVCVLYDSLSGETKKPAYSTEDLSKSQYKSEKIPVYQNRFGRTRPVVAVIGDNYMTELTDYVVPYGVLTRSKSAEVFAVGISLTPISFYPALKIFPQESISSFDKKFSTGADYVIVPAIHHSENPILLEWLNLQASKGATIIGVCDGVWVLANAGLLKGKRATGFWYSLDDLEKKFKDTTWVRNRRYVVDQGIVTTTAVTASIPVSLALVEAIAGKDRAFNVAVELGVQDWSPVHDSNRFRLTMSSVYTVVSNFLSFWSYEKIGIPVMAGVDEIKLALVADAYSRTYRSQAFSIAKSEETILTSNGLRLIPDIVFGSTTSLSRILPVFDSTPAVITLDQTLLKIGEIYGRSTADFVAIILEYPYF
>NZ_CP006723.1|WP_045191774.1|1466216_1467428_+|acyltransferase
MKAFIKGLWYHREDEIQSLNGLRAFAIILVILNHYALVWKKPGTFQSDSLFWSGVDLSFVLSGFLISKSLLSDWTRNATIDFKKFYLKRTLRIFPAYYVFITFSWVASKLTLKIAEAKGLEKEAYYFSFKLSDAWGDFVFLGNYFPGINIHTWSLSIEEQFYLIFPLFCSLILFKMSSKYRQLLLWSLLLVPTISRVIVYMTTPLPLTPEYFNEIYFPFHTRFDSLVIGVIVMDLYMNQKGLINRLKTNPILYYLLLFLFFSFLCISHWANINMESFFTHTFKYNLLNIGFAGILLCAVVRSEGLLGRFLSLKIFVPIARLSFTIYLWHLVLIAVSVSILKIRTEPSSMFELLFQFIFVLTLILLLSVPFYLLFEYPFQYLRTRILPKRRSHKQLLSVQPKSF
>NZ_CP006723.1|WP_000808860.1|1465643_1465826_+|hypothetical-protein
MKQFRFFVIAFFLKKFVFSKFQYLRFSFLILFHKFEKNFRSTSFFNLFYYFRIYFYFIDL
>NZ_CP006723.1|WP_000922529.1|1480697_1481276_-|hypothetical-protein
MLKYSLLFFSIIFITMNCTVKYVKTGPTWEKDLNTFKRIVVSVPSESEVGNPEKQLAAKITENYLSHHKEFIIYPFRSGNGICGSSDKKVQAIFQLKIREKQTSDKVELSALGKVLKCSKGEVLWEALAENSYSKNTEENQSLINTYTQLYGKEIASKVNPYFFLLQSLLDKLDSPILTEEEKDEKIEVEAR
>NZ_CP006723.1|WP_002112871.1|1481289_1484244_-|MMPL-family-transporter
MKQFLSRITDSILLNPIRSCSILFVLLLLSFWQASKLTVNSNNLDLLPKNNPSVVKTQKVIEMIGGNGFYILSIKFKDEKGMTDHLVKAFVARKKGQPEIAEKELKEAEKIKQQNVSYYKERENAIKKASDILNERLLKEKKFVQYISYRYNVSFLQDRLPLFLKTEDLIEVRKRVKRKIDEEVERANPFFIKLSNEEYNPDFNDILSKYQKLAKRDIFDEYNISPDKGMLIFLIKPAGSFTNIEFNIALDKKIKEIVADLGLDKNGIQVGYTGTYRLHLDDYETLMAALKPIAITSFIGIALLLLFFFRNPLFILILLISLLSGILFSFGLTTIVIGQLNSVTSIIASILMGLGIDYGIQFLYRFREEFTREQNTLRSIKDTIYHTGIASFISALTTTSAFVVLAFSEFRGFSEFGIIATYGILIIAISMYGVTALQITLLFRLFPSIKSKFLLSVKEQSTSPFLYRFYKKPGLLTLVVIIVVLMISFFNFSPGIQFNYNGRDLMVDNLDSVNLYDEIGDRFDISSDPQVIVVDTLEESEAVFDYMTPVPDEIAGSVDQVVSLWNFVPPKGQQRANLKILKQLQSDMKPVKASFLKPEQRKYLPVVKKYLNVKEYSLSEVPIYFSSQFTEVKGSKEKGHLVFIYPKVALWHGQKLLKFFDAVGELHYPKLSRRVLNTLLYDSNGHTAVNPTRDKWTQNEKRLIVNSLNTYSASQFKNLGLLDATISFILETRPFSSLEQARSHKYISNTAGSLILFANLIKIVQREGVIAFLSTLVLVVIVLILFFRGIVPALISLIPLVLGIFVTLGIMAAFRIQLNFMNVLVFPVIIGYGIQNGIYIYYRFREDHDVIRAMAMVGPAIIASTLTTLVGWSSLLIADQKGLKSIGIVASIGIGSSLIIALTLVPAVLEIVYRSRKEEEKESKPVGFDQAEANSSGNLLFASKTKTAENLKTETIENSKTATSKKKSVKKKRTVSKKSIQKKK
>NZ_CP006723.1|WP_001087207.1|1484250_1484907_-|hypothetical-protein
MNSLRHKLQSIKAPIVKKIIFILFVLSLLIPSLIAQTSTENSTSPETGNVPATTETAPSDEEQIVSTVKKLIGFIRYKKNDKAIALIYVKQFSNQLLKSSGKIGESDRKEFEEAISEFIIHRSFPIAHKYFDKIDINYEKPILKGDNATLASSIIWNGSERITFSWILMKIEGSWYVTDFLNEGKYASETNRVKSIDPSIKKNGVKQTIALIKKEAKN
>NZ_CP006723.1|WP_000534018.1|1486973_1488857_+|DUF1561-domain-containing-protein
MGRWIVLRVSLLVLIGIGFEYGINHTSINASSKSDYSIAQKPADQPKDKSIQVVMHGGSNYCYSPVFTKGEGYIWIDYCSDNTAKARYDVFQRISYNINNTWLCITAPETVVKGEETWNYVNLRPCTINDPLQRWIVKDNSFWTANGRYRLKDTNWYGYISRNSGDRYDHTLDSSMDDWIKTVAIPGNISIQTSIAWDLQTTEGNERYFIRWGSSNKNTTPLYYNPESGHIAQYDPSSGLLNCMYSKMTDKYDWNWVKWGKCSDAPIKKDNPAFWNVFFETDKEGAITDYKGNVLRVTRYGLNWGVAYTVKPSYLEKDTTHSPTSLFVIDKDLLDWTRYTYSNLGKTDQYCPAGNKESLVRKRVKRNLNLPSDFQLTREWIQRLYEIARSSISRAIPCRGVCGVCMLHSYQMIAELLEYHSRGPLTGGGYFFDTAPNRDPFISFNQRYPQLNTLLTNVPSYANRPGFGSTLVMLPQYEWTSSDTITTRSGRLLHARSLINSPPGSIWLGLLRGRDADGSTWGHAVPILRTSQGIVVIPTNSPTMSLNTYIRSLAPTMDPNEVINRLENGSTLTELTTIQPVRIYDIPFSLTVSTRDCTGDGDGRRGSGRYPTSSLINQCSGGRCILQ
>NZ_CP006723.1|WP_045191789.1|1489840_1491766_+|DUF1561-domain-containing-protein
MGNWKNLVVVLLVSIGVGFGYHTLIHASSSKANYSIAQKPTDPPKDKPINIVTHDGKTYCYSPVFSKGEGYVWIEKCGDNTAKARYDVFQRISYNINNTWLCITAPEPVVKGNARWGYVNLRPCTINDPLQRWIVKENSFWTADGKYRLKDTNWYGYISKTSGDNYNHTLNSSMDNWVKTVATPGNLSIRTSISWNSGWGDGIWDINMAPSAYFIHSKGSSKEDIIPLYYNPESGHIAQYDPSSGLLSCMYSKMTDKYDWNWVQWGKCSDAPIKKENPAFWNVYFVANAGGMITDYKGNILRVTKEGPNWGVAYTVKPSYLEKDTTHSPTSVFTVDVDLLKWIRYTTSNLGKTDQYCPAGKKESRIYQRVKRNLPSDFQLSVAWAQRLYDIARSATFESANPGAIPQRHGACGVCLLHSFQMIAELMEYHSREPLTSGGYFFNTASNRDPFLSFSQRYPELDRLVTNVPVDYANRGRVLAFASAMIMLPQYEWESSSPLTTRSDIQSHIRSLINSPPGSIWLGLLRRQRANGSISGHAVPILRTSEGLVVIPTNMPTASLNTYIQSLAPTMDPNEVINRLENGRTLTTLTTIRPVGTYETPFSLTVSSRDCTGDGDDRRGSGRYPISSLINQCSGGRCILQ
>NZ_CP006723.1|WP_000862863.1|1492138_1492390_+|hypothetical-protein
MKVHKLSNVTVFVETTVLKISKELSRKFFEVLGHAVTTRTHENNTKLLTAEFTKKIVILKKYCKFGIYCILKQDQNIQIFETI
>NZ_CP006723.1|WP_000862513.1|1493877_1494078_+|hypothetical-protein
MKVFRNLFSAGILAVVLMSFLFIGTCKKKEDDDNQTNAILLWLATRPYVEQSKTGFFIIVPKGIAE
>NZ_CP006723.1|WP_000734588.1|1494089_1495262_+|hypothetical-protein
MKKLLFLFALVVFLGLGLSFRSDRVPFFVREDSPKPFPIRLELLQPLKANADNWGFVRQSATWARGNSLFMDELIAGIRKTFPAGSTANITLANQNFNGQSYTLRLKLNSGNVSYQPSTLGSAASYTNFFELRSSSDNQPALQLFFDDDPRNASGDGAVLVYQLSRLDPTQWAGATAIIESYVVQPVITGFSNQGLIQTYSWKGPLGADALGQDVDTGRVILEEMDNRTVFCFKSVVSFHGTTDLVPINAGTQALGYGHNQGLCPGAGKEYYKLAYSQKLDGSLNVTAKAGLEQTTITSGQAITCNSTVSQFVNFTPAYGLFNFNGFVSEGVAANAIPSDFIQATRVDGLYDRVGTVGKSSATTSPTVSSWDTLTKAYIDSITISFANVP
>NZ_CP006723.1|WP_000405144.1|1496364_1497693_-|sterol-desaturase-family-protein
MEINLVTIAIPFFFLLIFLEIGFSVYHKRKLYRLNDSINDLSTGTASQVVGVFSKVVTLAAYIYIYQNFRIFNLPSWPSEALSIFPNGILGLSSYTWAWIFVVAVWIFCFIGYDLAYYWVHRLSHEINFLWAGHVVHHQSEEYNLTVALRQASFHGLFTWVFYLPLALIGFSPVVMILNGQLNLIYQFWIHTKAINKFPRWFEAIFNTPSHHRVHHGINPQYIDKNHGGTLIVFDKWFGTFEPELEEPVYGTVKPLRSFNPIWANLHYWWEMIELARNCSRWSDKFKVFFAVPGWRPKELGGQYPIPEVSTKTFHKFDIDLPKGLSLYSLVWFIISVVLTFGMLVKVQSLPWFNIGVISFVSLISLLTIGGILEKKRWALFVEPIRLVILVGAAYLLSAEMSITLGTIALSVISTIWFFTYRTYFVLSQEINPVGEILRRTA
>NZ_CP006723.1|WP_001160150.1|1498319_1499567_-|serine-hydroxymethyltransferase
MQFLPKADPEIFAALKKEDERQENNLEMIASENFVSRAVLEAYTSTLTNKYAEGYPGKRYYNGCHNADVVETLAIERAKKLFGSQYANVQPHSGAQANMAVFLACLEPGDSFLGMNLAHGGHLTHGSPVNVSGKIYKPIPYGVDSKTETINYDEVAKLAREHKPKLIVAGASAYARTIDFSKFAEIAKEVGAKLMADIAHISGLVATGYHPSPIGMFDFVTTTTHKTLRGPRGGLILSTLENEKVLNSRVFPGIQGGPLMHVIAAKAVAFQEALQPDYKKYIETVLANAKTLAEVFVKRGYRVVSGGTDNHLVLLDVSVKGLTGAQAADGLDEVGVTVNKNAIPFDKNPPAVASGIRLGTPALTTRGLKPADMETVGNLICDFLDHPNDDKNRTKVKGGIQEMTQKFPMNQFRLD

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Crispr_ID: NZ_CP006723_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_3

1765159-1765259

Orphan

Consensus_repeat	Method
GAGTTCCCACAATTTACACGAGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006723_3

>merge|NZ_CP006723|3|1765159-1765259|CRISPRCasFinder
GAGTTCCCACAATTTACACGAGATCAAAAATCTTATGGGAGTTCCCACAATTTACACGAGATCAAAAATCTTATGGGAGTTCCCACAATTTACACAAGATC

>NZ_CP006723|3|3|1765159-1765259|CRISPRCasFinder
GAGTTCCCACAATTTACACGAGATC	AAAAATCTTATGGGAGTTCCCACAATTTACACGAGATCAAAAATCTTATGG
GAGTTCCCACAATTTACACAAGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_001053201.1\|1771249_1771726_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001239630.1\|1774673_1775027_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000418455.1\|1775072_1776125_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000371638.1\|1770331_1771246_+\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|349758
NZ_CP006723.1\|WP_000535110.1\|1772679_1774665_+\|FapA-family-protein	unknown	unknown	gnl\|CDD\|377177
NZ_CP006723.1\|WP_000412863.1\|1766853_1768971_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|376386
NZ_CP006723.1\|WP_000039671.1\|1771853_1772654_+\|RNA-polymerase-sigma-factor-WhiG	unknown	unknown	gnl\|CDD\|235770
NZ_CP006723.1\|WP_000137385.1\|1763858_1764122_+\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP006723.1\|WP_000938821.1\|1757660_1759886_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|234591
NZ_CP006723.1\|WP_000077420.1\|1776124_1776406_+\|DUF370-domain-containing-protein	unknown	unknown	gnl\|CDD\|179823
NZ_CP006723.1\|WP_045191947.1\|1762204_1763026_+\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|274610
NZ_CP006723.1\|WP_001202903.1\|1756731_1757598_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000922655.1\|1763106_1763862_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP006723.1\|WP_080010664.1\|1776402_1776984_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|173199
NZ_CP006723.1\|WP_000393529.1\|1769023_1770304_+\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|183703
NZ_CP006723.1\|WP_000167663.1\|1754394_1755180_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP006723.1\|WP_000503776.1\|1761143_1762208_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|236154
NZ_CP006723.1\|WP_001162081.1\|1755186_1756383_+\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP006723.1\|WP_000057944.1\|1760249_1760576_+\|DUF971-domain-containing-protein	unknown	unknown	gnl\|CDD\|377616
NZ_CP006723.1\|WP_000455610.1\|1764128_1764908_+\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|376520

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000371638.1\|1770331_1771246_+\|MinD/ParA-family-protein	gnl\|CDD\|349758	cd02038, FlhG-like, MinD-like ATPase FlhG. FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.	5.98389e-100
NZ_CP006723.1\|WP_000535110.1\|1772679_1774665_+\|FapA-family-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	1.04939e-140
NZ_CP006723.1\|WP_000412863.1\|1766853_1768971_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|376386	pfam00771, FHIPEP, FHIPEP family.	0
NZ_CP006723.1\|WP_000039671.1\|1771853_1772654_+\|RNA-polymerase-sigma-factor-WhiG	gnl\|CDD\|235770	PRK06288, PRK06288, RNA polymerase sigma factor WhiG; Reviewed.	1.34169e-161
NZ_CP006723.1\|WP_000137385.1\|1763858_1764122_+\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	3.39933e-22
NZ_CP006723.1\|WP_000938821.1\|1757660_1759886_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	2.6787e-79
NZ_CP006723.1\|WP_000077420.1\|1776124_1776406_+\|DUF370-domain-containing-protein	gnl\|CDD\|179823	PRK04323, PRK04323, hypothetical protein; Provisional.	3.36055e-36
NZ_CP006723.1\|WP_045191947.1\|1762204_1763026_+\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|274610	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.	1.67173e-15
NZ_CP006723.1\|WP_000922655.1\|1763106_1763862_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	4.98579e-106
NZ_CP006723.1\|WP_080010664.1\|1776402_1776984_+\|guanylate-kinase	gnl\|CDD\|173199	PRK14737, gmk, guanylate kinase; Provisional.	3.18662e-107
NZ_CP006723.1\|WP_000393529.1\|1769023_1770304_+\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|183703	PRK12724, PRK12724, flagellar biosynthesis regulator FlhF; Provisional.	0
NZ_CP006723.1\|WP_000167663.1\|1754394_1755180_+\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	1.13871e-96
NZ_CP006723.1\|WP_000503776.1\|1761143_1762208_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|236154	PRK08119, PRK08119, flagellar motor switch protein; Validated.	3.87444e-67
NZ_CP006723.1\|WP_001162081.1\|1755186_1756383_+\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	1.83257e-25
NZ_CP006723.1\|WP_000057944.1\|1760249_1760576_+\|DUF971-domain-containing-protein	gnl\|CDD\|377616	pfam06155, DUF971, Protein of unknown function (DUF971). This family consists of several short bacterial proteins and one sequence from Oryza sativa. The function of this family is unknown.	1.67852e-27
NZ_CP006723.1\|WP_000455610.1\|1764128_1764908_+\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|376520	pfam01311, Bac_export_1, Bacterial export proteins, family 1. This family includes the following members; FliR, MopE, SsaT, YopT, Hrp, HrcT and SpaR All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.	2.34318e-47

>NZ_CP006723.1|WP_000455610.1|1764128_1764908_+|flagellar-biosynthetic-protein-FliR
MEYFINHFQVFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVIAGFLPPVPGDMGSYGLVVIAEALIGILLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYKAMEDAVGAMFFVAFRLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMGAAFDLSFDKVNLMLQEWPK
>NZ_CP006723.1|WP_000137385.1|1763858_1764122_+|flagellar-biosynthesis-protein-FliQ
MTELDVMTLIRDSLYITLKISSPILFTALVVGLIVGILQTTTSIQEPTIAFVPKLLAIFIVIVIFSSWMIQTMTDYTRNLFLMIEKF
>NZ_CP006723.1|WP_000922655.1|1763106_1763862_+|flagellar-type-III-secretion-system-pore-protein-FliP
MLLAGLSLGSTFFTLEAQSAGTRIPIPNLNINVNEAKSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLPPNQVMMGLALFMTFFIMAPTLNTVNEKALGPYLEGKIDTNAFFEKGMIPIREFMMRQIGTSGAKDVALFLKIGKVEKVESFDDVPSYVLIPAFMLSEIKKAFWIGIVIFIPFIVIDLVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSYK
>NZ_CP006723.1|WP_045191947.1|1762204_1763026_+|flagellar-biosynthetic-protein-FliO
MRFLKTSQSNGKKTISVLSLLIIFNFTVISLSAQSERELMDEALKKELGDFSQKKNQETNSGGKKADGSTTNSSTEIKSAQNGTSQSNSSEIQQESNPVEERYRPKDEGPGIAGTLLRVVFILGLLCAALYYILKYVSKNREGKLPVRGEMSVLSSLIIGPNKQLQIVEVSDRLLVLGVADNGINLITEISDPEVKHRILQKKETFQPPEDGFLVTVLEQIKDLNSRISGNTKGPPDSGGGAAREEKRKQARKKLEELKEKTSSLEGGLFDLR
>NZ_CP006723.1|WP_000503776.1|1761143_1762208_+|flagellar-motor-switch-protein-FliN
MGEGSLSQEEIDALLAGASDSFDPATVAPAATQKEVPGMSPVDRDILSDLLASCFQVAGNTLGAVLSRSSAFLNPNVETKTRKDIESELKSGSFLLYSTLSGSVNGRVVLAMSAENAVKISNSMMGGFDSGELDEAQMQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETLIRVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSAGGDMSGMGMGGMGGMGMAPGSMSVKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRIKPEGK
>NZ_CP006723.1|WP_000057944.1|1760249_1760576_+|DUF971-domain-containing-protein
MAQLSLKATTPDQIDFDENHLKITWKDGVISIFDLLDLRKRCPCVVCKGGHGGKIGTTTGAIQSIRLYSVNKVGRYAINLIWSDNHQTGIYSYDSLRMFADGLGGELS
>NZ_CP006723.1|WP_000938821.1|1757660_1759886_+|phosphatidylserine-decarboxylase
MLQFHFFQFLDWDLLKFFFYFLSFIGVFLTIRLRFPQLRFLFLAIKIFSGNMDYKGSRGRLVHSQAFFSGTASSLLPGAVIGSALALMIGGPGVLFWIWISSFFIMPLRFVSSTLAIRFRTKTDSGRYLSGPMYFIESALKARWLAVGFAAVGLLTVLVMGGVVPMLYVTHIANRVFEINGMTVPFLLSVILVFIVLGGVRRVGKVSAYLAPIGILLFFLSYFFLFKGSLMNFKDFIWLSFKEAFQPGAAITGGGFALARVYSMASGIFFVSTETGIGKSAGLSGVVRTDYPAKQGLVSMLATFFEGFIISTLVVYALSSYGAFKMEEQLVFLNALFQGNTNPINAAFFVSFLLFGVVSITGWFYTGEQKALYVFGEKFANFFRMLFLFTILAVAYLYVKNGEQILFEAFGLGYSLSIITAVPVLISLVLLEKIARTELKRFLTESGARYEVLKDFYLLILSVVPKNLLSRLFGLLASSRLPRFILIPILKAFARAYKINVDEAELEIQEYNSLNEFFTRALKAEARIIDSADDEMVSPVDAKITGYGDINQRIIIQAKGVDYNLKELLGGSKYLEDFTNGKYITFYLSPQDYHRIHSPAYGKILGYYYEPGKLFPVNELAVFGIRGLFPKNERLITYLQTEYGKVAVIKVGASNVGRIRVTYDNKIVTNTLIRTARTVEYKEVSIMIGKGAELGRFEMGSTVILLMEKDTFQFNSLTVNEKITYGTTIGKFKKKKCKLPK
>NZ_CP006723.1|WP_001202903.1|1756731_1757598_-|hypothetical-protein
MRATSKIFGILLSVLFFLFCPYSILKAQSSKIKTHSVKPALEIPNPEEENWELGLRAGIGYKGEDRLNSFLRGFTNTYDPGVASKTELDPPKQTTQVELFIRKRIASESQIGFIGGYREWQKFGLKQFSSEPFYTDLKFKISNPYALLMYWHEWNYKRWIFQGGLGAGMSQVYWDSEGYATSGKETFRQEGSLSGTGIEFRLEGAVSRRITESASIQLGIAFSWINIPSLSGTFNGESASFYLRENGSITPLTESDNQTSMLVTNQFSRKLEFQVLTTTLFFGIAQKF
>NZ_CP006723.1|WP_001162081.1|1755186_1756383_+|sterol-desaturase-family-protein
MQGSVLDLAVPFFLILIGFEVLYSKIVGKKVYRWNDTVADLSTGILFSLTGVCVTIFSLWIYEKFRIFCSLQTLFGVPEIPLGIPIWPDPVGWHFDFKSLVGWIFVFLAVDFVYYWFHRATHEINFLWACHVTHHSSEEFNLSVALRQSSFQRIFEYMFNLSIAFCGVPWQAFLLAHGILKIYQFWVHTRLVGRLGFLEEILITPSHHRVHHGRDPKYIDKNHGGILVFWDRIFGSFAREEEEPIYGLTKPVTTFDPVYTNVHVYEEIFSLVQKTNNWKEKILLFLKPPGWRPESLGSSVYAEEVDRNRYIKYDPIVSKQRMVLGFLEFLVLTVFSLLLLKYFKSGIFELWKIFPVIVFFFYGFRLTGFVLDGYTIGKARIILFLLVGMILYWILFFV
>NZ_CP006723.1|WP_000167663.1|1754394_1755180_+|SDR-family-oxidoreductase
MTKTAIITGGTVGIGYELSKLIAADGYDLILVARNEKTLKKVKKEIESSNKVKVDILSLDLADPKSPKKIFDFAKKTKAVVEVLVNNAGFGTNGKFDRMDLKEELQMVQVNVASLVELTHLFLQGMVERKNGKILNVASIAGFQPGPNMANYYATKAYVLSFSEAVYEDVKKDGVTVTALCPGPTKTEFFERAEITKSKLLDNPMAPIMEAKEVAEIGYDALKKGKSVVIAGALNKILAQSVRITPRFVTRKITKFFNQNG
>NZ_CP006723.1|WP_000412863.1|1766853_1768971_+|flagellar-biosynthesis-protein-FlhA
MEKKWWNQSDVILGIGAVAVVAMLVIPLPGFILDILIIVSLAIGLLVLLTSLSVNEPADFSIFPSLLLITTLYRLALNVSTTRQILSKGPAMNSHVIDAFGSFIIGSESGLSKYVVGFIIFIILVLVQILVITKGATRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIEAEVDFYGSMDGASKFVQGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGDGLVSQIPALLTTVATGIIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFAAFIPGLPFIPLVLLSAGIAYLGYSLEQTVKEQLESIEKKEKESGQDRKPKDFYEELRTDPIEIEVGYHLIPLVDVSQGGALLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGTEVGASTVKPDKLMALNTSPGSAESIAGEDFLEPSFGQRAKWISAEDKSDAEAKGYTVVDASTVVVTHLKELLATHASTLLGREEVKKLLDHYKTSYPTLIGELDADKPGNLGIIQQVLQNLLREGLGIRNLVPILESIANNLSKYQNPYILTELVRQSISRTVVRDYLSMDGKLRVITLESRILDRLNKSITQDRIENRDVLSLAPDFYRRLIDSVAELYRNFRTEGKFPIFVVNREVRLPFSYMLAKEFPPRNFGVLAYEEIHSSVDSVIEAELKLPQAQTAGISEET
>NZ_CP006723.1|WP_000393529.1|1769023_1770304_+|flagellar-biosynthesis-protein-FlhF
MEFAKIRGKSYQDCLMEMKMKYGSEATVISQTVVTEGGVMGTGLLAKKMIEIQIGIPEKQASREKIERKLQDLKDLLKQKSYASPERKKTLQTLKPLSKTLEEKEIAVEEEIEEITTEPDRVGLSFEKELLDKNSFLRRETSTVRKDSPLIRLGEKLVREGMSQSYVEEIISKVEERLSPLDQGRNHAVLERTIEILKERVSVDSDLFQGTGKNQRKVIFFVGPTGSGKTTSVAKLAAKYFLHRGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMNSLLSCFGEKDSVENLLVLSSTSSYHHTSTVLKAYESLNYRRILLTKLDEADFLGGFLELADTYSKSFTYYSVGQEVPFDILSAEKNLMAECVVTPEKIAELRGEVFTVAGD
>NZ_CP006723.1|WP_000371638.1|1770331_1771246_+|MinD/ParA-family-protein
MDQAAHLRKLTEGNTSLKVLSSRKPTTKIVAIASGKGGVGKSTISVNLAISMARAGQKVLVFDGDLGLANVNVILGIIPKYNLYHVVKGHKSLKDIVIQTPEGVDIIAGASGYSQLANLNDTQRNSLIKGFSELDNYDIMIIDTGAGISSNVIGLTLPADDVIVITTPEPTAITDSYGLIKAIVSQSRDKNLKMVVNRVRSAIEGKKVADRVIDISGQFLEVKVENLGFIFQDEEVEKSIREQKPYIINSPKSKAAACLNRITYSLLNQDIEPLEDSGIGGFFKKFFNFMDVRDKEFDKNDEEE
>NZ_CP006723.1|WP_001053201.1|1771249_1771726_+|hypothetical-protein
MNLQILFIGVFVIVAFVISALCGFLIGNSFGHILLVTFLSMIAFAVLGFGIHAVLETKVPEFLDFLSNIGGEYIPPTQATDSENVVRGRDYTSNASDTDLAEGSSSNSEVFASSAPKRQKDGNFGDHIMVENIAIKNEPKLMAEAIRTMLARDDMGEK
>NZ_CP006723.1|WP_000039671.1|1771853_1772654_+|RNA-polymerase-sigma-factor-WhiG
MSKKYEKYNQQDETELWKSYRETKDQDIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFDDLVSYGVFGLLDAIEKFDPERLIKFKTYAMTRIRGSIFDELRSIDWIPRSIRQKAKQLEQIIGMLENKEGQQVDDDAIAKELGISMEEYNSLLTKISGTSLVSLNDIWFLGDENDEVSFMETLESPMNMNPDTIIEKEEIKNVIVEAIKTLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESRISQLHTRAVSRLRSKLGKVKSVISRK
>NZ_CP006723.1|WP_000535110.1|1772679_1774665_+|FapA-family-protein
MGSLIPFLQDQSKELDRIQNEQVEVYGDTLENSLRLAAKHLKKQVHELDYVVLKRGKKKLFGHEPWHIRVSILPEDNFLDELTELDQKLTGGSGKLVSKDLKDLIQPKDKNGKALVQILRNGVYLTTFAPLGDGHPVDLDEVFKKLSLKGVSGEDGKLVRKIVKEAKGEPILISQQKPRPGMEAKLILDISPDKMKAKVTILPPRPGGRDFEVRDVVNHLKNAGVKYGFKEEEIQRKLEEEFYNQPFIGAEGDYPINGKNAQIIYHVRTSKNISFREDESGRVDFKDLDLIENVVVGQLLAEKIPAEKGKYGRTLFNELLPAKDGADTDLKQGKGTILSEDRSKLTAEVNGQVVYATGRLSVETVYRVNGDVGIKTGNVTFLGSIVITGNVEDNYSVKAAGNIEIYGTVQKARVEADGDIIIRQGISGREEAHVESTGGNVIAKFIQSATVITEKDVMVQEGVLHSFVSAGGKILCNGKRGQIVGGTVRASELIAARSIGSSANPATELVVGIDPKVLKQIADYEAKMHESQAKHEQVFKSLKTLQARKESDPASFTEEHENQLSKMQKAVDKLDSRIKEFETEINNLKNYMEEKSSHGKISIEKVLYGGVTMRIRNSDFKTRNEIKNKTFVEENGMIRQVPYEDPEPDKKDWRKKRNRGN
>NZ_CP006723.1|WP_001239630.1|1774673_1775027_+|hypothetical-protein
MRLSDTFLGYGQAPDMIRKQQVENPFTMPHMISETSRVVKEYNDTRKYAVELYTDVFSLSPESRERMALARNQKIDQIKDRLKTYKSASDDKSYTYSSNGQKTSNVPSNRGKIEFFA
>NZ_CP006723.1|WP_000418455.1|1775072_1776125_+|hypothetical-protein
MELFAVFAINAVVSVVLYYTITSKVTERIRTHMLGKINEEIRDFIDELETESLRQVDLMGARILTFKEITSKAEELVKRIEQSTSPDILEKIQIVDKDSVINNENKRSENLYPLKNGNHTGVSDSVQQGVGHIYKENLDLTREDAENFSNLQKVSNSKIHTSYIQKLETTSKVVKKEVVSQNKPEILPQGSTSNLVLETIGKGIRKFFGIQEIKTIRSENETSGNDFFPGTRNSTLDISLDENPFAPISESKLNETSSLVFKDNLKPKEADFGRILQENIVGYQPIKPDSTKISAEAALLEIGDDSTKIEKVVFLLKRKYTHEEISEVLDLALGEVDIIERFRLDRNRRF
>NZ_CP006723.1|WP_000077420.1|1776124_1776406_+|DUF370-domain-containing-protein
MSQFSVLNVGFGNIVLVSKIVSIIHSDSASAKRIRNEAKSNNSLIDATQGKKTRSIIVTDSNHLILSNLRVESLTKRIESRDNSIASEEEDLD
>NZ_CP006723.1|WP_080010664.1|1776402_1776984_+|guanylate-kinase
MNSPKLFVLSSVAGGGKSTLIQKIREKHPEILFSVSCTTRAPRPGDKEGITYFFLTKEEFEKGISESAFLEWALVHDQYYGTPLKFIEGAFQKGSSVIMDIDVQGAKIIKEKLPDKIVTIFILPPNEKEWEKRLRGRGTDSEENILKRIQNGKLELERQNEFDYKIVNDNLDRALAELENIILKSESKSTTEK

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP006723_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_4

1939284-1939383

Orphan

Consensus_repeat	Method
CTAAAATGTGGGAACTACCACTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006723_4

>merge|NZ_CP006723|4|1939284-1939383|CRISPRCasFinder
CTAAAATGTGGGAACTACCACTAAGTCAAAGATTTACACTAAAATGTGGGAACTACCACTAAGTCAAAGATTTACACTAAAATGTGAGAACTACCACTAA

>NZ_CP006723|4|4|1939284-1939383|CRISPRCasFinder
CTAAAATGTGGGAACTACCACTAA	GTCAAAGATTTACACTAAAATGTGGGAACTACCACTAAGTCAAAGATTTACA
CTAAAATGTGAGAACTACCACTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000572973.1\|1928325_1929264_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP006723.1\|WP_002077265.1\|1925178_1925937_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP006723.1\|WP_000612757.1\|1944487_1947304_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP006723.1\|WP_000907541.1\|1924977_1925172_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_082271356.1\|1932034_1934320_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215061
NZ_CP006723.1\|WP_045192039.1\|1947708_1949361_+\|acetyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|227136
NZ_CP006723.1\|WP_000672089.1\|1929665_1930463_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP006723.1\|WP_002129407.1\|1949367_1952112_+\|biotin-requiring-enzyme	unknown	unknown	gnl\|CDD\|236307
NZ_CP006723.1\|WP_002120973.1\|1939393_1942636_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP006723.1\|WP_000116243.1\|1942655_1943192_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|237227
NZ_CP006723.1\|WP_000425211.1\|1925947_1926865_+\|DUF350-domain-containing-protein	unknown	unknown	gnl\|CDD\|226289
NZ_CP006723.1\|WP_001281426.1\|1943194_1943875_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_045192032.1\|1930677_1931964_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP006723.1\|WP_001080347.1\|1938195_1939278_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377164
NZ_CP006723.1\|WP_000004280.1\|1944164_1944473_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000406879.1\|1947287_1947617_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP006723.1\|WP_001220672.1\|1952185_1952524_-\|YceK/YidQ-family-lipoprotein	unknown	unknown	gnl\|CDD\|227932
NZ_CP006723.1\|WP_002079097.1\|1952792_1952927_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000510661.1\|1921276_1924690_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_CP006723.1\|WP_001168402.1\|1927870_1928305_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000572973.1\|1928325_1929264_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	1.28562e-79
NZ_CP006723.1\|WP_002077265.1\|1925178_1925937_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.34861e-143
NZ_CP006723.1\|WP_000612757.1\|1944487_1947304_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	7.32649e-56
NZ_CP006723.1\|WP_000425211.1\|1925947_1926865_+\|DUF350-domain-containing-protein	gnl\|CDD\|226289	COG3766, COG3766, Predicted membrane protein [Function unknown].	1.84718e-05
NZ_CP006723.1\|WP_082271356.1\|1932034_1934320_+\|hypothetical-protein	gnl\|CDD\|215061	PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional.	5.82701e-42
NZ_CP006723.1\|WP_045192039.1\|1947708_1949361_+\|acetyl-CoA-carboxylase	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	4.36964e-128
NZ_CP006723.1\|WP_000672089.1\|1929665_1930463_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	7.51206e-39
NZ_CP006723.1\|WP_002129407.1\|1949367_1952112_+\|biotin-requiring-enzyme	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	9.66673e-45
NZ_CP006723.1\|WP_002120973.1\|1939393_1942636_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP006723.1\|WP_045192032.1\|1930677_1931964_+\|hypothetical-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	6.64668e-46
NZ_CP006723.1\|WP_001080347.1\|1938195_1939278_+\|PepSY-domain-containing-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	1.95887e-51
NZ_CP006723.1\|WP_000406879.1\|1947287_1947617_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	4.89607e-25
NZ_CP006723.1\|WP_001220672.1\|1952185_1952524_-\|YceK/YidQ-family-lipoprotein	gnl\|CDD\|227932	COG5645, COG5645, Predicted periplasmic lipoprotein [General function prediction only].	0.00188347
NZ_CP006723.1\|WP_000510661.1\|1921276_1924690_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	5.48168e-07
NZ_CP006723.1\|WP_000116243.1\|1942655_1943192_-\|peptide-deformylase	gnl\|CDD\|237227	PRK12846, PRK12846, peptide deformylase; Reviewed.	6.93109e-80

