CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LN626917	Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1 chromosome I	10 crisprs	DinG,DEDDh,cas3,csa3,WYL	3	0	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LN626917_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_1

677665-677764

Orphan

Consensus_repeat	Method
AAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN626917_1

>merge|NZ_LN626917|1|677665-677764|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGGACTAAAGGAATACAGTTGATTGCTAATGCACCAACAGCAAAAGAGCCCCTAATTAATAAATTAAAAGGGG

>NZ_LN626917|1|1|677665-677764|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGG	ACTAAAGGAATACAGTTGATTGCTAATGCACCAACAGCAA
AAGAGCCCCTAATTAATAAATTAAAAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_000833480.1\|675038_675512_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|226072
NZ_LN626917.1\|WP_000663016.1\|688224_689283_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
NZ_LN626917.1\|WP_000367064.1\|677781_679002_+\|sugar-efflux-transporter	unknown	unknown	gnl\|CDD\|341024
NZ_LN626917.1\|WP_000180987.1\|686470_687985_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_LN626917.1\|WP_001129756.1\|671477_673628_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_LN626917.1\|WP_045178685.1\|690535_691453_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_LN626917.1\|WP_000865619.1\|675864_676509_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|225188
NZ_LN626917.1\|WP_000120368.1\|667399_668407_+\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_LN626917.1\|WP_000589241.1\|685500_686478_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_LN626917.1\|WP_000525101.1\|681603_683487_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_LN626917.1\|WP_000731642.1\|668993_669791_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_LN626917.1\|WP_000687413.1\|676625_677492_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_LN626917.1\|WP_000158021.1\|678998_679466_+\|DUF456-domain-containing-protein	unknown	unknown	gnl\|CDD\|225395
NZ_LN626917.1\|WP_000197262.1\|689441_689984_+\|5'-3'-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
NZ_LN626917.1\|WP_000532966.1\|674322_675039_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_LN626917.1\|WP_001090984.1\|673773_674133_+\|HTH-type-transcriptional-regulator-SarX	unknown	unknown	gnl\|CDD\|130944
NZ_LN626917.1\|WP_045178681.1\|670151_670796_+\|Bax-inhibitor-1-family-protein	unknown	unknown	gnl\|CDD\|223742
NZ_LN626917.1\|WP_031788440.1\|691543_691645_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_000983677.1\|683498_685280_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_LN626917.1\|WP_031788497.1\|675603_675720_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_000833480.1\|675038_675512_+\|cupin-domain-containing-protein	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	9.47473e-74
NZ_LN626917.1\|WP_000663016.1\|688224_689283_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
NZ_LN626917.1\|WP_000367064.1\|677781_679002_+\|sugar-efflux-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.37741e-101
NZ_LN626917.1\|WP_000180987.1\|686470_687985_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.32308e-151
NZ_LN626917.1\|WP_001129756.1\|671477_673628_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.84296e-20
NZ_LN626917.1\|WP_045178685.1\|690535_691453_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.59884e-77
NZ_LN626917.1\|WP_000865619.1\|675864_676509_+\|DUF402-domain-containing-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	6.78593e-91
NZ_LN626917.1\|WP_000120368.1\|667399_668407_+\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	5.23541e-104
NZ_LN626917.1\|WP_000589241.1\|685500_686478_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	3.25092e-154
NZ_LN626917.1\|WP_000525101.1\|681603_683487_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_LN626917.1\|WP_000731642.1\|668993_669791_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.45836e-40
NZ_LN626917.1\|WP_000687413.1\|676625_677492_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.18267e-39
NZ_LN626917.1\|WP_000158021.1\|678998_679466_+\|DUF456-domain-containing-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	8.41098e-45
NZ_LN626917.1\|WP_000197262.1\|689441_689984_+\|5'-3'-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	3.14113e-108
NZ_LN626917.1\|WP_000532966.1\|674322_675039_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	8.8628e-136
NZ_LN626917.1\|WP_001090984.1\|673773_674133_+\|HTH-type-transcriptional-regulator-SarX	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	8.17439e-23
NZ_LN626917.1\|WP_045178681.1\|670151_670796_+\|Bax-inhibitor-1-family-protein	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	6.31004e-32
NZ_LN626917.1\|WP_000983677.1\|683498_685280_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0