>NZ_CP006723.1|WP_001080347.1|1938195_1939278_+|PepSY-domain-containing-protein
MNRKKLYKLHSILGISTGVFLVIVGLSGSLLVFGKEIDQLLNPNLWYISASKERLSIDVLRAKLKQELPSHALAGWLLSEKQNQPDQVWLHFLDSKDRKESIILLNPYTGKILGILSENRSDSFYSWMLKLHYSLLMGSFGYFLTTLFGVIFIFQGFSGMILYRRIWQNLFRLRTRQSLRTFFSDLHKLVGVFSLVFNISLGFTGAWWNVQAIVGLLSAQEERKVEKFFKESISVDSLLKEIKMQLPEFQTGFVSFPHHHEKDPIQFYGTERLTNPFRSRFGSYFRFDSESGKLLEIFNLSNENLFYTIIDSFRPIHYGTFGGIITKILWVILGLSPGILYISGIGILISKRNLQEKRKN
>NZ_CP006723.1|WP_082271356.1|1932034_1934320_+|hypothetical-protein
MNFRITLIYLQKITIGLLFLITLSCEIQADEVEAGTYRDLTKALQNPLNVRVLNLSGEKLTALPKEIGQLKNLQELNLKWNLLTVLPKEIGQLENLQELDLRDNQLATFPAVIVELQKLESLDLSENRLIILPNEIGRLQNLQDLGLYKNKLTTFPKEIGQLQNLQTLNLQDNQFATLPVEIGQLQNLEKLNLRKNRLTVLPKEIGQLQNLQTLNLQDNQLATLPVEIGQLQNLQTLGLSENQLTTFPKEIGQLENLQELDLNGNQLKTLPKEIGQLQKLEKLNLDGNQITTLPKGNQLTTLPAEIGQLKNLQILSLSYNRLATLPREIGQLQNLKSLDLGGNQLTTLPREINKLKNLKELYLNGNKLTIVPKEIWELENLTILRLKNNRISTLPKEIEKSKNLQELNLRGNRLVTLPGEIGELKLLEELNLENNRIKILPNEIGALENLWIFNLSGNKLASIPKEIGNLQNLRMLYLENNQLKTLPRQMEKLQDLEVLNLLINPLLSEERKKIQALLPNCNIDLRDVEEGRTYRNLNLALEQPLKILSLSLEYQQFSLFPKEILKLKNLRSLSLYDTSLVALPKEIVRLKHLERLSLGLNQLKSLPKEIGLLRNLRSLDIGANNEFEVLPKEIARLQNLRSLLLNQNRFKIFPKEIWELKKLVILNVNTNQLDALPEKIGRLKGLQMLDLSHNRLTTLPSEIGQLHNLTELYLQYNRIKTLPEEIARLQNLRKLTLYENPIPPQELDKIRKLLPNCEIRF
>NZ_CP006723.1|WP_045192032.1|1930677_1931964_+|hypothetical-protein
MNFRITLIYLQKITIGLLFLITLSCEIQADEVKPGTYMDLTKALQNPLNVRVLDLSGQNFTTLPKEIEQLKNLQKLYLFDNRLKTLPKEIGQLKNLQELNLSSNQLTILPKEIGKLENLQRLDLYDNRLTILPIEIGKLQNLQTLYLSSNQLTTLPRESGKLENLQELNLSDNQLTTLPQEIGQLQNLQTLNLKSNQLTTLFKEIEQLKNLQTLNLSDNQLTTLPIEIGKLQNLHTLNLSDNQLATLPIEIGKLQNLHTLNLSDNQLTTLPIEIGKLQNLHTLNLSGNQLTTLPIEIGKLQNLQDLNLHSNQLTTLSKEIEQLKNLQTLSLSYNRLVILPKEIGQLQNLQELNLWNNQLTALPIEIGQLQNLQTLSLYKNRLMTFPKEIGQLKNLQTLYLGGHNQFSSEEKERIRKLLPNCKIYFGDN
>NZ_CP006723.1|WP_000672089.1|1929665_1930463_+|leucine-rich-repeat-domain-containing-protein
MKFRITLIYLQKITIFLLFLIYLSCEIQAEAPEDEPGTYRDLTEALQNSLDVRILILSEQKLTTLPKKIEQLKNLQMLDLCYNQFKTVPKEIEQLKNLQMLDLCYNQFKTVPKKIGQLKNLQVLNLSSNQLTTLPKEIGKLENLQVLNLSSNQLITLPKEIGKPENLQVLNLGSNRLKTLPKGIEQLKNLQTLYLNYNQLTTLPREIGRLQSLTELHLQHNQIATLPDEIIQLQNLRKLTLYENPIPPQELDKIRKLLPNCEIRF
>NZ_CP006723.1|WP_000572973.1|1928325_1929264_+|tRNA-epoxyqueuosine(34)-reductase-QueG
MIESKEIISEFKTLIEGSGFDLYGICEANIPEEDRENILLWVKEHKHGNMEWYPKNMDLRLDFKNLGFDPQSVIVLGAIYNDPEYEKIRSGMTFQFSKYAVGEDYHRVLRKHAKPLIKALQKKYPNHHFRQGVDSLPVPEKVLARLAGLGWKGKNTNLIHPEIGSFFFITVILTDLPIYTTQVQIKDRCGTCTACIDACPTGALKPYQIDAGKCISHHTLEDGSEEIPDTYGWLVGCDICQDVCPWNRVKAFKKGIRTGLEEFKVRSYLKENPESILTLNEQEFEKKFSDSAISRMNFKMYQRNVNKIKKKI
>NZ_CP006723.1|WP_001168402.1|1927870_1928305_-|hypothetical-protein
MQKELSENSNFTRKDLTIFAKPPISISRSDFITATRLTLSSTNINFATSNPSEQRTLKNNRKFSKQIIFASVLGALKGFEERDLKPFHVNHKPIFTEIGSEILNTEFNPILNEDKIQILKNAFDYGIRKVYHLEWKLYTSKELY
>NZ_CP006723.1|WP_000425211.1|1925947_1926865_+|DUF350-domain-containing-protein
MEMILGYLSVLGRDAVFFLISFILFYIGKKIKDWIEPGDLDQEIVVKNNTAVSTGLSGYYLGLTLILLVILSSPGTDFISDCFQVLYYGILGILLLNLSYFINDKLIFRSLDFNELVYSGRNVAVGAVVFGSSLASSIIIAASLSGENAGLAFSIWKNSGLLEPVQKLLDGTLLGIVFFIVGQIALILFTIAYRKIVPYSLDVELKEKENLASGISYSGALVALGIIIARALHKDPVSMEHTLFQIFLDFILGLLVIPAVRLLTDAVILPGSTLKEEISRDQNVGVGILEAVVLVSFAGILFYAV
>NZ_CP006723.1|WP_002077265.1|1925178_1925937_+|type-I-methionyl-aminopeptidase
MIFIKNKSEIEKMRAAGKLAARLLDYISSYVQPGVSTLQLNDLCEEFTKKHGARSAPLGYKGFPKSICTSVNQVVCHGIPKANEVLKEGDIINIDVTPILDGYHGDSSRTFIVGGNTSSEVKTLVQDTEKAMFIGIEQVRPGNRVHDIANAIDDFLTPKGYGIVRDLMGHGIGRGFHEDPQIPHFRQNRKLAKLEPGMVFTVEPMVNLGTWQVNFSKEDHWTVTTRDGKWSAQFEHTVLVTEKGYEILTVSD
>NZ_CP006723.1|WP_000907541.1|1924977_1925172_+|hypothetical-protein
MAGKNVERETLIVTSKVKAYIKSKGFMTSGDAIDGLNEKIHQLIDDAVKRTESNKRSTVRPTDF
>NZ_CP006723.1|WP_000510661.1|1921276_1924690_+|chromosome-segregation-protein-SMC
MGIELLLPFIASVGITILLRRLDKSNYKLSQIKRFTGKVQEELNGIALEKIGSVKDAGIDLEISLKQTRKLANEVHSLNEESRQLLESIKTNRDFLDSVARDLKEVVQLSSEIREESNAIQQGLLRMESGKKEIQLLDQKILDLRSEAEAILEVFSDKVNLRSDELLQSLASKIVELEELLEIKNDKIDQGLNSIAVNYKEGLEAHSNSLMRESVGRVEQLRSEITSLFETIRNKEEDWDLRSEKLQTIFLTVSDKLERLDLRIEEKTEAADHKLEEMAKLAEKSSQEKLDRILEQVTHSKEAFINGVKLEVDSIRREIEGMSLETMTRRDEILNETRRQAESINESIQFFQEKYLEAENKLLRQADARKSELLRQIDTFEEEFNRISSNLRNDSDVLKKEILLGFKEFHSTLEVAKEDAKEKTIQGIVSLKEEFDLELSKLHSERSALIRQDLEVVRQSIETLDKQISTRIKDVDSYLGDLQAALESSAGDLVAQVEEKIDLLSGTVDEEVRKIDQRFENLSRYWEEELGNIRLNAQDQMGRLQEKLGDVHIEGKGLLEEFKNEYSIQKDKIEEFVSRYKSNFQKEGDLVSDRLGESLRHIKEEGNEILQTLRVEFSGTIDKMEQIVKKNEKVLEIHAEKIKNNVESSLENSSRDAERVLDRLRDSAEVFFEKQEEKISRLNETIDSKISKQLTSLMDKGQLQLGQLEDRISKYILDVKKNLEESLKNSRKDNDDQMKGFQQQLQNQLYEMETAAQEILRSGKEEFDGSMMEYKELQMNLKRDLEEIRNSKQNLISEIQEESENLRSSVEEITDKMDEFGEKMELFQKASEIVDRTDSYIQTMEELLSKADEQTPLLNELGQKLNELQNLKYSLVHETEDLKLKLDSFHSIKESSDLLRSDFEELQRRSSEWQDTFTKLLEAGEKALEMEETFGDLSSRLETLESVREEVKILFEETETHKESAKGIANKLYSLQNDVEILEAREKEIAETVRKTDDRIESLFRKKEEIRSVEAKFEKIEDLMVDLSERHKQISTLQHRMEDLKNGAMVVKDDLEGLLGEADDKFEKLSGFLDAVDNVTSGKSKDSSKDHLIQRKKATVLNLYHNFQWPAETIAEKLNLETGLVNTILQSESIKKK
>NZ_CP006723.1|WP_002120973.1|1939393_1942636_-|efflux-RND-transporter-permease-subunit
MKSLVEFFLSKSIFVNLLTFLVILIGGFTAVKMNREAFPNINFDIVSVVTVFPGASPSEMEKLVTKPLEEAIQEVDGIKEFRSASIENRSGIVITLDPDSKNTQKVVDDIKSAIDRVEDLPEEAEDPIVTEITTSRQPVIEINISLKSNDSSIEAEKHLKAQAKIVEQALEDIPGVARISKRGWRDTEMQVDIDPVAMFSKYLTSQDIIFALKNRNINFPGGNIAGNQKEVILRTIGEFNSPKEIETVHVRSNEVGNSIRIDNVARVTEGLKEAEYLDKVNGKKTIALTVIKREKADAILVVDEAKKIIEEFKKNSKNEFEYAFVNDLSKYIRRRLGVLLSNAIGGLILVTASLFLFLGWRVALMTALGIPVSFGATFVIMDYLGLTLNLISMFGLIIVVGILVDDAIIICENVYRYMEEGMPAYEAALKGTSEVIDPVTATVTTTVAAFAPMLFMTGIFGKFIYSIPLVVIIALLASLSEAFFILPSHLYDINKHKFHSGEIKEESGWFYKLKVNYYLPLLKFALKHRLQIFIYLFAMLVGSFALFAVFGRFKLFPGSVDVFQIKLTGQTGISLQEMEKFTHALETELAKISKEEIENYVTRVGIIQKDPNDPFTKRGKHYAQVLVYMTPEENRKRGTDTIISEIREKTIWLLNEKSVKTLEETRKKEAEKKKEEYKPFNLNEYPAEFSRFKGQLLALDFEKLAGGPPVGKPVAIEIRGDDYDTLIRIGEEYKSVMAKVPGVTDIGDDFNEGKDEIRIKVNESLASTAGVSVFKVAQAINTAFQGTVATKIKRADEEVEVKVRFPEEVRKSIGSLNNIFVSNQLGKLIPVSRLINYVREPGFANINHLDGKRLLTVTANLDEIKTDTRRANAEIAKLSKGIIDKYPGYRMRFGGENKDTEESLASLGRAFLVAFIIIFMILASLFRSLIQPVIVVSSIPFSLIGVILAFVLHGEYFGFLAFLGIVGLAGVVVNDSIVLVDFANQLKLEKPGEDIDTILVETGLLRLRPVVLTTVTTVLGLLPTAYGIGGKDPFLVPMALAFGWGLAFSSFLTLVAVPVLYKTVHNVQLKINRVFLKSKR
>NZ_CP006723.1|WP_000116243.1|1942655_1943192_-|peptide-deformylase
MSVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSSHNVLD
>NZ_CP006723.1|WP_001281426.1|1943194_1943875_-|hypothetical-protein
MSDLIQIRRWNIDNKNVLILIPDLESKERQLYAKNFYSHFSIREVELSTKLVRFDFPKTEEWIDRLSREILDSKRKVKLIGEGLWSGIVFELLKKYPQMIEAACILNPPLNRKEENWFPKNVEWILERFPWNLFSEGIYTFYQTLETKLQFGLTNSKLLPTIVFTKTPEKITKQIQTLQKFPVFRIESSNLKSIHELLENLILKILTEVAISSVQKKSKFKIDPGF
>NZ_CP006723.1|WP_000004280.1|1944164_1944473_+|hypothetical-protein
MSESIEDLQKKLKIQNDIIKGYEKVLRLNEQELENADEIIRMYEGIIQYSGKELKDVKEAFDATNVVTNLSREELMSALSRIKELENVNKKLREEALKFQTG
>NZ_CP006723.1|WP_000612757.1|1944487_1947304_+|SpoIIE-family-protein-phosphatase
MIPNKKQDSLLRQGSDGSLYLEDNPGLTVVFESLLTEIIHITSAKFGIFSFRLEDGTLKSIYGNHPSNKIEEAKLVSEFCFKTGQDLNLKKGESPNKLIPQLEQNSVCCVLHVGELGDSSLEDQKKIFGTILLGRSDQEGGEFRESDFIHLKATVRIISDLLEKSFISGESSLVVLSLMTISRVALESVQIRKQTDRFDFLLTEIIRVSGLINKSLDLSQLLEAIMLSSKSVFRTEACSVLLLDDTKEYLYFHTVLGEKRDEVTKVKVPVGKGIAGMVVQDKKPMIINDAMNDPRVYREVDKASHFVTRNIMAAPLLVEGQVIGVIETINTIDRNSFTEEDLELFLSFSGTSALAIQKTGLLQNLEDANKDLRKKVSELESLFELSQVVSSAKSQADLMKHSIPVIHNEMDAGRTGIFLINRRMGLLTCISYTSEKIVEIFRTKDYQGSFIYRSVEEEKTTIKEDIQNFEFNHELDLEFLKGSYIVLPLTNPERNAFGVITVSDRVDKLSYNYSHLRLLQTFASLIARGHETLKLQNEMISRKAMQRSLEREIEITREIQKNILPESKVFHSNFDLGVKSVPAKEVSGDFYDYYQYQDGQYSFLISDVSGKSLPAAIFMAMSSSIIRTLARDHDLDPEEILKQGNALIYEDSHNGMFVTTFFIHYNPAIFTLDYASAGHNDQVLIRKDDSWEIIKGSGPPLGVLPSASYKGGSLTVEPGDMLILYTDGAIEEKNSKDEEFGLERMIREVIARKHLTSQEIVEELFGLVRKFSGAPELFDDFTVMILKFNDNYQFSRIFEAKTSEIPLFREFVYQTIKVRNLEDSQRDDILLACDEAGTNIVMHGYENTDLKNPKFECKIRFTGDWITIVLIDSGKVFHREEVQDPSIEDNLSGKRKGGFGVYLIEKLMDSVDYSSEGGKNFLVLKKNFRNKASNGNNV
>NZ_CP006723.1|WP_000406879.1|1947287_1947617_+|STAS-domain-containing-protein
MEITSEIKNHSKIIHLIGNLDVHNTHKIESAFMEQIKTGNSRVIVLDLSSVEFISSAGLRIIVAALRICREKDVEFRLAGIKPAVKKVFEIIDMNSMFSIFETLESAIK
>NZ_CP006723.1|WP_045192039.1|1947708_1949361_+|acetyl-CoA-carboxylase
MSEAKYSLENPFQSTSEPEVLKPRGLYEEANELGKELLNKPLLGGGVDRILVQHSKDRMTVWERVKVLTDQEPNILYQNWGKSLDGASLVTGILNINGRDVAVYGHDFTLRAGSMDATNGSKLARLIYMAGEHGIPLIGMNDSAGAYVPAGVGGLDGYSEAFTALRKISGVVPSLMLMFGFNAGGGAYLPRQGSFMIQCDSTFFGLTGPGVVKSVLGEDISADDLGGPKVHGQSGVVDIVTGDELGSLRTALRLLSYLPDNNHSFAPFHATSDPTNRFIYEEEILFKKTFNSPTGMNTPFDITLYLQNICDHGQYFEIQGQRSRNLVTAFGRIGGHVVAFVANNSAVASGQIDIGAARKGTRFIRFCNLYNIPIVFLEDTTGFLPGKEQEQNGIVLEGRKLLDSIIDIRTPRLTLIIRNAFGGAYACFNSYHTGADMVFALPTARIAVMGPAGKDYVYKDEVSSIQKEYQENVKKGMSEKEAIVIRDKKLQTLSTQYEKELMNPKEALSLGSVSRIVLPGTTRNILFQNLDYLIRHYKPAPLSGPQREFE
>NZ_CP006723.1|WP_002129407.1|1949367_1952112_+|biotin-requiring-enzyme
MIDFQNNRIQFHQSSSPWIRSFSLESIKCLIVCRGPVRKEAMEIFDSIGIREYGILLSEKDSVVYPMALAPELRGFRFPNNIHRVPDYMGAGKEEKMERIEQIISIAKDNKYTHIFAGYGFMAEDSEFISAIEKSGVVFMGPASYVADQAGSKDAAKKIARKLEVSVTPGVDNISSLALLAKAPDAKSLEKIAKEKGIDFAFDPSLSLEVNAENLLELGYSKIIEFVSIADLQVEAEKECKKIWEKYSKNRIRFKYIGGGGGKGQRVVSKPEEVKGAVQEILSESKVTAPGTNKNFLIELNIENTRHNEIQLIGNGEWCLALGGRDCSVQMHEQKLLELSLTQELLEKEIAACAATHPKKAEVLKGDLKVLREMEEQSERFGAAVKLNSVSTFESIVEGTNHFFMEVNTRIQVEHRVTEMVYSLKFKNPENQNEFFIVDSLIEAMALLSLHGKRLQKPERIFRFPSGAEVRINATNKAIQPHAGGVIMNWSKPLADEIRDDQGISIRNPDMGLFVHYKVAGAYDSNIALLISHGENRKDNLIRLGNILRKTELRGYDLQTNLLVHYGLIHWILGKDAMFKPSTSFMISYLAGVGALEKIIKDVDLEIAWKKIISEASADLKKVLSRKLTLITRPIGELIKDAHLSAGFIGFHLNRSWKISDSKIEWLRNPIFILADLYHYLNMEADPSLPPSEQIWDHDDEVLQKALSFYQELAKRTGSNPDSIELVASLNAGKSLNGIEAGLLPSILASHNGYQSGLELLKLLPYAGLNSGFYKLEVDEKLEAVIPEEFRKTETRDSLIKFLAPPPKASSDEIVAPMGGMFYSKEAPDLPPMIKVGDHFKAGQPLFIVEVMKMFNKISAPFSGTVKEILLNDSDGKIISKGQTIFKIVPDEVIHIETEAEITERKKKITLSLI
>NZ_CP006723.1|WP_001220672.1|1952185_1952524_-|YceK/YidQ-family-lipoprotein
MRIKPFFLILTVLQISIFLNCGTIFGIFQTYSYEKRMENRKSSMILGMPTDHSPIFAGVNFEYSMMKFLKAENIYFYLLILDFPLTILMDTVFLPISVPLSIHHYYKDKQQL
>NZ_CP006723.1|WP_002079097.1|1952792_1952927_+|hypothetical-protein
MQKFSDGFNISKIRSYKFFKILGQVQSNPLEFYGIYQAVSRIAL

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Crispr_ID: NZ_CP006723_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_5

2086560-2086650

Orphan

Consensus_repeat	Method
TAGGAAGTGATGCATTGAGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006723_5

>merge|NZ_CP006723|5|2086560-2086650|CRISPRCasFinder
TAGGAAGTGATGCATTGAGTTCAGGGAGTGAGACGCTTTAGTTCCTTCAAACGACCTGCAGCGACCCGTAGGAAGTGATGCATTGAGTTCA

>NZ_CP006723|5|5|2086560-2086650|CRISPRCasFinder
TAGGAAGTGATGCATTGAGTTCA	GGGAGTGAGACGCTTTAGTTCCTTCAAACGACCTGCAGCGACCCG
TAGGAAGTGATGCATTGAGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_001068719.1\|2087014_2087920_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP006723.1\|WP_000454161.1\|2079916_2081227_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|274940
NZ_CP006723.1\|WP_000706297.1\|2077654_2077849_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000725570.1\|2090188_2091235_+\|DUF1574-domain-containing-protein	unknown	unknown	gnl\|CDD\|369442
NZ_CP006723.1\|WP_001217817.1\|2093652_2094384_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001053850.1\|2088019_2088760_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP006723.1\|WP_000194184.1\|2074825_2075494_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187586
NZ_CP006723.1\|WP_001019287.1\|2076257_2076932_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP006723.1\|WP_000021486.1\|2092358_2092667_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000394962.1\|2094414_2095041_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001105364.1\|2075576_2076242_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP006723.1\|WP_000433870.1\|2086727_2087027_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000714033.1\|2082901_2084068_+\|lipoprotein-LipL45	unknown	unknown	gnl\|CDD\|380173
NZ_CP006723.1\|WP_000614724.1\|2095043_2096579_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP006723.1\|WP_001009422.1\|2088756_2090175_+\|MBOAT-family-protein	unknown	unknown	gnl\|CDD\|224610
NZ_CP006723.1\|WP_001113028.1\|2077950_2079048_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226785
NZ_CP006723.1\|WP_000873009.1\|2076944_2077625_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP006723.1\|WP_082271348.1\|2081545_2082802_+\|glucose-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP006723.1\|WP_154213693.1\|2079530_2079797_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000424879.1\|2092828_2093473_-\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_001068719.1\|2087014_2087920_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	9.60769e-179
NZ_CP006723.1\|WP_000454161.1\|2079916_2081227_-\|radical-SAM-protein	gnl\|CDD\|274940	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family. Members of this protein family are radical SAM proteins related to MSMEG_0568 from Mycobacterium smegmatis. Members occur within 8-gene operons in species as diverse as M. smegmatis, Rhizobium leguminosarum, Synechococcus elongatus, and Sorangium cellulosum. The function of the operon is unknown, but similarity of MSMEG_0568 to some cofactor biosynthesis radical SAM proteins suggests a similar biosynthetic function. [Unknown function, Enzymes of unknown specificity].	0.000366125
NZ_CP006723.1\|WP_000725570.1\|2090188_2091235_+\|DUF1574-domain-containing-protein	gnl\|CDD\|369442	pfam07611, DUF1574, Protein of unknown function (DUF1574). A family of hypothetical proteins in Leptospira interrogans.	3.05221e-138
NZ_CP006723.1\|WP_001053850.1\|2088019_2088760_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.16615e-73
NZ_CP006723.1\|WP_000194184.1\|2074825_2075494_-\|SDR-family-oxidoreductase	gnl\|CDD\|187586	cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs. Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.07629e-81
NZ_CP006723.1\|WP_001019287.1\|2076257_2076932_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	1.60159e-76
NZ_CP006723.1\|WP_001105364.1\|2075576_2076242_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	1.83686e-76
NZ_CP006723.1\|WP_000714033.1\|2082901_2084068_+\|lipoprotein-LipL45	gnl\|CDD\|380173	NF033165, lipo_LipL45, lipoprotein LipL45. Members of this family are lipoprotein LipL45, as described in Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 but found broadly in the genus Leptospira. Close homologs that are not lipoproteins by sequence are likely defective in their reported coding region.	0
NZ_CP006723.1\|WP_000614724.1\|2095043_2096579_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP006723.1\|WP_000424879.1\|2092828_2093473_-\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	1.45744e-146
NZ_CP006723.1\|WP_001113028.1\|2077950_2079048_-\|hypothetical-protein	gnl\|CDD\|226785	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair].	1.04102e-46
NZ_CP006723.1\|WP_000873009.1\|2076944_2077625_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	5.98011e-74
NZ_CP006723.1\|WP_082271348.1\|2081545_2082802_+\|glucose-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	2.94607e-38
NZ_CP006723.1\|WP_001009422.1\|2088756_2090175_+\|MBOAT-family-protein	gnl\|CDD\|224610	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane].	6.74501e-55

>NZ_CP006723.1|WP_000714033.1|2082901_2084068_+|lipoprotein-LipL45
MKKFLIVFSSVLTTGLLVFNACKKPTESSKAAATKGNSPSAVVVFSVGEAKILHADLTEEKAALGASLKTGDKVSTKQKSKVDIQFADGSAIRISENSVIDFDALSINSHGNSDTRLALVSGKVFAKVNKASKEDQFSVVTPTAIAGVRGTSFIVDRSKSDKAVVKVLEGAVAVAPRVVVLEGLSDEEIAKDEDLKKIQQTVASSEIVLEKNQASVVKADEKSLDVKDTSKISEKNITGVVKKLDNSGISKKEEEEIRTIVTVDKDTTEKMVRLNEESSGKVDEQKAAVLEAERKKLESEVAARQEEEAKKFKQVLISAPKELKSSKDIVNYYERIEKIIMMDGSSMIGAIVDQQGSTMIVHTEQGIKKINQADVQEVIYDFQTKAKF
>NZ_CP006723.1|WP_082271348.1|2081545_2082802_+|glucose-dehydrogenase
MLVSKLFSLFCNLENFIIRFIRLYSCIFLFRVLLTIGVVLILDSPLTADKKQPRRNVIKTKVESIGYVSVADGFQEPTDIQFFPGDPKRMIILEKRGKLIEVDLTTKVKTLRADFTGQIETRSEEGLLGLAFSPDFQTDSKFFVNVIVKEGGKDYSKILEFEWKEHLVQKIEHSKRMILKLEQPYSNHNGGQLAFGPDRKLYIGFGDGGGANDPYKNGQNPGTFLGKLLRILPNPHAAGAAYKVPEDNPFVHHPGFLPEIWSYGFRNPWRFSFDKLTGELYVADVGQNEFEEIDLIQKGGNYGWNIREGFHCFKKNPGCVDNFLIDPIHEYSREEGQSITGGYVYRGKEIPKLVGSYLYGDFVTGKIWALKQKNGKKISNELVIQVPFQISTFGQDISGEVYFTDFGSGNIFRIAKKN
>NZ_CP006723.1|WP_000454161.1|2079916_2081227_-|radical-SAM-protein
MEVTNSVRQISTISLLEEMEKKYKSIPIEAIVKQDILRQGIHFLKEVFEVTDPYKTKDYFIFSFDHIPLSELGDVKAPEEIKVSGGHFDLLPTVISTRNNPSSPYKVKKSSDGKPVLYLGETFLGNLEFPPLPAWYRHKTKNGKIPGEIAPVIEWGYLIYLTVFRNCQYFGKEEECAYCDINHNYRQQKNAGRPYTGVKDIEDILEVLSWIDSEDHTAKVYTITGGSVITSLKKKNEIDFYLDYATAIESKFPGRWMGKIVSQAWEIEDCKKFKEAGIQVYHPNYEVWDKNLFQKICPGKEAYIGRDNWIRRVVDSAEVFGPSYVIPNFVGGVELSKPYGFSTVAEAIASTGEGLDFFMSKGIMPRFTAWCPEPYTTLGTQAGPPLEYFCELLTVWKATFEKYNLPIPPGYGEPGPGKAVFSVSAFMDVIGYSGRN
>NZ_CP006723.1|WP_154213693.1|2079530_2079797_+|hypothetical-protein
MNAKFLLLGLFLSLNCYTGPYRYYDDCSLQYSIDCGRNFDYRNRSGYYPYRNHSNYYKVINNGRYRHNPFYVPSGRFHNFGRPSKWKF
>NZ_CP006723.1|WP_001113028.1|2077950_2079048_-|hypothetical-protein
MPDLLKDLYSKNVLERIAISFSKEIPSISEKEWIQKFKQKDWKQLELKQRIRRIGEVLAEVLPKPFPQSLLKITDSLEKSFEGKEIFLTIFLGDVVEILGIDYPKKSMQAIERITKLISCEFSIRPFLIRHPELTWKQMLEWSSHEHPGVRRLSSEGSRPRLPWGMGIPGLKQDPEKTLPILENLKDDKDEVVRRSVANHLNDISKDHPDLVLKIAQQWIGFSKERDLLLKHALRGLLKSGNPKALAIFKFDSDVKVKISNLKLKSKTVKIGEDLFFSFTVRSEQSKQTRLRIEYKIQYAKISGKTSKKVFQVEERLFQPNESTSYQKKQSFKQMTTRVHISGKHVLEIYINGNLKSKTDFQVIV
>NZ_CP006723.1|WP_000706297.1|2077654_2077849_-|hypothetical-protein
MKIVGTMKYQKNHRPSDFCTKPLFCGHYQNLNSILVSSSEKKISKSMSSYNFFSYAEFHRIEVK
>NZ_CP006723.1|WP_000873009.1|2076944_2077625_+|TIGR00266-family-protein
MKYEILLKPDFPIVQVQLNDGESIRAESGAMVAMSPTVKMITKAEGGVFASAKRALLGGESFFQNTFKSEGGTGTLFLTSATQGDIEYRKMNGEDLILSRGAYVAGSESITIDSKWGGFKGFFSGEGLFFLKVGGTGDLFFSSFGAIHTIDVNGQYVVDTGHIVGFEGTLDYTIQKVGGLKSLFLSGEGLVAVFSGSGKLYIQSRNQNSFVSWANQWRRVEKSSSD
>NZ_CP006723.1|WP_001019287.1|2076257_2076932_+|TIGR00266-family-protein
MNIEIISKPSYSFVKVLLNGGESIKAESGSMMSMSSGITIQTHKAQQGGFFKSLKVAFLGGESFWMNTFTASSGNGEVLLAPTLPGDVERIELSGTVYVQSSSFLASSPNIEMDTKFQGLKGFISGESLFFLRLSGNGFLLISSYGGIDVLNVDGEMIVDTGHIVAFEEGLNYEMTKFGGWKSFFLGGEGFVARFKGKGKVWIQSRNVPSLGSWFRNQLPPIKR
>NZ_CP006723.1|WP_001105364.1|2075576_2076242_+|TIGR00266-family-protein
MNYEIIHKPSYSFLKVKLSPGQTIKAESGAMVYMTPGIDVETKMGSGFLSAISRRFFGGESFFFNVFKASVTGGEIGLAPELPGDVVGIDLTDTGLIVESGAYLASDETISIKPMFGGIRSFFGGEGIFLLEAFGNGKLFLNAYGGIIPIDVQGSYTIDTGHIVAFDKSLQYKIAKAGGSWKSTFFGGEGLVMEFTGHGRVLIQTRVPSGFLSWLTALLPN
>NZ_CP006723.1|WP_000194184.1|2074825_2075494_-|SDR-family-oxidoreductase
MTQRNILITGSNRGIGLELTKQFLSQGDQVFALCRKSSSELIHLKPTRIFEGMDVLNSNSIRDLPSKLLDTKIDILINNAGILIPDNLQSLDEENVFTQFLVNALGPLKVVKVLLSSLKKNAKLIFLTSRMGSIADNNSGSYYGYRASKAALNAIAVSLAKDLSPRGISVGIFHPGMVATRMSGGQGISITESVEGLIKRIESLNLHNSGKFFHQNGEELPW
>NZ_CP006723.1|WP_000433870.1|2086727_2087027_-|hypothetical-protein
MEPVENSHLGPPSEEIKKLIYHSIIRFLSNRETPISRSEIKELLEKTINLIPDLEAHWAEINRFGKNKMILHWKKKVMLIDMEEILESIDLLWNQRFDI
>NZ_CP006723.1|WP_001068719.1|2087014_2087920_-|lipoyl-synthase
MNPLKKKPRTHSLQNAPEKPDWLKVKLAFPDPKNNPVAIVRNSLEEKKLNTVCESASCPNLNHCWSRKTATYMLGGDICTRRCSYCDVASGKPFPLDPEEPKRIAESSIALGLRHVVITSVNRDDLEDGGAAHFAKTVKEIRKGLPDCKIELLIPDLKVKQEALEIIFECNPDIFNHNLETVKRLFPEVAPQKRYERSLDVLKIASARGFLTKSGLILGMGETLEEVKECMQDLASVGVSLLTLGQYLQPTSTHLPVKEYVVPQVFKDLRIYGKSIGFKGVFSGPLVRSSYHADEQISWNP
>NZ_CP006723.1|WP_001053850.1|2088019_2088760_+|rRNA-pseudouridine-synthase
MNLSEMEEFMQHLEIRLNRFLADCGLGSRRKTEELIQKGHIEINGKRVTNLGTRIDPEIDVVSYLGDVVKPIVESKKILIFNKPIGYLCSHADRFHEKTIFSLLPSDYKNFKIAGRLDLNSRGLLILTNDGALAQKITHPSNGSEKEYLVTLKHDPGEKLIQAAFQKGILDAGEILHAKMVKLVPGKKCVYRVILEEGKKRQIRRMFRWFGVSVVDLQRIRIGPLKLEKFNLEEGQYLLAETGIWK
>NZ_CP006723.1|WP_001009422.1|2088756_2090175_+|MBOAT-family-protein
MNFISIEFLLFFLVFYLLYWNIPAKSRKYLLIVGSAFFYSIFSLNFLFHLILVVLINWCLYRYFYEKSWYVKSVVVFNLLNLGLFKYFYLLMEFIGFIFSIPTLQEKTSLDVKFSALFGLAGFEVILPATISYYTFQLISFAVDSKRENFDKKVSLTGFFSFLFFFPVMIAGPILRFDQVRKQFENPTMTPSKLIDGLWLFLRGLVKKGLLSAAILPLIAPVFLSPKDYSGIALLLTCFLFAANLYFDFSGLTDMARGIGKLIGFELPENFKAPFFFQNFGDLWRRWHLTFSLWIRDYIYIPLGGSRKGEFKTSINLIVTFMLGGLWHGANLNFLIWGLLTGIYLSLERLFEVQNWKVFPEIPYIKPILRYLFVLLVYSISWTFFFTPNFNSAISSIVRILTFQKGQSLTGLETGMYMLFFLFLFHVSEEWPERYSVPEKWRVGLLPILGLLILFIMVGMNAGNADFFYSRF
>NZ_CP006723.1|WP_000725570.1|2090188_2091235_+|DUF1574-domain-containing-protein
MKKIYIYYPILFLGFVFCLDKVFTLEYFQKNFIQAGNTVYYTQRKSLFEKLIRDKDLEVKSLALAFGDSRAYPYSSMGIEQKLQKDWVLYNFSGPQAVPVYGLYWFEKIIKQGLKPKLVFYVVSPEGFDDTKGIFYDPFLKYGADDDFLLKYMDQISFEDRKKLFLDRLFAVRRINPDLKLFIKRFQEKKLSEYDPAFNTDYMVLNLKRGEQFAYTTFVNDPDRLEKDAVRIRNLYLSTFILGTTQFFFVEQFLKLAKENDVKVYLIWPKVYETYRKRYYELEMEKSWWPKIENLAKRYSAVPVDLNTQTSCDLFYDASHQSIMCFLESMKLMIDDYYGFKKIPLYHP
>NZ_CP006723.1|WP_000021486.1|2092358_2092667_-|hypothetical-protein
MSIEYHTSTKLTIEQIQILETSILNNGNYILLETSLQNKFQSENLKFRFNDNHGSFYVEVVQTENGLIVSFRISTKKDKETFLNLVITSLKQKGIHCIFEEI
>NZ_CP006723.1|WP_000424879.1|2092828_2093473_-|fructose-6-phosphate-aldolase
MELYLDTANVDEIKEIASYGLVDGVTTNPSLIAKSGRSFKEVIKEICSIVSGPVSAEVLSTKFDGMMKEALELVEIAENVVIKVPLIPEGLKTVVELTKRNIPTNVTLCFSAPQALLAAKAGATFISPFIGRVDDTSWDGMELISEIREIYDNYGYDTRILAASIRGPIHLKESALRGADCATMPHSAFLQLFKHPLTDIGLEKFLEDSKKLKW
>NZ_CP006723.1|WP_001217817.1|2093652_2094384_-|hypothetical-protein
MRIFALLFCLFLISTAELFAQLPDETPTPNRRQPTNTTQQAINLLEGFAESSWGESYANLREKFLSLSTNPQNDEKVEIVYEDKEKTLLIRRNGILYSYRFYSTPKIVTESRPKDQRQPTTENKSEIEEENHSAPGVLFSVGVLFRYLPGKEVQQKLEQKYGKPKKESLAENKIGGAVLWEKTDEKQSPPRGGYVVQWKEAYKKMPFTRRVDYFSSSIKFQIEKEYKEFFNAEEIKTLRDLIP
>NZ_CP006723.1|WP_000394962.1|2094414_2095041_-|hypothetical-protein
MEFLLYLIFFGIVSILLVLASYYFKLLFLSGRESFERLELVDWIRIVPNELIKLLESGGSLQYAGIAFFVSAFVSYLWTLLGGMIGAPHYADSFGNYFFLSFLLPVTLLTTYGILVELVLKDLPSTNPNHFLVLFLEQEVAILSGCSISVIASNLAVYGLFHEISFLFVFPNISIIAVLLVLRWNGKVKIGGIQFSGSKNRSFQEDSE
>NZ_CP006723.1|WP_000614724.1|2095043_2096579_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MIQIKRALISVSDKSGLVEFAKFLNQNGVEIISTGGTLKLLKDNGIAAIAIDDYTGFPEILDGRVKTLHPKVHGGLLGVISNPAHKQKMEELKIPKIDLVVVNLYPFLKTVSKPEVQLEEAIENIDIGGPSMIRSAAKNYKHTLVLTDPNDYKEIQNLISSSGISEEISASYMRKAFSHTAMYDAAISSWFYKQSGEVFPDVLNLSFIKKQKLRYGENPHQAASFYEPLFTKSDFSPLQGKELSFNNMLDFDAAFHISSLLPENTVCIIKHLNPCGIAYADNPLEAFQLARRTDPISAFGGVIGIKGQVNGELATSITENFVEGVIAQKFTQEALEVFSKKPNIRLIEIQDFKEALDELDLRPIHHGLLIQDRDYTTITEKDLKVVTKKQPSPDDIRGLMFAWSCVRFIKSNAIVYTEENATLGIGAGQMSRVDSVQLGANKALNVGLSVVGSYVASDAFFPFRDGIDALAKAGAKAIIQPGGSVRDEEVIQAADEHGLIMVFTGMRHFRH

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Crispr_ID: NZ_CP006723_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_6

2180892-2180997

Orphan

Consensus_repeat	Method
TTGGGTTGTTCGAGAAACTCAACATCTCACTCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006723_6

>merge|NZ_CP006723|6|2180892-2180997|CRISPRCasFinder
TTGGGTTGTTCGAGAAACTCAACATCTCACTCCCTGAATGCCGATCCTTAGAGAGGCATTTGCTGAGTTTTTTGGGTCGTTCGAGAAACTCAACATCTCACTCCCT

>NZ_CP006723|6|6|2180892-2180997|CRISPRCasFinder
TTGGGTTGTTCGAGAAACTCAACATCTCACTCCCT	GAATGCCGATCCTTAGAGAGGCATTTGCTGAGTTTT
TTGGGTCGTTCGAGAAACTCAACATCTCACTCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_138984322.1\|2171008_2172150_+\|IS3-like-element-IS1501-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP006723.1\|WP_000877551.1\|2182513_2184523_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
NZ_CP006723.1\|WP_082268429.1\|2178138_2178645_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_002070937.1\|2175640_2176348_+\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|376842
NZ_CP006723.1\|WP_000470532.1\|2193255_2194443_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226346
NZ_CP006723.1\|WP_000627663.1\|2181145_2181706_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|133475
NZ_CP006723.1\|WP_002109465.1\|2185429_2187799_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP006723.1\|WP_000553425.1\|2191770_2191968_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000716863.1\|2176506_2177025_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_002127041.1\|2191969_2192884_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|180488
NZ_CP006723.1\|WP_000249791.1\|2178764_2179097_-\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_045192154.1\|2173869_2175477_-\|hydrolase	unknown	unknown	gnl\|CDD\|119353
NZ_CP006723.1\|WP_000708679.1\|2188057_2188411_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000594556.1\|2177037_2177604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_061237879.1\|2172700_2172934_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000513102.1\|2188945_2190964_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP006723.1\|WP_000842388.1\|2188494_2188965_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP006723.1\|WP_002109217.1\|2190971_2191721_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_CP006723.1\|WP_000116253.1\|2179165_2180752_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_CP006723.1\|WP_001293682.1\|2172941_2173889_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_002109465.1\|2185429_2187799_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.99735e-21
NZ_CP006723.1\|WP_000877551.1\|2182513_2184523_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
NZ_CP006723.1\|WP_002070937.1\|2175640_2176348_+\|queuosine-precursor-transporter	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	3.47708e-44
NZ_CP006723.1\|WP_000627663.1\|2181145_2181706_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|133475	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.	3.24318e-30
NZ_CP006723.1\|WP_000470532.1\|2193255_2194443_-\|hypothetical-protein	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	1.91698e-77
NZ_CP006723.1\|WP_002127041.1\|2191969_2192884_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|180488	PRK06249, PRK06249, putative 2-dehydropantoate 2-reductase.	4.28143e-72
NZ_CP006723.1\|WP_138984322.1\|2171008_2172150_+\|IS3-like-element-IS1501-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.85613e-57
NZ_CP006723.1\|WP_045192154.1\|2173869_2175477_-\|hydrolase	gnl\|CDD\|119353	cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.	2.37667e-101
NZ_CP006723.1\|WP_001293682.1\|2172941_2173889_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	3.03996e-70
NZ_CP006723.1\|WP_000842388.1\|2188494_2188965_+\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	2.71998e-48
NZ_CP006723.1\|WP_002109217.1\|2190971_2191721_+\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	2.3623e-08
NZ_CP006723.1\|WP_000116253.1\|2179165_2180752_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_CP006723.1\|WP_000513102.1\|2188945_2190964_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.07057e-151

>NZ_CP006723.1|WP_000116253.1|2179165_2180752_+|2-isopropylmalate-synthase
MSVRLIDCLKNKTQKIGSRIFCEKDMAMDLKDYVRIFDTTLRDGEQCPGAAMTENEKLEIASQLATMKVDIIEAGFPVSSPVQFQAVERIARETEGPMIAALARAMKADIEAASKALQPAKKRRIHTFIASSPIHMKYKLGKEPKEVLKMAVEAVTLCRQFVDDVEFSPEDATRSEPEFLRELCEAVIAAGATTINIPDTVGYTTPAEYGGLFKFLLSNVRGAEKIIFSAHCHNDLGLATANSLAAVQNGARQIECTINGIGERAGNTAMEEVVMAMRTRKDTFGIQTQIKTEEIARASYLVKTITGMLVQPNKAIVGANAFAHESGIHQDGVIKHRETYEIMKPETVGLSSNRMVLGRHSGRAGFKDRIVKLGFSPQVEELEAAYQRFLEIADRKKEIYDEDIRALFSEEARKSTGDRFQLEGFTVSTGTKSTPTAGVRILIDGHVREESATGDGPVDAIYKAIQKTTGMDPEVSRLVISPVTEGQDAMAEASVTLEYKGDRVVGKGSSTDIIEACSRAYISALNRL
>NZ_CP006723.1|WP_000249791.1|2178764_2179097_-|glyoxalase/bleomycin-resistance/dioxygenase-family-protein
MVQFYASNFQSTDCTVSANLYSELFGLKIVVSSGTHSELFWPDKKGILIFSKESKNCPVSPGTLTFRIDKEEWEDFKTILFSRGFIVEAQGPRYVSVLDPWKNRIWFYFS
>NZ_CP006723.1|WP_082268429.1|2178138_2178645_+|hypothetical-protein
MVQKGKNLEKIPLVSLDEFFQLWLRNQKYPKMAGINFEKLFEDKEFQYFGKIEWNRFIPISKWRFFKIQKEILSKEFPNYESVFRQDFSGHFQNQILPESDRKLYLDIKAKVIDKEYCIDPYQYSYSLVENKIVLTIKWNVESCEELILLKDKTYRLVYDLRKKQFEE
>NZ_CP006723.1|WP_000594556.1|2177037_2177604_+|hypothetical-protein
MIKNKSFLAFLMIFVSFGCGSRDTFETIQQGKNLEKIPIISMKDFFQLWIKNQRKLKFKTNVTVLLKDSEYVYFGKNDISGYSWKSRFFKLSVDLLKKEFPNYESFFAEDLERYYWDHMVSKENRDLWTYAEDKTRQECKPEYFYSLSDQKVALQVHWKVDSSCPKLSVFQGRIDKIYYDLNSGKISQ
>NZ_CP006723.1|WP_000716863.1|2176506_2177025_+|hypothetical-protein
MKKIAIPIFIFYFLISINQCRRTFHIGILNDSKYEITLTLKLKTPVSKSEFLTTILEIPSDADNHHLYSTIYFRVPANDSNRLDSSKLEAISSNEISYNNTLGEIKLKLQPRFAYFFLNSYSSNEHYVHSIENRFSEIRIDSQNTSSILRQNVIRSLFPYNENCECFLWIIK
>NZ_CP006723.1|WP_002070937.1|2175640_2176348_+|queuosine-precursor-transporter
MQLSKSVKLFIILNAFFLSFLILAEVTGSKLFVSFGFTLTMGVIPFPVTFIVTDLLNEYFGRKGVRFTTLVGMVMIFVAYFLLVLDMSIPAAPNSPVDDHSFNVVFGNSGKVIVGSIVAYLIGQLIDIQIFHFLRVKTNNKYIWLRATGSTIVSQLVDSFVVIYIALGGGKLSFQELNQISTNNFLYKCGVAIAITPLIYVAHSLIDWYLGPMAKTMIQEALEQGRSDVEPISPG
>NZ_CP006723.1|WP_045192154.1|2173869_2175477_-|hydrolase
MAHEQEDIQPISNDSLKPEPKYKILVYSLSWFLLSALSFFLGIHLLKKGDSALSNENFRSSSIGIVDEIRNFFPNQKTTNSSETENSSSTQSESKSNFFSFNKDAQDMPEATLLPKADENTSFRASTWFSDYEAMKKTVHLYNEIHPFIYGMKGRETNNGDLYSSWGSSQKHERISELRKLNPNIKIIPTIFRWENKYEKISENIGMNGRNDIRDKHLSNILYELDTYGYDGIDIDYEGMSCEKKEKFEEFIVILSKEIHKRGKILSVAVHPKTPAKKESMKVCKGLKDKIKMDYAENWRGPMTHDYAFLAKYADRIKIMAYELHPRKYRNPGPGPQAPNTWIKSIIEYAKARVPAKQLYMAIPTYGYDWALNCNSKIKSVYYQDAVRKKEFGIHRQPTNIDQILASTKNSSSWINLSKFSWVHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQLISDNDPGINDYLELLVSNKLPPVEKIKEPVQDPNKSKVEPSNPEEAKIDSQDHSEKFVGKQG
>NZ_CP006723.1|WP_001293682.1|2172941_2173889_-|threonylcarbamoyl-AMP-synthase
MSENKVNTLITDSTSEAAKILLKGGLVVFPTETVYGIGASAFDIDACKRIYKVKNRPSDNPLILHVANFSSLKDCGEIDDRANLVFQKLSPGPITGIFKKKNQNLFTAGLDSVAIRIPSNPTALGFLEFCKVPVAAPSANFSGKPSLTKIEYILEEFIGKVDCILKGEEPQIGIESTVVDFISKPPILLRPGFIDKNDLSEILPDLQEMKSLDKNSYTTPISPGLKYRHYSPNCKVIFKNSLKGIPKEFAQIGFHFESNSVYQVLVSSNKEYMKEIYSFFVECDRRGITEAWCEIPKEEKWKEVLINRISKAASK
>NZ_CP006723.1|WP_061237879.1|2172700_2172934_+|hypothetical-protein
MDRVVECKFYRGICRNSDGFILRSKCICKFMENAEFAKIFFVKFTLELLKVDINCFHRPVPIKQKENLFFNNSMVEV
>NZ_CP006723.1|WP_138984322.1|2171008_2172150_+|IS3-like-element-IS1501-family-transposase
MKGRRKYSPEFREQAVNRTLNGSFTIKEVAESLGVSYFVLRQWKAEHLKKKETEQPLPDKQLKESEELKRLRKENVRLKDENANLKKVCGHAFPRTESRLKFMKSNCLEHSIGSMARVLGVSRSGYYKYLNRHKDRSVAPDLTNFLQEKWLKSRKNYGFKRLFQEVKKSNLPYGARKVRKAMKHCKISGKQRKQFRPLTTNSKHGGRIAPDLVQRKFHPNEQNRIWVSDVTFIRTSFGWSYLCVILDLYSRKTVGWSLSDRNDSQLVCDTVLKAVLSRNPRKGLIFHSDRGSNFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLKREIEYNTFYNIEEAEHLLFDFIEVYYNRFRFHSTLGYMSPEEFETNIA
>NZ_CP006723.1|WP_000627663.1|2181145_2181706_-|N-acetylmuramoyl-L-alanine-amidase
MITFNLNIKQDFLTPNPHSRPGTKIKEVKGIVLHWTASPKATAQNIRDYFESLKAPDGRFASAHYAVGLVGEIVQCIPLDEIAYHCGSKTYTPEKEKILGPDSPNFYTIGIEQCVQDRIGKFTKKTLDSAAKLTAQLCSQYNLGIDDLWTHQGIVGWKDCPRWYNTHPEDWIRFKKRVGDLLKKPN
>NZ_CP006723.1|WP_000877551.1|2182513_2184523_+|NADPH-dependent-2,4-dienoyl-CoA-reductase
MKYSEIFQPIQIGSIVLPNRVIMGSMHLGLEGMPMTADRMIAFYGRRFDGGASFITTGGIAVNHEGRGSNIFFNFQREEDCKELSVVANSLKSKGIFCAQLFHAGRYAYHRELVAPSALRAPINRYVPKALSEEEAWKTVEDFGDSALKAKEVGFGAVEVMGSEGYLVNQFFSPVTNHREDFFGGSSEKRMNFAIEVMKNIRKKVGKDFPVVYRMSGIDLIPGNPTFEEVILLAEKLKEAGADALNIGIGWHESRIPTISMLVPRGAWAKISGKIKAKVKDIPIIASNRVNMPETMSRILKDQEADILSMARPFLADPDILNKIKANQEERINTCIACNQACLDHTFKEQMVSCLVNPSANRELELSKLKKADKKHVVVVGSGPGGLESARISAIRGHKVTVLEATDKIGGQLNLAAQIPGKSEFLETIRYFKNELKNLGVEIHFGYQATLDSILALKPDAVIFATGVKPREFTLPGIEKKKTASYADYLSGKFQPGNKVVVIGGGGIGCDVAHKLTEEDSSTIDSYFHRYNVTSYTNAQIQKEKPNRKVSIFRRSGKIGSGLGATTAWALLQELESKEVGFYTSLSYKEVTDQGLVIETKKDGAQTIECDSIILCAGQLSEVSLYEEFKSKVPEIPSYLIGGAKDASGIDAKRAMLEGFEAAIEIGVN
>NZ_CP006723.1|WP_002109465.1|2185429_2187799_+|SpoIIE-family-protein-phosphatase
MFQKIIITLSLLLYYNCLYKIQEENFQDLSGIWEVYVSLVSEDLQTNKNLKQKLDRWEPIPIPSNLKDFIKWNSSNEEILLRKQFDFRNVADTSFSISLGKISDQVRMFWNGQELSEELFTEYKNSIPQGYDRTRIYSISENKIFKKNEILIYIKPYFDYEYGILSGQLEIGPSAIIWKRFYLREIGGLLIFGSFLLIGGFFLFLSWREKKYGENFYFGFFLILFALFQVSLSDLKYFTGFKIIYLKKIEYSFLVFLFPLFCRFLNSLFGKAIGRFQIFLEIMVLFLFFWILNAESVFVLDAINRYALQISWIGFVYLSLKILIPNLKKSFESRTIFLGIIFLLICVGIDVLSQRGMLKMIRLSGLGVSGFLGFLTLILANKFVKMKEKLKSWNSVLETAIRERTKELSSSLEEVKNLKEQQDGDYFLITLLFQPFLSKNLETNYAQIDIHRKQYKSFQFKNRSYEIGGDVVLRESVFISGVEYQVLINADAMGKSLQGASGALIFCSIVKSFLQTQDYEFRNPENWLFLLYSNLQAVFESFDGSMLVSGILSLYQISTGDLFFINCEHPPMVLSRNGKTSYLKETAVLRKIGFPDSDSKIKVEYYKLLPGDTILYGSDGREDLYIQDPFYSSQKQKSSVPDLFFKLIQNSIPKLEDLEFKIQEKGTLSDDLSFLRIQIGPETVFKKNFSEFEVLIRKGNEFLQSGNFQKACFQYARASILNPGDLKLSRSVLLLAKKSGNFKLIRFFSEKILLRTDGIQIGKHPFHKTASLRLKSAYNNNIIHNLIKK
>NZ_CP006723.1|WP_000708679.1|2188057_2188411_+|hypothetical-protein
MKIYSGDIISSKLEKPFLFVTKNGFKKKILIQEPRKVLETSLANSLEKNVLIISYNLLLDHTGDSKLAENDCLSFSNRFREIFAQDSWFFLSNRIETFLKEREQDKFYFHYDSKIKF
>NZ_CP006723.1|WP_000842388.1|2188494_2188965_+|peptidylprolyl-isomerase
MKSRVVTFHYTLHDTEGNLIDSSEGKTPLSYLEGVGNIISGLEEEMKKMETGEKKKINVSAEKAYGIKDPDLIFDVPRSQFPPNEDLQIGMMFQTDEPDKVFTITELQEESVIVDGNHPLAGVDLVFDVELTGIREATQEEISHGHVHGEGGHHHH
>NZ_CP006723.1|WP_000513102.1|2188945_2190964_+|ATP-dependent-helicase
MGITIIEVSWKEELNPAQMEAVLTLDGPVLVLAGAGTGKTKTIVSRLAQLVASGIPASSILLLTFSRKAAREMILRASMIGNKKCSEVQGGTFHSFCNGVLRKFAPVLDISSGFTILDESDCLDVFQFLRNEKNFGKTKSRFPSNETLVSIHSEIQNTGKPLSSILEKDYPLFLQKANDISQIFEDYKSYKKEQSLLDYDDLLYFTRELLTNHPGVRNALSEKYRFIMVDEFQDTNKIQAHIACLLASEHSNLMVVGDDAQCIYTFRGASVRGILDFPKIFPNTKTIFLEKNYRSTPSILNLANEVLKNFSEKYDKYLFTDNENGPLPQVLQFEDELEEAEGISKILLQKREEGIPFQKMCVLFRAGWNSNQLELVLAKRNIPFVKFGGKKFIETAHIKDLLSLLKLLVNPLDSVSWIRTLKLIPGIGNAKANSILDKIRKSSGSFEVLSEENGTTIDKYISPLYHLYQKYKETHSEVKKMVSEFIDYYRVLLEKNYDDSKRRSEDLDAVLGFSLKYNSLSDFLSDLTMDPTSLSLDKMKPDDTDSDLLNLSTVHSAKGLEFDLVFVLNTTEGIFPSSKNTNIEEERRLFYVAITRARKELYLTRPSLAQSRSGPYYTKLSRFLSEIQFPEKVYELKLMSGKSVSKNPFANQGSFVKNTNDSFSRIQDYFGN
>NZ_CP006723.1|WP_002109217.1|2190971_2191721_+|M48-family-metallopeptidase
MFSKFQNRTEKIEPTFVLNILEKRIFEFCKLPNGKFLKGKKFEIKFYPYSNLGSSIRVSSEKLEFKIHSSYLSSELENLEAVIDLLLFKLLKYPIPDQLEETIRKFYENYTDQKISSNRNRKRVQLSSSQNKKLRDILEKLNDSYWKIDLSNLEIFWGKYRSTTRLGHYDPTHNMIVINPILSAQSVPDFVLEYIVFHELLHVYFPVVRKKGRNIIHGKEFKELEKKFLHYRQANFWLKSKHFRKMILH
>NZ_CP006723.1|WP_000553425.1|2191770_2191968_+|hypothetical-protein
MHPKVFETLYIRKNYVDEELRKYLKEVQGLNYRSLNDYDRGVYDGYVQAITEILKKIERKFSQAG
>NZ_CP006723.1|WP_002127041.1|2191969_2192884_+|2-dehydropantoate-2-reductase
MFRILVLGSGAIAGLYAGKLVQAGCKVDFWVRKNSYELKRNGFQIESAPWGNFHYKVEKIFESIPKNLKEYDLILNCLKCLPDINLKKILGEKIPPNLPILLLQNGIGIEEPVSILYPENEILSGLAFVCANRLDAGKILHLDYGELTIGSWNRNPSFICDQLVNLFNSVGVPTQNTNTIRQARWKKLMWNAPFNPISVLCGGKNTLEILENPHSCKLVIEIMKEVQTLSKLDGAEVSSTQIDIFLQMTKTMKPYKTSMLLDFEAGRPMEIEAILGNTIRIAEKNNLEIPHIQTIYSLLNLYES
>NZ_CP006723.1|WP_000470532.1|2193255_2194443_-|hypothetical-protein
MFIQFFYRLKAEGIPVTTGEFLDFLKFIDYYTTHKKAWIGLNELYRFSRACMVKDIKYFDAFDLVFSEIFGERGALKPELKQELFNWLNEIFDNPNKLPPSLIPPDQLLEELKKRLEEQKGEHHGGNKWVGTGGSSPFGHGGKNPEGVRIDGEAGNRSAIFQALERRYREYRTDEQLDIRQIKTALKKLRNLRKEGVSEFHLPKTIDSTCKNAGDIQIEFERSRKNGLKVLLLMDTGGSMTSHAERVNKLFSASHQINHFKEFHYYYFHNIIYDAVYPKANMRTPISLQRMFKKHSEDTKLILIGDAYMAPYELLDSTYGYYHSRFRMDFRLPENPESGLDSLKKIRRHFRDSIWLNPEPIKYWDAPTIQEIGNQVPMYFLSLDGLEKGIKKLLN

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP006723_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_7

2877477-2877643

Orphan

Consensus_repeat	Method
TTTTTTAAATTTCCTATTTCTTTAGGAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP006723_7

>merge|NZ_CP006723|7|2877477-2877643|CRISPRCasFinder
TGTTTTAAGGCTGCGATTTGTTTTGGTAACATCGTAAGTTGGTTTTCTTCTAAATATAATTCTTTTAGATTTTTTAAATTTCCTATTTCAGGGAGTAGCGATATAAGTTGATTTCTGCCTAAAACTAAATTACGTAAATTTTTCAAATTGCCTATCTCTTTGGGAAG

>NZ_CP006723|7|7|2877477-2877643|CRISPRCasFinder
TGTTTTAAGGCTGCGATTTGTTTTGGTA	ACATCGTAAGTTGGTTTTCTTCTAAATATAATTCTTTTAGA
TTTTTTAAATTTCCTATTTCAGGGAGTA	GCGATATAAGTTGATTTCTGCCTAAAACTAAATTACGTAAA
TTTTTCAAATTGCCTATCTCTTTGGGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000068277.1\|2881479_2881944_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000465519.1\|2875345_2876482_-\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143598
NZ_CP006723.1\|WP_000371205.1\|2870257_2870968_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000687992.1\|2878245_2878779_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP006723.1\|WP_045192545.1\|2890875_2891172_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000788716.1\|2882148_2883216_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP006723.1\|WP_001050108.1\|2888898_2890167_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|380169
NZ_CP006723.1\|WP_001010039.1\|2865145_2865754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_002091036.1\|2880384_2881248_+\|SH3-domain-containing-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_002072887.1\|2867462_2867681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000051773.1\|2874772_2875294_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP006723.1\|WP_000698132.1\|2872995_2874003_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP006723.1\|WP_045192542.1\|2883272_2884367_+\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223260
NZ_CP006723.1\|WP_001132139.1\|2887751_2888798_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001047036.1\|2866460_2867447_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001968433.1\|2863709_2865146_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP006723.1\|WP_045192547.1\|2891172_2891832_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000614666.1\|2862510_2863692_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
NZ_CP006723.1\|WP_002079374.1\|2871328_2871829_-\|Ig-domain-protein	unknown	unknown	gnl\|CDD\|310150
NZ_CP006723.1\|WP_000993258.1\|2885958_2887458_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000465519.1\|2875345_2876482_-\|carbon-nitrogen-hydrolase	gnl\|CDD\|143598	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	2.03923e-19
NZ_CP006723.1\|WP_000051773.1\|2874772_2875294_-\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	1.59265e-08
NZ_CP006723.1\|WP_000698132.1\|2872995_2874003_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.31006e-14
NZ_CP006723.1\|WP_001050108.1\|2888898_2890167_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|380169	NF033161, lipo_LipL41, lipoprotein LipL41. Members of this family are lipoprotein LipL41, as described in Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 but found broadly in the genus Leptospira. Close homologs that are not lipoproteins by sequence are likely defective in their reported coding region.	1.38802e-10
NZ_CP006723.1\|WP_045192542.1\|2883272_2884367_+\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|223260	COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis].	1.43684e-148
NZ_CP006723.1\|WP_000687992.1\|2878245_2878779_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.00905e-15
NZ_CP006723.1\|WP_001968433.1\|2863709_2865146_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	3.14215e-15
NZ_CP006723.1\|WP_000788716.1\|2882148_2883216_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	5.6757e-17
NZ_CP006723.1\|WP_000614666.1\|2862510_2863692_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	5.9882e-43
NZ_CP006723.1\|WP_002079374.1\|2871328_2871829_-\|Ig-domain-protein	gnl\|CDD\|310150	pfam05345, He_PIG, Putative Ig domain. This alignment represents the conserved core region of ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to (pfam02494) and (pfam00801) suggest an Ig-like fold (personal obs:C. Yeats). So this family may be similar in function to the (pfam02639) and (pfam02638) domains. This domain is also found in the WisP family of proteins of Tropheryma whipplei.	0.00252575
NZ_CP006723.1\|WP_000993258.1\|2885958_2887458_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	2.93677e-106

>NZ_CP006723.1|WP_000465519.1|2875345_2876482_-|carbon-nitrogen-hydrolase
MFFKRSYLFYFLFLILIFYGIWSYTDRSSWEQTPDSRLKRIESFGKDLKKGNLLGIQPWMYPIDYSNEINFSKKIQSYLEEASKKGYINPKTIVVFPEYLGTWLVVAGEKTSVVRSDKLEDSMRILILSNPVSFIFNFFKAQGKDKIRDALFRMKAEKMLSIYSNTFSGMAKKWGVTIVAGSILLPEPYILEGKIQIRNGALKNVSYVFLPDGRVAENSPEKIYPIEDEKSFVAAATLKNLKIIQSPMGKIGVLVCADSWYPEVYEIFKKQNVNFVVVPSYVAPDGAMSEVWKGYNGSKNPTDIRLEDVHRISEGEAWLKYALAGRILKSGATHGMNVFLRGSLWDLGSDGEIILVHRSMVRTFPKIYGASIVNLWLD
>NZ_CP006723.1|WP_000051773.1|2874772_2875294_-|hypothetical-protein
MSLFLFETFSDNFQSKHNEVTSGKWFGLTSLNLEGKPFAAFFEGSLVLKLGAEKIAEIISRYPGAKLFDPSGNNKAMKDWLQIPAEFEQDWLNLAEDALVFAEKSLSAVAVPAKKKAAPKKAAKKKAPAKKKSPAKKKAAKKKSSAKKAKMKPKAKAKKKVARKKTAAKKRKR
>NZ_CP006723.1|WP_000698132.1|2872995_2874003_+|alpha/beta-hydrolase
MKILKWILGIIGTFALFLVVTFYAETPKYEYKSVPLYSNFDSYYREKLQISRSKKVRPGNEEKLVRYSADKTDFSILYIHGFGASRAEGEEVTDQLAKDFKANLYYVRLPGHGTNLENHRDTTFEEILQDSETAFLECEKLGKKTILIGTSMGGLISTYLAAKYPEKVHALVLVSPFYDFTNPFSVIYQFSWGKDFANIVMGKIRKSTEEEKRNPASAFWYRDQYLAAVQNLSDLREFILGTDPFSKISSPILLFYYYKNEKNQDVSASVSSMLNALKKVNENGKASPLNKAVKVEFGNHVLFSKYMKSDKDLILKETETFIQNVFSLNKNLSHN
>NZ_CP006723.1|WP_002079374.1|2871328_2871829_-|Ig-domain-protein
MDLLLLQEVSTPPCPGGVTMMDIPSTINAQVGTSVKSPFLIQFSAGSVNHETLMKNKNCNFSELSVTNLPAGLTLNSTTGAINGAPTAISAATTVTFSAKLKANNSTPITFTKTTTVTVFAAGSLTCNTAGAALGCNNAALPYSCPNSNFCYSTYSSCKAASECGY
>NZ_CP006723.1|WP_000371205.1|2870257_2870968_-|hypothetical-protein
MDPFEKIVNRYGGWELWNRLDFVEFYFQSLSGPLPFLKGLGKTFNKHGKVRVFPKEFITEFLDYPNPGKKIIFKNGKVGIVNISENLSEFGLSNYKDSFSGLKKYRLWNPLDVSYFFGYATTQYVSIPFILKEYSVRKFELENGDFQIEAEFPSYLHTHCKKQSYRFDSEGLLIRNDYTADIVGSWAKGAHFTTHFQDIEGFPMATKRDVFVRLGSWATSIPVLSAELKPLGVYFR
>NZ_CP006723.1|WP_002072887.1|2867462_2867681_-|hypothetical-protein
MTEKDDNRLIQFQKSFRIDSLIESAIHLSGTGKITINEAPKLFVQPQESSTTLNEDTITSNQQNFQNRNKDK
>NZ_CP006723.1|WP_001047036.1|2866460_2867447_-|hypothetical-protein
MNLDSILKITLAVAFLLPGFLVFKLKSLVKEYIVEDNFSLTIYSLFFSLLIFSIWLISNVFWEVLFFKDYHFILNFKKAIIAGNLEILLHPKVCISISSYVVIFLIVYYLNFLFHWSSFGYLTITRVIGFKKKTNRLTPWEDLLHLAQGKWVAIETNANKVYVGLIHYISHHPFDRQIIITGASSDTIHIYENKTEIIHSHPPKYVYLMGSSITAISVIDTGYRRKLDILKIESWIRRFPKLRRIYFFLIPIKKSIFKKMYLILPVLSIVLAYFAIKISLYIPTMFFNQNFRFNTLIVDSAYFIMILLFSLLLVKLIENYKDTLLTIE
>NZ_CP006723.1|WP_001010039.1|2865145_2865754_-|hypothetical-protein
MNFLIKQTFLFRKSRIFHVLLLGLILTLYCSFALERETFLAETNLKAPEIWVGKIFLAGHTVDHKKDTSEILRLIQTLVEDTVAKDYSKLSDQVSPKEGLLLDLKGIWTREEIKKELSKKGNYFETYFFDRELLKKQKNSENVRTVRDLFLLSGGIEIEFYYESMTECELKFRFKENTEWEKELINPYFKKVQGKWYLHRMF
>NZ_CP006723.1|WP_001968433.1|2863709_2865146_-|TolC-family-protein
MALAFGIFLGLNPFSQIDSEVIPLEFPFPTEEERKKNGLGSETTTGPNKSPNLQEVQTQTQDATNSASFAGKIVDWDVEKLTEYAVANNPLYLAEKQNMGIERGKVITASLYRNPVIQYQQQFIGMPGGGSSGPQILGANGSQGGNTEVAPALYQDLDVYGIISLRSKVAKKSFEAVLGEFDNFDRLFRLRLRQNYWAYLFLTNLVDYNKEFYENYSDLLELTKFRVEKGDISPLEYERLELERIQVEKFYRDALVRRQFVEKELRILSGIRESEGIFAFKTEMKFKSLEDLGLKLKDSSVASVNRPDLAALEERVKEKKLNIDLQRREALGYLQVGGEWRIKGNEHYAGVFATIPLPLNDRGQGKVLSAKEEHRKFELALEAKKREVNEEIEASKKELLAREDLLAKYERINLLQKNKQLEQKSRIAYVRGASDQVTFLQAEKNYLTVLRDYYEVLYLYYNAVEIYKAAVGKKMERD
>NZ_CP006723.1|WP_000614666.1|2862510_2863692_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MIQIIKRYKFILVLLAVLSTGYLGYKKFFPKKIEEKKQSTVDKNKFTVSEEILKRHPITLVSLKEIAAIDEVALPGRISYDPESMARAGSTVEARIKKVLVREGDRVSQGSPLAILSSVMLGEVEASYVKARASLEALKLQADRAKELFDMKVTSAKDYEFANMQYKTAKTEVETTRIKLENYGLTPAEIAGIERGVYVSSNLVLRSPINGEVTERKAVQGQQVTRNEDLFTIANLTNLMVLLEVYEKDLGMISEGAEAQIYPLGDEKSPGIRGEVAYVGSVLDSIKRTAKLRIMVSNRNGKLKPGQSVTAKVKGMVANSGSEPRKTIPLEAVHEIEGKSFVFLQNEDGSFEATEVIVGDTVGDEVVIKAGIREGAEIVSRGSFILKSEYLKL
>NZ_CP006723.1|WP_000687992.1|2878245_2878779_-|rhodanese-like-domain-containing-protein
MKIFCLLLLNFCFCVTIIAKENDFVKTKRNPIPNRLIDYKKFQNIVNSSAEEREAKRLTEEEFLNMIQDKEVVLLDARSESRYKLRHIKGAVSLPFTEFTKESLAKVIPKINSKILIYCNNNFMGSPEAFASKAPAASLNLSTFISLKAYGYKNIYELGPLLSVDSTKLIFEGTEVQ
>NZ_CP006723.1|WP_002091036.1|2880384_2881248_+|SH3-domain-containing-protein
MIGNNLISAEIESCFTSYPEVVVRDSPNTSGKKVRIIKQSIPLKILERTSTLEEIKIRNRKVQSNWVKISDGWIFGGLIQCIPKIFFAHPISYHEEELPFSPSDSTNWIAIYLQQESYLRKQISIDLKREHDTVVDQNENIKTGYKVNVINNPIVLIKGITFKKGNFPAITKKVPLELEFGKSYHFNFEKDNYRITSKGKPTQSSGINGYQLILHKNNEEMIIDSRIYRTEKPILVFAGDIDGDGELDFIFDLKDHYNVSNEHLYISSEKINDFFIVPVAANWNTGC
>NZ_CP006723.1|WP_000068277.1|2881479_2881944_-|hypothetical-protein
MAQNKKSALFDILKREKLEKMLKRNSSSGQSQSNEKPQTSVSENVPEKSSTEKKEPQISKIYKAIEDVKLDIRYYFLQDEYVEKLASIYIKNEGPLEKLGIDPKKYLEYARDSFDRYKQLDKKMPLEPMNKKSWDHVEKSLNELITKLLEKFSK
>NZ_CP006723.1|WP_000788716.1|2882148_2883216_-|rhomboid-family-intramembrane-serine-protease
MKNHSPSPGECGNPGQICPGLALLDSLTTIRILSNMAKRKYRNGISLFGYSIFHPINLILVVNVLVYILQLFAGGTGIIEYYFALTPFRVFHGHYWQVFSYGFLHEAYGIPFIHLFFNMYVFVMFGGLICRYISAWKFTVVYLTAILTGGITVLLAPVLNEILGIHYPMDLFQTTTLGASGGVTGILVLFGILFPETEVFLVFFRMKARYAAWIFVGGGFVADFVAVYYFHSPFVVSNSCHLGGAIGATLVAPLILKNNFGKIFPKNKDSENTKPTRSLNEDLDFQTQKNLKLLDELSKKISYSDQEDILIPLQQTNVNLCPPPTFQPEDPFCLRCDWLPNCALRKLKTSSEKIP
>NZ_CP006723.1|WP_045192542.1|2883272_2884367_+|S-methyl-5-thioribose-1-phosphate-isomerase
MQESGLKPILWKNKELILLDQRVLPGTTSYITAKTLEDCIFAIREMVVRGAPAIAITGAFGITLYWNSLVSKPSFSELKLKLSELLESRPTAVNLRLAIEEFSSRFPESNYSSFSLEEIQKGAEELALFMLSEDLENNLTLSKYALSLFPKQPSSLNIITHCNTGALATAGHGTALGVIRSLRDAGHSLTVFADETRPYLQGARLTAWELQEEKIQSFLITDNMAGWVMSSRKIDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEMRKEEEITSFGFLKDSDGKPLLKEGVIAPKGMKALNPSFDVTPASLITGIITEKGIVSPVTKENLKKIFQLI
>NZ_CP006723.1|WP_000993258.1|2885958_2887458_-|DUF342-domain-containing-protein
MNANEEPMNTPTPESQISPVSIESAITIVVSTDQLSATITVRPYNLKGTILSKDKLWSVIQDWGIHRDRVLTDEIRKILNLLERAAQKGDFTPIKMEVAKGVAPVPGENGWVRFYHPMSKRVKLLEDGRADFRNIDRYINVKVGEKLATKFEGIPGIPGFDVFGNIIPAPSIKKPKLVVGNHIEERNVLEEGKNLQEYFASSNGVIFATEVSITVSPELQIAGNVGLSTGNIQFDGNVIVRGDVEPGSVVECTGSLVVYGNLESNQIKVGQDLIVHGGIKGSGTEIILVTGRIQTKFIENSYLETEGDIIVEGAILNSTIDTLGSIILNGQNGNLVSSKIRTNEGISVVSLGSSAELDVTVELGFHFKNDRSFQEISRKIQMGEKEMEKILPKIQQIKHMVQRFRGNLPEDKKIAFKVVFEDYNKKLKILNMLKFKQDSLKSSRFNPGAVRLAVQKGAYPGAVIHYRRQIEKITKFQSSFMMVFEPGQEKAIMVALQTK
>NZ_CP006723.1|WP_001132139.1|2887751_2888798_-|hypothetical-protein
MPMNFFSAIRGFPFLIDYSGLKIPKQAHITEISLDLSGSVSLRTKVLENPGNSKKPVIYLQHGMSFKGIDDVRILALGNNLANRGFRVYLPELTEVKNLLIRSETISNIRASFLKIHALEKCPVSYISASFSAGMGFVALADSECQKVLNSALLIGSYSDFVKTLPFVLKNYEIESYAVNVMMYNYIHLIRSEPEGLKKYFLESALDNGLSRKEDSVQGPKVFLNLNEEDKNFLKRFLESSDFRNQLALEIKSIVPETFAKETSPAFFTDHFYRPCFLLHGDDDPVISPQESKDLRNLLLKNGNQKVSFLETSLLTHGDHRPFYSGLNEILPMAKFWGEYLNSVNLLF
>NZ_CP006723.1|WP_001050108.1|2888898_2890167_-|tetratricopeptide-repeat-protein
MNLKRIFIFFLLLCQLHCATFTGTLVNKWVKDYYESTNITGVGIGLAGDGAISVYMGVQFGLAFGLAYAAATIVALPFIFFGLLQPLKVQPVLYFPIFSNDGKDLRGLLQHVPHVIPFYIRPIVIPSHPKESIERELAKSFFSSVYFNFDFLYSFQYLNSISTSKILEHTSIEEIRNDMSRFRKLFNEDFVFISEAHLKLGECKLEKISYKEIMKFEERLLSRPVYPREKEDQEETGLMEVQVEIKTYLVDFKNQKIRSFEIFETERGYNDFGQRACPDPIRAGKMALKNVGLSHTRKIFPQWKKTKLNLIRNDSDPNVQKLLEEGFQYFGRGDDENHEIFLIKPEALEVWKLALAQSGNRSEGAFANIAYYYLNNGYLEEAIDWFRKAAVANPDREKFWNLRIKDILHKREQVEVYNDLNN
>NZ_CP006723.1|WP_045192545.1|2890875_2891172_+|hypothetical-protein
MYFYLLYLHCFSSFRSETKTAKDNRGDSTSSAQSLLSSFVSDHVAENSTCGKLEIAEHRTEVDKKSHLVFQVFVIGKSSCCPQIILKSELFLNLYRGN
>NZ_CP006723.1|WP_045192547.1|2891172_2891832_+|hypothetical-protein
MNPISIGLLYFFGSIAIGILLGWIIGNYFKFEVGLMLGVFTPGLTSTFVAIQLFFIEYQARLQPGPNRFIGEADDFVFELLNASLVFMLIAVFLISFMMIFLHNSYTYYLQKRNQNYKKNLEPEPEPEKVPENFLAFLINFIFNIATFGGIPIVTCCAYFWTKDLFFSFQIGLGTTAIGILGHAIKALFQRDLSWSFYAFLLCFNFAAWIFALEFFEFM

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Crispr_ID: NZ_CP006723_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_8

2877753-2878056

Orphan

Consensus_repeat	Method
TTTTTTAAATTTCCTATTTCTTTAGGAA	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP006723_8

>merge|NZ_CP006723|8|2877753-2878056|CRISPRCasFinder
TTTCTTAAGTTCCCGATTTCTTGCGGTAATATTTTGAGTTGATTTCTGCTTAAATATAATTCTTTTAAGTTTTTTAAATTTCCTATTTCTTTAGGAAGTGTTTGAAGTTTATTCCATTCTATCGACAGTTCTTTTAGTTTTTTTAAATTCCCTATTTCTTTAGGAATTGTTTCAAGTTTGTTTCCATTTAAAGACAACACCTGTAAATTTTTTAAATTTCCTATTTCAGGAGGCAGAGTTGTAATTTCGTTCGCGCTTAAATATAATTTTTTTAAATTTTGTAAGTTTCCAATTTCCTTTGGAA

>NZ_CP006723|8|8|2877753-2878056|CRISPRCasFinder
TTTCTTAAGTTCCCGATTTCTTGCGGTA	ATATTTTGAGTTGATTTCTGCTTAAATATAATTCTTTTAAG
TTTTTTAAATTTCCTATTTCTTTAGGAA	GTGTTTGAAGTTTATTCCATTCTATCGACAGTTCTTTTAGT
TTTTTTAAATTCCCTATTTCTTTAGGAA	TTGTTTCAAGTTTGTTTCCATTTAAAGACAACACCTGTAAA
TTTTTTAAATTTCCTATTTCAGGAGGCA	GAGTTGTAATTTCGTTCGCGCTTAAATATAATTTTTTTAAA
TTTTGTAAGTTTCCAATTTCCTTTGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000068277.1\|2881479_2881944_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000465519.1\|2875345_2876482_-\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143598
NZ_CP006723.1\|WP_000371205.1\|2870257_2870968_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000687992.1\|2878245_2878779_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP006723.1\|WP_045192545.1\|2890875_2891172_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000788716.1\|2882148_2883216_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP006723.1\|WP_001050108.1\|2888898_2890167_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|380169
NZ_CP006723.1\|WP_001010039.1\|2865145_2865754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_002091036.1\|2880384_2881248_+\|SH3-domain-containing-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_002072887.1\|2867462_2867681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000051773.1\|2874772_2875294_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP006723.1\|WP_000698132.1\|2872995_2874003_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP006723.1\|WP_045192542.1\|2883272_2884367_+\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223260
NZ_CP006723.1\|WP_001132139.1\|2887751_2888798_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001047036.1\|2866460_2867447_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001968433.1\|2863709_2865146_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP006723.1\|WP_045192547.1\|2891172_2891832_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000614666.1\|2862510_2863692_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
NZ_CP006723.1\|WP_002079374.1\|2871328_2871829_-\|Ig-domain-protein	unknown	unknown	gnl\|CDD\|310150
NZ_CP006723.1\|WP_000993258.1\|2885958_2887458_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000465519.1\|2875345_2876482_-\|carbon-nitrogen-hydrolase	gnl\|CDD\|143598	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	2.03923e-19
NZ_CP006723.1\|WP_000051773.1\|2874772_2875294_-\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	1.59265e-08
NZ_CP006723.1\|WP_000698132.1\|2872995_2874003_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.31006e-14
NZ_CP006723.1\|WP_001050108.1\|2888898_2890167_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|380169	NF033161, lipo_LipL41, lipoprotein LipL41. Members of this family are lipoprotein LipL41, as described in Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 but found broadly in the genus Leptospira. Close homologs that are not lipoproteins by sequence are likely defective in their reported coding region.	1.38802e-10
NZ_CP006723.1\|WP_045192542.1\|2883272_2884367_+\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|223260	COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis].	1.43684e-148
NZ_CP006723.1\|WP_000687992.1\|2878245_2878779_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.00905e-15
NZ_CP006723.1\|WP_001968433.1\|2863709_2865146_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	3.14215e-15
NZ_CP006723.1\|WP_000788716.1\|2882148_2883216_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	5.6757e-17
NZ_CP006723.1\|WP_000614666.1\|2862510_2863692_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	5.9882e-43
NZ_CP006723.1\|WP_002079374.1\|2871328_2871829_-\|Ig-domain-protein	gnl\|CDD\|310150	pfam05345, He_PIG, Putative Ig domain. This alignment represents the conserved core region of ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to (pfam02494) and (pfam00801) suggest an Ig-like fold (personal obs:C. Yeats). So this family may be similar in function to the (pfam02639) and (pfam02638) domains. This domain is also found in the WisP family of proteins of Tropheryma whipplei.	0.00252575
NZ_CP006723.1\|WP_000993258.1\|2885958_2887458_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	2.93677e-106