>NZ_LN626917.1|WP_000687413.1|676625_677492_+|LysR-family-transcriptional-regulator
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMTSFVEEPKA
>NZ_LN626917.1|WP_000865619.1|675864_676509_+|DUF402-domain-containing-protein
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKIHQKPQNKTNFEKSKQIKPKQYNQTKNHQQQKKN
>NZ_LN626917.1|WP_031788497.1|675603_675720_+|hypothetical-protein
MLQLILMKIALNDFEKDKSVLFIFLKNHFYEEMCVLSN
>NZ_LN626917.1|WP_000833480.1|675038_675512_+|cupin-domain-containing-protein
MKSAEQWIDELQLESHPEGGFYRETIREVLKDGRRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYAVPKGTIFASSIEISNTYSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
>NZ_LN626917.1|WP_000532966.1|674322_675039_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK
>NZ_LN626917.1|WP_001090984.1|673773_674133_+|HTH-type-transcriptional-regulator-SarX
MNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNDDDISKFNALFEDVEQFLNI
>NZ_LN626917.1|WP_001129756.1|671477_673628_+|helix-turn-helix-transcriptional-regulator
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPLNDADVRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKFNKSIMLNPEPLVGGMAQEVKEVILNYIDHYKNHLTDVIHIDEDKFEIPKLFQTVIQINTYTEMKLVFLEGLFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFTIIKTIIESNLKIAFNINDIETTYYVEEAFMNVIRQLSPNEINHHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFDKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGESDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKERDLSNSAPLIYKTLSALYHNFDGFGLNIFDNHQTFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNILNDKYLIVIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSNNSLNINVTFNALYIIKIGKK
>NZ_LN626917.1|WP_045178681.1|670151_670796_+|Bax-inhibitor-1-family-protein
MSQNTNHSYYHQNQHAQAISKVWLYFMYYWIIFGIACYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>NZ_LN626917.1|WP_000731642.1|668993_669791_-|LysM-peptidoglycan-binding-domain-containing-protein
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNTSNTSPQAGSASSHTVQAGESLNIIANRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>NZ_LN626917.1|WP_000120368.1|667399_668407_+|inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLAGLLFYILNLFF
>NZ_LN626917.1|WP_000367064.1|677781_679002_+|sugar-efflux-transporter
MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLQTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>NZ_LN626917.1|WP_000158021.1|678998_679466_+|DUF456-domain-containing-protein
MTIVLWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQASLGHKSLKKQQ
>NZ_LN626917.1|WP_000525101.1|681603_683487_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MGMEAYKIEHLNKSYADKIIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAERELTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQHSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>NZ_LN626917.1|WP_000983677.1|683498_685280_+|DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>NZ_LN626917.1|WP_000589241.1|685500_686478_+|ABC-transporter-ATP-binding-protein
MIKFKNVTKRYDKHVAVDNISFDINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQQIEVLYQHLSESERVIVMQEDGVGQYVIDRKDIFKYLSQKKEVAQHD
>NZ_LN626917.1|WP_000180987.1|686470_687985_+|ABC-transporter-permease/substrate-binding-protein
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYDQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKIKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>NZ_LN626917.1|WP_000663016.1|688224_689283_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLDGILKEVNDDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPSHVPVLIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEHFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNGKMLEVLSNFKYE
>NZ_LN626917.1|WP_000197262.1|689441_689984_+|5'-3'-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>NZ_LN626917.1|WP_045178685.1|690535_691453_-|diacylglycerol-kinase-family-lipid-kinase
MENKYTHGVLFYHEHSGLKNINKGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKAKDYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILSANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPTMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>NZ_LN626917.1|WP_031788440.1|691543_691645_+|hypothetical-protein
MVITEIDVYRVGRENIVIVVYNEHIKFLFILIS

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Crispr_ID: NZ_LN626917_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_2