>NZ_CP006723.1|WP_000465519.1|2875345_2876482_-|carbon-nitrogen-hydrolase
MFFKRSYLFYFLFLILIFYGIWSYTDRSSWEQTPDSRLKRIESFGKDLKKGNLLGIQPWMYPIDYSNEINFSKKIQSYLEEASKKGYINPKTIVVFPEYLGTWLVVAGEKTSVVRSDKLEDSMRILILSNPVSFIFNFFKAQGKDKIRDALFRMKAEKMLSIYSNTFSGMAKKWGVTIVAGSILLPEPYILEGKIQIRNGALKNVSYVFLPDGRVAENSPEKIYPIEDEKSFVAAATLKNLKIIQSPMGKIGVLVCADSWYPEVYEIFKKQNVNFVVVPSYVAPDGAMSEVWKGYNGSKNPTDIRLEDVHRISEGEAWLKYALAGRILKSGATHGMNVFLRGSLWDLGSDGEIILVHRSMVRTFPKIYGASIVNLWLD
>NZ_CP006723.1|WP_000051773.1|2874772_2875294_-|hypothetical-protein
MSLFLFETFSDNFQSKHNEVTSGKWFGLTSLNLEGKPFAAFFEGSLVLKLGAEKIAEIISRYPGAKLFDPSGNNKAMKDWLQIPAEFEQDWLNLAEDALVFAEKSLSAVAVPAKKKAAPKKAAKKKAPAKKKSPAKKKAAKKKSSAKKAKMKPKAKAKKKVARKKTAAKKRKR
>NZ_CP006723.1|WP_000698132.1|2872995_2874003_+|alpha/beta-hydrolase
MKILKWILGIIGTFALFLVVTFYAETPKYEYKSVPLYSNFDSYYREKLQISRSKKVRPGNEEKLVRYSADKTDFSILYIHGFGASRAEGEEVTDQLAKDFKANLYYVRLPGHGTNLENHRDTTFEEILQDSETAFLECEKLGKKTILIGTSMGGLISTYLAAKYPEKVHALVLVSPFYDFTNPFSVIYQFSWGKDFANIVMGKIRKSTEEEKRNPASAFWYRDQYLAAVQNLSDLREFILGTDPFSKISSPILLFYYYKNEKNQDVSASVSSMLNALKKVNENGKASPLNKAVKVEFGNHVLFSKYMKSDKDLILKETETFIQNVFSLNKNLSHN
>NZ_CP006723.1|WP_002079374.1|2871328_2871829_-|Ig-domain-protein
MDLLLLQEVSTPPCPGGVTMMDIPSTINAQVGTSVKSPFLIQFSAGSVNHETLMKNKNCNFSELSVTNLPAGLTLNSTTGAINGAPTAISAATTVTFSAKLKANNSTPITFTKTTTVTVFAAGSLTCNTAGAALGCNNAALPYSCPNSNFCYSTYSSCKAASECGY
>NZ_CP006723.1|WP_000371205.1|2870257_2870968_-|hypothetical-protein
MDPFEKIVNRYGGWELWNRLDFVEFYFQSLSGPLPFLKGLGKTFNKHGKVRVFPKEFITEFLDYPNPGKKIIFKNGKVGIVNISENLSEFGLSNYKDSFSGLKKYRLWNPLDVSYFFGYATTQYVSIPFILKEYSVRKFELENGDFQIEAEFPSYLHTHCKKQSYRFDSEGLLIRNDYTADIVGSWAKGAHFTTHFQDIEGFPMATKRDVFVRLGSWATSIPVLSAELKPLGVYFR
>NZ_CP006723.1|WP_002072887.1|2867462_2867681_-|hypothetical-protein
MTEKDDNRLIQFQKSFRIDSLIESAIHLSGTGKITINEAPKLFVQPQESSTTLNEDTITSNQQNFQNRNKDK
>NZ_CP006723.1|WP_001047036.1|2866460_2867447_-|hypothetical-protein
MNLDSILKITLAVAFLLPGFLVFKLKSLVKEYIVEDNFSLTIYSLFFSLLIFSIWLISNVFWEVLFFKDYHFILNFKKAIIAGNLEILLHPKVCISISSYVVIFLIVYYLNFLFHWSSFGYLTITRVIGFKKKTNRLTPWEDLLHLAQGKWVAIETNANKVYVGLIHYISHHPFDRQIIITGASSDTIHIYENKTEIIHSHPPKYVYLMGSSITAISVIDTGYRRKLDILKIESWIRRFPKLRRIYFFLIPIKKSIFKKMYLILPVLSIVLAYFAIKISLYIPTMFFNQNFRFNTLIVDSAYFIMILLFSLLLVKLIENYKDTLLTIE
>NZ_CP006723.1|WP_001010039.1|2865145_2865754_-|hypothetical-protein
MNFLIKQTFLFRKSRIFHVLLLGLILTLYCSFALERETFLAETNLKAPEIWVGKIFLAGHTVDHKKDTSEILRLIQTLVEDTVAKDYSKLSDQVSPKEGLLLDLKGIWTREEIKKELSKKGNYFETYFFDRELLKKQKNSENVRTVRDLFLLSGGIEIEFYYESMTECELKFRFKENTEWEKELINPYFKKVQGKWYLHRMF
>NZ_CP006723.1|WP_001968433.1|2863709_2865146_-|TolC-family-protein
MALAFGIFLGLNPFSQIDSEVIPLEFPFPTEEERKKNGLGSETTTGPNKSPNLQEVQTQTQDATNSASFAGKIVDWDVEKLTEYAVANNPLYLAEKQNMGIERGKVITASLYRNPVIQYQQQFIGMPGGGSSGPQILGANGSQGGNTEVAPALYQDLDVYGIISLRSKVAKKSFEAVLGEFDNFDRLFRLRLRQNYWAYLFLTNLVDYNKEFYENYSDLLELTKFRVEKGDISPLEYERLELERIQVEKFYRDALVRRQFVEKELRILSGIRESEGIFAFKTEMKFKSLEDLGLKLKDSSVASVNRPDLAALEERVKEKKLNIDLQRREALGYLQVGGEWRIKGNEHYAGVFATIPLPLNDRGQGKVLSAKEEHRKFELALEAKKREVNEEIEASKKELLAREDLLAKYERINLLQKNKQLEQKSRIAYVRGASDQVTFLQAEKNYLTVLRDYYEVLYLYYNAVEIYKAAVGKKMERD
>NZ_CP006723.1|WP_000614666.1|2862510_2863692_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MIQIIKRYKFILVLLAVLSTGYLGYKKFFPKKIEEKKQSTVDKNKFTVSEEILKRHPITLVSLKEIAAIDEVALPGRISYDPESMARAGSTVEARIKKVLVREGDRVSQGSPLAILSSVMLGEVEASYVKARASLEALKLQADRAKELFDMKVTSAKDYEFANMQYKTAKTEVETTRIKLENYGLTPAEIAGIERGVYVSSNLVLRSPINGEVTERKAVQGQQVTRNEDLFTIANLTNLMVLLEVYEKDLGMISEGAEAQIYPLGDEKSPGIRGEVAYVGSVLDSIKRTAKLRIMVSNRNGKLKPGQSVTAKVKGMVANSGSEPRKTIPLEAVHEIEGKSFVFLQNEDGSFEATEVIVGDTVGDEVVIKAGIREGAEIVSRGSFILKSEYLKL
>NZ_CP006723.1|WP_000687992.1|2878245_2878779_-|rhodanese-like-domain-containing-protein
MKIFCLLLLNFCFCVTIIAKENDFVKTKRNPIPNRLIDYKKFQNIVNSSAEEREAKRLTEEEFLNMIQDKEVVLLDARSESRYKLRHIKGAVSLPFTEFTKESLAKVIPKINSKILIYCNNNFMGSPEAFASKAPAASLNLSTFISLKAYGYKNIYELGPLLSVDSTKLIFEGTEVQ
>NZ_CP006723.1|WP_002091036.1|2880384_2881248_+|SH3-domain-containing-protein
MIGNNLISAEIESCFTSYPEVVVRDSPNTSGKKVRIIKQSIPLKILERTSTLEEIKIRNRKVQSNWVKISDGWIFGGLIQCIPKIFFAHPISYHEEELPFSPSDSTNWIAIYLQQESYLRKQISIDLKREHDTVVDQNENIKTGYKVNVINNPIVLIKGITFKKGNFPAITKKVPLELEFGKSYHFNFEKDNYRITSKGKPTQSSGINGYQLILHKNNEEMIIDSRIYRTEKPILVFAGDIDGDGELDFIFDLKDHYNVSNEHLYISSEKINDFFIVPVAANWNTGC
>NZ_CP006723.1|WP_000068277.1|2881479_2881944_-|hypothetical-protein
MAQNKKSALFDILKREKLEKMLKRNSSSGQSQSNEKPQTSVSENVPEKSSTEKKEPQISKIYKAIEDVKLDIRYYFLQDEYVEKLASIYIKNEGPLEKLGIDPKKYLEYARDSFDRYKQLDKKMPLEPMNKKSWDHVEKSLNELITKLLEKFSK
>NZ_CP006723.1|WP_000788716.1|2882148_2883216_-|rhomboid-family-intramembrane-serine-protease
MKNHSPSPGECGNPGQICPGLALLDSLTTIRILSNMAKRKYRNGISLFGYSIFHPINLILVVNVLVYILQLFAGGTGIIEYYFALTPFRVFHGHYWQVFSYGFLHEAYGIPFIHLFFNMYVFVMFGGLICRYISAWKFTVVYLTAILTGGITVLLAPVLNEILGIHYPMDLFQTTTLGASGGVTGILVLFGILFPETEVFLVFFRMKARYAAWIFVGGGFVADFVAVYYFHSPFVVSNSCHLGGAIGATLVAPLILKNNFGKIFPKNKDSENTKPTRSLNEDLDFQTQKNLKLLDELSKKISYSDQEDILIPLQQTNVNLCPPPTFQPEDPFCLRCDWLPNCALRKLKTSSEKIP
>NZ_CP006723.1|WP_045192542.1|2883272_2884367_+|S-methyl-5-thioribose-1-phosphate-isomerase
MQESGLKPILWKNKELILLDQRVLPGTTSYITAKTLEDCIFAIREMVVRGAPAIAITGAFGITLYWNSLVSKPSFSELKLKLSELLESRPTAVNLRLAIEEFSSRFPESNYSSFSLEEIQKGAEELALFMLSEDLENNLTLSKYALSLFPKQPSSLNIITHCNTGALATAGHGTALGVIRSLRDAGHSLTVFADETRPYLQGARLTAWELQEEKIQSFLITDNMAGWVMSSRKIDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEMRKEEEITSFGFLKDSDGKPLLKEGVIAPKGMKALNPSFDVTPASLITGIITEKGIVSPVTKENLKKIFQLI
>NZ_CP006723.1|WP_000993258.1|2885958_2887458_-|DUF342-domain-containing-protein
MNANEEPMNTPTPESQISPVSIESAITIVVSTDQLSATITVRPYNLKGTILSKDKLWSVIQDWGIHRDRVLTDEIRKILNLLERAAQKGDFTPIKMEVAKGVAPVPGENGWVRFYHPMSKRVKLLEDGRADFRNIDRYINVKVGEKLATKFEGIPGIPGFDVFGNIIPAPSIKKPKLVVGNHIEERNVLEEGKNLQEYFASSNGVIFATEVSITVSPELQIAGNVGLSTGNIQFDGNVIVRGDVEPGSVVECTGSLVVYGNLESNQIKVGQDLIVHGGIKGSGTEIILVTGRIQTKFIENSYLETEGDIIVEGAILNSTIDTLGSIILNGQNGNLVSSKIRTNEGISVVSLGSSAELDVTVELGFHFKNDRSFQEISRKIQMGEKEMEKILPKIQQIKHMVQRFRGNLPEDKKIAFKVVFEDYNKKLKILNMLKFKQDSLKSSRFNPGAVRLAVQKGAYPGAVIHYRRQIEKITKFQSSFMMVFEPGQEKAIMVALQTK
>NZ_CP006723.1|WP_001132139.1|2887751_2888798_-|hypothetical-protein
MPMNFFSAIRGFPFLIDYSGLKIPKQAHITEISLDLSGSVSLRTKVLENPGNSKKPVIYLQHGMSFKGIDDVRILALGNNLANRGFRVYLPELTEVKNLLIRSETISNIRASFLKIHALEKCPVSYISASFSAGMGFVALADSECQKVLNSALLIGSYSDFVKTLPFVLKNYEIESYAVNVMMYNYIHLIRSEPEGLKKYFLESALDNGLSRKEDSVQGPKVFLNLNEEDKNFLKRFLESSDFRNQLALEIKSIVPETFAKETSPAFFTDHFYRPCFLLHGDDDPVISPQESKDLRNLLLKNGNQKVSFLETSLLTHGDHRPFYSGLNEILPMAKFWGEYLNSVNLLF
>NZ_CP006723.1|WP_001050108.1|2888898_2890167_-|tetratricopeptide-repeat-protein
MNLKRIFIFFLLLCQLHCATFTGTLVNKWVKDYYESTNITGVGIGLAGDGAISVYMGVQFGLAFGLAYAAATIVALPFIFFGLLQPLKVQPVLYFPIFSNDGKDLRGLLQHVPHVIPFYIRPIVIPSHPKESIERELAKSFFSSVYFNFDFLYSFQYLNSISTSKILEHTSIEEIRNDMSRFRKLFNEDFVFISEAHLKLGECKLEKISYKEIMKFEERLLSRPVYPREKEDQEETGLMEVQVEIKTYLVDFKNQKIRSFEIFETERGYNDFGQRACPDPIRAGKMALKNVGLSHTRKIFPQWKKTKLNLIRNDSDPNVQKLLEEGFQYFGRGDDENHEIFLIKPEALEVWKLALAQSGNRSEGAFANIAYYYLNNGYLEEAIDWFRKAAVANPDREKFWNLRIKDILHKREQVEVYNDLNN
>NZ_CP006723.1|WP_045192545.1|2890875_2891172_+|hypothetical-protein
MYFYLLYLHCFSSFRSETKTAKDNRGDSTSSAQSLLSSFVSDHVAENSTCGKLEIAEHRTEVDKKSHLVFQVFVIGKSSCCPQIILKSELFLNLYRGN
>NZ_CP006723.1|WP_045192547.1|2891172_2891832_+|hypothetical-protein
MNPISIGLLYFFGSIAIGILLGWIIGNYFKFEVGLMLGVFTPGLTSTFVAIQLFFIEYQARLQPGPNRFIGEADDFVFELLNASLVFMLIAVFLISFMMIFLHNSYTYYLQKRNQNYKKNLEPEPEPEKVPENFLAFLINFIFNIATFGGIPIVTCCAYFWTKDLFFSFQIGLGTTAIGILGHAIKALFQRDLSWSFYAFLLCFNFAAWIFALEFFEFM

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Crispr_ID: NZ_CP006723_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_9

3202940-3204122

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	PILER-CR
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CRISPRCasFinder
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CRT

16 spacers

cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

The CRISPR arrays of NZ_CP006723_9

>merge|NZ_CP006723|9|3202940-3204122|PILER-CR,CRISPRCasFinder,CRT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACGCTACAAGGGATGTTCTTGCAATTGATACTGTTGCTTCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACGATCAAGGGCGAAAACTTCCGGCGGAAATTACGACGGCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACGTTAGATTTAAGTCTCTTGGTTGAACTTCAATCGGTGCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACCGAAAAGAATTTTTAACAAAAACTCTATTTAAAGCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACAATTGAATAAACCCATAGGGTTTTCCGTGCCGGAACTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACAGCGTGCAACAAAACACGGAATACAATTCTCTTTGCCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACCTTCTCGCTCCGTCAGGATTACAGATATAAAGATTCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACGATTCCTTGACCCTGCGTTTACTTGTGGTCCTACCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACACGTAAAGGTAGAGCTTCCGTATAGATCTGATTTACTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACAATTCTCTCAATGCTCTCGTTGTAAGACGTATCATTCTCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACATTAGTTCGGATTCATTGAGTTCAAAGTCTCTTCCCCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACCAAAGAAAAGCGCTCCAGAAGCAAACAACAGCTCCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACAATTATATCCGACTTCTTTTTACCGGTCTTAGGGGCCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACGAATACAACCTCTTCAAAAAAGAGGAACCGGCGTCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACAGTTGATAGAGCGGTACTTCTAAAACTTTTTCCATCCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACCAAGAGAAGCAGGACAAAGACGGAAACAAGTTTTTCCTGAATATAACTTTGATGCCGTTAGGCGGTTTAGAAT

>NZ_CP006723|9|1|3202940-3204049|PILER-CR
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GCTACAAGGGATGTTCTTGCAATTGATACTGTTGCTT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GATCAAGGGCGAAAACTTCCGGCGGAAATTACGACGG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GTTAGATTTAAGTCTCTTGGTTGAACTTCAATCGGTG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CGAAAAGAATTTTTAACAAAAACTCTATTTAAAG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AATTGAATAAACCCATAGGGTTTTCCGTGCCGGAA
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AGCGTGCAACAAAACACGGAATACAATTCTCTTTGC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CTTCTCGCTCCGTCAGGATTACAGATATAAAGATT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GATTCCTTGACCCTGCGTTTACTTGTGGTCCTAC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	ACGTAAAGGTAGAGCTTCCGTATAGATCTGATTTA
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AATTCTCTCAATGCTCTCGTTGTAAGACGTATCATTCT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	ATTAGTTCGGATTCATTGAGTTCAAAGTCTCTTCCC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CAAAGAAAAGCGCTCCAGAAGCAAACAACAGCTC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AATTATATCCGACTTCTTTTTACCGGTCTTAGGGGC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GAATACAACCTCTTCAAAAAAGAGGAACCGGCGT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AGTTGATAGAGCGGTACTTCTAAAACTTTTTCCATC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC

>NZ_CP006723|9|9|3202940-3204122|CRISPRCasFinder
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GCTACAAGGGATGTTCTTGCAATTGATACTGTTGCTT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GATCAAGGGCGAAAACTTCCGGCGGAAATTACGACGG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GTTAGATTTAAGTCTCTTGGTTGAACTTCAATCGGTG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CGAAAAGAATTTTTAACAAAAACTCTATTTAAAG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AATTGAATAAACCCATAGGGTTTTCCGTGCCGGAA
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AGCGTGCAACAAAACACGGAATACAATTCTCTTTGC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CTTCTCGCTCCGTCAGGATTACAGATATAAAGATT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GATTCCTTGACCCTGCGTTTACTTGTGGTCCTAC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	ACGTAAAGGTAGAGCTTCCGTATAGATCTGATTTA
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AATTCTCTCAATGCTCTCGTTGTAAGACGTATCATTCT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	ATTAGTTCGGATTCATTGAGTTCAAAGTCTCTTCCC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CAAAGAAAAGCGCTCCAGAAGCAAACAACAGCTC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AATTATATCCGACTTCTTTTTACCGGTCTTAGGGGC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GAATACAACCTCTTCAAAAAAGAGGAACCGGCGT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AGTTGATAGAGCGGTACTTCTAAAACTTTTTCCATC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CAAGAGAAGCAGGACAAAGACGGAAACAAGTTTTTC
CTGAATATAACTTTGATGCCGTTAGGCGGTTTAGAAT

>NZ_CP006723|9|1|3202940-3204121|CRT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GCTACAAGGGATGTTCTTGCAATTGATACTGTTGCTT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GATCAAGGGCGAAAACTTCCGGCGGAAATTACGACGG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GTTAGATTTAAGTCTCTTGGTTGAACTTCAATCGGTG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CGAAAAGAATTTTTAACAAAAACTCTATTTAAAG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AATTGAATAAACCCATAGGGTTTTCCGTGCCGGAA
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AGCGTGCAACAAAACACGGAATACAATTCTCTTTGC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CTTCTCGCTCCGTCAGGATTACAGATATAAAGATT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GATTCCTTGACCCTGCGTTTACTTGTGGTCCTAC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	ACGTAAAGGTAGAGCTTCCGTATAGATCTGATTTA
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AATTCTCTCAATGCTCTCGTTGTAAGACGTATCATTCT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	ATTAGTTCGGATTCATTGAGTTCAAAGTCTCTTCCC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CAAAGAAAAGCGCTCCAGAAGCAAACAACAGCTC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AATTATATCCGACTTCTTTTTACCGGTCTTAGGGGC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	GAATACAACCTCTTCAAAAAAGAGGAACCGGCGT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AGTTGATAGAGCGGTACTTCTAAAACTTTTTCCATC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CAAGAGAAGCAGGACAAAGACGGAAACAAGTTTTTC
CTGAATATAACTTTGATGCCGTTAGGCGGTTTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP006723.1\|WP_001110344.1\|3196639_3197191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227269
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|131635
NZ_CP006723.1\|WP_025180030.1\|3198103_3198316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000533550.1\|3215610_3215793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|372509
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NZ_CP006723.1\|WP_000110275.1\|3202693_3202897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001072142.1\|3197533_3197920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379539
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	8.42665e-19
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	gnl\|CDD\|227269	COG4933, COG4933, Uncharacterized conserved protein [Function unknown].	3.39436e-15
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.93443e-108
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|131635	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.	1.44797e-102
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	5.92572e-10
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	6.53749e-45
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	gnl\|CDD\|372509	pfam13166, AAA_13, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.	1.04046e-06
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.59841e-135
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.43706e-156
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.32745e-84
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	6.55101e-165
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	0.00101694
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0

>NZ_CP006723.1|WP_000110275.1|3202693_3202897_-|hypothetical-protein
MSVFKGGEQVYRFLSLFFMFGFFRSAYFVSKDHFVSNIKIQVCLSSSPIINLAGIFTRKKNERWAIN
>NZ_CP006723.1|WP_000683530.1|3202288_3202573_+|CRISPR-associated-endonuclease-Cas2
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEKKSAWPEAPKTLKIL
>NZ_CP006723.1|WP_002063811.1|3200663_3202289_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MGIHSLLYCERLFYLEEVEGILVADDRVYAGRTLHEELEPNEDSSGRIESFHYTSEKLEVSGKVDRIQKRDGDWIPYEHKRGRARIGTNGPEAWESDQCQVTVYALLLEEATGRNISEGKIRYHGSKDLVKIEIDEELRSKALKTIDRAKELSTSTNRPPVAQNENLCKNCSLAPVCLPEETRVITENEYEPIRLFPEKREKTTLHVFGHDSRIKKSDNVLLVEKVTETGEKSKSEKIPIQEIESVNIHGNCQISSQMIKFLVSEEIPVHWFSGGGNYIGGININPSGVQRRIRQFKALTKETIRLNLAKKLVSAKCESQLRYLLRATRGKDETRNETESYLATIRSGLKNIESADSPSQLLGIEGSSARAYFSGLPALLKNSDPFLVPNGRSKRPPKDPFNATLSFLYSLLYKSVRQAIIAVGLDPSFGFYHTPRSSAEPLVLDLMELFRVSLCDMTLIGSINRKSWIDEDFEITKNKVWLSESGRKKATQLYETRLDDTWKHPVVNYSLSYYRMIELEVRLLEKEWSGEANIFAQARLR
>NZ_CP006723.1|WP_082267386.1|3199975_3200185_+|hypothetical-protein
MGPLQSNLHLNTTSKLRIRAEQPLLSHRLKLAGKNLEVSQDKIQLGIPIIGLLKPHKTLYSRLIGSANI
>NZ_CP006723.1|WP_000578383.1|3198577_3199453_+|hypothetical-protein
MIFVLEYCLENPKSIFLVIPKDFETVREKFPFLKRKVIATYFGFHPSSLNVLEKITDSAVQNGYLKTFQNLYSIPVFQKAFHHLPIINEFIIQFFNYSRAKNWNEKWDILFLKDLLFRFPNPNFEEEDFERTFQLYEEVKRFSPSWKIRSLEHLKDLEQKMIQKIQKNEFIGPDQPYPTPPMEKEDWLEPINSRKELFLESRIQHNCIFSYDTRILEGKYYIYRIFFPERCTLSLFYINGDWYLDQIAAAFNKEAKAETLRKVEKWRMQNGIFVLGDAFRLGIPPDWIFAR
>NZ_CP006723.1|WP_025180030.1|3198103_3198316_-|hypothetical-protein
MEVAFSKAGQPVRFRMLKYSLMFSLLYLLRDSEYLWSVLISAFFISLTVHLWFGYRTKFWTTALGNINKL
>NZ_CP006723.1|WP_001072142.1|3197533_3197920_+|hypothetical-protein
MNQKIFKSIWAIIAGFLTIFILSTAVDLILHQTGIYPPMGVIMSDELFTLATAYRVLFGILSGYVTAKIAPDQPVKHSLALGVLGLIVSITGAIVMWDAGPAWYSLAIIAIALPCSWAGGILYERSQT
>NZ_CP006723.1|WP_001110344.1|3196639_3197191_+|hypothetical-protein
MNYYILEEVNYHLNIPYIGDLPEELDTIDVMTGRKIEISNLPIRVPIKIDYESEIVYPDIMTADLPLFSEKIRNSLDQIEIKNIQYYPVELFEDQTGQTKANYYMSILPVSVECLKSGINRSPAGRLILKNPIIDPTKILGLKLFRLGEEPSLIIIDSMVKDTLTNAHLNGVSFIPLEEYTSS
>NZ_CP006723.1|WP_045192693.1|3194039_3195536_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIKISGLNKAFTTKVLFDDLNLSINRGEKVGLVGRNGHGKSTLFQVILGNVEADSGTISIPKGYKIGHLQQHLHFTKPTVLEECSLGLPEGEEYETWKVEKILSGLGFSEQDMEKNPNEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEEFLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEIFIAKFKAKASFASRAQSRVKKLEKQGEMKELEKIQDLELYFNSAPFNANQMLSAENLSFSYDGKEPFLIENFSISVGSRERICIIGKNGKGKSTLLKILAGELETSQGTIKKHPVLKEGYFGQTNKLNLNENSTVVEEIMISDPSCNEWKARTIAGGLMFSEDQALKKIKVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFDGSVIMVTHDELHLRAVATKLIVFDNDSIQIFNGSYDDFLNDVGWSNEYY
>NZ_CP006723.1|WP_001060167.1|3192837_3193674_+|aldo/keto-reductase
MNNKENPLKQTIMLNNGISMPILGLGVWKTKSGKECKEAVLNALEAGYRHIDTARIYDNEVDVGQAIRESGIPRKEIFITTKLWNADQGSDKTRKALENSLDRLGIDFVDLYLIHFPVTSKRMDSWKELEKLYHDKLCKAIGVSNYTIIHLTELLKNSQITPAVNQVEFHPFLNQIYLLEYCKKHKIQLEAYSPLAHGQKIEDPTIAKIAQKYDKTPAQILIRWAIEQKIVVIPKSIKKERIIENSKVFDFAISEEDMKILNSLDEDFRTCWDPSEVV
>NZ_CP006723.1|WP_045193372.1|3208367_3210626_+|CRISPR-associated-helicase/endonuclease-Cas3
MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANEDFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQGVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGADALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPTMGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRILHSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQVLIIPFQGKPYEKENEDDGESELERCKEILKPLLDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAKPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQKQFSYGEPPLRIPVVPDSQIQYSSVRGGEWNLN
>NZ_CP006723.1|WP_000098772.1|3210627_3212511_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MSSRPSASIETTPNTPVVFQRGLSECTSPLLRAGLAGLYSTLYSLKDEKKPKTLSWELTQDSIQITSKGEFSKDFQWIINHGYQTKEGIFYCPGIHRSKTIHKDRMHFHNAMMGTFLQHGRIQVRTKGGGTAVSIEDECKLLYFPLLVEEKKIKYRKDAESILFAEKRGSTWSFENLVELSGYVMPGAPPRFTHETSWIGTIADAFLLFFAPLSCSFAEIEPSRGTWCILIPELEDLETFERFRRDYEVNTINMFAGGPGDAALRYLTEMDLTGNKKDFSPNGCEVYVIGKVAWNKKQQVRRLMMRIHPTEKNFRIYKKMRGIFQNKIHLKKTDASSKSKESRTRSTDKNKTQKKKDENYHWVSSPYAAARIAENLVQGKRWYYQFAKPLSWYIDTLERKRKSSPGSSHEKIWFESIRRFERAELIKFMENNEIWNSEEEQWFVKSFHETLSRLYAKEASHLNRRGGSRTLGDRWKHMNEKIYRDLAQAKTSPQIRTVISDLWAKSGRPPSLQEHTGALWKFISKDSEYARDLSLVALASYQGSSSLFRETVKDAVQKDEGRQLSLNLEKATTQEQVLKAYQTLWDFVETNDEEKNDLEVFVTKNWKRALEIGQEEIQKAKKKSNDA
>NZ_CP006723.1|WP_000052104.1|3212575_3213415_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSLHIFGTILTPHGVAANNRGENEGNLSTLQKLLWNGEVHSTVSGEAIRYALRETWMEDHENLLNRKIKSEGYDWQDETFKKPDRYLDDTILGFMDPKKETNKRRASLEITRAVSTRPWIGDVSFNVASVGAQRTNKNPIPYATEIHATRYQYSFALSGDDVKSEWKGLALDGLASLRRVAGNHSRFLYDFSPESIVLRVTHDPAPRILYCFREEGDTIDLKNLAKRVASGDVKAEELILGGEIASEQDAIELKTKGATVFPGIKAAVEDAKKRIGKSA
>NZ_CP006723.1|WP_000371342.1|3213435_3214059_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MDPLILYYEIPIASFRPYQSREYQDSYPVPPPSTLIGMSLSLCGLSMDHRKFFSSCEMCSAVADSNPARSTVLRRMRRLGDSGRDPKQRRPEYQELVTGIRGIVAYRGLPAELAKPMKTVLTTPEKIIRYGGLSLGESSFLVDVIRLFGLPDTTQSNWSWLIPDMKGSLDLPVWIDTISPSLTTKFRFSFQSAEGIPENAWFKLRPS
>NZ_CP006723.1|WP_001140541.1|3215189_3215618_+|hypothetical-protein
MAKTKNRRVVFLPIKPEFAHKIINGEKNIEFRKKFSSQEVETIVIYSSSPEKRVIGYATVDSIVIDTPDSLWKRFYKKGGIDKDRFSFYFNGKETGIGIRIKNVSRLKEAVTPTQLGIQGAIPQNFKFLEKGIITILERNLI
>NZ_CP006723.1|WP_000533550.1|3215610_3215793_-|hypothetical-protein
MGRRGKIATEHNASEILRDLSLPNFTFSAMILKKALKFLLSFVSRSLVSKANSNLVFFLK
>NZ_CP006723.1|WP_045192701.1|3215967_3217509_+|type-I-restriction-modification-system-subunit-M
MTSAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQYSKLNDKKITKEIKDDAIKTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSANGFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAIHKQTRINKIYDPACGSGSLLLQAKKQFDDHIIEEGFFGQEINHTTYNLARMNMFLHNINYDKFDIELGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALSYLSSKGRAAIVCFPGIFYRSGAEQKIRQYLVGNNFVETVISLAPNLFFGTTIAVNILVLSKHKTDTNTQFIDASGLFKKETNNNILTEDHIERIMQTFDSKVDTEHFAKSVSVETIANNDYNLSVSSYVEAKDNREVIDIQKLNAELKTTVEKIDQLRADIDAIVVEIEG
>NZ_CP006723.1|WP_061237873.1|3217505_3218729_+|restriction-endonuclease-subunit-S
MSKSFMEKLLKGTSVEWKTLGEVGDFIRGSGIQKSNFTESGTGCIHYGQIHTHYGTWADETKSFINPEFAARLRKAHTGNLVIATTSEDDDALAKAVAWLGDEEVAVSTDAYIYRHTINPKYMSYFFQTELFRSQKKPYITGTKVRRISGESLAKIQIPIPPLPAQEEIVRILDAFTELTTELTTELSARKKQYNYYRDQLLSFEEGEVEWKTLGDVAKKISSGGTPQTGVWEFYDGDIPWLRTQEINFEEIWDTGIKITEAGLKNSSAKWIPANCVIVAMYGATVGKIGINKIPMTTNQACANIELDENIANYQYVFHFLSSQYKYIKSLGSGPQTNINAQIVKKIQIPIPPLAEQERIVAILDKFDALTNSISEGLPREIELRQKQYEYYRELLLSFPKAEVGPT
>NZ_CP006723.1|WP_000061330.1|3218725_3219877_+|AAA-family-ATPase
MSMDIVKLLKDADQKVQLLYAFNGTGKTRLSREFKQLVAPKNNRDEADQAESSHNKILYYNASTEDLFFWDNDLEKDAEPKLKIQSNSFTDWILKDQGQDRNIITNFQHYTNEKLTPRFNEAYTVKDKNEQEVIVKEFSEVTFSLTRGNEEHSGNLKISKGEESNFIWSIFYSLLEQVISVLNVIDSSEQETDQFDQLEYVFIDDPVSSLDENHLIELAAELIQSSKSDIRFLITTHNPLFYNVLHNEFKKDTFKKYILKKQEDESYELANQSTDSPFSYHLHLKAELEKAIETGQLHKYHFNFLRNILEKTSTFVGLERWGDLLPKTEDGDPNPYEVRIINFSSHSKHSDNEVVEVPDEHRRVLSFLVKKLDEMYRLRMRTK
>NZ_CP006723.1|WP_000141542.1|3219894_3222993_+|type-I-restriction-endonuclease-subunit-R
MTEYKTIAESNHFIVLDKYTREWQVSESYQSEADLEKELVQDLKNQGYEFRTDISTPEKMLANVRERLQALNAMQFSEGEWLRFVETWLDKPSDTVIDKTRKIHDDYIHDFVFDDGHIQNIYLLDKKNIARNKVEVIRQFEQAGTHSNRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYSKESFNSEHSLFKYLQLFVISNGTDSRYFANTTHRNKNSFDFTMNWAKADNSLMKDLKDFTATFFQKNTLLNVLLTYSVFDVSDTLLVMRPYQIAATERILWKIKSSFGTKNWSKPESGGYIWHTTGSGKTLTSFKAARLSTELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSDSTAGLKRNLEMDDNKIIVTTIQKLNNLIKSESDLSIYNKQVVFIFDEAHRSQFGEAQKNLRKKFKKFYQFGFTGTPIFPQNALGADTTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPKFKEIETEQDEKKLTAAENKQALLHEERIREISQYILNQFKQKTHRLQPSSKGFNAMFAVSSVDAAKLYYESFKEVQKDQDKPLKVATIFSFSANEEQDAVGEIQDESFEVSAMESTAKEFLSAAINDYNIMFQTNFGVDSNSFQNYYRDLAKKVKDREIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLLQAYSRTNRIYDATKTFGNIITFRDLEKATIEAITLYGDKNTKNVVLEKSYKEYMEGFTDLATGEARRGYVDVVAELQQRFPKPEEIEKESDKKAFVKLFGEYLRVENVLQNYDEFTSLKALQSVDMNNQEAVEEFKAKHYVSDEGLAALQKIQVPAERKIQDYRSTYNDIRDWLRRQKSGDEKVKPRIDWDDVVFEVDLLKSQEINLDYILELIFEHNKKVKNKSILIEDIRRVIRASIGNRAKESLMIDFINQTDLDQISDKASVIDAFFSFAQTEQKREADELIQTENLNAEAAKRYITSSLRREFASENGTELNTILPKMSPLHPQYLTIKQSVFQKVSAFVEKFKGVGGQI

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Crispr_ID: NZ_CP006723_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_10

3204280-3204387

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CRISPRCasFinder

1 spacers

cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

The CRISPR arrays of NZ_CP006723_10

>merge|NZ_CP006723|10|3204280-3204387|CRISPRCasFinder
CTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACCAACGTTTCGCGGGACCTTGATTCCTTCGGAGCGACTGAATATAACTTTGATGCCGGTAGGCGATTTAGACG

>NZ_CP006723|10|10|3204280-3204387|CRISPRCasFinder
CTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCAC	CAACGTTTCGCGGGACCTTGATTCCTTCGGAGCGA
CTGAATATAACTTTGATGCCGGTAGGCGATTTAGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP006723.1\|WP_001110344.1\|3196639_3197191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227269
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|131635
NZ_CP006723.1\|WP_025180030.1\|3198103_3198316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000533550.1\|3215610_3215793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|372509
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NZ_CP006723.1\|WP_000110275.1\|3202693_3202897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001072142.1\|3197533_3197920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379539
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	8.42665e-19
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	gnl\|CDD\|227269	COG4933, COG4933, Uncharacterized conserved protein [Function unknown].	3.39436e-15
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.93443e-108
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|131635	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.	1.44797e-102
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	5.92572e-10
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	6.53749e-45
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	gnl\|CDD\|372509	pfam13166, AAA_13, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.	1.04046e-06
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.59841e-135
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.43706e-156
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.32745e-84
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	6.55101e-165
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	0.00101694
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0

>NZ_CP006723.1|WP_000110275.1|3202693_3202897_-|hypothetical-protein
MSVFKGGEQVYRFLSLFFMFGFFRSAYFVSKDHFVSNIKIQVCLSSSPIINLAGIFTRKKNERWAIN
>NZ_CP006723.1|WP_000683530.1|3202288_3202573_+|CRISPR-associated-endonuclease-Cas2
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEKKSAWPEAPKTLKIL
>NZ_CP006723.1|WP_002063811.1|3200663_3202289_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MGIHSLLYCERLFYLEEVEGILVADDRVYAGRTLHEELEPNEDSSGRIESFHYTSEKLEVSGKVDRIQKRDGDWIPYEHKRGRARIGTNGPEAWESDQCQVTVYALLLEEATGRNISEGKIRYHGSKDLVKIEIDEELRSKALKTIDRAKELSTSTNRPPVAQNENLCKNCSLAPVCLPEETRVITENEYEPIRLFPEKREKTTLHVFGHDSRIKKSDNVLLVEKVTETGEKSKSEKIPIQEIESVNIHGNCQISSQMIKFLVSEEIPVHWFSGGGNYIGGININPSGVQRRIRQFKALTKETIRLNLAKKLVSAKCESQLRYLLRATRGKDETRNETESYLATIRSGLKNIESADSPSQLLGIEGSSARAYFSGLPALLKNSDPFLVPNGRSKRPPKDPFNATLSFLYSLLYKSVRQAIIAVGLDPSFGFYHTPRSSAEPLVLDLMELFRVSLCDMTLIGSINRKSWIDEDFEITKNKVWLSESGRKKATQLYETRLDDTWKHPVVNYSLSYYRMIELEVRLLEKEWSGEANIFAQARLR
>NZ_CP006723.1|WP_082267386.1|3199975_3200185_+|hypothetical-protein
MGPLQSNLHLNTTSKLRIRAEQPLLSHRLKLAGKNLEVSQDKIQLGIPIIGLLKPHKTLYSRLIGSANI
>NZ_CP006723.1|WP_000578383.1|3198577_3199453_+|hypothetical-protein
MIFVLEYCLENPKSIFLVIPKDFETVREKFPFLKRKVIATYFGFHPSSLNVLEKITDSAVQNGYLKTFQNLYSIPVFQKAFHHLPIINEFIIQFFNYSRAKNWNEKWDILFLKDLLFRFPNPNFEEEDFERTFQLYEEVKRFSPSWKIRSLEHLKDLEQKMIQKIQKNEFIGPDQPYPTPPMEKEDWLEPINSRKELFLESRIQHNCIFSYDTRILEGKYYIYRIFFPERCTLSLFYINGDWYLDQIAAAFNKEAKAETLRKVEKWRMQNGIFVLGDAFRLGIPPDWIFAR
>NZ_CP006723.1|WP_025180030.1|3198103_3198316_-|hypothetical-protein
MEVAFSKAGQPVRFRMLKYSLMFSLLYLLRDSEYLWSVLISAFFISLTVHLWFGYRTKFWTTALGNINKL
>NZ_CP006723.1|WP_001072142.1|3197533_3197920_+|hypothetical-protein
MNQKIFKSIWAIIAGFLTIFILSTAVDLILHQTGIYPPMGVIMSDELFTLATAYRVLFGILSGYVTAKIAPDQPVKHSLALGVLGLIVSITGAIVMWDAGPAWYSLAIIAIALPCSWAGGILYERSQT
>NZ_CP006723.1|WP_001110344.1|3196639_3197191_+|hypothetical-protein
MNYYILEEVNYHLNIPYIGDLPEELDTIDVMTGRKIEISNLPIRVPIKIDYESEIVYPDIMTADLPLFSEKIRNSLDQIEIKNIQYYPVELFEDQTGQTKANYYMSILPVSVECLKSGINRSPAGRLILKNPIIDPTKILGLKLFRLGEEPSLIIIDSMVKDTLTNAHLNGVSFIPLEEYTSS
>NZ_CP006723.1|WP_045192693.1|3194039_3195536_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIKISGLNKAFTTKVLFDDLNLSINRGEKVGLVGRNGHGKSTLFQVILGNVEADSGTISIPKGYKIGHLQQHLHFTKPTVLEECSLGLPEGEEYETWKVEKILSGLGFSEQDMEKNPNEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEEFLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEIFIAKFKAKASFASRAQSRVKKLEKQGEMKELEKIQDLELYFNSAPFNANQMLSAENLSFSYDGKEPFLIENFSISVGSRERICIIGKNGKGKSTLLKILAGELETSQGTIKKHPVLKEGYFGQTNKLNLNENSTVVEEIMISDPSCNEWKARTIAGGLMFSEDQALKKIKVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFDGSVIMVTHDELHLRAVATKLIVFDNDSIQIFNGSYDDFLNDVGWSNEYY
>NZ_CP006723.1|WP_001060167.1|3192837_3193674_+|aldo/keto-reductase
MNNKENPLKQTIMLNNGISMPILGLGVWKTKSGKECKEAVLNALEAGYRHIDTARIYDNEVDVGQAIRESGIPRKEIFITTKLWNADQGSDKTRKALENSLDRLGIDFVDLYLIHFPVTSKRMDSWKELEKLYHDKLCKAIGVSNYTIIHLTELLKNSQITPAVNQVEFHPFLNQIYLLEYCKKHKIQLEAYSPLAHGQKIEDPTIAKIAQKYDKTPAQILIRWAIEQKIVVIPKSIKKERIIENSKVFDFAISEEDMKILNSLDEDFRTCWDPSEVV
>NZ_CP006723.1|WP_045193372.1|3208367_3210626_+|CRISPR-associated-helicase/endonuclease-Cas3
MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANEDFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQGVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGADALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPTMGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRILHSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQVLIIPFQGKPYEKENEDDGESELERCKEILKPLLDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAKPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQKQFSYGEPPLRIPVVPDSQIQYSSVRGGEWNLN
>NZ_CP006723.1|WP_000098772.1|3210627_3212511_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MSSRPSASIETTPNTPVVFQRGLSECTSPLLRAGLAGLYSTLYSLKDEKKPKTLSWELTQDSIQITSKGEFSKDFQWIINHGYQTKEGIFYCPGIHRSKTIHKDRMHFHNAMMGTFLQHGRIQVRTKGGGTAVSIEDECKLLYFPLLVEEKKIKYRKDAESILFAEKRGSTWSFENLVELSGYVMPGAPPRFTHETSWIGTIADAFLLFFAPLSCSFAEIEPSRGTWCILIPELEDLETFERFRRDYEVNTINMFAGGPGDAALRYLTEMDLTGNKKDFSPNGCEVYVIGKVAWNKKQQVRRLMMRIHPTEKNFRIYKKMRGIFQNKIHLKKTDASSKSKESRTRSTDKNKTQKKKDENYHWVSSPYAAARIAENLVQGKRWYYQFAKPLSWYIDTLERKRKSSPGSSHEKIWFESIRRFERAELIKFMENNEIWNSEEEQWFVKSFHETLSRLYAKEASHLNRRGGSRTLGDRWKHMNEKIYRDLAQAKTSPQIRTVISDLWAKSGRPPSLQEHTGALWKFISKDSEYARDLSLVALASYQGSSSLFRETVKDAVQKDEGRQLSLNLEKATTQEQVLKAYQTLWDFVETNDEEKNDLEVFVTKNWKRALEIGQEEIQKAKKKSNDA
>NZ_CP006723.1|WP_000052104.1|3212575_3213415_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSLHIFGTILTPHGVAANNRGENEGNLSTLQKLLWNGEVHSTVSGEAIRYALRETWMEDHENLLNRKIKSEGYDWQDETFKKPDRYLDDTILGFMDPKKETNKRRASLEITRAVSTRPWIGDVSFNVASVGAQRTNKNPIPYATEIHATRYQYSFALSGDDVKSEWKGLALDGLASLRRVAGNHSRFLYDFSPESIVLRVTHDPAPRILYCFREEGDTIDLKNLAKRVASGDVKAEELILGGEIASEQDAIELKTKGATVFPGIKAAVEDAKKRIGKSA
>NZ_CP006723.1|WP_000371342.1|3213435_3214059_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MDPLILYYEIPIASFRPYQSREYQDSYPVPPPSTLIGMSLSLCGLSMDHRKFFSSCEMCSAVADSNPARSTVLRRMRRLGDSGRDPKQRRPEYQELVTGIRGIVAYRGLPAELAKPMKTVLTTPEKIIRYGGLSLGESSFLVDVIRLFGLPDTTQSNWSWLIPDMKGSLDLPVWIDTISPSLTTKFRFSFQSAEGIPENAWFKLRPS
>NZ_CP006723.1|WP_001140541.1|3215189_3215618_+|hypothetical-protein
MAKTKNRRVVFLPIKPEFAHKIINGEKNIEFRKKFSSQEVETIVIYSSSPEKRVIGYATVDSIVIDTPDSLWKRFYKKGGIDKDRFSFYFNGKETGIGIRIKNVSRLKEAVTPTQLGIQGAIPQNFKFLEKGIITILERNLI
>NZ_CP006723.1|WP_000533550.1|3215610_3215793_-|hypothetical-protein
MGRRGKIATEHNASEILRDLSLPNFTFSAMILKKALKFLLSFVSRSLVSKANSNLVFFLK
>NZ_CP006723.1|WP_045192701.1|3215967_3217509_+|type-I-restriction-modification-system-subunit-M
MTSAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQYSKLNDKKITKEIKDDAIKTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSANGFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAIHKQTRINKIYDPACGSGSLLLQAKKQFDDHIIEEGFFGQEINHTTYNLARMNMFLHNINYDKFDIELGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALSYLSSKGRAAIVCFPGIFYRSGAEQKIRQYLVGNNFVETVISLAPNLFFGTTIAVNILVLSKHKTDTNTQFIDASGLFKKETNNNILTEDHIERIMQTFDSKVDTEHFAKSVSVETIANNDYNLSVSSYVEAKDNREVIDIQKLNAELKTTVEKIDQLRADIDAIVVEIEG
>NZ_CP006723.1|WP_061237873.1|3217505_3218729_+|restriction-endonuclease-subunit-S
MSKSFMEKLLKGTSVEWKTLGEVGDFIRGSGIQKSNFTESGTGCIHYGQIHTHYGTWADETKSFINPEFAARLRKAHTGNLVIATTSEDDDALAKAVAWLGDEEVAVSTDAYIYRHTINPKYMSYFFQTELFRSQKKPYITGTKVRRISGESLAKIQIPIPPLPAQEEIVRILDAFTELTTELTTELSARKKQYNYYRDQLLSFEEGEVEWKTLGDVAKKISSGGTPQTGVWEFYDGDIPWLRTQEINFEEIWDTGIKITEAGLKNSSAKWIPANCVIVAMYGATVGKIGINKIPMTTNQACANIELDENIANYQYVFHFLSSQYKYIKSLGSGPQTNINAQIVKKIQIPIPPLAEQERIVAILDKFDALTNSISEGLPREIELRQKQYEYYRELLLSFPKAEVGPT
>NZ_CP006723.1|WP_000061330.1|3218725_3219877_+|AAA-family-ATPase
MSMDIVKLLKDADQKVQLLYAFNGTGKTRLSREFKQLVAPKNNRDEADQAESSHNKILYYNASTEDLFFWDNDLEKDAEPKLKIQSNSFTDWILKDQGQDRNIITNFQHYTNEKLTPRFNEAYTVKDKNEQEVIVKEFSEVTFSLTRGNEEHSGNLKISKGEESNFIWSIFYSLLEQVISVLNVIDSSEQETDQFDQLEYVFIDDPVSSLDENHLIELAAELIQSSKSDIRFLITTHNPLFYNVLHNEFKKDTFKKYILKKQEDESYELANQSTDSPFSYHLHLKAELEKAIETGQLHKYHFNFLRNILEKTSTFVGLERWGDLLPKTEDGDPNPYEVRIINFSSHSKHSDNEVVEVPDEHRRVLSFLVKKLDEMYRLRMRTK
>NZ_CP006723.1|WP_000141542.1|3219894_3222993_+|type-I-restriction-endonuclease-subunit-R
MTEYKTIAESNHFIVLDKYTREWQVSESYQSEADLEKELVQDLKNQGYEFRTDISTPEKMLANVRERLQALNAMQFSEGEWLRFVETWLDKPSDTVIDKTRKIHDDYIHDFVFDDGHIQNIYLLDKKNIARNKVEVIRQFEQAGTHSNRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYSKESFNSEHSLFKYLQLFVISNGTDSRYFANTTHRNKNSFDFTMNWAKADNSLMKDLKDFTATFFQKNTLLNVLLTYSVFDVSDTLLVMRPYQIAATERILWKIKSSFGTKNWSKPESGGYIWHTTGSGKTLTSFKAARLSTELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSDSTAGLKRNLEMDDNKIIVTTIQKLNNLIKSESDLSIYNKQVVFIFDEAHRSQFGEAQKNLRKKFKKFYQFGFTGTPIFPQNALGADTTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPKFKEIETEQDEKKLTAAENKQALLHEERIREISQYILNQFKQKTHRLQPSSKGFNAMFAVSSVDAAKLYYESFKEVQKDQDKPLKVATIFSFSANEEQDAVGEIQDESFEVSAMESTAKEFLSAAINDYNIMFQTNFGVDSNSFQNYYRDLAKKVKDREIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLLQAYSRTNRIYDATKTFGNIITFRDLEKATIEAITLYGDKNTKNVVLEKSYKEYMEGFTDLATGEARRGYVDVVAELQQRFPKPEEIEKESDKKAFVKLFGEYLRVENVLQNYDEFTSLKALQSVDMNNQEAVEEFKAKHYVSDEGLAALQKIQVPAERKIQDYRSTYNDIRDWLRRQKSGDEKVKPRIDWDDVVFEVDLLKSQEINLDYILELIFEHNKKVKNKSILIEDIRRVIRASIGNRAKESLMIDFINQTDLDQISDKASVIDAFFSFAQTEQKREADELIQTENLNAEAAKRYITSSLRREFASENGTELNTILPKMSPLHPQYLTIKQSVFQKVSAFVEKFKGVGGQI