723190-723274

Unclear

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_LN626917_2

>merge|NZ_LN626917|2|723190-723274|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>NZ_LN626917|2|2|723190-723274|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_000538141.1\|724795_725446_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
NZ_LN626917.1\|WP_000662687.1\|727940_730787_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_LN626917.1\|WP_000258151.1\|713027_714083_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_LN626917.1\|WP_045178688.1\|716261_717344_+\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
NZ_LN626917.1\|WP_045178695.1\|733678_735118_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_LN626917.1\|WP_000958224.1\|731397_732330_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_LN626917.1\|WP_000638419.1\|725442_725679_+\|CsbA-family-protein	unknown	unknown	gnl\|CDD\|227234
NZ_LN626917.1\|WP_001057973.1\|717336_718011_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_LN626917.1\|WP_001791369.1\|721630_721729_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_000460983.1\|711639_712710_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_LN626917.1\|WP_000508984.1\|732335_733178_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_LN626917.1\|WP_000192947.1\|714246_714888_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_LN626917.1\|WP_000686342.1\|715031_715898_+\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_LN626917.1\|WP_045178689.1\|718071_718644_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NZ_LN626917.1\|WP_098827697.1\|721903_723014_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_LN626917.1\|WP_045178691.1\|723782_724622_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_LN626917.1\|WP_000134963.1\|735184_736120_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_LN626917.1\|WP_000506536.1\|719057_721589_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_LN626917.1\|WP_001224791.1\|733185_733671_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_LN626917.1\|WP_000229253.1\|725947_727933_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_000538141.1\|724795_725446_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
NZ_LN626917.1\|WP_000662687.1\|727940_730787_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_LN626917.1\|WP_045178688.1\|716261_717344_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.6019e-178
NZ_LN626917.1\|WP_045178695.1\|733678_735118_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.0928e-06
NZ_LN626917.1\|WP_000958224.1\|731397_732330_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
NZ_LN626917.1\|WP_000638419.1\|725442_725679_+\|CsbA-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
NZ_LN626917.1\|WP_001057973.1\|717336_718011_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.20522e-50
NZ_LN626917.1\|WP_045178689.1\|718071_718644_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	7.6638e-38
NZ_LN626917.1\|WP_000508984.1\|732335_733178_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	6.12313e-120
NZ_LN626917.1\|WP_000460983.1\|711639_712710_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.2404e-45
NZ_LN626917.1\|WP_001224791.1\|733185_733671_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	7.57447e-30
NZ_LN626917.1\|WP_000192947.1\|714246_714888_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	7.46066e-72
NZ_LN626917.1\|WP_000686342.1\|715031_715898_+\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	9.17692e-120
NZ_LN626917.1\|WP_000258151.1\|713027_714083_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	2.69988e-87
NZ_LN626917.1\|WP_098827697.1\|721903_723014_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_LN626917.1\|WP_045178691.1\|723782_724622_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	9.19282e-42
NZ_LN626917.1\|WP_000134963.1\|735184_736120_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
NZ_LN626917.1\|WP_000506536.1\|719057_721589_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_LN626917.1\|WP_000229253.1\|725947_727933_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0