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Crispr_ID: NZ_CP006723_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_11

3204542-3204791

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CRISPRCasFinder
CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCACAT	PILER-CR

3 spacers

cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

The CRISPR arrays of NZ_CP006723_11

>merge|NZ_CP006723|11|3204542-3204791|CRISPRCasFinder,PILER-CR
ACTTACAAAAATCGGGTGCCGGTAGGCGTTGAGCACGGATTAGCGTTTGGGGTTCCACGGCTTGGGGTATCCTGAATATAACTTTGATGCCGGTAGGCGTTGAGCACATCTTACGATTCTTGTTGGAAGAAACTCAATCTGCTGAATATAACTTTGATGCCGCTAGGCGTTGAGCACATTTGACTCTGCAAAACTTTTGCCTCAAATTCAGGACTGAATATAACTTTGATGCCGTTAGGCGATTTAGATG

>NZ_CP006723|11|11|3204542-3204791|CRISPRCasFinder
ACTTACAAAAATCGGGTGCCGGTAGGCGTTGAGCAC	GGATTAGCGTTTGGGGTTCCACGGCTTGGGGTATC
CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC	ATCTTACGATTCTTGTTGGAAGAAACTCAATCTG
CTGAATATAACTTTGATGCCGCTAGGCGTTGAGCAC	ATTTGACTCTGCAAAACTTTTGCCTCAAATTCAGGA
CTGAATATAACTTTGATGCCGTTAGGCGATTTAGATG

>NZ_CP006723|11|2|3204558-3204720|PILER-CR
TGCCGGTAGGCGTTGAGCACGGATTAGCGTTTGGGGTTCCACGG	CTTGGGGTATCCTGAATATAACTTTGATGCCGGTA
GGCGTTGAGCACATCTTACGATTCTTGTTGGAAGAAACTCAATC	TGCTGAATATAACTTTGATGCCGCTAG
GCGTTGAGCACAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP006723.1\|WP_001110344.1\|3196639_3197191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227269
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|131635
NZ_CP006723.1\|WP_025180030.1\|3198103_3198316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000533550.1\|3215610_3215793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|372509
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NZ_CP006723.1\|WP_000110275.1\|3202693_3202897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001072142.1\|3197533_3197920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379539
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	8.42665e-19
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	gnl\|CDD\|227269	COG4933, COG4933, Uncharacterized conserved protein [Function unknown].	3.39436e-15
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.93443e-108
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|131635	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.	1.44797e-102
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	5.92572e-10
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	6.53749e-45
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	gnl\|CDD\|372509	pfam13166, AAA_13, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.	1.04046e-06
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.59841e-135
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.43706e-156
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.32745e-84
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	6.55101e-165
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	0.00101694
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0

>NZ_CP006723.1|WP_000110275.1|3202693_3202897_-|hypothetical-protein
MSVFKGGEQVYRFLSLFFMFGFFRSAYFVSKDHFVSNIKIQVCLSSSPIINLAGIFTRKKNERWAIN
>NZ_CP006723.1|WP_000683530.1|3202288_3202573_+|CRISPR-associated-endonuclease-Cas2
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEKKSAWPEAPKTLKIL
>NZ_CP006723.1|WP_002063811.1|3200663_3202289_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MGIHSLLYCERLFYLEEVEGILVADDRVYAGRTLHEELEPNEDSSGRIESFHYTSEKLEVSGKVDRIQKRDGDWIPYEHKRGRARIGTNGPEAWESDQCQVTVYALLLEEATGRNISEGKIRYHGSKDLVKIEIDEELRSKALKTIDRAKELSTSTNRPPVAQNENLCKNCSLAPVCLPEETRVITENEYEPIRLFPEKREKTTLHVFGHDSRIKKSDNVLLVEKVTETGEKSKSEKIPIQEIESVNIHGNCQISSQMIKFLVSEEIPVHWFSGGGNYIGGININPSGVQRRIRQFKALTKETIRLNLAKKLVSAKCESQLRYLLRATRGKDETRNETESYLATIRSGLKNIESADSPSQLLGIEGSSARAYFSGLPALLKNSDPFLVPNGRSKRPPKDPFNATLSFLYSLLYKSVRQAIIAVGLDPSFGFYHTPRSSAEPLVLDLMELFRVSLCDMTLIGSINRKSWIDEDFEITKNKVWLSESGRKKATQLYETRLDDTWKHPVVNYSLSYYRMIELEVRLLEKEWSGEANIFAQARLR
>NZ_CP006723.1|WP_082267386.1|3199975_3200185_+|hypothetical-protein
MGPLQSNLHLNTTSKLRIRAEQPLLSHRLKLAGKNLEVSQDKIQLGIPIIGLLKPHKTLYSRLIGSANI
>NZ_CP006723.1|WP_000578383.1|3198577_3199453_+|hypothetical-protein
MIFVLEYCLENPKSIFLVIPKDFETVREKFPFLKRKVIATYFGFHPSSLNVLEKITDSAVQNGYLKTFQNLYSIPVFQKAFHHLPIINEFIIQFFNYSRAKNWNEKWDILFLKDLLFRFPNPNFEEEDFERTFQLYEEVKRFSPSWKIRSLEHLKDLEQKMIQKIQKNEFIGPDQPYPTPPMEKEDWLEPINSRKELFLESRIQHNCIFSYDTRILEGKYYIYRIFFPERCTLSLFYINGDWYLDQIAAAFNKEAKAETLRKVEKWRMQNGIFVLGDAFRLGIPPDWIFAR
>NZ_CP006723.1|WP_025180030.1|3198103_3198316_-|hypothetical-protein
MEVAFSKAGQPVRFRMLKYSLMFSLLYLLRDSEYLWSVLISAFFISLTVHLWFGYRTKFWTTALGNINKL
>NZ_CP006723.1|WP_001072142.1|3197533_3197920_+|hypothetical-protein
MNQKIFKSIWAIIAGFLTIFILSTAVDLILHQTGIYPPMGVIMSDELFTLATAYRVLFGILSGYVTAKIAPDQPVKHSLALGVLGLIVSITGAIVMWDAGPAWYSLAIIAIALPCSWAGGILYERSQT
>NZ_CP006723.1|WP_001110344.1|3196639_3197191_+|hypothetical-protein
MNYYILEEVNYHLNIPYIGDLPEELDTIDVMTGRKIEISNLPIRVPIKIDYESEIVYPDIMTADLPLFSEKIRNSLDQIEIKNIQYYPVELFEDQTGQTKANYYMSILPVSVECLKSGINRSPAGRLILKNPIIDPTKILGLKLFRLGEEPSLIIIDSMVKDTLTNAHLNGVSFIPLEEYTSS
>NZ_CP006723.1|WP_045192693.1|3194039_3195536_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIKISGLNKAFTTKVLFDDLNLSINRGEKVGLVGRNGHGKSTLFQVILGNVEADSGTISIPKGYKIGHLQQHLHFTKPTVLEECSLGLPEGEEYETWKVEKILSGLGFSEQDMEKNPNEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEEFLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEIFIAKFKAKASFASRAQSRVKKLEKQGEMKELEKIQDLELYFNSAPFNANQMLSAENLSFSYDGKEPFLIENFSISVGSRERICIIGKNGKGKSTLLKILAGELETSQGTIKKHPVLKEGYFGQTNKLNLNENSTVVEEIMISDPSCNEWKARTIAGGLMFSEDQALKKIKVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFDGSVIMVTHDELHLRAVATKLIVFDNDSIQIFNGSYDDFLNDVGWSNEYY
>NZ_CP006723.1|WP_001060167.1|3192837_3193674_+|aldo/keto-reductase
MNNKENPLKQTIMLNNGISMPILGLGVWKTKSGKECKEAVLNALEAGYRHIDTARIYDNEVDVGQAIRESGIPRKEIFITTKLWNADQGSDKTRKALENSLDRLGIDFVDLYLIHFPVTSKRMDSWKELEKLYHDKLCKAIGVSNYTIIHLTELLKNSQITPAVNQVEFHPFLNQIYLLEYCKKHKIQLEAYSPLAHGQKIEDPTIAKIAQKYDKTPAQILIRWAIEQKIVVIPKSIKKERIIENSKVFDFAISEEDMKILNSLDEDFRTCWDPSEVV
>NZ_CP006723.1|WP_045193372.1|3208367_3210626_+|CRISPR-associated-helicase/endonuclease-Cas3
MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANEDFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQGVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGADALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPTMGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRILHSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQVLIIPFQGKPYEKENEDDGESELERCKEILKPLLDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAKPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQKQFSYGEPPLRIPVVPDSQIQYSSVRGGEWNLN
>NZ_CP006723.1|WP_000098772.1|3210627_3212511_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MSSRPSASIETTPNTPVVFQRGLSECTSPLLRAGLAGLYSTLYSLKDEKKPKTLSWELTQDSIQITSKGEFSKDFQWIINHGYQTKEGIFYCPGIHRSKTIHKDRMHFHNAMMGTFLQHGRIQVRTKGGGTAVSIEDECKLLYFPLLVEEKKIKYRKDAESILFAEKRGSTWSFENLVELSGYVMPGAPPRFTHETSWIGTIADAFLLFFAPLSCSFAEIEPSRGTWCILIPELEDLETFERFRRDYEVNTINMFAGGPGDAALRYLTEMDLTGNKKDFSPNGCEVYVIGKVAWNKKQQVRRLMMRIHPTEKNFRIYKKMRGIFQNKIHLKKTDASSKSKESRTRSTDKNKTQKKKDENYHWVSSPYAAARIAENLVQGKRWYYQFAKPLSWYIDTLERKRKSSPGSSHEKIWFESIRRFERAELIKFMENNEIWNSEEEQWFVKSFHETLSRLYAKEASHLNRRGGSRTLGDRWKHMNEKIYRDLAQAKTSPQIRTVISDLWAKSGRPPSLQEHTGALWKFISKDSEYARDLSLVALASYQGSSSLFRETVKDAVQKDEGRQLSLNLEKATTQEQVLKAYQTLWDFVETNDEEKNDLEVFVTKNWKRALEIGQEEIQKAKKKSNDA
>NZ_CP006723.1|WP_000052104.1|3212575_3213415_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSLHIFGTILTPHGVAANNRGENEGNLSTLQKLLWNGEVHSTVSGEAIRYALRETWMEDHENLLNRKIKSEGYDWQDETFKKPDRYLDDTILGFMDPKKETNKRRASLEITRAVSTRPWIGDVSFNVASVGAQRTNKNPIPYATEIHATRYQYSFALSGDDVKSEWKGLALDGLASLRRVAGNHSRFLYDFSPESIVLRVTHDPAPRILYCFREEGDTIDLKNLAKRVASGDVKAEELILGGEIASEQDAIELKTKGATVFPGIKAAVEDAKKRIGKSA
>NZ_CP006723.1|WP_000371342.1|3213435_3214059_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MDPLILYYEIPIASFRPYQSREYQDSYPVPPPSTLIGMSLSLCGLSMDHRKFFSSCEMCSAVADSNPARSTVLRRMRRLGDSGRDPKQRRPEYQELVTGIRGIVAYRGLPAELAKPMKTVLTTPEKIIRYGGLSLGESSFLVDVIRLFGLPDTTQSNWSWLIPDMKGSLDLPVWIDTISPSLTTKFRFSFQSAEGIPENAWFKLRPS
>NZ_CP006723.1|WP_001140541.1|3215189_3215618_+|hypothetical-protein
MAKTKNRRVVFLPIKPEFAHKIINGEKNIEFRKKFSSQEVETIVIYSSSPEKRVIGYATVDSIVIDTPDSLWKRFYKKGGIDKDRFSFYFNGKETGIGIRIKNVSRLKEAVTPTQLGIQGAIPQNFKFLEKGIITILERNLI
>NZ_CP006723.1|WP_000533550.1|3215610_3215793_-|hypothetical-protein
MGRRGKIATEHNASEILRDLSLPNFTFSAMILKKALKFLLSFVSRSLVSKANSNLVFFLK
>NZ_CP006723.1|WP_045192701.1|3215967_3217509_+|type-I-restriction-modification-system-subunit-M
MTSAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQYSKLNDKKITKEIKDDAIKTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSANGFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAIHKQTRINKIYDPACGSGSLLLQAKKQFDDHIIEEGFFGQEINHTTYNLARMNMFLHNINYDKFDIELGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALSYLSSKGRAAIVCFPGIFYRSGAEQKIRQYLVGNNFVETVISLAPNLFFGTTIAVNILVLSKHKTDTNTQFIDASGLFKKETNNNILTEDHIERIMQTFDSKVDTEHFAKSVSVETIANNDYNLSVSSYVEAKDNREVIDIQKLNAELKTTVEKIDQLRADIDAIVVEIEG
>NZ_CP006723.1|WP_061237873.1|3217505_3218729_+|restriction-endonuclease-subunit-S
MSKSFMEKLLKGTSVEWKTLGEVGDFIRGSGIQKSNFTESGTGCIHYGQIHTHYGTWADETKSFINPEFAARLRKAHTGNLVIATTSEDDDALAKAVAWLGDEEVAVSTDAYIYRHTINPKYMSYFFQTELFRSQKKPYITGTKVRRISGESLAKIQIPIPPLPAQEEIVRILDAFTELTTELTTELSARKKQYNYYRDQLLSFEEGEVEWKTLGDVAKKISSGGTPQTGVWEFYDGDIPWLRTQEINFEEIWDTGIKITEAGLKNSSAKWIPANCVIVAMYGATVGKIGINKIPMTTNQACANIELDENIANYQYVFHFLSSQYKYIKSLGSGPQTNINAQIVKKIQIPIPPLAEQERIVAILDKFDALTNSISEGLPREIELRQKQYEYYRELLLSFPKAEVGPT
>NZ_CP006723.1|WP_000061330.1|3218725_3219877_+|AAA-family-ATPase
MSMDIVKLLKDADQKVQLLYAFNGTGKTRLSREFKQLVAPKNNRDEADQAESSHNKILYYNASTEDLFFWDNDLEKDAEPKLKIQSNSFTDWILKDQGQDRNIITNFQHYTNEKLTPRFNEAYTVKDKNEQEVIVKEFSEVTFSLTRGNEEHSGNLKISKGEESNFIWSIFYSLLEQVISVLNVIDSSEQETDQFDQLEYVFIDDPVSSLDENHLIELAAELIQSSKSDIRFLITTHNPLFYNVLHNEFKKDTFKKYILKKQEDESYELANQSTDSPFSYHLHLKAELEKAIETGQLHKYHFNFLRNILEKTSTFVGLERWGDLLPKTEDGDPNPYEVRIINFSSHSKHSDNEVVEVPDEHRRVLSFLVKKLDEMYRLRMRTK
>NZ_CP006723.1|WP_000141542.1|3219894_3222993_+|type-I-restriction-endonuclease-subunit-R
MTEYKTIAESNHFIVLDKYTREWQVSESYQSEADLEKELVQDLKNQGYEFRTDISTPEKMLANVRERLQALNAMQFSEGEWLRFVETWLDKPSDTVIDKTRKIHDDYIHDFVFDDGHIQNIYLLDKKNIARNKVEVIRQFEQAGTHSNRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYSKESFNSEHSLFKYLQLFVISNGTDSRYFANTTHRNKNSFDFTMNWAKADNSLMKDLKDFTATFFQKNTLLNVLLTYSVFDVSDTLLVMRPYQIAATERILWKIKSSFGTKNWSKPESGGYIWHTTGSGKTLTSFKAARLSTELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSDSTAGLKRNLEMDDNKIIVTTIQKLNNLIKSESDLSIYNKQVVFIFDEAHRSQFGEAQKNLRKKFKKFYQFGFTGTPIFPQNALGADTTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPKFKEIETEQDEKKLTAAENKQALLHEERIREISQYILNQFKQKTHRLQPSSKGFNAMFAVSSVDAAKLYYESFKEVQKDQDKPLKVATIFSFSANEEQDAVGEIQDESFEVSAMESTAKEFLSAAINDYNIMFQTNFGVDSNSFQNYYRDLAKKVKDREIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLLQAYSRTNRIYDATKTFGNIITFRDLEKATIEAITLYGDKNTKNVVLEKSYKEYMEGFTDLATGEARRGYVDVVAELQQRFPKPEEIEKESDKKAFVKLFGEYLRVENVLQNYDEFTSLKALQSVDMNNQEAVEEFKAKHYVSDEGLAALQKIQVPAERKIQDYRSTYNDIRDWLRRQKSGDEKVKPRIDWDDVVFEVDLLKSQEINLDYILELIFEHNKKVKNKSILIEDIRRVIRASIGNRAKESLMIDFINQTDLDQISDKASVIDAFFSFAQTEQKREADELIQTENLNAEAAKRYITSSLRREFASENGTELNTILPKMSPLHPQYLTIKQSVFQKVSAFVEKFKGVGGQI

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Crispr_ID: NZ_CP006723_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_12

3204948-3205340

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CRISPRCasFinder
CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC	PILER-CR

5 spacers

cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

The CRISPR arrays of NZ_CP006723_12

>merge|NZ_CP006723|12|3204948-3205340|CRISPRCasFinder,PILER-CR
CTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACGAATAACTCGTTCGGAAAGCGTTCTGCGGATCTTCTGAATATAACTTTGATGCCGGTAGGCGTTGAGCACTTGATCGAAAGTCTTCGAATATTAAAATCCGATCCCTGAATATAACTTTGATGCCGGTAGGCGTTGAGCACTCCCTATCGGTTCTTATACGAAGTGGCAAAAAGAGCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACAGCGTGCAACAAAACACGGAATACAATTCTCTTTGCCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACAGCGTGCAACAAAACACGGAATACAATTCTCTTTGCCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACA

>NZ_CP006723|12|12|3204948-3205340|CRISPRCasFinder
CTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCAC	GAATAACTCGTTCGGAAAGCGTTCTGCGGATCTT
CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC	TTGATCGAAAGTCTTCGAATATTAAAATCCGATCC
CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC	TCCCTATCGGTTCTTATACGAAGTGGCAAAAAGAG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AGCGTGCAACAAAACACGGAATACAATTCTCTTTGC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AGCGTGCAACAAAACACGGAATACAATTCTCTTTGC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACA

>NZ_CP006723|12|3|3205018-3205267|PILER-CR
CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC	TTGATCGAAAGTCTTCGAATATTAAAATCCGATCC
CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC	TCCCTATCGGTTCTTATACGAAGTGGCAAAAAGAG
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	AGCGTGCAACAAAACACGGAATACAATTCTCTTTGC
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP006723.1\|WP_001110344.1\|3196639_3197191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227269
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|131635
NZ_CP006723.1\|WP_025180030.1\|3198103_3198316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000533550.1\|3215610_3215793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|372509
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NZ_CP006723.1\|WP_000110275.1\|3202693_3202897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001072142.1\|3197533_3197920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379539
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	8.42665e-19
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	gnl\|CDD\|227269	COG4933, COG4933, Uncharacterized conserved protein [Function unknown].	3.39436e-15
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.93443e-108
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|131635	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.	1.44797e-102
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	5.92572e-10
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	6.53749e-45
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	gnl\|CDD\|372509	pfam13166, AAA_13, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.	1.04046e-06
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.59841e-135
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.43706e-156
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.32745e-84
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	6.55101e-165
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	0.00101694
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0

>NZ_CP006723.1|WP_000110275.1|3202693_3202897_-|hypothetical-protein
MSVFKGGEQVYRFLSLFFMFGFFRSAYFVSKDHFVSNIKIQVCLSSSPIINLAGIFTRKKNERWAIN
>NZ_CP006723.1|WP_000683530.1|3202288_3202573_+|CRISPR-associated-endonuclease-Cas2
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEKKSAWPEAPKTLKIL
>NZ_CP006723.1|WP_002063811.1|3200663_3202289_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MGIHSLLYCERLFYLEEVEGILVADDRVYAGRTLHEELEPNEDSSGRIESFHYTSEKLEVSGKVDRIQKRDGDWIPYEHKRGRARIGTNGPEAWESDQCQVTVYALLLEEATGRNISEGKIRYHGSKDLVKIEIDEELRSKALKTIDRAKELSTSTNRPPVAQNENLCKNCSLAPVCLPEETRVITENEYEPIRLFPEKREKTTLHVFGHDSRIKKSDNVLLVEKVTETGEKSKSEKIPIQEIESVNIHGNCQISSQMIKFLVSEEIPVHWFSGGGNYIGGININPSGVQRRIRQFKALTKETIRLNLAKKLVSAKCESQLRYLLRATRGKDETRNETESYLATIRSGLKNIESADSPSQLLGIEGSSARAYFSGLPALLKNSDPFLVPNGRSKRPPKDPFNATLSFLYSLLYKSVRQAIIAVGLDPSFGFYHTPRSSAEPLVLDLMELFRVSLCDMTLIGSINRKSWIDEDFEITKNKVWLSESGRKKATQLYETRLDDTWKHPVVNYSLSYYRMIELEVRLLEKEWSGEANIFAQARLR
>NZ_CP006723.1|WP_082267386.1|3199975_3200185_+|hypothetical-protein
MGPLQSNLHLNTTSKLRIRAEQPLLSHRLKLAGKNLEVSQDKIQLGIPIIGLLKPHKTLYSRLIGSANI
>NZ_CP006723.1|WP_000578383.1|3198577_3199453_+|hypothetical-protein
MIFVLEYCLENPKSIFLVIPKDFETVREKFPFLKRKVIATYFGFHPSSLNVLEKITDSAVQNGYLKTFQNLYSIPVFQKAFHHLPIINEFIIQFFNYSRAKNWNEKWDILFLKDLLFRFPNPNFEEEDFERTFQLYEEVKRFSPSWKIRSLEHLKDLEQKMIQKIQKNEFIGPDQPYPTPPMEKEDWLEPINSRKELFLESRIQHNCIFSYDTRILEGKYYIYRIFFPERCTLSLFYINGDWYLDQIAAAFNKEAKAETLRKVEKWRMQNGIFVLGDAFRLGIPPDWIFAR
>NZ_CP006723.1|WP_025180030.1|3198103_3198316_-|hypothetical-protein
MEVAFSKAGQPVRFRMLKYSLMFSLLYLLRDSEYLWSVLISAFFISLTVHLWFGYRTKFWTTALGNINKL
>NZ_CP006723.1|WP_001072142.1|3197533_3197920_+|hypothetical-protein
MNQKIFKSIWAIIAGFLTIFILSTAVDLILHQTGIYPPMGVIMSDELFTLATAYRVLFGILSGYVTAKIAPDQPVKHSLALGVLGLIVSITGAIVMWDAGPAWYSLAIIAIALPCSWAGGILYERSQT
>NZ_CP006723.1|WP_001110344.1|3196639_3197191_+|hypothetical-protein
MNYYILEEVNYHLNIPYIGDLPEELDTIDVMTGRKIEISNLPIRVPIKIDYESEIVYPDIMTADLPLFSEKIRNSLDQIEIKNIQYYPVELFEDQTGQTKANYYMSILPVSVECLKSGINRSPAGRLILKNPIIDPTKILGLKLFRLGEEPSLIIIDSMVKDTLTNAHLNGVSFIPLEEYTSS
>NZ_CP006723.1|WP_045192693.1|3194039_3195536_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIKISGLNKAFTTKVLFDDLNLSINRGEKVGLVGRNGHGKSTLFQVILGNVEADSGTISIPKGYKIGHLQQHLHFTKPTVLEECSLGLPEGEEYETWKVEKILSGLGFSEQDMEKNPNEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEEFLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEIFIAKFKAKASFASRAQSRVKKLEKQGEMKELEKIQDLELYFNSAPFNANQMLSAENLSFSYDGKEPFLIENFSISVGSRERICIIGKNGKGKSTLLKILAGELETSQGTIKKHPVLKEGYFGQTNKLNLNENSTVVEEIMISDPSCNEWKARTIAGGLMFSEDQALKKIKVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFDGSVIMVTHDELHLRAVATKLIVFDNDSIQIFNGSYDDFLNDVGWSNEYY
>NZ_CP006723.1|WP_001060167.1|3192837_3193674_+|aldo/keto-reductase
MNNKENPLKQTIMLNNGISMPILGLGVWKTKSGKECKEAVLNALEAGYRHIDTARIYDNEVDVGQAIRESGIPRKEIFITTKLWNADQGSDKTRKALENSLDRLGIDFVDLYLIHFPVTSKRMDSWKELEKLYHDKLCKAIGVSNYTIIHLTELLKNSQITPAVNQVEFHPFLNQIYLLEYCKKHKIQLEAYSPLAHGQKIEDPTIAKIAQKYDKTPAQILIRWAIEQKIVVIPKSIKKERIIENSKVFDFAISEEDMKILNSLDEDFRTCWDPSEVV
>NZ_CP006723.1|WP_045193372.1|3208367_3210626_+|CRISPR-associated-helicase/endonuclease-Cas3
MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANEDFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQGVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGADALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPTMGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRILHSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQVLIIPFQGKPYEKENEDDGESELERCKEILKPLLDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAKPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQKQFSYGEPPLRIPVVPDSQIQYSSVRGGEWNLN
>NZ_CP006723.1|WP_000098772.1|3210627_3212511_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MSSRPSASIETTPNTPVVFQRGLSECTSPLLRAGLAGLYSTLYSLKDEKKPKTLSWELTQDSIQITSKGEFSKDFQWIINHGYQTKEGIFYCPGIHRSKTIHKDRMHFHNAMMGTFLQHGRIQVRTKGGGTAVSIEDECKLLYFPLLVEEKKIKYRKDAESILFAEKRGSTWSFENLVELSGYVMPGAPPRFTHETSWIGTIADAFLLFFAPLSCSFAEIEPSRGTWCILIPELEDLETFERFRRDYEVNTINMFAGGPGDAALRYLTEMDLTGNKKDFSPNGCEVYVIGKVAWNKKQQVRRLMMRIHPTEKNFRIYKKMRGIFQNKIHLKKTDASSKSKESRTRSTDKNKTQKKKDENYHWVSSPYAAARIAENLVQGKRWYYQFAKPLSWYIDTLERKRKSSPGSSHEKIWFESIRRFERAELIKFMENNEIWNSEEEQWFVKSFHETLSRLYAKEASHLNRRGGSRTLGDRWKHMNEKIYRDLAQAKTSPQIRTVISDLWAKSGRPPSLQEHTGALWKFISKDSEYARDLSLVALASYQGSSSLFRETVKDAVQKDEGRQLSLNLEKATTQEQVLKAYQTLWDFVETNDEEKNDLEVFVTKNWKRALEIGQEEIQKAKKKSNDA
>NZ_CP006723.1|WP_000052104.1|3212575_3213415_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSLHIFGTILTPHGVAANNRGENEGNLSTLQKLLWNGEVHSTVSGEAIRYALRETWMEDHENLLNRKIKSEGYDWQDETFKKPDRYLDDTILGFMDPKKETNKRRASLEITRAVSTRPWIGDVSFNVASVGAQRTNKNPIPYATEIHATRYQYSFALSGDDVKSEWKGLALDGLASLRRVAGNHSRFLYDFSPESIVLRVTHDPAPRILYCFREEGDTIDLKNLAKRVASGDVKAEELILGGEIASEQDAIELKTKGATVFPGIKAAVEDAKKRIGKSA
>NZ_CP006723.1|WP_000371342.1|3213435_3214059_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MDPLILYYEIPIASFRPYQSREYQDSYPVPPPSTLIGMSLSLCGLSMDHRKFFSSCEMCSAVADSNPARSTVLRRMRRLGDSGRDPKQRRPEYQELVTGIRGIVAYRGLPAELAKPMKTVLTTPEKIIRYGGLSLGESSFLVDVIRLFGLPDTTQSNWSWLIPDMKGSLDLPVWIDTISPSLTTKFRFSFQSAEGIPENAWFKLRPS
>NZ_CP006723.1|WP_001140541.1|3215189_3215618_+|hypothetical-protein
MAKTKNRRVVFLPIKPEFAHKIINGEKNIEFRKKFSSQEVETIVIYSSSPEKRVIGYATVDSIVIDTPDSLWKRFYKKGGIDKDRFSFYFNGKETGIGIRIKNVSRLKEAVTPTQLGIQGAIPQNFKFLEKGIITILERNLI
>NZ_CP006723.1|WP_000533550.1|3215610_3215793_-|hypothetical-protein
MGRRGKIATEHNASEILRDLSLPNFTFSAMILKKALKFLLSFVSRSLVSKANSNLVFFLK
>NZ_CP006723.1|WP_045192701.1|3215967_3217509_+|type-I-restriction-modification-system-subunit-M
MTSAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQYSKLNDKKITKEIKDDAIKTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSANGFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAIHKQTRINKIYDPACGSGSLLLQAKKQFDDHIIEEGFFGQEINHTTYNLARMNMFLHNINYDKFDIELGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALSYLSSKGRAAIVCFPGIFYRSGAEQKIRQYLVGNNFVETVISLAPNLFFGTTIAVNILVLSKHKTDTNTQFIDASGLFKKETNNNILTEDHIERIMQTFDSKVDTEHFAKSVSVETIANNDYNLSVSSYVEAKDNREVIDIQKLNAELKTTVEKIDQLRADIDAIVVEIEG
>NZ_CP006723.1|WP_061237873.1|3217505_3218729_+|restriction-endonuclease-subunit-S
MSKSFMEKLLKGTSVEWKTLGEVGDFIRGSGIQKSNFTESGTGCIHYGQIHTHYGTWADETKSFINPEFAARLRKAHTGNLVIATTSEDDDALAKAVAWLGDEEVAVSTDAYIYRHTINPKYMSYFFQTELFRSQKKPYITGTKVRRISGESLAKIQIPIPPLPAQEEIVRILDAFTELTTELTTELSARKKQYNYYRDQLLSFEEGEVEWKTLGDVAKKISSGGTPQTGVWEFYDGDIPWLRTQEINFEEIWDTGIKITEAGLKNSSAKWIPANCVIVAMYGATVGKIGINKIPMTTNQACANIELDENIANYQYVFHFLSSQYKYIKSLGSGPQTNINAQIVKKIQIPIPPLAEQERIVAILDKFDALTNSISEGLPREIELRQKQYEYYRELLLSFPKAEVGPT
>NZ_CP006723.1|WP_000061330.1|3218725_3219877_+|AAA-family-ATPase
MSMDIVKLLKDADQKVQLLYAFNGTGKTRLSREFKQLVAPKNNRDEADQAESSHNKILYYNASTEDLFFWDNDLEKDAEPKLKIQSNSFTDWILKDQGQDRNIITNFQHYTNEKLTPRFNEAYTVKDKNEQEVIVKEFSEVTFSLTRGNEEHSGNLKISKGEESNFIWSIFYSLLEQVISVLNVIDSSEQETDQFDQLEYVFIDDPVSSLDENHLIELAAELIQSSKSDIRFLITTHNPLFYNVLHNEFKKDTFKKYILKKQEDESYELANQSTDSPFSYHLHLKAELEKAIETGQLHKYHFNFLRNILEKTSTFVGLERWGDLLPKTEDGDPNPYEVRIINFSSHSKHSDNEVVEVPDEHRRVLSFLVKKLDEMYRLRMRTK
>NZ_CP006723.1|WP_000141542.1|3219894_3222993_+|type-I-restriction-endonuclease-subunit-R
MTEYKTIAESNHFIVLDKYTREWQVSESYQSEADLEKELVQDLKNQGYEFRTDISTPEKMLANVRERLQALNAMQFSEGEWLRFVETWLDKPSDTVIDKTRKIHDDYIHDFVFDDGHIQNIYLLDKKNIARNKVEVIRQFEQAGTHSNRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYSKESFNSEHSLFKYLQLFVISNGTDSRYFANTTHRNKNSFDFTMNWAKADNSLMKDLKDFTATFFQKNTLLNVLLTYSVFDVSDTLLVMRPYQIAATERILWKIKSSFGTKNWSKPESGGYIWHTTGSGKTLTSFKAARLSTELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSDSTAGLKRNLEMDDNKIIVTTIQKLNNLIKSESDLSIYNKQVVFIFDEAHRSQFGEAQKNLRKKFKKFYQFGFTGTPIFPQNALGADTTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPKFKEIETEQDEKKLTAAENKQALLHEERIREISQYILNQFKQKTHRLQPSSKGFNAMFAVSSVDAAKLYYESFKEVQKDQDKPLKVATIFSFSANEEQDAVGEIQDESFEVSAMESTAKEFLSAAINDYNIMFQTNFGVDSNSFQNYYRDLAKKVKDREIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLLQAYSRTNRIYDATKTFGNIITFRDLEKATIEAITLYGDKNTKNVVLEKSYKEYMEGFTDLATGEARRGYVDVVAELQQRFPKPEEIEKESDKKAFVKLFGEYLRVENVLQNYDEFTSLKALQSVDMNNQEAVEEFKAKHYVSDEGLAALQKIQVPAERKIQDYRSTYNDIRDWLRRQKSGDEKVKPRIDWDDVVFEVDLLKSQEINLDYILELIFEHNKKVKNKSILIEDIRRVIRASIGNRAKESLMIDFINQTDLDQISDKASVIDAFFSFAQTEQKREADELIQTENLNAEAAKRYITSSLRREFASENGTELNTILPKMSPLHPQYLTIKQSVFQKVSAFVEKFKGVGGQI

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Crispr_ID: NZ_CP006723_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_13

3205823-3206003

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CRISPRCasFinder

2 spacers

cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

The CRISPR arrays of NZ_CP006723_13

>merge|NZ_CP006723|13|3205823-3206003|CRISPRCasFinder
CTTACAAAAATCGGGATGCCGGTAGGCGTTGAGCACCACAACCGTGACAAAAATCTGCAAATCCAACGACTCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACTGTGTATATCTTGATTTACTCAAAAGTGATAATTCTACTGAATATAACTTTGATGCCGTTAGGCGATTTAGGAT

>NZ_CP006723|13|13|3205823-3206003|CRISPRCasFinder
CTTACAAAAATCGGGATGCCGGTAGGCGTTGAGCAC	CACAACCGTGACAAAAATCTGCAAATCCAACGACT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	TGTGTATATCTTGATTTACTCAAAAGTGATAATTCTA
CTGAATATAACTTTGATGCCGTTAGGCGATTTAGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP006723.1\|WP_001110344.1\|3196639_3197191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227269
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|131635
NZ_CP006723.1\|WP_025180030.1\|3198103_3198316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000533550.1\|3215610_3215793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|372509
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NZ_CP006723.1\|WP_000110275.1\|3202693_3202897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001072142.1\|3197533_3197920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379539
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	8.42665e-19
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	gnl\|CDD\|227269	COG4933, COG4933, Uncharacterized conserved protein [Function unknown].	3.39436e-15
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.93443e-108
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|131635	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.	1.44797e-102
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	5.92572e-10
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	6.53749e-45
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	gnl\|CDD\|372509	pfam13166, AAA_13, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.	1.04046e-06
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.59841e-135
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.43706e-156
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.32745e-84
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	6.55101e-165
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	0.00101694
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0

>NZ_CP006723.1|WP_000110275.1|3202693_3202897_-|hypothetical-protein
MSVFKGGEQVYRFLSLFFMFGFFRSAYFVSKDHFVSNIKIQVCLSSSPIINLAGIFTRKKNERWAIN
>NZ_CP006723.1|WP_000683530.1|3202288_3202573_+|CRISPR-associated-endonuclease-Cas2
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEKKSAWPEAPKTLKIL
>NZ_CP006723.1|WP_002063811.1|3200663_3202289_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MGIHSLLYCERLFYLEEVEGILVADDRVYAGRTLHEELEPNEDSSGRIESFHYTSEKLEVSGKVDRIQKRDGDWIPYEHKRGRARIGTNGPEAWESDQCQVTVYALLLEEATGRNISEGKIRYHGSKDLVKIEIDEELRSKALKTIDRAKELSTSTNRPPVAQNENLCKNCSLAPVCLPEETRVITENEYEPIRLFPEKREKTTLHVFGHDSRIKKSDNVLLVEKVTETGEKSKSEKIPIQEIESVNIHGNCQISSQMIKFLVSEEIPVHWFSGGGNYIGGININPSGVQRRIRQFKALTKETIRLNLAKKLVSAKCESQLRYLLRATRGKDETRNETESYLATIRSGLKNIESADSPSQLLGIEGSSARAYFSGLPALLKNSDPFLVPNGRSKRPPKDPFNATLSFLYSLLYKSVRQAIIAVGLDPSFGFYHTPRSSAEPLVLDLMELFRVSLCDMTLIGSINRKSWIDEDFEITKNKVWLSESGRKKATQLYETRLDDTWKHPVVNYSLSYYRMIELEVRLLEKEWSGEANIFAQARLR
>NZ_CP006723.1|WP_082267386.1|3199975_3200185_+|hypothetical-protein
MGPLQSNLHLNTTSKLRIRAEQPLLSHRLKLAGKNLEVSQDKIQLGIPIIGLLKPHKTLYSRLIGSANI
>NZ_CP006723.1|WP_000578383.1|3198577_3199453_+|hypothetical-protein
MIFVLEYCLENPKSIFLVIPKDFETVREKFPFLKRKVIATYFGFHPSSLNVLEKITDSAVQNGYLKTFQNLYSIPVFQKAFHHLPIINEFIIQFFNYSRAKNWNEKWDILFLKDLLFRFPNPNFEEEDFERTFQLYEEVKRFSPSWKIRSLEHLKDLEQKMIQKIQKNEFIGPDQPYPTPPMEKEDWLEPINSRKELFLESRIQHNCIFSYDTRILEGKYYIYRIFFPERCTLSLFYINGDWYLDQIAAAFNKEAKAETLRKVEKWRMQNGIFVLGDAFRLGIPPDWIFAR
>NZ_CP006723.1|WP_025180030.1|3198103_3198316_-|hypothetical-protein
MEVAFSKAGQPVRFRMLKYSLMFSLLYLLRDSEYLWSVLISAFFISLTVHLWFGYRTKFWTTALGNINKL
>NZ_CP006723.1|WP_001072142.1|3197533_3197920_+|hypothetical-protein
MNQKIFKSIWAIIAGFLTIFILSTAVDLILHQTGIYPPMGVIMSDELFTLATAYRVLFGILSGYVTAKIAPDQPVKHSLALGVLGLIVSITGAIVMWDAGPAWYSLAIIAIALPCSWAGGILYERSQT
>NZ_CP006723.1|WP_001110344.1|3196639_3197191_+|hypothetical-protein
MNYYILEEVNYHLNIPYIGDLPEELDTIDVMTGRKIEISNLPIRVPIKIDYESEIVYPDIMTADLPLFSEKIRNSLDQIEIKNIQYYPVELFEDQTGQTKANYYMSILPVSVECLKSGINRSPAGRLILKNPIIDPTKILGLKLFRLGEEPSLIIIDSMVKDTLTNAHLNGVSFIPLEEYTSS
>NZ_CP006723.1|WP_045192693.1|3194039_3195536_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIKISGLNKAFTTKVLFDDLNLSINRGEKVGLVGRNGHGKSTLFQVILGNVEADSGTISIPKGYKIGHLQQHLHFTKPTVLEECSLGLPEGEEYETWKVEKILSGLGFSEQDMEKNPNEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEEFLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEIFIAKFKAKASFASRAQSRVKKLEKQGEMKELEKIQDLELYFNSAPFNANQMLSAENLSFSYDGKEPFLIENFSISVGSRERICIIGKNGKGKSTLLKILAGELETSQGTIKKHPVLKEGYFGQTNKLNLNENSTVVEEIMISDPSCNEWKARTIAGGLMFSEDQALKKIKVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFDGSVIMVTHDELHLRAVATKLIVFDNDSIQIFNGSYDDFLNDVGWSNEYY
>NZ_CP006723.1|WP_001060167.1|3192837_3193674_+|aldo/keto-reductase
MNNKENPLKQTIMLNNGISMPILGLGVWKTKSGKECKEAVLNALEAGYRHIDTARIYDNEVDVGQAIRESGIPRKEIFITTKLWNADQGSDKTRKALENSLDRLGIDFVDLYLIHFPVTSKRMDSWKELEKLYHDKLCKAIGVSNYTIIHLTELLKNSQITPAVNQVEFHPFLNQIYLLEYCKKHKIQLEAYSPLAHGQKIEDPTIAKIAQKYDKTPAQILIRWAIEQKIVVIPKSIKKERIIENSKVFDFAISEEDMKILNSLDEDFRTCWDPSEVV
>NZ_CP006723.1|WP_045193372.1|3208367_3210626_+|CRISPR-associated-helicase/endonuclease-Cas3
MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANEDFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQGVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGADALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPTMGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRILHSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQVLIIPFQGKPYEKENEDDGESELERCKEILKPLLDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAKPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQKQFSYGEPPLRIPVVPDSQIQYSSVRGGEWNLN
>NZ_CP006723.1|WP_000098772.1|3210627_3212511_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MSSRPSASIETTPNTPVVFQRGLSECTSPLLRAGLAGLYSTLYSLKDEKKPKTLSWELTQDSIQITSKGEFSKDFQWIINHGYQTKEGIFYCPGIHRSKTIHKDRMHFHNAMMGTFLQHGRIQVRTKGGGTAVSIEDECKLLYFPLLVEEKKIKYRKDAESILFAEKRGSTWSFENLVELSGYVMPGAPPRFTHETSWIGTIADAFLLFFAPLSCSFAEIEPSRGTWCILIPELEDLETFERFRRDYEVNTINMFAGGPGDAALRYLTEMDLTGNKKDFSPNGCEVYVIGKVAWNKKQQVRRLMMRIHPTEKNFRIYKKMRGIFQNKIHLKKTDASSKSKESRTRSTDKNKTQKKKDENYHWVSSPYAAARIAENLVQGKRWYYQFAKPLSWYIDTLERKRKSSPGSSHEKIWFESIRRFERAELIKFMENNEIWNSEEEQWFVKSFHETLSRLYAKEASHLNRRGGSRTLGDRWKHMNEKIYRDLAQAKTSPQIRTVISDLWAKSGRPPSLQEHTGALWKFISKDSEYARDLSLVALASYQGSSSLFRETVKDAVQKDEGRQLSLNLEKATTQEQVLKAYQTLWDFVETNDEEKNDLEVFVTKNWKRALEIGQEEIQKAKKKSNDA
>NZ_CP006723.1|WP_000052104.1|3212575_3213415_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSLHIFGTILTPHGVAANNRGENEGNLSTLQKLLWNGEVHSTVSGEAIRYALRETWMEDHENLLNRKIKSEGYDWQDETFKKPDRYLDDTILGFMDPKKETNKRRASLEITRAVSTRPWIGDVSFNVASVGAQRTNKNPIPYATEIHATRYQYSFALSGDDVKSEWKGLALDGLASLRRVAGNHSRFLYDFSPESIVLRVTHDPAPRILYCFREEGDTIDLKNLAKRVASGDVKAEELILGGEIASEQDAIELKTKGATVFPGIKAAVEDAKKRIGKSA
>NZ_CP006723.1|WP_000371342.1|3213435_3214059_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MDPLILYYEIPIASFRPYQSREYQDSYPVPPPSTLIGMSLSLCGLSMDHRKFFSSCEMCSAVADSNPARSTVLRRMRRLGDSGRDPKQRRPEYQELVTGIRGIVAYRGLPAELAKPMKTVLTTPEKIIRYGGLSLGESSFLVDVIRLFGLPDTTQSNWSWLIPDMKGSLDLPVWIDTISPSLTTKFRFSFQSAEGIPENAWFKLRPS
>NZ_CP006723.1|WP_001140541.1|3215189_3215618_+|hypothetical-protein
MAKTKNRRVVFLPIKPEFAHKIINGEKNIEFRKKFSSQEVETIVIYSSSPEKRVIGYATVDSIVIDTPDSLWKRFYKKGGIDKDRFSFYFNGKETGIGIRIKNVSRLKEAVTPTQLGIQGAIPQNFKFLEKGIITILERNLI
>NZ_CP006723.1|WP_000533550.1|3215610_3215793_-|hypothetical-protein
MGRRGKIATEHNASEILRDLSLPNFTFSAMILKKALKFLLSFVSRSLVSKANSNLVFFLK
>NZ_CP006723.1|WP_045192701.1|3215967_3217509_+|type-I-restriction-modification-system-subunit-M
MTSAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQYSKLNDKKITKEIKDDAIKTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSANGFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAIHKQTRINKIYDPACGSGSLLLQAKKQFDDHIIEEGFFGQEINHTTYNLARMNMFLHNINYDKFDIELGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALSYLSSKGRAAIVCFPGIFYRSGAEQKIRQYLVGNNFVETVISLAPNLFFGTTIAVNILVLSKHKTDTNTQFIDASGLFKKETNNNILTEDHIERIMQTFDSKVDTEHFAKSVSVETIANNDYNLSVSSYVEAKDNREVIDIQKLNAELKTTVEKIDQLRADIDAIVVEIEG
>NZ_CP006723.1|WP_061237873.1|3217505_3218729_+|restriction-endonuclease-subunit-S
MSKSFMEKLLKGTSVEWKTLGEVGDFIRGSGIQKSNFTESGTGCIHYGQIHTHYGTWADETKSFINPEFAARLRKAHTGNLVIATTSEDDDALAKAVAWLGDEEVAVSTDAYIYRHTINPKYMSYFFQTELFRSQKKPYITGTKVRRISGESLAKIQIPIPPLPAQEEIVRILDAFTELTTELTTELSARKKQYNYYRDQLLSFEEGEVEWKTLGDVAKKISSGGTPQTGVWEFYDGDIPWLRTQEINFEEIWDTGIKITEAGLKNSSAKWIPANCVIVAMYGATVGKIGINKIPMTTNQACANIELDENIANYQYVFHFLSSQYKYIKSLGSGPQTNINAQIVKKIQIPIPPLAEQERIVAILDKFDALTNSISEGLPREIELRQKQYEYYRELLLSFPKAEVGPT
>NZ_CP006723.1|WP_000061330.1|3218725_3219877_+|AAA-family-ATPase
MSMDIVKLLKDADQKVQLLYAFNGTGKTRLSREFKQLVAPKNNRDEADQAESSHNKILYYNASTEDLFFWDNDLEKDAEPKLKIQSNSFTDWILKDQGQDRNIITNFQHYTNEKLTPRFNEAYTVKDKNEQEVIVKEFSEVTFSLTRGNEEHSGNLKISKGEESNFIWSIFYSLLEQVISVLNVIDSSEQETDQFDQLEYVFIDDPVSSLDENHLIELAAELIQSSKSDIRFLITTHNPLFYNVLHNEFKKDTFKKYILKKQEDESYELANQSTDSPFSYHLHLKAELEKAIETGQLHKYHFNFLRNILEKTSTFVGLERWGDLLPKTEDGDPNPYEVRIINFSSHSKHSDNEVVEVPDEHRRVLSFLVKKLDEMYRLRMRTK
>NZ_CP006723.1|WP_000141542.1|3219894_3222993_+|type-I-restriction-endonuclease-subunit-R
MTEYKTIAESNHFIVLDKYTREWQVSESYQSEADLEKELVQDLKNQGYEFRTDISTPEKMLANVRERLQALNAMQFSEGEWLRFVETWLDKPSDTVIDKTRKIHDDYIHDFVFDDGHIQNIYLLDKKNIARNKVEVIRQFEQAGTHSNRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYSKESFNSEHSLFKYLQLFVISNGTDSRYFANTTHRNKNSFDFTMNWAKADNSLMKDLKDFTATFFQKNTLLNVLLTYSVFDVSDTLLVMRPYQIAATERILWKIKSSFGTKNWSKPESGGYIWHTTGSGKTLTSFKAARLSTELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSDSTAGLKRNLEMDDNKIIVTTIQKLNNLIKSESDLSIYNKQVVFIFDEAHRSQFGEAQKNLRKKFKKFYQFGFTGTPIFPQNALGADTTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPKFKEIETEQDEKKLTAAENKQALLHEERIREISQYILNQFKQKTHRLQPSSKGFNAMFAVSSVDAAKLYYESFKEVQKDQDKPLKVATIFSFSANEEQDAVGEIQDESFEVSAMESTAKEFLSAAINDYNIMFQTNFGVDSNSFQNYYRDLAKKVKDREIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLLQAYSRTNRIYDATKTFGNIITFRDLEKATIEAITLYGDKNTKNVVLEKSYKEYMEGFTDLATGEARRGYVDVVAELQQRFPKPEEIEKESDKKAFVKLFGEYLRVENVLQNYDEFTSLKALQSVDMNNQEAVEEFKAKHYVSDEGLAALQKIQVPAERKIQDYRSTYNDIRDWLRRQKSGDEKVKPRIDWDDVVFEVDLLKSQEINLDYILELIFEHNKKVKNKSILIEDIRRVIRASIGNRAKESLMIDFINQTDLDQISDKASVIDAFFSFAQTEQKREADELIQTENLNAEAAKRYITSSLRREFASENGTELNTILPKMSPLHPQYLTIKQSVFQKVSAFVEKFKGVGGQI

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Crispr_ID: NZ_CP006723_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_15

3206638-3206887

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CRISPRCasFinder

3 spacers

cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

The CRISPR arrays of NZ_CP006723_15

>merge|NZ_CP006723|15|3206638-3206887|CRISPRCasFinder
ACTTACAAAAATCGGGTGCCGGTAGGCGTTGAGCACTCAAACAAGGCGGGAGGCGGCGGAGGGATTTTACTCTGAATATAACTTTGATGCCGATAGGCGTTGAGCACCCTCAAAAATCACATGAGAATATTTCAATATTCTATCTGAATATAACTTTGATGCCGGTAGGCGTTGAGCACACAATAAAATACGGGACAATTGAATTCTATAGCGCCTGAATATAACTTTGATGCCGTTAGGCGATTTAGAC

>NZ_CP006723|15|15|3206638-3206887|CRISPRCasFinder
ACTTACAAAAATCGGGTGCCGGTAGGCGTTGAGCAC	TCAAACAAGGCGGGAGGCGGCGGAGGGATTTTACT
CTGAATATAACTTTGATGCCGATAGGCGTTGAGCAC	CCTCAAAAATCACATGAGAATATTTCAATATTCTAT
CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC	ACAATAAAATACGGGACAATTGAATTCTATAGCGC
CTGAATATAACTTTGATGCCGTTAGGCGATTTAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP006723.1\|WP_001110344.1\|3196639_3197191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227269
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|131635
NZ_CP006723.1\|WP_025180030.1\|3198103_3198316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000533550.1\|3215610_3215793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|372509
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NZ_CP006723.1\|WP_000110275.1\|3202693_3202897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001072142.1\|3197533_3197920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379539
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	8.42665e-19
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	gnl\|CDD\|227269	COG4933, COG4933, Uncharacterized conserved protein [Function unknown].	3.39436e-15
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.93443e-108
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|131635	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.	1.44797e-102
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	5.92572e-10
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	6.53749e-45
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	gnl\|CDD\|372509	pfam13166, AAA_13, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.	1.04046e-06
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.59841e-135
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.43706e-156
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.32745e-84
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	6.55101e-165
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	0.00101694
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0

>NZ_CP006723.1|WP_000110275.1|3202693_3202897_-|hypothetical-protein
MSVFKGGEQVYRFLSLFFMFGFFRSAYFVSKDHFVSNIKIQVCLSSSPIINLAGIFTRKKNERWAIN
>NZ_CP006723.1|WP_000683530.1|3202288_3202573_+|CRISPR-associated-endonuclease-Cas2
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEKKSAWPEAPKTLKIL
>NZ_CP006723.1|WP_002063811.1|3200663_3202289_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MGIHSLLYCERLFYLEEVEGILVADDRVYAGRTLHEELEPNEDSSGRIESFHYTSEKLEVSGKVDRIQKRDGDWIPYEHKRGRARIGTNGPEAWESDQCQVTVYALLLEEATGRNISEGKIRYHGSKDLVKIEIDEELRSKALKTIDRAKELSTSTNRPPVAQNENLCKNCSLAPVCLPEETRVITENEYEPIRLFPEKREKTTLHVFGHDSRIKKSDNVLLVEKVTETGEKSKSEKIPIQEIESVNIHGNCQISSQMIKFLVSEEIPVHWFSGGGNYIGGININPSGVQRRIRQFKALTKETIRLNLAKKLVSAKCESQLRYLLRATRGKDETRNETESYLATIRSGLKNIESADSPSQLLGIEGSSARAYFSGLPALLKNSDPFLVPNGRSKRPPKDPFNATLSFLYSLLYKSVRQAIIAVGLDPSFGFYHTPRSSAEPLVLDLMELFRVSLCDMTLIGSINRKSWIDEDFEITKNKVWLSESGRKKATQLYETRLDDTWKHPVVNYSLSYYRMIELEVRLLEKEWSGEANIFAQARLR
>NZ_CP006723.1|WP_082267386.1|3199975_3200185_+|hypothetical-protein
MGPLQSNLHLNTTSKLRIRAEQPLLSHRLKLAGKNLEVSQDKIQLGIPIIGLLKPHKTLYSRLIGSANI
>NZ_CP006723.1|WP_000578383.1|3198577_3199453_+|hypothetical-protein
MIFVLEYCLENPKSIFLVIPKDFETVREKFPFLKRKVIATYFGFHPSSLNVLEKITDSAVQNGYLKTFQNLYSIPVFQKAFHHLPIINEFIIQFFNYSRAKNWNEKWDILFLKDLLFRFPNPNFEEEDFERTFQLYEEVKRFSPSWKIRSLEHLKDLEQKMIQKIQKNEFIGPDQPYPTPPMEKEDWLEPINSRKELFLESRIQHNCIFSYDTRILEGKYYIYRIFFPERCTLSLFYINGDWYLDQIAAAFNKEAKAETLRKVEKWRMQNGIFVLGDAFRLGIPPDWIFAR
>NZ_CP006723.1|WP_025180030.1|3198103_3198316_-|hypothetical-protein
MEVAFSKAGQPVRFRMLKYSLMFSLLYLLRDSEYLWSVLISAFFISLTVHLWFGYRTKFWTTALGNINKL
>NZ_CP006723.1|WP_001072142.1|3197533_3197920_+|hypothetical-protein
MNQKIFKSIWAIIAGFLTIFILSTAVDLILHQTGIYPPMGVIMSDELFTLATAYRVLFGILSGYVTAKIAPDQPVKHSLALGVLGLIVSITGAIVMWDAGPAWYSLAIIAIALPCSWAGGILYERSQT
>NZ_CP006723.1|WP_001110344.1|3196639_3197191_+|hypothetical-protein
MNYYILEEVNYHLNIPYIGDLPEELDTIDVMTGRKIEISNLPIRVPIKIDYESEIVYPDIMTADLPLFSEKIRNSLDQIEIKNIQYYPVELFEDQTGQTKANYYMSILPVSVECLKSGINRSPAGRLILKNPIIDPTKILGLKLFRLGEEPSLIIIDSMVKDTLTNAHLNGVSFIPLEEYTSS
>NZ_CP006723.1|WP_045192693.1|3194039_3195536_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIKISGLNKAFTTKVLFDDLNLSINRGEKVGLVGRNGHGKSTLFQVILGNVEADSGTISIPKGYKIGHLQQHLHFTKPTVLEECSLGLPEGEEYETWKVEKILSGLGFSEQDMEKNPNEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEEFLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEIFIAKFKAKASFASRAQSRVKKLEKQGEMKELEKIQDLELYFNSAPFNANQMLSAENLSFSYDGKEPFLIENFSISVGSRERICIIGKNGKGKSTLLKILAGELETSQGTIKKHPVLKEGYFGQTNKLNLNENSTVVEEIMISDPSCNEWKARTIAGGLMFSEDQALKKIKVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFDGSVIMVTHDELHLRAVATKLIVFDNDSIQIFNGSYDDFLNDVGWSNEYY
>NZ_CP006723.1|WP_001060167.1|3192837_3193674_+|aldo/keto-reductase
MNNKENPLKQTIMLNNGISMPILGLGVWKTKSGKECKEAVLNALEAGYRHIDTARIYDNEVDVGQAIRESGIPRKEIFITTKLWNADQGSDKTRKALENSLDRLGIDFVDLYLIHFPVTSKRMDSWKELEKLYHDKLCKAIGVSNYTIIHLTELLKNSQITPAVNQVEFHPFLNQIYLLEYCKKHKIQLEAYSPLAHGQKIEDPTIAKIAQKYDKTPAQILIRWAIEQKIVVIPKSIKKERIIENSKVFDFAISEEDMKILNSLDEDFRTCWDPSEVV
>NZ_CP006723.1|WP_045193372.1|3208367_3210626_+|CRISPR-associated-helicase/endonuclease-Cas3
MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANEDFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQGVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGADALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPTMGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRILHSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQVLIIPFQGKPYEKENEDDGESELERCKEILKPLLDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAKPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQKQFSYGEPPLRIPVVPDSQIQYSSVRGGEWNLN
>NZ_CP006723.1|WP_000098772.1|3210627_3212511_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MSSRPSASIETTPNTPVVFQRGLSECTSPLLRAGLAGLYSTLYSLKDEKKPKTLSWELTQDSIQITSKGEFSKDFQWIINHGYQTKEGIFYCPGIHRSKTIHKDRMHFHNAMMGTFLQHGRIQVRTKGGGTAVSIEDECKLLYFPLLVEEKKIKYRKDAESILFAEKRGSTWSFENLVELSGYVMPGAPPRFTHETSWIGTIADAFLLFFAPLSCSFAEIEPSRGTWCILIPELEDLETFERFRRDYEVNTINMFAGGPGDAALRYLTEMDLTGNKKDFSPNGCEVYVIGKVAWNKKQQVRRLMMRIHPTEKNFRIYKKMRGIFQNKIHLKKTDASSKSKESRTRSTDKNKTQKKKDENYHWVSSPYAAARIAENLVQGKRWYYQFAKPLSWYIDTLERKRKSSPGSSHEKIWFESIRRFERAELIKFMENNEIWNSEEEQWFVKSFHETLSRLYAKEASHLNRRGGSRTLGDRWKHMNEKIYRDLAQAKTSPQIRTVISDLWAKSGRPPSLQEHTGALWKFISKDSEYARDLSLVALASYQGSSSLFRETVKDAVQKDEGRQLSLNLEKATTQEQVLKAYQTLWDFVETNDEEKNDLEVFVTKNWKRALEIGQEEIQKAKKKSNDA
>NZ_CP006723.1|WP_000052104.1|3212575_3213415_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSLHIFGTILTPHGVAANNRGENEGNLSTLQKLLWNGEVHSTVSGEAIRYALRETWMEDHENLLNRKIKSEGYDWQDETFKKPDRYLDDTILGFMDPKKETNKRRASLEITRAVSTRPWIGDVSFNVASVGAQRTNKNPIPYATEIHATRYQYSFALSGDDVKSEWKGLALDGLASLRRVAGNHSRFLYDFSPESIVLRVTHDPAPRILYCFREEGDTIDLKNLAKRVASGDVKAEELILGGEIASEQDAIELKTKGATVFPGIKAAVEDAKKRIGKSA
>NZ_CP006723.1|WP_000371342.1|3213435_3214059_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MDPLILYYEIPIASFRPYQSREYQDSYPVPPPSTLIGMSLSLCGLSMDHRKFFSSCEMCSAVADSNPARSTVLRRMRRLGDSGRDPKQRRPEYQELVTGIRGIVAYRGLPAELAKPMKTVLTTPEKIIRYGGLSLGESSFLVDVIRLFGLPDTTQSNWSWLIPDMKGSLDLPVWIDTISPSLTTKFRFSFQSAEGIPENAWFKLRPS
>NZ_CP006723.1|WP_001140541.1|3215189_3215618_+|hypothetical-protein
MAKTKNRRVVFLPIKPEFAHKIINGEKNIEFRKKFSSQEVETIVIYSSSPEKRVIGYATVDSIVIDTPDSLWKRFYKKGGIDKDRFSFYFNGKETGIGIRIKNVSRLKEAVTPTQLGIQGAIPQNFKFLEKGIITILERNLI
>NZ_CP006723.1|WP_000533550.1|3215610_3215793_-|hypothetical-protein
MGRRGKIATEHNASEILRDLSLPNFTFSAMILKKALKFLLSFVSRSLVSKANSNLVFFLK
>NZ_CP006723.1|WP_045192701.1|3215967_3217509_+|type-I-restriction-modification-system-subunit-M
MTSAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQYSKLNDKKITKEIKDDAIKTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSANGFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAIHKQTRINKIYDPACGSGSLLLQAKKQFDDHIIEEGFFGQEINHTTYNLARMNMFLHNINYDKFDIELGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALSYLSSKGRAAIVCFPGIFYRSGAEQKIRQYLVGNNFVETVISLAPNLFFGTTIAVNILVLSKHKTDTNTQFIDASGLFKKETNNNILTEDHIERIMQTFDSKVDTEHFAKSVSVETIANNDYNLSVSSYVEAKDNREVIDIQKLNAELKTTVEKIDQLRADIDAIVVEIEG
>NZ_CP006723.1|WP_061237873.1|3217505_3218729_+|restriction-endonuclease-subunit-S
MSKSFMEKLLKGTSVEWKTLGEVGDFIRGSGIQKSNFTESGTGCIHYGQIHTHYGTWADETKSFINPEFAARLRKAHTGNLVIATTSEDDDALAKAVAWLGDEEVAVSTDAYIYRHTINPKYMSYFFQTELFRSQKKPYITGTKVRRISGESLAKIQIPIPPLPAQEEIVRILDAFTELTTELTTELSARKKQYNYYRDQLLSFEEGEVEWKTLGDVAKKISSGGTPQTGVWEFYDGDIPWLRTQEINFEEIWDTGIKITEAGLKNSSAKWIPANCVIVAMYGATVGKIGINKIPMTTNQACANIELDENIANYQYVFHFLSSQYKYIKSLGSGPQTNINAQIVKKIQIPIPPLAEQERIVAILDKFDALTNSISEGLPREIELRQKQYEYYRELLLSFPKAEVGPT
>NZ_CP006723.1|WP_000061330.1|3218725_3219877_+|AAA-family-ATPase
MSMDIVKLLKDADQKVQLLYAFNGTGKTRLSREFKQLVAPKNNRDEADQAESSHNKILYYNASTEDLFFWDNDLEKDAEPKLKIQSNSFTDWILKDQGQDRNIITNFQHYTNEKLTPRFNEAYTVKDKNEQEVIVKEFSEVTFSLTRGNEEHSGNLKISKGEESNFIWSIFYSLLEQVISVLNVIDSSEQETDQFDQLEYVFIDDPVSSLDENHLIELAAELIQSSKSDIRFLITTHNPLFYNVLHNEFKKDTFKKYILKKQEDESYELANQSTDSPFSYHLHLKAELEKAIETGQLHKYHFNFLRNILEKTSTFVGLERWGDLLPKTEDGDPNPYEVRIINFSSHSKHSDNEVVEVPDEHRRVLSFLVKKLDEMYRLRMRTK
>NZ_CP006723.1|WP_000141542.1|3219894_3222993_+|type-I-restriction-endonuclease-subunit-R
MTEYKTIAESNHFIVLDKYTREWQVSESYQSEADLEKELVQDLKNQGYEFRTDISTPEKMLANVRERLQALNAMQFSEGEWLRFVETWLDKPSDTVIDKTRKIHDDYIHDFVFDDGHIQNIYLLDKKNIARNKVEVIRQFEQAGTHSNRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYSKESFNSEHSLFKYLQLFVISNGTDSRYFANTTHRNKNSFDFTMNWAKADNSLMKDLKDFTATFFQKNTLLNVLLTYSVFDVSDTLLVMRPYQIAATERILWKIKSSFGTKNWSKPESGGYIWHTTGSGKTLTSFKAARLSTELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSDSTAGLKRNLEMDDNKIIVTTIQKLNNLIKSESDLSIYNKQVVFIFDEAHRSQFGEAQKNLRKKFKKFYQFGFTGTPIFPQNALGADTTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPKFKEIETEQDEKKLTAAENKQALLHEERIREISQYILNQFKQKTHRLQPSSKGFNAMFAVSSVDAAKLYYESFKEVQKDQDKPLKVATIFSFSANEEQDAVGEIQDESFEVSAMESTAKEFLSAAINDYNIMFQTNFGVDSNSFQNYYRDLAKKVKDREIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLLQAYSRTNRIYDATKTFGNIITFRDLEKATIEAITLYGDKNTKNVVLEKSYKEYMEGFTDLATGEARRGYVDVVAELQQRFPKPEEIEKESDKKAFVKLFGEYLRVENVLQNYDEFTSLKALQSVDMNNQEAVEEFKAKHYVSDEGLAALQKIQVPAERKIQDYRSTYNDIRDWLRRQKSGDEKVKPRIDWDDVVFEVDLLKSQEINLDYILELIFEHNKKVKNKSILIEDIRRVIRASIGNRAKESLMIDFINQTDLDQISDKASVIDAFFSFAQTEQKREADELIQTENLNAEAAKRYITSSLRREFASENGTELNTILPKMSPLHPQYLTIKQSVFQKVSAFVEKFKGVGGQI

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Crispr_ID: NZ_CP006723_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_14

3206161-3206482

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	CRISPRCasFinder
CTGAATATAACTTTGATGCCGNTAGGCGTTGAGCAC	CRT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	PILER-CR

4 spacers

cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

The CRISPR arrays of NZ_CP006723_14

>merge|NZ_CP006723|14|3206161-3206482|CRISPRCasFinder,CRT,PILER-CR
CTTACAAAAATCAGGATGCCGGTAGGCGTTGAGCACTTGATCACGACCGGGACTTTGATTGCTGTAGCTATCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACATACCACGTCTACCGCAATCTCTAAAAACTTCGCACTGAATATAACTTTGATGTCGTTAGGCGTTGAGCACTCTTCAAGAACGAGATACATTGCGGTAAGAGAGGCCTGAATATAACTTTGATGCCGATAGGCGTTGAGCACGCCCAGTGATAAGGTCGGACGCCGTGAATACACCGGCTGAATATAACTTTGATGCCGTTAGGCGATTTAGACG

>NZ_CP006723|14|14|3206161-3206482|CRISPRCasFinder
CTTACAAAAATCAGGATGCCGGTAGGCGTTGAGCAC	TTGATCACGACCGGGACTTTGATTGCTGTAGCTAT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	ATACCACGTCTACCGCAATCTCTAAAAACTTCGCA
CTGAATATAACTTTGATGTCGTTAGGCGTTGAGCAC	TCTTCAAGAACGAGATACATTGCGGTAAGAGAGGC
CTGAATATAACTTTGATGCCGATAGGCGTTGAGCAC	GCCCAGTGATAAGGTCGGACGCCGTGAATACACCGG
CTGAATATAACTTTGATGCCGTTAGGCGATTTAGACG

>NZ_CP006723|14|2|3206161-3206481|CRT
CTTACAAAAATCAGGATGCCGGTAGGCGTTGAGCAC	TTGATCACGACCGGGACTTTGATTGCTGTAGCTAT
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	ATACCACGTCTACCGCAATCTCTAAAAACTTCGCA
CTGAATATAACTTTGATGTCGTTAGGCGTTGAGCAC	TCTTCAAGAACGAGATACATTGCGGTAAGAGAGGC
CTGAATATAACTTTGATGCCGATAGGCGTTGAGCAC	GCCCAGTGATAAGGTCGGACGCCGTGAATACACCGG
CTGAATATAACTTTGATGCCGTTAGGCGATTTAGAC

>NZ_CP006723|14|4|3206232-3206409|PILER-CR
CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	ATACCACGTCTACCGCAATCTCTAAAAACTTCGCA
CTGAATATAACTTTGATGTCGTTAGGCGTTGAGCAC	TCTTCAAGAACGAGATACATTGCGGTAAGAGAGGC
CTGAATATAACTTTGATGCCGATAGGCGTTGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP006723.1\|WP_001110344.1\|3196639_3197191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227269
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|131635
NZ_CP006723.1\|WP_025180030.1\|3198103_3198316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000533550.1\|3215610_3215793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|372509
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NZ_CP006723.1\|WP_000110275.1\|3202693_3202897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001072142.1\|3197533_3197920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379539
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000683530.1\|3202288_3202573_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	8.42665e-19
NZ_CP006723.1\|WP_000141542.1\|3219894_3222993_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP006723.1\|WP_001140541.1\|3215189_3215618_+\|hypothetical-protein	gnl\|CDD\|227269	COG4933, COG4933, Uncharacterized conserved protein [Function unknown].	3.39436e-15
NZ_CP006723.1\|WP_061237873.1\|3217505_3218729_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.93443e-108
NZ_CP006723.1\|WP_000371342.1\|3213435_3214059_+\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|131635	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.	1.44797e-102
NZ_CP006723.1\|WP_002063811.1\|3200663_3202289_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_CP006723.1\|WP_082267386.1\|3199975_3200185_+\|hypothetical-protein	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	5.92572e-10
NZ_CP006723.1\|WP_045193372.1\|3208367_3210626_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	6.53749e-45
NZ_CP006723.1\|WP_000061330.1\|3218725_3219877_+\|AAA-family-ATPase	gnl\|CDD\|372509	pfam13166, AAA_13, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.	1.04046e-06
NZ_CP006723.1\|WP_001060167.1\|3192837_3193674_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.59841e-135
NZ_CP006723.1\|WP_045192693.1\|3194039_3195536_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.43706e-156
NZ_CP006723.1\|WP_000052104.1\|3212575_3213415_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.32745e-84
NZ_CP006723.1\|WP_000098772.1\|3210627_3212511_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	6.55101e-165
NZ_CP006723.1\|WP_000578383.1\|3198577_3199453_+\|hypothetical-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	0.00101694
NZ_CP006723.1\|WP_045192701.1\|3215967_3217509_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0