>NZ_LN626917.1|WP_098827697.1|721903_723014_+|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDGEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>NZ_LN626917.1|WP_001791369.1|721630_721729_+|hypothetical-protein
MLWEESFYFTSVKYFKKCEEVVKRCYVLSLKK
>NZ_LN626917.1|WP_000506536.1|719057_721589_+|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKSVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>NZ_LN626917.1|WP_045178689.1|718071_718644_+|ribosome-associated-translation-inhibitor-RaiA
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYLRKDGKYGLIQTSEQ
>NZ_LN626917.1|WP_001057973.1|717336_718011_+|ComF-family-protein
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKYLDQNEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFSKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>NZ_LN626917.1|WP_045178688.1|716261_717344_+|DEAD/DEAH-box-helicase
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPLENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNTETMIKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQYDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE
>NZ_LN626917.1|WP_000686342.1|715031_715898_+|DegV-family-protein
MKIAVMTDSTSYLSQDLIDKYNIQIAPLSVTFDDGKNFTESNEIAIEEFYNKMASSQTIPTTSQPAIGEWITKYEMLRDQGYTDIIVICLSSGISGSYQSSYQAGEMVEGVNVHAFDSKLAAMIEGCYVLRAIEMVEEGYEPQQIIDDLTNMREHTGAYLIVDDLKNLQKSGRITGAQAWVGTLLKMKPVLKFEDGKIIPEEKVRTKKRAIQTLEKKVLDIVKDFEEVTLFVINGDHFEDGQALYKKLQDDCPSAYQVAYSEFGPVVAAHLGSGGLGLGYVGRKIRLT
>NZ_LN626917.1|WP_000192947.1|714246_714888_-|YigZ-family-protein
MTQNIITVKKEHIIENVISKSRFIAHIKPVQNEDEAKAFIAAIKKEHKDATHNCSAYTIGPEMNIQKANDDGEPTGTAGVPMLDILKKLDVHNACVVVTRYFGGIKLGGGGLIRAYSGAVRDVIYDIGRVELREAVPCIVTLNYDQTGKFEYELASTHFMLRNQTYTDKVSYYIDVVKSDYEAFINFLNQMTAGNFDLTEETPKQLPFDIPTE
>NZ_LN626917.1|WP_000258151.1|713027_714083_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MVTLLLVAVTMIVSLTITPIVIAISKRLNLVDKPNFRKVHTKPISVMGGTVILFSFLIGIWIGHPIETEIKPLIIGAIIMYVLGLVDDIYDLKPYIKLAGQIAAALVVAFYGVTIDFISLPMGTTIHFGFLSIPITVIWIVAITNAINLIDGLDGLASGVSAIGLITIGFIAILQANIFITMICCVLLGSLIGFLFYNFHPAKIFLGDSGALMIGFIIGFLSLLGFKNITIIALFFPIVILAVPFIDTLFAMIRRVKKGQHIMQADKSHLHHKLLALGYTHRQTVLLIYSISILFSLSSIILYVSPPLGVVLMFVLIIFSIELIVEFTGLIDNNYRPILNLISRKSSHKEE
>NZ_LN626917.1|WP_000460983.1|711639_712710_-|GGDEF-domain-containing-protein
MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYLIHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLKQNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKSGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
>NZ_LN626917.1|WP_045178691.1|723782_724622_+|CHAP-domain-containing-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKTVKSPVRKASQAKKVVQQPVQQASKKVVVKQAPKQTVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTVAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>NZ_LN626917.1|WP_000538141.1|724795_725446_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>NZ_LN626917.1|WP_000638419.1|725442_725679_+|CsbA-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>NZ_LN626917.1|WP_000229253.1|725947_727933_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>NZ_LN626917.1|WP_000662687.1|727940_730787_+|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNINLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>NZ_LN626917.1|WP_000958224.1|731397_732330_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>NZ_LN626917.1|WP_000508984.1|732335_733178_+|prolipoprotein-diacylglyceryl-transferase
MGGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPGEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTRKVK
>NZ_LN626917.1|WP_001224791.1|733185_733671_+|acetyltransferase
MRKFLSKEYHRTNPLWHVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQILNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>NZ_LN626917.1|WP_045178695.1|733678_735118_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLKEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYNWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>NZ_LN626917.1|WP_000134963.1|735184_736120_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA

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Crispr_ID: NZ_LN626917_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_3

795881-795960

Orphan

Consensus_repeat	Method
CCGTCAGCTTCTGTGTTGGGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN626917_3

>merge|NZ_LN626917|3|795881-795960|CRISPRCasFinder
CCGTCAGCTTCTGTGTTGGGGCCCACCCCAACTTGCATTGCTTGTAAGCTGACTTTCCGTCAGCTTCTATGTTGGGGCCC

>NZ_LN626917|3|3|795881-795960|CRISPRCasFinder
CCGTCAGCTTCTGTGTTGGGGCCC	ACCCCAACTTGCATTGCTTGTAAGCTGACTTT
CCGTCAGCTTCTATGTTGGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_001798062.1\|794748_795627_+\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
NZ_LN626917.1\|WP_001006454.1\|804392_805643_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_LN626917.1\|WP_045178715.1\|802979_804287_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_LN626917.1\|WP_045178713.1\|800513_800708_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_LN626917.1\|WP_000255548.1\|789488_790106_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_LN626917.1\|WP_000150025.1\|791724_792441_+\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
NZ_LN626917.1\|WP_000589549.1\|793676_794033_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NZ_LN626917.1\|WP_001140696.1\|788834_789416_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_LN626917.1\|WP_000422908.1\|792523_793063_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_LN626917.1\|WP_000974455.1\|791154_791577_-\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_LN626917.1\|WP_000290491.1\|794190_794571_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_LN626917.1\|WP_001147955.1\|793212_793533_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_LN626917.1\|WP_000168845.1\|802120_802882_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_LN626917.1\|WP_001018965.1\|796216_796603_+\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
NZ_LN626917.1\|WP_001183862.1\|800941_801793_-\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
NZ_LN626917.1\|WP_000569884.1\|790261_790756_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
NZ_LN626917.1\|WP_000732338.1\|798872_799694_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_LN626917.1\|WP_000571209.1\|797141_798167_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_LN626917.1\|WP_000520233.1\|798159_798855_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_LN626917.1\|WP_001065804.1\|796595_796892_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_001798062.1\|794748_795627_+\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.81941e-75
NZ_LN626917.1\|WP_001006454.1\|804392_805643_+\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_LN626917.1\|WP_045178715.1\|802979_804287_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.9731e-135
NZ_LN626917.1\|WP_045178713.1\|800513_800708_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	3.37179e-07
NZ_LN626917.1\|WP_000255548.1\|789488_790106_-\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.86525e-61
NZ_LN626917.1\|WP_000150025.1\|791724_792441_+\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	7.88423e-148
NZ_LN626917.1\|WP_000589549.1\|793676_794033_+\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
NZ_LN626917.1\|WP_001140696.1\|788834_789416_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.48716e-48
NZ_LN626917.1\|WP_000422908.1\|792523_793063_+\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
NZ_LN626917.1\|WP_000974455.1\|791154_791577_-\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.40241e-61
NZ_LN626917.1\|WP_000290491.1\|794190_794571_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
NZ_LN626917.1\|WP_001147955.1\|793212_793533_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.63533e-24
NZ_LN626917.1\|WP_000168845.1\|802120_802882_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
NZ_LN626917.1\|WP_001018965.1\|796216_796603_+\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	1.24029e-35
NZ_LN626917.1\|WP_001183862.1\|800941_801793_-\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	1.10175e-76
NZ_LN626917.1\|WP_000569884.1\|790261_790756_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
NZ_LN626917.1\|WP_000732338.1\|798872_799694_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	5.3847e-113
NZ_LN626917.1\|WP_000571209.1\|797141_798167_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.26346e-169
NZ_LN626917.1\|WP_000520233.1\|798159_798855_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
NZ_LN626917.1\|WP_001065804.1\|796595_796892_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.8621e-13

>NZ_LN626917.1|WP_001798062.1|794748_795627_+|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLKDIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDDLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>NZ_LN626917.1|WP_000290491.1|794190_794571_+|glycine-cleavage-system-protein-GcvH
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>NZ_LN626917.1|WP_000589549.1|793676_794033_+|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>NZ_LN626917.1|WP_001147955.1|793212_793533_-|thioredoxin-family-protein
MQAIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>NZ_LN626917.1|WP_000422908.1|792523_793063_+|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>NZ_LN626917.1|WP_000150025.1|791724_792441_+|type-I-3-dehydroquinate-dehydratase
MTHVEVVATIAPQLYIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>NZ_LN626917.1|WP_000974455.1|791154_791577_-|organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDPDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>NZ_LN626917.1|WP_000569884.1|790261_790756_-|GNAT-family-N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>NZ_LN626917.1|WP_000255548.1|789488_790106_-|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPILQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>NZ_LN626917.1|WP_001140696.1|788834_789416_+|histidine-phosphatase-family-protein
MAKTLYLMRHGQTLFNFKGLIQGFGDSPLTELGIAQAQKARSYYETKGINFDLYASSTQERASDTLENVAPNQSYQRFKGLKEWHFGLFEGESVYLFDNLYKPEDLFGDRIVPFKGEARQQVEDRIVKTLHDIMSQTKNNALVVSHGTIMGVFLRYCLKLDEALKHNIGNCNILKFEYDNGTFKFVELIDPNL
>NZ_LN626917.1|WP_001018965.1|796216_796603_+|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSNDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPFLPNINNERLVLVNE
>NZ_LN626917.1|WP_001065804.1|796595_796892_+|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIYGYTPTCGTCKVSERMLDITNEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFQSVTDLLENLK
>NZ_LN626917.1|WP_000571209.1|797141_798167_+|methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIILITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHAVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSIDFGKFEKELIERQVKMEVLRHG
>NZ_LN626917.1|WP_000520233.1|798159_798855_+|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>NZ_LN626917.1|WP_000732338.1|798872_799694_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGSKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGNVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>NZ_LN626917.1|WP_045178713.1|800513_800708_+|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKDKATDFIDKVKGNKGE
>NZ_LN626917.1|WP_001183862.1|800941_801793_-|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNSDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>NZ_LN626917.1|WP_000168845.1|802120_802882_+|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>NZ_LN626917.1|WP_045178715.1|802979_804287_+|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDTVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>NZ_LN626917.1|WP_001006454.1|804392_805643_+|cysteine-desulfurase
MNEVAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFSYEF

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Click the colored protein region to show detailed information

Crispr_ID: NZ_LN626917_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_4

844963-845048

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN626917_4

>merge|NZ_LN626917|4|844963-845048|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGTGGAAAGCCAGCTTACAATAATGTGCAAGTTGG

>