>NZ_CP006723.1|WP_000110275.1|3202693_3202897_-|hypothetical-protein
MSVFKGGEQVYRFLSLFFMFGFFRSAYFVSKDHFVSNIKIQVCLSSSPIINLAGIFTRKKNERWAIN
>NZ_CP006723.1|WP_000683530.1|3202288_3202573_+|CRISPR-associated-endonuclease-Cas2
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEKKSAWPEAPKTLKIL
>NZ_CP006723.1|WP_002063811.1|3200663_3202289_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MGIHSLLYCERLFYLEEVEGILVADDRVYAGRTLHEELEPNEDSSGRIESFHYTSEKLEVSGKVDRIQKRDGDWIPYEHKRGRARIGTNGPEAWESDQCQVTVYALLLEEATGRNISEGKIRYHGSKDLVKIEIDEELRSKALKTIDRAKELSTSTNRPPVAQNENLCKNCSLAPVCLPEETRVITENEYEPIRLFPEKREKTTLHVFGHDSRIKKSDNVLLVEKVTETGEKSKSEKIPIQEIESVNIHGNCQISSQMIKFLVSEEIPVHWFSGGGNYIGGININPSGVQRRIRQFKALTKETIRLNLAKKLVSAKCESQLRYLLRATRGKDETRNETESYLATIRSGLKNIESADSPSQLLGIEGSSARAYFSGLPALLKNSDPFLVPNGRSKRPPKDPFNATLSFLYSLLYKSVRQAIIAVGLDPSFGFYHTPRSSAEPLVLDLMELFRVSLCDMTLIGSINRKSWIDEDFEITKNKVWLSESGRKKATQLYETRLDDTWKHPVVNYSLSYYRMIELEVRLLEKEWSGEANIFAQARLR
>NZ_CP006723.1|WP_082267386.1|3199975_3200185_+|hypothetical-protein
MGPLQSNLHLNTTSKLRIRAEQPLLSHRLKLAGKNLEVSQDKIQLGIPIIGLLKPHKTLYSRLIGSANI
>NZ_CP006723.1|WP_000578383.1|3198577_3199453_+|hypothetical-protein
MIFVLEYCLENPKSIFLVIPKDFETVREKFPFLKRKVIATYFGFHPSSLNVLEKITDSAVQNGYLKTFQNLYSIPVFQKAFHHLPIINEFIIQFFNYSRAKNWNEKWDILFLKDLLFRFPNPNFEEEDFERTFQLYEEVKRFSPSWKIRSLEHLKDLEQKMIQKIQKNEFIGPDQPYPTPPMEKEDWLEPINSRKELFLESRIQHNCIFSYDTRILEGKYYIYRIFFPERCTLSLFYINGDWYLDQIAAAFNKEAKAETLRKVEKWRMQNGIFVLGDAFRLGIPPDWIFAR
>NZ_CP006723.1|WP_025180030.1|3198103_3198316_-|hypothetical-protein
MEVAFSKAGQPVRFRMLKYSLMFSLLYLLRDSEYLWSVLISAFFISLTVHLWFGYRTKFWTTALGNINKL
>NZ_CP006723.1|WP_001072142.1|3197533_3197920_+|hypothetical-protein
MNQKIFKSIWAIIAGFLTIFILSTAVDLILHQTGIYPPMGVIMSDELFTLATAYRVLFGILSGYVTAKIAPDQPVKHSLALGVLGLIVSITGAIVMWDAGPAWYSLAIIAIALPCSWAGGILYERSQT
>NZ_CP006723.1|WP_001110344.1|3196639_3197191_+|hypothetical-protein
MNYYILEEVNYHLNIPYIGDLPEELDTIDVMTGRKIEISNLPIRVPIKIDYESEIVYPDIMTADLPLFSEKIRNSLDQIEIKNIQYYPVELFEDQTGQTKANYYMSILPVSVECLKSGINRSPAGRLILKNPIIDPTKILGLKLFRLGEEPSLIIIDSMVKDTLTNAHLNGVSFIPLEEYTSS
>NZ_CP006723.1|WP_045192693.1|3194039_3195536_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MIKISGLNKAFTTKVLFDDLNLSINRGEKVGLVGRNGHGKSTLFQVILGNVEADSGTISIPKGYKIGHLQQHLHFTKPTVLEECSLGLPEGEEYETWKVEKILSGLGFSEQDMEKNPNEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEEFLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEIFIAKFKAKASFASRAQSRVKKLEKQGEMKELEKIQDLELYFNSAPFNANQMLSAENLSFSYDGKEPFLIENFSISVGSRERICIIGKNGKGKSTLLKILAGELETSQGTIKKHPVLKEGYFGQTNKLNLNENSTVVEEIMISDPSCNEWKARTIAGGLMFSEDQALKKIKVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFDGSVIMVTHDELHLRAVATKLIVFDNDSIQIFNGSYDDFLNDVGWSNEYY
>NZ_CP006723.1|WP_001060167.1|3192837_3193674_+|aldo/keto-reductase
MNNKENPLKQTIMLNNGISMPILGLGVWKTKSGKECKEAVLNALEAGYRHIDTARIYDNEVDVGQAIRESGIPRKEIFITTKLWNADQGSDKTRKALENSLDRLGIDFVDLYLIHFPVTSKRMDSWKELEKLYHDKLCKAIGVSNYTIIHLTELLKNSQITPAVNQVEFHPFLNQIYLLEYCKKHKIQLEAYSPLAHGQKIEDPTIAKIAQKYDKTPAQILIRWAIEQKIVVIPKSIKKERIIENSKVFDFAISEEDMKILNSLDEDFRTCWDPSEVV
>NZ_CP006723.1|WP_045193372.1|3208367_3210626_+|CRISPR-associated-helicase/endonuclease-Cas3
MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANEDFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQGVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGADALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPTMGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRILHSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQVLIIPFQGKPYEKENEDDGESELERCKEILKPLLDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAKPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQKQFSYGEPPLRIPVVPDSQIQYSSVRGGEWNLN
>NZ_CP006723.1|WP_000098772.1|3210627_3212511_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MSSRPSASIETTPNTPVVFQRGLSECTSPLLRAGLAGLYSTLYSLKDEKKPKTLSWELTQDSIQITSKGEFSKDFQWIINHGYQTKEGIFYCPGIHRSKTIHKDRMHFHNAMMGTFLQHGRIQVRTKGGGTAVSIEDECKLLYFPLLVEEKKIKYRKDAESILFAEKRGSTWSFENLVELSGYVMPGAPPRFTHETSWIGTIADAFLLFFAPLSCSFAEIEPSRGTWCILIPELEDLETFERFRRDYEVNTINMFAGGPGDAALRYLTEMDLTGNKKDFSPNGCEVYVIGKVAWNKKQQVRRLMMRIHPTEKNFRIYKKMRGIFQNKIHLKKTDASSKSKESRTRSTDKNKTQKKKDENYHWVSSPYAAARIAENLVQGKRWYYQFAKPLSWYIDTLERKRKSSPGSSHEKIWFESIRRFERAELIKFMENNEIWNSEEEQWFVKSFHETLSRLYAKEASHLNRRGGSRTLGDRWKHMNEKIYRDLAQAKTSPQIRTVISDLWAKSGRPPSLQEHTGALWKFISKDSEYARDLSLVALASYQGSSSLFRETVKDAVQKDEGRQLSLNLEKATTQEQVLKAYQTLWDFVETNDEEKNDLEVFVTKNWKRALEIGQEEIQKAKKKSNDA
>NZ_CP006723.1|WP_000052104.1|3212575_3213415_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSLHIFGTILTPHGVAANNRGENEGNLSTLQKLLWNGEVHSTVSGEAIRYALRETWMEDHENLLNRKIKSEGYDWQDETFKKPDRYLDDTILGFMDPKKETNKRRASLEITRAVSTRPWIGDVSFNVASVGAQRTNKNPIPYATEIHATRYQYSFALSGDDVKSEWKGLALDGLASLRRVAGNHSRFLYDFSPESIVLRVTHDPAPRILYCFREEGDTIDLKNLAKRVASGDVKAEELILGGEIASEQDAIELKTKGATVFPGIKAAVEDAKKRIGKSA
>NZ_CP006723.1|WP_000371342.1|3213435_3214059_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MDPLILYYEIPIASFRPYQSREYQDSYPVPPPSTLIGMSLSLCGLSMDHRKFFSSCEMCSAVADSNPARSTVLRRMRRLGDSGRDPKQRRPEYQELVTGIRGIVAYRGLPAELAKPMKTVLTTPEKIIRYGGLSLGESSFLVDVIRLFGLPDTTQSNWSWLIPDMKGSLDLPVWIDTISPSLTTKFRFSFQSAEGIPENAWFKLRPS
>NZ_CP006723.1|WP_001140541.1|3215189_3215618_+|hypothetical-protein
MAKTKNRRVVFLPIKPEFAHKIINGEKNIEFRKKFSSQEVETIVIYSSSPEKRVIGYATVDSIVIDTPDSLWKRFYKKGGIDKDRFSFYFNGKETGIGIRIKNVSRLKEAVTPTQLGIQGAIPQNFKFLEKGIITILERNLI
>NZ_CP006723.1|WP_000533550.1|3215610_3215793_-|hypothetical-protein
MGRRGKIATEHNASEILRDLSLPNFTFSAMILKKALKFLLSFVSRSLVSKANSNLVFFLK
>NZ_CP006723.1|WP_045192701.1|3215967_3217509_+|type-I-restriction-modification-system-subunit-M
MTSAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQYSKLNDKKITKEIKDDAIKTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSANGFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAIHKQTRINKIYDPACGSGSLLLQAKKQFDDHIIEEGFFGQEINHTTYNLARMNMFLHNINYDKFDIELGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALSYLSSKGRAAIVCFPGIFYRSGAEQKIRQYLVGNNFVETVISLAPNLFFGTTIAVNILVLSKHKTDTNTQFIDASGLFKKETNNNILTEDHIERIMQTFDSKVDTEHFAKSVSVETIANNDYNLSVSSYVEAKDNREVIDIQKLNAELKTTVEKIDQLRADIDAIVVEIEG
>NZ_CP006723.1|WP_061237873.1|3217505_3218729_+|restriction-endonuclease-subunit-S
MSKSFMEKLLKGTSVEWKTLGEVGDFIRGSGIQKSNFTESGTGCIHYGQIHTHYGTWADETKSFINPEFAARLRKAHTGNLVIATTSEDDDALAKAVAWLGDEEVAVSTDAYIYRHTINPKYMSYFFQTELFRSQKKPYITGTKVRRISGESLAKIQIPIPPLPAQEEIVRILDAFTELTTELTTELSARKKQYNYYRDQLLSFEEGEVEWKTLGDVAKKISSGGTPQTGVWEFYDGDIPWLRTQEINFEEIWDTGIKITEAGLKNSSAKWIPANCVIVAMYGATVGKIGINKIPMTTNQACANIELDENIANYQYVFHFLSSQYKYIKSLGSGPQTNINAQIVKKIQIPIPPLAEQERIVAILDKFDALTNSISEGLPREIELRQKQYEYYRELLLSFPKAEVGPT
>NZ_CP006723.1|WP_000061330.1|3218725_3219877_+|AAA-family-ATPase
MSMDIVKLLKDADQKVQLLYAFNGTGKTRLSREFKQLVAPKNNRDEADQAESSHNKILYYNASTEDLFFWDNDLEKDAEPKLKIQSNSFTDWILKDQGQDRNIITNFQHYTNEKLTPRFNEAYTVKDKNEQEVIVKEFSEVTFSLTRGNEEHSGNLKISKGEESNFIWSIFYSLLEQVISVLNVIDSSEQETDQFDQLEYVFIDDPVSSLDENHLIELAAELIQSSKSDIRFLITTHNPLFYNVLHNEFKKDTFKKYILKKQEDESYELANQSTDSPFSYHLHLKAELEKAIETGQLHKYHFNFLRNILEKTSTFVGLERWGDLLPKTEDGDPNPYEVRIINFSSHSKHSDNEVVEVPDEHRRVLSFLVKKLDEMYRLRMRTK
>NZ_CP006723.1|WP_000141542.1|3219894_3222993_+|type-I-restriction-endonuclease-subunit-R
MTEYKTIAESNHFIVLDKYTREWQVSESYQSEADLEKELVQDLKNQGYEFRTDISTPEKMLANVRERLQALNAMQFSEGEWLRFVETWLDKPSDTVIDKTRKIHDDYIHDFVFDDGHIQNIYLLDKKNIARNKVEVIRQFEQAGTHSNRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYSKESFNSEHSLFKYLQLFVISNGTDSRYFANTTHRNKNSFDFTMNWAKADNSLMKDLKDFTATFFQKNTLLNVLLTYSVFDVSDTLLVMRPYQIAATERILWKIKSSFGTKNWSKPESGGYIWHTTGSGKTLTSFKAARLSTELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSDSTAGLKRNLEMDDNKIIVTTIQKLNNLIKSESDLSIYNKQVVFIFDEAHRSQFGEAQKNLRKKFKKFYQFGFTGTPIFPQNALGADTTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPKFKEIETEQDEKKLTAAENKQALLHEERIREISQYILNQFKQKTHRLQPSSKGFNAMFAVSSVDAAKLYYESFKEVQKDQDKPLKVATIFSFSANEEQDAVGEIQDESFEVSAMESTAKEFLSAAINDYNIMFQTNFGVDSNSFQNYYRDLAKKVKDREIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLLQAYSRTNRIYDATKTFGNIITFRDLEKATIEAITLYGDKNTKNVVLEKSYKEYMEGFTDLATGEARRGYVDVVAELQQRFPKPEEIEKESDKKAFVKLFGEYLRVENVLQNYDEFTSLKALQSVDMNNQEAVEEFKAKHYVSDEGLAALQKIQVPAERKIQDYRSTYNDIRDWLRRQKSGDEKVKPRIDWDDVVFEVDLLKSQEINLDYILELIFEHNKKVKNKSILIEDIRRVIRASIGNRAKESLMIDFINQTDLDQISDKASVIDAFFSFAQTEQKREADELIQTENLNAEAAKRYITSSLRREFASENGTELNTILPKMSPLHPQYLTIKQSVFQKVSAFVEKFKGVGGQI

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Crispr_ID: NZ_CP006723_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_16

3414470-3414565

Orphan

Consensus_repeat	Method
AGGAAAGCGTTGTGTTGAGTTTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006723_16

>merge|NZ_CP006723|16|3414470-3414565|CRISPRCasFinder
AGGAAAGCGTTGTGTTGAGTTTTCCAACGCGACCTGCAGAGCGACCCTTAGGGAGCGATGCATTGAGTTTGAGGAAAGCGTTGTGTTGAGTTTTCC

>NZ_CP006723|16|16|3414470-3414565|CRISPRCasFinder
AGGAAAGCGTTGTGTTGAGTTTTCC	AACGCGACCTGCAGAGCGACCCTTAGGGAGCGATGCATTGAGTTTG
AGGAAAGCGTTGTGTTGAGTTTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_002109690.1\|3408585_3408726_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_154213701.1\|3409065_3409209_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001109427.1\|3415077_3416349_-\|membrane-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP006723.1\|WP_002069455.1\|3417889_3420556_+\|collagenase	unknown	unknown	gnl\|CDD\|366791
NZ_CP006723.1\|WP_002083945.1\|3430852_3431014_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_082285546.1\|3411690_3412113_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000881495.1\|3413356_3414253_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000267353.1\|3409759_3410110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000433650.1\|3412205_3412742_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000847798.1\|3409265_3409706_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000170133.1\|3429585_3430101_+\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP006723.1\|WP_002084812.1\|3426227_3426401_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001047885.1\|3406916_3408455_+\|NADH-quinone-oxidoreductase-subunit-N	unknown	unknown	gnl\|CDD\|235603
NZ_CP006723.1\|WP_001142685.1\|3421432_3422896_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143452
NZ_CP006723.1\|WP_001076957.1\|3424103_3425630_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP006723.1\|WP_000448574.1\|3430458_3430863_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP006723.1\|WP_001019268.1\|3411044_3411515_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000780666.1\|3426877_3427192_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_000081452.1\|3412752_3413295_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP006723.1\|WP_045192824.1\|3427225_3428908_-\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|181257

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_001109427.1\|3415077_3416349_-\|membrane-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	4.36207e-41
NZ_CP006723.1\|WP_000448574.1\|3430458_3430863_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	5.31481e-22
NZ_CP006723.1\|WP_001047885.1\|3406916_3408455_+\|NADH-quinone-oxidoreductase-subunit-N	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	4.75221e-102
NZ_CP006723.1\|WP_001142685.1\|3421432_3422896_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143452	cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.	0
NZ_CP006723.1\|WP_001076957.1\|3424103_3425630_+\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	4.17771e-62
NZ_CP006723.1\|WP_002069455.1\|3417889_3420556_+\|collagenase	gnl\|CDD\|366791	pfam01752, Peptidase_M9, Collagenase. This family of enzymes break down collagens.	4.79786e-46
NZ_CP006723.1\|WP_000081452.1\|3412752_3413295_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.32716e-29
NZ_CP006723.1\|WP_000170133.1\|3429585_3430101_+\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	2.9986e-95
NZ_CP006723.1\|WP_045192824.1\|3427225_3428908_-\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|181257	PRK08155, PRK08155, acetolactate synthase large subunit.	0

>NZ_CP006723.1|WP_000881495.1|3413356_3414253_+|hypothetical-protein
MLATFQKFFQLKFSKIQKSRIAKSDILFQNQNKSLFIKGVSFLFLWISLFTNLDAKSILLKNGRTINNVSVKTVSNGFEITHKSGKVEKIPLTEVQKVFISDRAPIPVKNQETVKNQETTKTNSVPNLETVKEENIPKNREKKSGIGVFAEGLIPGWSRLLRNDSYYVKGLGVFFVFVELFFVYKSYIYLSPVKQAIETNQPATPLDLIAITSQDHNLMNIAASYSLAEKSGQVVLSDGQLLTKDRYAYEKEGFTRGLILILILDAFLGYKFENWEIVPNVNVSYRDKEVSGGVTIRF
>NZ_CP006723.1|WP_000081452.1|3412752_3413295_-|sigma-70-family-RNA-polymerase-sigma-factor
MSQNSESQIFDFDGLYSRNYEKIYRFLLSKGASKEEAEEICQETFIKVLRHWEKFDPSKGNETSWMLTIAKNQFLDMIKKKDTVEKRELGDSQKVLEIISKKETEYEEDRYQLDLLNASVESLPQLEKNIIVLRFLRKYTIKETADKLGISVRTVNRKTFATLTVLRKKLEALNFDFESI
>NZ_CP006723.1|WP_000433650.1|3412205_3412742_-|hypothetical-protein
MEPNSDSNRRSNMERAISNEMTRLELSEFLSDPRSRKEFFELMKLKNKIGHLEMNLKLGSDENKSRTFYIRNSLLAAACVLLLSALAFYFRFFSSEQNEFEITKSVTTGQCNVSINKENIILKSGKDSYCDYTISGELGLTLRILPESIFSASKKGDEVNLSLSSGKVLFTTNKKKYL
>NZ_CP006723.1|WP_082285546.1|3411690_3412113_-|hypothetical-protein
MVLEGAIRVDSTKSKMDILPGYSVLKDGSSESSTQSSGQEVEVMKIEPKEFTKYQALSENSKKVLNENFTHHNRETDFLIKSEIEENSYPIYRITLKNKQVVSGTIEETEKFYLLKDKDGNIKEIEKEDIIELELVQPKN
>NZ_CP006723.1|WP_001019268.1|3411044_3411515_+|hypothetical-protein
MNIEIGKGLNGIYFGMSIDEVKSKLGEPDEIYDYDYEGTQSTGYEYFSEESEYEFDQEEDNKLYSITTSNPSIQLFGKPIIGESIETIRELLNQNGIDDLEEDDEEEHDQEEDHDHTGVTAFSDKINAVFQFEEDELVFFGFSPLFKDDQIDWPKY
>NZ_CP006723.1|WP_000267353.1|3409759_3410110_-|hypothetical-protein
MWNSIPNNVRISFFIFIILAFLGFFSLGAVGFGLYYLIFPVAGFFFPHPDSLHGDWVWPSAIWVGILWPLGFIFASILFNFLKKRNWPKSILYFLYIPLLWLWVALLWLYFINNKM
>NZ_CP006723.1|WP_000847798.1|3409265_3409706_-|hypothetical-protein
MKTGKSWIAVLWIMLCLFVYDCEEINTNDPVSAYLYWSGDSSLPKDLEVIHGKYWESPHITHEHILFLEIKAPLQWRKEFKELNQLKEVKKKSSKNKYFDQNAEYPVWFKPPKYFKVFIPKSEYIKGSTYFENPVDGHMFLYEVHL
>NZ_CP006723.1|WP_154213701.1|3409065_3409209_-|hypothetical-protein
MVSCTFKSCYSRIRVVSELEFVGTSIKYKKNHRPSDFCAKSLFCGHY
>NZ_CP006723.1|WP_002109690.1|3408585_3408726_-|hypothetical-protein
MILNHIFSERNLAVVPTFKKSVCKVQILTFFRIMVSYAELILNNNC
>NZ_CP006723.1|WP_001047885.1|3406916_3408455_+|NADH-quinone-oxidoreductase-subunit-N
MNLFDLSILPFLNLAQVVNESRVPNVPDLLSVLPALVLATGGVFLICLSVLFKTKEFIIVRYVSGLILLLAFAAVFYTSFRFPGNGFHFSGQIENSVLSFWLNLIYISMAIGTAAIVPRILKNHKIEFPEFYPLLLFATCGMTLMTTGQDFILVFVALELMSICLYILIGMARSDLFSLEATLKYFLLGSFSSGFMLMGIAFLFGGSGSTNITEALKPLTIAGYQGNFAKIGLVLFITGVAFKIALFPYHAWTPDAYEGALTPVTGYMSTAAKAASIGLLLILYTKLPLPLENSTWAWLPGILALCSMIYGNLLALKQENLKRMLAYSSIAHAGYVVAGISAGIKEEVLFYLIVYSFMSLGAFAILAYLEEGTRQVTFFSVQSLSGVKPLTAIAINIFFMSLAGVPPFGGFWAKLFLFQKLAESETLMNRILLIGGVTNSALALYYYLRIGIATFMSSDEGEISRNHAAPYSVGVTGVVLFCLLMVSVGWFLLVPGNLLALGELRLSSSIFR
>NZ_CP006723.1|WP_001109427.1|3415077_3416349_-|membrane-protein
MNYRFTNILKVIIFFCFIFEIQSEEIQKPYKNLEKALQNPADVRNLDLSFLGLKTLPNKIGQLKNLQKLDLGGNEPTILSKEIWQLKDLQKLNLNNNKLTVLPKEIGQLQNLQELSLHSNELVNLPKEIGQFKNLQKLNLDNNKLTVLPKEIGQLQNLQELSLLSNKLISLPTEIEQLKSLKNLDLNNNEFTTVSKEVMLLETLENLDLRSNKLKTIPKEIRQLKSLKVLMLTGNQLTSLPKEIEQLQNLKTLNLGENRFQIFPVEILELKNLLELNLYYNQLVEFPKEVGQLKSLKYLSLYHNQITTLPVEVTQLPDLQELHLSGNKITILPKEILQLKNLEWLSLSNNKLNALPKEIGQLKKLQRLELGNNQLTTLPKEIEQLKNLQRLELDSNPISPKEKERIRTLLPKCEIDFEGGGGE
>NZ_CP006723.1|WP_002069455.1|3417889_3420556_+|collagenase
MITNIKYKLAITLSVLVTFSLGCNSQNNGSKNDLSLFATMFAQATQQTTMRSTTVSVSSLNELIGFKPIQVENEQDFDRIADGKKRILVPSVMTFGPSNSYSNGTAQNITSNNCNGSYVARLKPKEFVRFLETHDINCVDKFVWNYDQYSDYIYSQENMLEVVNRLNDLAPFYNGNNDLNFIQLFRMFWAGYYVKHSHPSLPFDTNQISQALVTPMQIFASSAHFLDGTNDAGKVLEFFFTVADSTKIGHTIYPRILSFLEATINDPQRLRNNLSQAIALNAVFRLFQRHIHSNSNEFLTMIDYRLISKLRRLALDTSLNTDSQVWIINNAIFGLDRIYEYLPSFQPVIASVMTDVLETYPYISEPYLLGIKALTRHSDCANLRIGRICLSDIKETVKKAVLSNTYYFDDKTQIVHTALSIDEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSITMYVYKSRKDYETFHPFLFDLSTDNGGIYIERDKTLYTYQRTPAESIYTLEELLRHEYSHYLVGRFIIPGLWSQTSAHDNERLTWFEEGIAEFLTGSSSREIHPRKSLISEIKRDGSSRMDVSKILTARYGDFKFYRYSGNFFNYLYTYKKDTLKDLISALRDSNIQTFDFLIDQMSHDTGLNTSFQAYLDYLVSNVDNLTDPSTPAPDLANLSTNDPKVIRSFFRKTETGLKAKCTTAAFGLNSRFSCRGLIFGNATYSPDWNSAWSDFNSRINDLMSTLESSGVNNFQSMNCRIGEIRFDKHLNLFRPFTIYSCEGPLAYRSRISYRHPQRGQTDFRNTRIGIHSTCFATPSNGSSTTCNTPIVTNVFSNTATYEEMYQKLNGELNELKSEVYTMRPSFYKKLDCNFDSIDTIHLPDGRKYLAANSSCNF
>NZ_CP006723.1|WP_001142685.1|3421432_3422896_-|aldehyde-dehydrogenase-family-protein
MPTLQESPVKLPNSNQPPSVNKTEIERVFNLQKKHFHKVMKLTTAGQRIQRLKKLKEAIFKYSPEIEKAVHSDFRKSEREVDITEIMPSISEINDAIKHVRRWMKPVDVKTPMTLFGSKSQIIYEPRGVVLIIGPWNYPFYLTFAPLAAAIAAGNTVLIKPSEFTPVTSNLIQKIISEVFPKEEVAVFEGDYQVSGALMELPLDHIFFTGSTHVGKIVMTAAAKHLTTVTLELGGKSPAIIDKSADIKKAAKKLIWGKVLNAGQTCVAPDYLLIPNELIKPFVEEAKTVIKEFYGNSLKENSDFCRIVNDRNFNRVSGYIHEAVEKGAKIEMGGDTDASQNYIEPTLLSNVPENSNIMEDEIFGPVLPMIPYTNLDEAIEKINSKPKPLALYIFGKKDRSIKKILKETSSGGVAVNDVILHLANPNLPFGGINHSGHGSYHGYFGFKAFSHERSVLRQAALSSIDLMYPPYTNFVKRLVSFTKKFLV
>NZ_CP006723.1|WP_001076957.1|3424103_3425630_+|HDOD-domain-containing-protein
MNQTKTFEFHHHRDLGLYSNLKDLNHSVLENIPVHYRFHNLTENVDSTISRTLDRYLIQLDIIYVRDSVLTTLKETIANSIKANIKRIYFQELKADIHNPVIYKQKISGFKKDYLDNKEKYEELLFKNNFVVLVSFIYNKDMIRIRVMNNVKLSPTEVERINQRIEKARLYNDLAEAFLEAGDETEGAGLGLVMSLMMLKNDGLSASSYKIESQGNNTSVIIDIPLNISKENLQLQKTQDILKNIDGLPTFPKSIQDIQTMISKPNSSINQIAEVIKKDVALSANILKLANSAAFIRANKVESLDRAIQLIGLKELSQLLYSLGTKQILEGKFPAFLSIWEKSNQCAFYCKLIASRINLPKDTISNLVSAALLHDIGEIILLSLEEKTMNNIGKISASKEIASAVSMEEAALGITHTKVGSLIAEKWNFPDLYSKSMEFHHRPLIVEEEFISYIYPIYLADMMIKINNEEAKFSEIPEKILQFCKFEHSGEFHSFRTKALESFLARVE
>NZ_CP006723.1|WP_002084812.1|3426227_3426401_-|hypothetical-protein
MILLVFHGSSYNFQSVTGKPTICESSHIFFLQKSCSRIKTNFLTFPVHVEIVFCDQN
>NZ_CP006723.1|WP_000780666.1|3426877_3427192_-|hypothetical-protein
MKLYEDFKTKYYTFDISSEEGSGTILRMIGILSRKSIDWLDWRLRRNVESESQKIMIVIRTEEPDKILNLFRSIPEIREIRYFESNLSSELIFEKEDTFVVSVF
>NZ_CP006723.1|WP_045192824.1|3427225_3428908_-|biosynthetic-type-acetolactate-synthase-large-subunit
MNLNGAELMIRFLEFAGVEIVSGIPGGASLPIYDALYESKIRHILARHEQGAGFIAGGMARANGKPGVCFASSGPGVTNLITAVADAKMDSIPLIVITGQVPVSMIGTDAFQEIDTFSLSVPITKRSYLVKKIEDLIQILPQAWKTAIEGRPGPVWIDVPKDVASAKIDWDISREKEIWNIQKIEFKDTIDLEWKKTFKELLSKAKKPVFYIGGGLNRPLAAELFCILLEKLNFPTVSTLMGLGICPYEHPRFLGMLGMHGSRAANLVLEEADLLVALGVRFDDRATGKLNEFCPNAKIVHVDIDATEIGKLKNPNLFLKHGVENFITQILEEDLSSEHLSSEEWLNQVQTLKTLYGFSIPKENQILHPVSILQSISNILGEKAIITTDVGQHQMWVAQYYPFRKQGSFLTSGGLGTMGFGLPAAIGAALVFPEKRIVCISGDGSILINIQELDTLRELNLDVTILLINNGHLGLVRQQQELFFSSRFSASKFVIPANFIKIASSFGIPSFELSNECSQVEILEQALIRKGPSFVLLQVEPDLQVLPMVPPGKANREMIY
>NZ_CP006723.1|WP_000170133.1|3429585_3430101_+|thiol-peroxidase
MTKVTLKGNPVQLEGKIPSPGDKAPDFKAIKQDLSEFSLKDYAGKVKILVAVPSLDTSVCALETKAFNEKAAGISGVTTLVISGDLPFAMGRFCSTEGINSPNLVTGSQYRDFSFSKAYGTHIADGPLKGLSARAVFVLDKSDTVRYVEIVPEITTEPNYTAAIAAANAAL
>NZ_CP006723.1|WP_000448574.1|3430458_3430863_-|STAS-domain-containing-protein
METKPNSMSHKNNEMKISIENISSSGTLPGPAVIIQVQGDINLFSAKELKDTFNELIEKKIYLLLVDLSGVRTMDSSGIATFIGAQNRLNKIPCAGLALYSLPQQIEKMLELTRLKALFRTAPDLSEAIRIFSI
>NZ_CP006723.1|WP_002083945.1|3430852_3431014_-|hypothetical-protein
MFKIRFTFMAFLKFAKHFDSFTVHKKIISHLLLNLWIDMDNRFQTFSEMDYGN

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Crispr_ID: NZ_CP006723_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006723_17

3511815-3511909

Orphan

Consensus_repeat	Method
TAGGGAGGTGTTTGCTGAGTTTCCACCGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006723_17

>merge|NZ_CP006723|17|3511815-3511909|CRISPRCasFinder
TAGGGAGGTGTTTGCTGAGTTTCCACCGACACCTGCAGAGCAACCATAGAAGATACATTGAGTTTAGGGAGGTGTTTGCTGAGTTTCCACCGACA

>NZ_CP006723|17|17|3511815-3511909|CRISPRCasFinder
TAGGGAGGTGTTTGCTGAGTTTCCACCGACA	CCTGCAGAGCAACCATAGAAGATACATTGAGTT
TAGGGAGGTGTTTGCTGAGTTTCCACCGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006723.1\|WP_000440099.1\|3505560_3505926_+\|DUF2203-domain-containing-protein	unknown	unknown	gnl\|CDD\|378330
NZ_CP006723.1\|WP_000600181.1\|3517639_3517894_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_002120142.1\|3503647_3504592_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
NZ_CP006723.1\|WP_000868428.1\|3521638_3521752_-\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179039
NZ_CP006723.1\|WP_001216436.1\|3515501_3517409_+\|DUF1561-domain-containing-protein	unknown	unknown	gnl\|CDD\|284921
NZ_CP006723.1\|WP_100221575.1\|3500825_3501973_+\|IS3-like-element-IS1500B-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP006723.1\|WP_000752685.1\|3520844_3521255_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NZ_CP006723.1\|WP_002109405.1\|3500054_3500573_-\|DUF5063-domain-containing-protein	unknown	unknown	gnl\|CDD\|374737
NZ_CP006723.1\|WP_001284168.1\|3505909_3507136_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181053
NZ_CP006723.1\|WP_002071626.1\|3504628_3505555_+\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
NZ_CP006723.1\|WP_000575930.1\|3514810_3515056_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006723.1\|WP_001042619.1\|3518692_3519208_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_CP006723.1\|WP_000090769.1\|3521257_3521635_-\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
NZ_CP006723.1\|WP_000135260.1\|3520209_3520833_-\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NZ_CP006723.1\|WP_000999362.1\|3502451_3502772_+\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|377473
NZ_CP006723.1\|WP_000494155.1\|3510350_3510740_+\|DUF4907-domain-containing-protein	unknown	unknown	gnl\|CDD\|374455
NZ_CP006723.1\|WP_000054108.1\|3519209_3520187_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NZ_CP006723.1\|WP_000911426.1\|3502832_3503141_+\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP006723.1\|WP_000428415.1\|3512308_3513454_+\|DUF5009-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NZ_CP006723.1\|WP_082271383.1\|3509171_3510275_+\|galactose-oxidase	unknown	unknown	gnl\|CDD\|276965

Protein	Function_ID	Function_description	E-value
NZ_CP006723.1\|WP_000440099.1\|3505560_3505926_+\|DUF2203-domain-containing-protein	gnl\|CDD\|378330	pfam09969, DUF2203, Uncharacterized conserved protein (DUF2203). This domain, found in various hypothetical bacterial proteins, has no known function.	1.94749e-28
NZ_CP006723.1\|WP_002120142.1\|3503647_3504592_+\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	7.98187e-21
NZ_CP006723.1\|WP_000868428.1\|3521638_3521752_-\|50S-ribosomal-protein-L36	gnl\|CDD\|179039	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed.	4.38154e-11
NZ_CP006723.1\|WP_001216436.1\|3515501_3517409_+\|DUF1561-domain-containing-protein	gnl\|CDD\|284921	pfam07598, DUF1561, Protein of unknown function (DUF1561). A family of paralogous proteins in Leptospira interrogans.	0
NZ_CP006723.1\|WP_100221575.1\|3500825_3501973_+\|IS3-like-element-IS1500B-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.35444e-53
NZ_CP006723.1\|WP_000752685.1\|3520844_3521255_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.46344e-75
NZ_CP006723.1\|WP_002109405.1\|3500054_3500573_-\|DUF5063-domain-containing-protein	gnl\|CDD\|374737	pfam16702, DUF5063, Domain of unknown function (DUF5063).	1.08037e-36
NZ_CP006723.1\|WP_001284168.1\|3505909_3507136_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|181053	PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated.	0
NZ_CP006723.1\|WP_002071626.1\|3504628_3505555_+\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	4.30407e-131
NZ_CP006723.1\|WP_001042619.1\|3518692_3519208_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	7.24259e-45
NZ_CP006723.1\|WP_000090769.1\|3521257_3521635_-\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	1.04037e-75
NZ_CP006723.1\|WP_000135260.1\|3520209_3520833_-\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	3.4174e-111
NZ_CP006723.1\|WP_000999362.1\|3502451_3502772_+\|TM2-domain-containing-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	2.19124e-18
NZ_CP006723.1\|WP_000494155.1\|3510350_3510740_+\|DUF4907-domain-containing-protein	gnl\|CDD\|374455	pfam16250, DUF4907, Domain of unknown function (DUF4907). A family of uncharacterized proteins around 110 residues in length and found in various Bacteroides species. The function of this family is unknown.	1.3223e-18
NZ_CP006723.1\|WP_000054108.1\|3519209_3520187_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	8.52613e-166
NZ_CP006723.1\|WP_000911426.1\|3502832_3503141_+\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	1.12264e-09
NZ_CP006723.1\|WP_000428415.1\|3512308_3513454_+\|DUF5009-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	1.18496e-55
NZ_CP006723.1\|WP_082271383.1\|3509171_3510275_+\|galactose-oxidase	gnl\|CDD\|276965	sd00038, Kelch, Kelch repeat. Kelch repeats are 44 to 56 amino acids in length and form a four-stranded beta-sheet corresponding to a single blade of five to seven bladed beta propellers. The Kelch superfamily is a large evolutionary conserved protein family whose members are present throughout the cell and extracellularly, and have diverse activities. Kelch repeats are often in combination with other domains, like BTB and BACK or F-box domains.	5.6681e-18

>NZ_CP006723.1|WP_000494155.1|3510350_3510740_+|DUF4907-domain-containing-protein
MFTIKRSVILFIILIVFTSCDLPKSEKTDVQSVDQTSLKNAKFQIKTYRSDSGGYGYDIFVNTARMIHQPHIPGLKGVKGFDLESQAEQTANLVINKLRSGIMPPTITEQEIDLILRSKNQAAEKTTQP
>NZ_CP006723.1|WP_082271383.1|3509171_3510275_+|galactose-oxidase
MQITKALTIFLVSIGCLVFGTCNEQNSDENKTLLSILEASSTNLPVNPTMINTQNMSVDPEPEPEPEPPWDGVGWGIRKNFPWYGRNGAVTFAINGKGYLAGGVSYYGFQNDLWKYDPTTDSWMQKANIPSPVGYRHASGFALNGKGYYGLGIDNNSTLYKNWREYNPITNQWVSKLNFPGPARFGAVSFTIGNKGYLGTGSTTDISDGNNVKSDFWEYNPTTDSWRKIAGLPTVNRRVYATSFVIGTTGYVGGGSPDDVKNASLQDFWKYQPVEGQPGTWAQISSLPAKRTDMLGFSLWGVGIVGGGSEIELWSYHPSTDSWQREVNLPYFPYDSLIFRSVFTIGDYAYGIVGQKVYQFYKIPPGQ
>NZ_CP006723.1|WP_001284168.1|3505909_3507136_+|LL-diaminopimelate-aminotransferase
MANINENYLKLKAGYLFPEISKRVKIYSEKNPSAKIIRLGIGDVTLPIVPSVVDAMVEASKEMGTVGGFHGYGPEQGYSFLLKSIADHDYGSLGIKIDESEIFVSDGSKCDCGNIQEIFSTDSKIAVADPVYPVYVDTNVMAGRTGEIGPDGRYSNLIYMPATKENGFQPEIPKEKADIVYLCYPNNPTGTVTTKESLKAWVEYAKKNNSIILYDSAYEAFISEPGVPRSIYEVEGAKEVAIEFRSFSKTAGFTGLRCAYIVIPKELKGRTRSGEEVSLNSLWNRRHTTKFNGVSYVTQKGAEACYSPQGKKEIQTSIAYYMANASKIRDGLKKAGYEVFGGVNAPYIWLKTSDNLSSWDFFDKLLNKAQVVGTPGSGFGPAGEGYFRLSAFGKKEDVEEAIARITSL
>NZ_CP006723.1|WP_000440099.1|3505560_3505926_+|DUF2203-domain-containing-protein
MERKLWTYQEARKILPIVKEITEKYYSYVSELAVQLRDKILPENEMENKEEEIRKLILEWSSKIQEFGIEVKGLWLIDFDNGNGYYCWHLGEEDLLYEHGYEEGFAGRKRIDKDQKDGEHQ
>NZ_CP006723.1|WP_002071626.1|3504628_3505555_+|aspartate-carbamoyltransferase
MYYNHKNVLDTEQFSKPDLDFLIGKIRVMERLVEQNKAFGILTGKLLASLFFEASTRTRLSFEAAMERLGGRVISTVGFQFSSISKGETLYDTMKMVEAYADIAVIRHPVEGSSRIAAGAVKIPVINAGDGAGQHPTQAILDLYTIISEKGTLDGLTVAFIGDLKYGRTIHSLINLLRHYKVHLFLISPPELALPESYKKALQGYSLTLEETTDIKAVWDCDVAYVTRIQEERFPDHKEYERLKDLFKVNKELILASKKNTTVLHPLPRVNELSTDVDDLPNAAYFRQARYGVVSRMTLLCLSLGQDF
>NZ_CP006723.1|WP_002120142.1|3503647_3504592_+|fatty-acid-desaturase
MSNRIQTFSFLELLSHRFENRFQYDIPKWIYVLNIFKFIESFFIPVFLFLFSTIFSYTLWALIHECVHGNFSNSRNENRFWGRFLCIFFGTPFQVVKTAHLVHHKFNRSQGERIEYIEKNAGPILFQKLLYYVRLFMGTYFLEVLGGFLLSLPLSFTSPITEKYFSKFPVYKTFFKQIQKPEIVQELRIDSILILILFGCAFYLCGPNTVFLISVLILRGWIVSFLDHSYHYGKELEDVNSAYNLYLPKFFSYLFLNFNYHRVHHRFPGCSWNRLPIQFKNSNDSMDLSLWIQSIRQLSGLLILPEKSDPHKSI
>NZ_CP006723.1|WP_000911426.1|3502832_3503141_+|DUF2752-domain-containing-protein
MLKFQKKIKFAFVSFGAFIFYNIPIEYMTGRYTVCLFKLILERECIGCGTVRGFWCILHLQFEEAFRFNQTIFITFPLFIFCILYWTFNMDFRKFKRNLLGI
>NZ_CP006723.1|WP_000999362.1|3502451_3502772_+|TM2-domain-containing-protein
MNDNISKGMDEVFCSSCGSIIKKAAEICPKCGVRQKGSASDNWLITFLLCLFLGVLGVHRFYTGKIGTGILMLITGGGCGIWALIDLIMILLGNYKDSQGNPITRN
>NZ_CP006723.1|WP_100221575.1|3500825_3501973_+|IS3-like-element-IS1500B-family-transposase
MNKKGKYSPEFKEQAVKRTLSGSFTIKEVAGSLGISYFVLRQWRGEYLKKSEDQLPLTDKQLKESEELKKLRKENLKLKEEVTIPKKVCSHAFPRTKSRLMFMETHRFEYSIQSMANVLGVSRSGFYQFLKRSKNELEKYNPELVEFIRETWLTSRKNYGLVRLLREVKKVYSIYGARTVRKVMKLCEIQGKQEKRFRIATTDSNHGNRVAPNLVQRNFKPNQKNRIWVSDITFLRSSFGWIYLCVILDLYSRKVVGWSISNSNDSKLVCTALSKAIECRNPPKGLVFHSDRGSNYCSYETRRYLLNNKLRRSNSRKGNCWDNAVAESFFGSLKREMEYNYFYKIQEAEELLFDHIEVYYNRHRSHSSLDFVSPVQFEVNAA
>NZ_CP006723.1|WP_002109405.1|3500054_3500573_-|DUF5063-domain-containing-protein
MSIIVDSSTSHLPEIKSFVEAVRQYCKMIESIDNQKELCTFLRQVAASIAHLYTCAFDLPEISLQYKFTEVISKSGEYEKSLSSLLGSYNFYNISLAPLDLTQPELAIGALSDDLGELYSDLKSALDCFDRRELSYVEHSLWSWKFGFETHWGEHLTNALQHIHFLLFDQYV
>NZ_CP006723.1|WP_000428415.1|3512308_3513454_+|DUF5009-domain-containing-protein
MENKLNQNRILSLDLFRGMTVAGMILVNNPGSWSFIYSPLKHARWNGCTPTDLVFPFFLFAVGISIHFSVYSKNKIYLSKTWLGICIRSITLILIGLFLNFFGEWSFSELRIPGVLQRIGFVYWVVASLYLILPKRAILISWIPILIVHTWILIQLPPPGESIVYLEPGKDIGAWIDRNVFGENHLWKFSKTWDPEGFFSGISSITTSLLGVFCGSILSSKTNETKKQILSIFGFGTLFVLVGLLWNQNLPMNKSLWTGSYVIYTAGLAFLSIGFFEFLNLLLQTKKWNRLRLETIFQPFLVFGKNAILVFVGSGLLARILNLWTIASGNGKSISIKTLFYSKLIFIGNSHLESLIYAIINLFFWWIILSILDKKKIYIKV
>NZ_CP006723.1|WP_000575930.1|3514810_3515056_+|hypothetical-protein
MIFFYSETIKAKMMNKFLIIFINSFLLRILDSLYTLCKNIVVMFNKEKFRNVTSWLELVEQIGFLYIPQYLFLCVKTKNII
>NZ_CP006723.1|WP_001216436.1|3515501_3517409_+|DUF1561-domain-containing-protein
MRHSIVFIVVLLVLVTTSFEYSINNIHIHASSNTSNSIIQKPTDQPKDKPIKIVIHDGKKFCYAPVFSGGESYIVIEQCWQMHVMNARYDVFQRISYNINNTWLCITAPETVVYAKENWDYVHLRPCAINDPLQRWVIKDNSFWTANERYQLKDTNWYVYISKNSGDRYSHTLDSSMNDWLNTIATPGNISIQTSIAWDLQTTEGQERYFIRWRGSNKNTTPLYYNPESGHLAQYDPVSGSLYCMYSQVDDNQWNWVTWTLCSDIPISKNNPAFWNVFFEADQGGIITDYKGNLLRVTRYGSNWGVAYAAKPDFVKTDTKNSPTSLFVVDKSLLDWTRYTYSNLGKTDQYCPAGNKENILHKRAKRTLPTDFQLTEDWVRRLYAIATSTIPEAQSSGICGTCLLHSFQMLAELQEYHSQGPLQSGGYFFNTAPNTDPFISFRQRYPLLDMLLSDVPTVYSSAGRTTRQLGLVSARTVLPQYNWIASSEFITRSEIRSHITSLIASPSGRIWLAILRLRRTDGVSGWHAVPILRTSQGLVVIRTRASLTSLDNYRQSLTPTMDPDLVIDNYLERPDLSLERLTTIQLGEVYHNTFDFIISNRNCTGEGDDRRGTGEYPTSASVNQCSSRRNRCALQ
>NZ_CP006723.1|WP_000600181.1|3517639_3517894_-|hypothetical-protein
MILFVFPSTSHNFQSLTGKFTIYESSHIYFFTKKLTERKRISYAELMLNSTRIRRKKMRKNFLRYELLHIRIVEKLILHLVSVL
>NZ_CP006723.1|WP_001042619.1|3518692_3519208_-|50S-ribosomal-protein-L17
MNKRNKVKHLNRNKGHRDALINNMITSLFKYERIESTQAKLKVVRSHAEKLITRAKKNLVTDLKPEVQLHNKREVMKRIKDREVVVKLFEDIAKRFETKNGGYTRVLKLVNRISDNSEVGILELTSRKERSTLLKERIEKREIQTKAREEKRATRKSNSAPVSKETTSKKK
>NZ_CP006723.1|WP_000054108.1|3519209_3520187_-|DNA-directed-RNA-polymerase-subunit-alpha
MSLKSLLKGFKRPKKIEFNTEANTPNYGKFVAEPFERGFATTIGNSLRRTLMSSIEGAAISAIRIEGVNHEFSFIEGVAEDVTRIILNLKQVRIKYEPEEKDQSKIIHLELKGAGYFRAGDLAVDSSIEIMNPDLHIATLNEDANLVMDLEIQRGRGYVPAEEKKKDIEVLGTIPVDSIFSPVQKVVFEVSETRVAQRSDYEKLTLEVWTDGSVSPDDAVAQAAKILKEHLTVFINFEEELEEEDDELDEADEKLKASLSKHVEELELSVRSLNVLRSLEIDFIGDLVKRSEEEMSKSKHYSDQCLQELKVKLSTLGLSFGMRDF
>NZ_CP006723.1|WP_000135260.1|3520209_3520833_-|30S-ribosomal-protein-S4
MARYRGPVVKIMRREGVDLFLKSSYTFNKDKFHRKGPPGMPTKRKGKVSEYGAQLREKQKLKRAYGLLEKQFRRYYEEASHAHGVTGEILLQLLERRLDNVVYRLGFAITRRQARNFIAHRHILVNGERVDIPSYRLNVGDKVEIREKFKTSSFIADNIKLSQSLQGIPSWLSADYTNFGGDVTALPERHHIDLPVKEQVIVELYSK
>NZ_CP006723.1|WP_000752685.1|3520844_3521255_-|30S-ribosomal-protein-S11
MADDKKSAKKEKKVKKKEKKIVPRGKVYITASFNNTIVTITDMAGNTISWSTSGAMGFRGSKKSTPYAAQIAAGNAAEKAMDSAGLQEVDVMVSGPGIGRESAIRSLVARGLNIKMIKDVTPLPHNGCRPRKRRRV
>NZ_CP006723.1|WP_000090769.1|3521257_3521635_-|30S-ribosomal-protein-S13
MARIAGIDLPREKRIVVGLTYIFGIGNSLSKLILKKAGIDESIRVKDLNESQEAAIRKTLEETAKVEGDLRSEIQLNIKRLMDIGCYRGLRHRRGLPVNGQRTRTNARTRKGGKKTVANKKKVTK
>NZ_CP006723.1|WP_000868428.1|3521638_3521752_-|50S-ribosomal-protein-L36
MKVRTSVKKICSSCKVIRRKGVIRVICTNPKHKQRQA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP006723_6	6.1\|2180927\|36\|NZ_CP006723\|CRISPRCasFinder	2180927-2180962	36	NZ_CP006723.1	757227-757262	2	0.944
NZ_CP006723_6	6.1\|2180927\|36\|NZ_CP006723\|CRISPRCasFinder	2180927-2180962	36	NZ_CP006723.1	2229351-2229386	2	0.944
NZ_CP006723_6	6.1\|2180927\|36\|NZ_CP006723\|CRISPRCasFinder	2180927-2180962	36	NZ_CP006723.1	2279055-2279090	2	0.944
NZ_CP006723_6	6.1\|2180927\|36\|NZ_CP006723\|CRISPRCasFinder	2180927-2180962	36	NZ_CP006723.1	2516859-2516894	2	0.944
NZ_CP006723_6	6.1\|2180927\|36\|NZ_CP006723\|CRISPRCasFinder	2180927-2180962	36	NZ_CP006723.1	3230180-3230215	2	0.944
NZ_CP006723_6	6.1\|2180927\|36\|NZ_CP006723\|CRISPRCasFinder	2180927-2180962	36	NZ_CP006723.1	3826560-3826595	2	0.944
NZ_CP006723_9	9.2\|3203049\|37\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203049-3203085	37	NZ_CP006725.1	34197-34233	1	0.973
NZ_CP006723_9	9.14\|3203908\|34\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203908-3203941	34	NZ_CP006725.1	31227-31260	0	1.0
NZ_CP006723_16	16.1\|3414495\|46\|NZ_CP006723\|CRISPRCasFinder	3414495-3414540	46	NZ_CP006723.1	1691986-1692031	0	1.0
NZ_CP006723_16	16.1\|3414495\|46\|NZ_CP006723\|CRISPRCasFinder	3414495-3414540	46	NZ_CP006723.1	1692057-1692102	0	1.0
NZ_CP006723_16	16.1\|3414495\|46\|NZ_CP006723\|CRISPRCasFinder	3414495-3414540	46	NZ_CP006723.1	1692128-1692173	0	1.0
NZ_CP006723_16	16.1\|3414495\|46\|NZ_CP006723\|CRISPRCasFinder	3414495-3414540	46	NZ_CP006723.1	1692199-1692244	0	1.0
NZ_CP006723_16	16.1\|3414495\|46\|NZ_CP006723\|CRISPRCasFinder	3414495-3414540	46	NZ_CP006723.1	1692270-1692315	0	1.0
NZ_CP006723_16	16.1\|3414495\|46\|NZ_CP006723\|CRISPRCasFinder	3414495-3414540	46	NZ_CP006723.1	1692341-1692386	0	1.0
NZ_CP006723_16	16.1\|3414495\|46\|NZ_CP006723\|CRISPRCasFinder	3414495-3414540	46	NZ_CP006723.1	3186547-3186592	0	1.0
NZ_CP006723_16	16.1\|3414495\|46\|NZ_CP006723\|CRISPRCasFinder	3414495-3414540	46	NZ_CP006723.1	4043652-4043697	0	1.0
NZ_CP006723_16	16.1\|3414495\|46\|NZ_CP006723\|CRISPRCasFinder	3414495-3414540	46	NZ_CP006723.1	4043722-4043767	0	1.0

1. spacer 6.1|2180927|36|NZ_CP006723|CRISPRCasFinder matches to position: 757227-757262, mismatch: 2, identity: 0.944

gaatgccgatccttagagaggcatttgctgagtttt	CRISPR spacer
gaatgccaatccttagagaggcattcgctgagtttt	Protospacer
*******.*****************.**********

2. spacer 6.1|2180927|36|NZ_CP006723|CRISPRCasFinder matches to position: 2229351-2229386, mismatch: 2, identity: 0.944

gaatgccgatccttagagaggcatttgctgagtttt	CRISPR spacer
gaatgccgatccttagagaggcattcactgagtttt	Protospacer
*************************..*********

3. spacer 6.1|2180927|36|NZ_CP006723|CRISPRCasFinder matches to position: 2279055-2279090, mismatch: 2, identity: 0.944

gaatgccgatccttagagaggcatttgctgagtttt	CRISPR spacer
gaatgccaatccttagagagccatttgctgagtttt	Protospacer
*******.************ ***************

4. spacer 6.1|2180927|36|NZ_CP006723|CRISPRCasFinder matches to position: 2516859-2516894, mismatch: 2, identity: 0.944

gaatgccgatccttagagaggcatttgctgagtttt	CRISPR spacer
gaatgccaatccttagagaggcattcgctgagtttt	Protospacer
*******.*****************.**********

5. spacer 6.1|2180927|36|NZ_CP006723|CRISPRCasFinder matches to position: 3230180-3230215, mismatch: 2, identity: 0.944

gaatgccgatccttagagaggcatttgctgagtttt	CRISPR spacer
gaatgccgatctttagagaggcattcgctgagtttt	Protospacer
***********.*************.**********

6. spacer 6.1|2180927|36|NZ_CP006723|CRISPRCasFinder matches to position: 3826560-3826595, mismatch: 2, identity: 0.944

gaatgccgatccttagagaggcatttgctgagtttt	CRISPR spacer
gaatgccgatccttaaagaggcattcgctgagtttt	Protospacer
***************.*********.**********

7. spacer 9.2|3203049|37|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to position: 34197-34233, mismatch: 1, identity: 0.973

gatcaagggcgaaaacttccggcggaaattacgacgg	CRISPR spacer
gatcaagagcgaaaacttccggcggaaattacgacgg	Protospacer
*******.*****************************

8. spacer 9.14|3203908|34|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to position: 31227-31260, mismatch: 0, identity: 1.0

gaatacaacctcttcaaaaaagaggaaccggcgt	CRISPR spacer
gaatacaacctcttcaaaaaagaggaaccggcgt	Protospacer
**********************************

9. spacer 16.1|3414495|46|NZ_CP006723|CRISPRCasFinder matches to position: 1691986-1692031, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

10. spacer 16.1|3414495|46|NZ_CP006723|CRISPRCasFinder matches to position: 1692057-1692102, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

11. spacer 16.1|3414495|46|NZ_CP006723|CRISPRCasFinder matches to position: 1692128-1692173, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

12. spacer 16.1|3414495|46|NZ_CP006723|CRISPRCasFinder matches to position: 1692199-1692244, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

13. spacer 16.1|3414495|46|NZ_CP006723|CRISPRCasFinder matches to position: 1692270-1692315, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

14. spacer 16.1|3414495|46|NZ_CP006723|CRISPRCasFinder matches to position: 1692341-1692386, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

15. spacer 16.1|3414495|46|NZ_CP006723|CRISPRCasFinder matches to position: 3186547-3186592, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

16. spacer 16.1|3414495|46|NZ_CP006723|CRISPRCasFinder matches to position: 4043652-4043697, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

17. spacer 16.1|3414495|46|NZ_CP006723|CRISPRCasFinder matches to position: 4043722-4043767, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006723_9	9.14\|3203908\|34\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203908-3203941	34	NZ_CP006725	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence	31227-31260	0	1.0
NZ_CP006723_9	9.14\|3203908\|34\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203908-3203941	34	NZ_CP039285	Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence	49050-49083	0	1.0
NZ_CP006723_9	9.2\|3203049\|37\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203049-3203085	37	NZ_CP039285	Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence	46077-46113	1	0.973
NZ_CP006723_9	9.2\|3203049\|37\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203049-3203085	37	NZ_CP006725	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence	34197-34233	1	0.973
NZ_CP006723_9	9.11\|3203694\|36\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203694-3203729	36	KF114877	Leptospira phage LnoZ_CZ214, complete genome	35612-35647	2	0.944
NZ_CP006723_6	6.1\|2180927\|36\|NZ_CP006723\|CRISPRCasFinder	2180927-2180962	36	NZ_CP020413	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence	273692-273727	3	0.917
NZ_CP006723_6	6.1\|2180927\|36\|NZ_CP006723\|CRISPRCasFinder	2180927-2180962	36	NZ_CP020413	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence	128759-128794	3	0.917
NZ_CP006723_10	10.1\|3204316\|35\|NZ_CP006723\|CRISPRCasFinder	3204316-3204350	35	NZ_CP006725	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence	25961-25995	3	0.914
NZ_CP006723_10	10.1\|3204316\|35\|NZ_CP006723\|CRISPRCasFinder	3204316-3204350	35	NZ_CP039285	Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence	54324-54358	3	0.914
NZ_CP006723_11	11.3\|3204719\|36\|NZ_CP006723\|CRISPRCasFinder	3204719-3204754	36	NZ_CP006727	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence	51384-51419	3	0.917
NZ_CP006723_9	9.4\|3203195\|34\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203195-3203228	34	MN693402	Marine virus AFVG_25M260, complete genome	142-175	7	0.794
NZ_CP006723_6	6.1\|2180927\|36\|NZ_CP006723\|CRISPRCasFinder	2180927-2180962	36	NZ_CP020413	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence	150746-150781	8	0.778
NZ_CP006723_9	9.4\|3203195\|34\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203195-3203228	34	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	253917-253950	11	0.676
NZ_CP006723_9	9.4\|3203195\|34\|NZ_CP006723\|PILER-CR,CRISPRCasFinder,CRT	3203195-3203228	34	NZ_CP035396	Bacillus subtilis strain SRCM103697 plasmid unnamed1, complete sequence	69054-69087	11	0.676

1. spacer 9.14|3203908|34|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 0, identity: 1.0

gaatacaacctcttcaaaaaagaggaaccggcgt	CRISPR spacer
gaatacaacctcttcaaaaaagaggaaccggcgt	Protospacer
**********************************

2. spacer 9.14|3203908|34|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 0, identity: 1.0

gaatacaacctcttcaaaaaagaggaaccggcgt	CRISPR spacer
gaatacaacctcttcaaaaaagaggaaccggcgt	Protospacer
**********************************

3. spacer 9.2|3203049|37|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 1, identity: 0.973

gatcaagggcgaaaacttccggcggaaattacgacgg	CRISPR spacer
gatcaagagcgaaaacttccggcggaaattacgacgg	Protospacer
*******.*****************************

4. spacer 9.2|3203049|37|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 1, identity: 0.973

gatcaagggcgaaaacttccggcggaaattacgacgg	CRISPR spacer
gatcaagagcgaaaacttccggcggaaattacgacgg	Protospacer
*******.*****************************

5. spacer 9.11|3203694|36|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to KF114877 (Leptospira phage LnoZ_CZ214, complete genome) position: , mismatch: 2, identity: 0.944

attagttcggattcattgagttcaaagtctcttccc	CRISPR spacer
attagttcggattcattgagttcaaagttttttccc	Protospacer
****************************.*.*****

6. spacer 6.1|2180927|36|NZ_CP006723|CRISPRCasFinder matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.917

gaatgccgatccttagagaggcatttgctgagtttt	CRISPR spacer
gaatgccgatccttagagaggcattcgctgagttgc	Protospacer
*************************.******** .

7. spacer 6.1|2180927|36|NZ_CP006723|CRISPRCasFinder matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.917

gaatgccgatccttagagaggcattt-gctgagtttt	CRISPR spacer
gaatgccgatccttagagaggtatttcactgagttt-	Protospacer
*********************.**** .********

8. spacer 10.1|3204316|35|NZ_CP006723|CRISPRCasFinder matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 3, identity: 0.914

caacgtttcgcgggaccttgattccttcggagcga	CRISPR spacer
ccgtgtttcgcgggaccttgattccttcggagcga	Protospacer
* ..*******************************

9. spacer 10.1|3204316|35|NZ_CP006723|CRISPRCasFinder matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 3, identity: 0.914

caacgtttcgcgggaccttgattccttcggagcga	CRISPR spacer
ccgtgtttcgcgggaccttgattccttcggagcga	Protospacer
* ..*******************************

10. spacer 11.3|3204719|36|NZ_CP006723|CRISPRCasFinder matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 3, identity: 0.917

atttgactctgcaaaacttttgcctcaaattcagga	CRISPR spacer
atttgactctgcaaaacttttgccgcaaattcgaga	Protospacer
************************ *******..**

11. spacer 9.4|3203195|34|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to MN693402 (Marine virus AFVG_25M260, complete genome) position: , mismatch: 7, identity: 0.794

cgaaaagaatttttaacaaaaactctatttaaag	CRISPR spacer
agtaaagaaattttaacaaaaactatattataaa	Protospacer
 * ****** ************** ****  **.

12. spacer 6.1|2180927|36|NZ_CP006723|CRISPRCasFinder matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

gaatgccgatccttagagaggcatttgctgagtttt	CRISPR spacer
tgccgatgatccttagaagggcatttgctgagtttt	Protospacer
 . .* .**********..*****************

13. spacer 9.4|3203195|34|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 11, identity: 0.676

cgaaaagaatttttaacaaaaactctatttaaag	CRISPR spacer
gagctgttattttaaacaaaaacgctatttaaat	Protospacer
 ..  .  ***** ********* *********

14. spacer 9.4|3203195|34|NZ_CP006723|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035396 (Bacillus subtilis strain SRCM103697 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

cgaaaagaa-------tttttaacaaaaactctatttaaag	CRISPR spacer
-------agccttctcttttcaacaaaaattctatttaaaa	Protospacer
       *.       ****.********.**********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1024360 : 1037686

Leptospira_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045191495.1\|1024360_1024984_-	tetratricopeptide repeat protein	S5VKQ0	Leptospira_phage	2.4e-50	57.0
WP_082286932.1\|1024993_1026295_-	hypothetical protein	S5VKK9	Leptospira_phage	2.4e-222	86.4
WP_045191500.1\|1026360_1027245_-	hypothetical protein	S5VSU6	Leptospira_phage	1.3e-134	81.3
WP_082286921.1\|1027548_1034373_+	hypothetical protein	S5W9E6	Leptospira_phage	0.0e+00	73.3
WP_000116595.1\|1034819_1035371_-	AraC family transcriptional regulator	S5WIW9	Leptospira_phage	2.5e-27	50.4
WP_000861790.1\|1035487_1035880_+	hypothetical protein	NA	NA	NA	NA
WP_000023580.1\|1036152_1036764_+	hypothetical protein	S5VXZ7	Leptospira_phage	2.4e-39	44.4
WP_000461269.1\|1036780_1037686_+	hypothetical protein	S5VTH2	Leptospira_phage	5.9e-18	31.2

DBSCAN-SWA_2

2656017 : 2665464

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000842260.1\|2656017_2656902_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.8e-97	60.3
WP_000723086.1\|2656902_2657952_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.9e-94	51.2
WP_000642156.1\|2657948_2658869_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_001159758.1\|2658872_2659433_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.5e-45	52.9
WP_000854003.1\|2659628_2661377_-	glycosyltransferase	A0A0F7L2F7	uncultured_marine_virus	7.7e-06	33.3
WP_000282880.1\|2662101_2662923_-	glycosyltransferase	A0A0F7L2F7	uncultured_marine_virus	2.4e-10	30.0
WP_000560752.1\|2663432_2664230_-	glycosyltransferase	A0A0F7L2F7	uncultured_marine_virus	2.1e-06	35.6
WP_000575178.1\|2664372_2665464_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2P1ELT3	Moumouvirus	3.1e-37	31.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP006727

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006727_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006727_1

2932-3032

Orphan

Consensus_repeat	Method
AATTACCTCTGATGCCGTCAGGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006727_1

>merge|NZ_CP006727|1|2932-3032|CRISPRCasFinder
AATTACCTCTGATGCCGTCAGGCGTTGAACACTTTATTACTGTAATTGATCTGAAGATTATCTTTGATCAAAAACAAATTACCTCTGATGCCGTTAGGCGT

>NZ_CP006727|1|1|2932-3032|CRISPRCasFinder
AATTACCTCTGATGCCGTCAGGCGT	TGAACACTTTATTACTGTAATTGATCTGAAGATTATCTTTGATCAAAAACA
AATTACCTCTGATGCCGTTAGGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006727.1\|WP_045193868.1\|1813_2527_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP006727.1\|WP_000763625.1\|5352_6003_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319261
NZ_CP006727.1\|WP_000136728.1\|767_1400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_020784160.1\|5040_5223_-\|addiction-module-toxin,-HicA-family	unknown	unknown	gnl\|CDD\|377942
NZ_CP006727.1\|WP_001103503.1\|3701_4076_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350253
NZ_CP006727.1\|WP_045193788.1\|3055_3331_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_000160625.1\|6529_6757_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_001045101.1\|4072_4279_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|198034
NZ_CP006727.1\|WP_045193796.1\|6108_6549_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_000401248.1\|3462_3687_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_000626853.1\|4618_5041_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP006727.1\|WP_000039773.1\|4302_4605_-\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|274228

Protein	Function_ID	Function_description	E-value
NZ_CP006727.1\|WP_045193868.1\|1813_2527_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	1.39904e-06
NZ_CP006727.1\|WP_000763625.1\|5352_6003_-\|hypothetical-protein	gnl\|CDD\|319261	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain. archaeal pNOB8 ParB acts in a plasmid partitioning system made up of 3 parts: AspA, ParA motor protein, and ParB, which links ParA to the protein-DNA superhelix. As demonstrated in Sulfolobus, AspA spreads along DNA, which allows ParB binding, and links to the Walker-motif containing ParA motor protein. The Sulfolobus ParB C-terminal domain resembles eukaryotic segregation protein CenpA, and other histones. This family is related to the N-terminal domain of ParB (Spo0J in Bacillus subtilis), a DNA-binding component of the prokaryotic parABS partitioning system and related proteins.	1.46784e-10
NZ_CP006727.1\|WP_000039773.1\|4302_4605_-\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	3.45795e-28
NZ_CP006727.1\|WP_000626853.1\|4618_5041_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	4.72407e-14
NZ_CP006727.1\|WP_001103503.1\|3701_4076_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350253	cd18686, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.36339e-68
NZ_CP006727.1\|WP_001045101.1\|4072_4279_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|198034	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain. This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA-binding activity in this AbrB homologue requires hexamerisation. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.	1.06595e-06
NZ_CP006727.1\|WP_020784160.1\|5040_5223_-\|addiction-module-toxin,-HicA-family	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	8.16109e-16

>NZ_CP006727.1|WP_045193868.1|1813_2527_+|helix-turn-helix-domain-containing-protein
MEENYVGEFIPRAVINTKLSRGLRDLLAKITLLDIAGRCEGRNGCYAGNEYLATCLGMAATTIAKYISRLRKAGYIEQVSFDGRVRVIRSTLHDAVVMERAQYKISKTALANNPSQPRTNGQDRGVQQGRAAWDNRSVAVRTKEENKKTLNVSGPQKNKFEPTWNGLLDWSKGRITPSSYRTLENTKVNLNSNQLTVYSPVSKSLSIIISKYFSEEVKNKVDVNFSEVGIGEVKNVA
>NZ_CP006727.1|WP_000136728.1|767_1400_+|hypothetical-protein
MTEKKLSRQERIERAMGEEHAGSEEVVVQNNSLVITDPIAEKILTLAETADNQVRNAIRSYISIGKMLKTQRDSMPHGKFLKWFEKYIGPNSGRDHSFTIRMGYRYIEYAEDEEYVLSLGQISQRKILVALKEKREIAKATKTLNEDSPKARKLKAESIRQRKHAGEKISKKEAEFVLDYLTAIRKEKEAKFSLELQSMDEEIKLFSGQI
>NZ_CP006727.1|WP_045193788.1|3055_3331_-|hypothetical-protein
MAPKSQEDKKMKTATFQSRLKNLEKKYLDWCAKAYHYNSDDYSRHESLATGRIFFFKKSNTIVENCFYNGPTAYKTSTAYLKYLNQKNEKP
>NZ_CP006727.1|WP_000401248.1|3462_3687_-|hypothetical-protein
MEHSKVEPIDQVESTVAECRKILIEYIRSSGTLRQIEKWTKKSNGNIANYINDKKKVHVETLIKIAKQIRDNKE
>NZ_CP006727.1|WP_001103503.1|3701_4076_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MNVVDSSGWLEYFAETKRAEYFAGAIEKTESLLVPVITLYEVFKKILLERGEDNALRAIAHMQQNKVVGLDASLAITAAKLSCDHKMPMADSIILATARQYNAILWTQDDDFKGLHGVNFFPKK
>NZ_CP006727.1|WP_001045101.1|4072_4279_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MNKVIISPKYQIVIPKEIREKTGLKVGGHLEIIHYGNRIELIPIEPIKKLKGFLKGMDTKIEREGDRV
>NZ_CP006727.1|WP_000039773.1|4302_4605_-|HigA-family-addiction-module-antidote-protein
MSKKYNPHPGAILKNYLDEIEVSQYRLAIETGIPRSNLSNLVLGKRSITPEIALRLGKFFGQTAKFWLNLQNTYDLFEAQNDHGKEIEKIRKYSLSIDKS
>NZ_CP006727.1|WP_000626853.1|4618_5041_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MISYSAILTEDKVEGGYTVEFPDLPGCITEGDTLEEALAFAKDALSLYLESIDMRKLPIPQPSKRTGKNIYLIEPDKNVGFAIWLKLNREEQGLSQAKVANRLGIAQQTYQRFENPRKTNPTLAQIVKLENLFGREILKP
>NZ_CP006727.1|WP_020784160.1|5040_5223_-|addiction-module-toxin,-HicA-family
MNAKQLIRLLEDNGFEFEREGKGSHAIYKKGTITVTVPIHGKKELKLKTLNAILKTAGLK
>NZ_CP006727.1|WP_000763625.1|5352_6003_-|hypothetical-protein
MADIQKFKPTKLYYENPEKLIIVEDQPFALLQGEQYEELRESIKRNGILHPVYCRQDYTVLSGSNRVVIAQELGILVPTIRFQVDMDPDIEQELVYHLNTVGRQVSPADRKRLVFTRFKNQIGKSGGLKAIHQLTGIHISTLKQYSVEFQNKKKFENIGISEEDRKAGIRLYLKWDKFRIAENEAKRERQKLERQLSELAPLSYWTKEGWKKKVKS
>NZ_CP006727.1|WP_045193796.1|6108_6549_-|hypothetical-protein
MDRIVYKSLKNYKYELLLPYWFQTDIKTEKQIRIETTGIKTFVSLDIDGLLKISAGYAWDGPSGPTFDTKSFMRGSLVHDALYQLMREEKLDHIKYRDTADQILKKICLEDGMGAFRAAYVYRFVSWFGGSSAKPTDETKEYILAP
>NZ_CP006727.1|WP_000160625.1|6529_6757_-|hypothetical-protein
MTKHKKTFWKYLSDNVTKGRISTILGVLIVIGAIVSVFIDKADWSQACLAIAAGFAAIGFIGKNKDGESNGSNSL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP006727_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006727_2

51360-51444

Orphan

Consensus_repeat	Method
AATATTAACAAAACGTTAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006727_2

>merge|NZ_CP006727|2|51360-51444|CRISPRCasFinder
AATATTAACAAAACGTTAATTTTGTCTCGAATTTGCGGCAAAAGTTTTGCAGAGTCAAATCAAAAATTAACAAAACGTTAATTTT

>NZ_CP006727|2|2|51360-51444|CRISPRCasFinder
AATATTAACAAAACGTTAATTTT	GTCTCGAATTTGCGGCAAAAGTTTTGCAGAGTCAAATCA
AAAATTAACAAAACGTTAATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006727.1\|WP_061237886.1\|49650_49968_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_000836924.1\|46209_46458_-\|NINE-protein	unknown	unknown	gnl\|CDD\|222840
NZ_CP006727.1\|WP_000102852.1\|44800_46189_-\|DUF4041-domain-containing-protein	unknown	unknown	gnl\|CDD\|379092
NZ_CP006727.1\|WP_082271351.1\|43963_44209_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_033108275.1\|47469_48243_-\|DNA-processing-protein-DprA	unknown	unknown	gnl\|CDD\|376794
NZ_CP006727.1\|WP_045193866.1\|53987_54305_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_045193882.1\|48989_49604_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_001095807.1\|44311_44707_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP006727.1\|WP_045193859.1\|50371_51259_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379902
NZ_CP006727.1\|WP_000384931.1\|48661_48886_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NZ_CP006727.1\|WP_002100729.1\|52403_52913_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_045193861.1\|51466_51892_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378971
NZ_CP006727.1\|WP_002093287.1\|43446_43650_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006727.1\|WP_025179482.1\|54342_54555_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006727.1\|WP_000836924.1\|46209_46458_-\|NINE-protein	gnl\|CDD\|222840	PHA01886, PHA01886, TM2 domain-containing protein.	2.2676e-16
NZ_CP006727.1\|WP_000102852.1\|44800_46189_-\|DUF4041-domain-containing-protein	gnl\|CDD\|379092	pfam13250, DUF4041, Domain of unknown function (DUF4041). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and viruses, and is approximately 60 amino acids in length. The family is found in association with pfam10544.	6.15257e-19
NZ_CP006727.1\|WP_001095807.1\|44311_44707_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.03789e-05
NZ_CP006727.1\|WP_045193859.1\|50371_51259_-\|hypothetical-protein	gnl\|CDD\|379902	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase. HisKA_7TM is an N-terminal region consisting of seven transmembrane domains found in Archaea and some bacteria. It is always found associated with histidine kinase.	1.44567e-06
NZ_CP006727.1\|WP_000384931.1\|48661_48886_-\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.30039e-19
NZ_CP006727.1\|WP_045193861.1\|51466_51892_+\|DNA-binding-protein	gnl\|CDD\|378971	pfam12844, HTH_19, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.	0.00540742
NZ_CP006727.1\|WP_033108275.1\|47469_48243_-\|DNA-processing-protein-DprA	gnl\|CDD\|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	3.88446e-59

>NZ_CP006727.1|WP_045193859.1|50371_51259_-|hypothetical-protein
MAIAVLVSFFIFWLGIYVYRNSIQSESAQKWFLLFALSIGTWVFILGVRNVIMLEWREFLHDLTLIPILFTPYLFFRFVKSLFNPQYKQSRVGLAINTALITYFLYCAITRQFVQLLDTVNFAYKPTYKYHIFIIYCATYFIGSLGILWLEVRRYQQHKIQAILITTGTLIAVAICVLFVYILPLQGIFLAPYSAIGVAIAGLFFAVAALLGNALITNATIESGDPVPRFSRTVVLLVVVIYKYVDPVEFLILAYKLEKTNKRLWGLFRALYLEDVDIGAHIQKTAKEITMESNL
>NZ_CP006727.1|WP_061237886.1|49650_49968_-|hypothetical-protein
MSVIASLGERIIAKSSNILIIAIVTFGIVSSISHLAGKQTNAIFDVGFSALIDFAKKSNPIEAVGYIFGVFCIFMELSKRNYGPIILRDSALNLQNARKGSIQID
>NZ_CP006727.1|WP_045193882.1|48989_49604_-|hypothetical-protein
MENGIGLMLFFILGLLFFSWNVLWKGYMVDRTCEDLFKLRDRLFEFGLKQNGINFSDPAYQSFEAIINGTIRFTHRISFLRYLIFVFLVNLFMSRYEVFSSLRLELDQGFKKLDPVAQANFKPLLEEYERIVISHLVFKSFFLLLFTSSVGIVYSIMRFQTFAAEGISKGYQNFRVKVRAIYNGPIKNIQYNAIQEMNAAVSVV
>NZ_CP006727.1|WP_000384931.1|48661_48886_-|DUF433-domain-containing-protein
MDYKNRLSANPNVMLGKPVIKGTRITVELILERLGEGLSIEEILTATPGIVRDDILACLSYSSEVISRESLLAS
>NZ_CP006727.1|WP_033108275.1|47469_48243_-|DNA-processing-protein-DprA
MMGTMATARKRNSNRSSGERLLFDFQKSKEELEQEALEKEYYDYLFRIDAKVTRFAFDSVLNNSKSSGAIPLFYKGDSTLLRRRAVSIVGTRNPSKKGQETAAAITEAVIKLGFVVVSGLAKGIDSVAHSTALVAKGSTIAVLGTPIHKIYPAENKFLAEEISENGLILSMNLPHEEKGTYLFPRRNRLMALMTEATIVVEAGETSGVIHQAAECKRLHKKLIFSKSLVEQKYDWVSKFINSGALVAESSNHLKQIL
>NZ_CP006727.1|WP_000836924.1|46209_46458_-|NINE-protein
MKSKGVAYVLWLFSFFGWFGLHRFYIGKVGTGILWIFTGGLFGLGSLYDLFSLGGQVDAVNTTKELKEIRTATLANISNKNI
>NZ_CP006727.1|WP_000102852.1|44800_46189_-|DUF4041-domain-containing-protein
MSTFFALVILFVLFCFPFLLYFYYKKVKQFNELYNKYKDIIDLEKHKSNVINETDDLIRERNRKLNEIQVEIDQLRKDYLEKRQLFENLIREVAIYEDKSEIISHGLYKPHFDFDTSDEYKEALLEIRESCKEMIKSETAASASVAWHVNGSYTEGKKQTKHYIKLMLRAFNGECDAMIADVRWNNISKMEERIAKVHDAINKLGETHYIKITNDYYRLKLQELQLTHEYRDKIYQEKQEQKRIQEQIREEEKVQREIEKALRDSEDEEKRYTKALEQAKKELEKAQGEQLQLVQAKMEALQKELENAQSAKQRALSLAQQTKVGHVYVISNIGSFGESVFKVGMTRRLDPMDRVKELGDASVPFEFDVHAIVYSENAPELEKLLHKNFDHKRVNLVNNRKEFFEITLDEIEQIVKKHNGDVQFTKAAEAREYRESMKIKLNRQNTNVSTMSNVLDSIPQSI
>NZ_CP006727.1|WP_001095807.1|44311_44707_+|helix-turn-helix-transcriptional-regulator
MNTPGERIKYIRTEGTGQKISQDEFAKSIGISQELLSQLENNKRDLTDRITIVIELKYGFRKEWTHKGIGPEKNTTPLNVTEAEKELIEKGIILSRKIINNPTLCEIAEILVKIQPEDLKKIKTIIETFLK
>NZ_CP006727.1|WP_082271351.1|43963_44209_-|hypothetical-protein
MSVAKNQGRIWPKGVMSREQIKRELQFLNKTYDEISHETGISYDVVRGTVAGRKRNAVVLQYLTNLGIKHGRTPSPSRKAS
>NZ_CP006727.1|WP_002093287.1|43446_43650_-|hypothetical-protein
MDTEAADREMLIQYIRQFVDSQRGNQKLLAEASSIPQNKISSLIRERSFSPGMDTIIKLAETIQNIQ
>NZ_CP006727.1|WP_045193861.1|51466_51892_+|DNA-binding-protein
MRHKDKGQGKRLGVILEETNLLSKELAAACDAFPEVISLYLSNKRDIPFDLAYKIMLAYGYSPFWLIFGDGEKFVSKDLLESLTQNQIETIYEIDRNRVFNRRLDESGFRPMVERLLELDDDRERKIFLSIFDRFFPKGSE
>NZ_CP006727.1|WP_002100729.1|52403_52913_-|hypothetical-protein
MIEIGKVVLFGKIWRHVNGHSLKIHYLIFEQKGPEDESGYAAVALELGLFSWGIDEIKSKSNLFQHIEEYLSSLKENEGLYELLKNTQLEEYWGIYRQLLFLCGDPETDKLRAVSKENEELKNSNSIVEEKFRESEERNSELKVSLSMLQGLYENLKKEKSSVDTQVAS
>NZ_CP006727.1|WP_045193866.1|53987_54305_-|hypothetical-protein
MITHTMIIAQEAKLEKFCLTYINQACEKFGKQSLSQQIASEPFIQKHGSGDQYLDIMLGRYYESKRHRKSNIDKLLEICGRISKLDNTPLTGNMSHSYHTKDKTN
>NZ_CP006727.1|WP_025179482.1|54342_54555_-|hypothetical-protein
MKTATIEIKESYKSQRLPVYAKDRDGRQLPTHINLNQHGEVFASHAEKVGNCGMERADLLQRDWTKKNKI

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006727_1	1.1\|2957\|51\|NZ_CP006727\|CRISPRCasFinder	2957-3007	51	NZ_CP006727	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence	2957-3007	0	1.0
NZ_CP006727_2	2.1\|51383\|39\|NZ_CP006727\|CRISPRCasFinder	51383-51421	39	NZ_CP006727	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence	51383-51421	0	1.0

1. spacer 1.1|2957|51|NZ_CP006727|CRISPRCasFinder matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 0, identity: 1.0

tgaacactttattactgtaattgatctgaagattatctttgatcaaaaaca	CRISPR spacer
tgaacactttattactgtaattgatctgaagattatctttgatcaaaaaca	Protospacer
***************************************************

2. spacer 2.1|51383|39|NZ_CP006727|CRISPRCasFinder matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 0, identity: 1.0

gtctcgaatttgcggcaaaagttttgcagagtcaaatca	CRISPR spacer
gtctcgaatttgcggcaaaagttttgcagagtcaaatca	Protospacer
***************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10442

Leptospira_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000136728.1\|767_1400_+	hypothetical protein	NA	NA	NA	NA
WP_045193868.1\|1813_2527_+	helix-turn-helix domain-containing protein	S5VSV6	Leptospira_phage	1.9e-19	33.1
WP_045193786.1\|2578_2959_+	hypothetical protein	NA	NA	NA	NA
WP_045193788.1\|3055_3331_-	hypothetical protein	NA	NA	NA	NA
WP_000401248.1\|3462_3687_-	hypothetical protein	NA	NA	NA	NA
WP_001103503.1\|3701_4076_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001045101.1\|4072_4279_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_000039773.1\|4302_4605_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	2.3e-11	44.9
WP_000626853.1\|4618_5041_-	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CYJ8	Paenibacillus_phage	4.7e-10	54.9
WP_020784160.1\|5040_5223_-	addiction module toxin, HicA family	NA	NA	NA	NA
WP_000763625.1\|5352_6003_-	hypothetical protein	NA	NA	NA	NA
WP_045193796.1\|6108_6549_-	hypothetical protein	I3UMI9	Colwellia_phage	7.9e-08	33.9
WP_000160625.1\|6529_6757_-	hypothetical protein	NA	NA	NA	NA
WP_000192218.1\|6783_7284_-	DUF882 domain-containing protein	A0A248SJJ9	Salicola_phage	7.3e-18	44.5
WP_045193872.1\|7280_7886_-	hypothetical protein	NA	NA	NA	NA
WP_045193798.1\|7980_8706_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_045193800.1\|8705_10442_-	hypothetical protein	A0A222YWB9	Escherichia_phage	1.8e-07	37.3

DBSCAN-SWA_2

14738 : 18212

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045193873.1\|14738_18212_-	hypothetical protein	A0A218MKN2	uncultured_virus	9.0e-14	26.9

DBSCAN-SWA_3

23643 : 28520

Vibrio_phage(33.33%)

terminase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045193819.1\|23643_24774_-\|coat	coat protein	H9EB33	Vibrio_phage	6.9e-40	33.4
WP_002101161.1\|24786_25596_-	hypothetical protein	NA	NA	NA	NA
WP_002101158.1\|25616_27146_-	hypothetical protein	J9Q7R1	Salmonella_phage	2.7e-31	24.0
WP_045193823.1\|27200_28520_-\|terminase	terminase	S5VY04	Leptospira_phage	1.1e-52	32.5

DBSCAN-SWA_4

33196 : 34132

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045193878.1\|33196_34132_-	phage Gp37/Gp68 family protein	A0A142K7I8	Mycobacterium_phage	3.6e-66	49.5

DBSCAN-SWA_5

39945 : 40956

Gordonia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000144791.1\|39945_40956_-	ATP-binding protein	A0A160DER9	Gordonia_phage	8.9e-47	42.2

DBSCAN-SWA_6

44800 : 51259

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000102852.1\|44800_46189_-	DUF4041 domain-containing protein	Q5G8X0	Enterobacteria_phage	2.8e-59	53.2
WP_000836924.1\|46209_46458_-	NINE protein	A0A240F358	Aeromonas_phage	3.9e-12	51.5
WP_033108275.1\|47469_48243_-	DNA-processing protein DprA	S6BFL3	Thermus_phage	3.2e-28	35.0
WP_000384931.1\|48661_48886_-	DUF433 domain-containing protein	NA	NA	NA	NA
WP_045193882.1\|48989_49604_-	hypothetical protein	NA	NA	NA	NA
WP_061237886.1\|49650_49968_-	hypothetical protein	NA	NA	NA	NA
WP_045193859.1\|50371_51259_-	hypothetical protein	S5VYC6	Leptospira_phage	5.8e-18	27.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP006725

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 13808

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000691797.1\|0_753_+	AAA family ATPase	Q9G093	Leptospira_phage	3.0e-23	34.5
WP_000818557.1\|736_1366_+	DUF3102 domain-containing protein	NA	NA	NA	NA
WP_045193664.1\|1835_3278_+	DNA-binding protein	S5W9F7	Leptospira_phage	1.0e-176	68.9
WP_045193666.1\|3460_4084_-	tetratricopeptide repeat protein	S5VKQ0	Leptospira_phage	1.8e-50	57.0
WP_082285989.1\|4093_5395_-	hypothetical protein	S5VKK9	Leptospira_phage	1.2e-221	86.1
WP_045193673.1\|5460_6345_-	hypothetical protein	S5VSU6	Leptospira_phage	3.1e-136	82.0
WP_045193676.1\|6779_13808_+	type IV secretion protein Rhs	S5VY91	Leptospira_phage	8.1e-280	32.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage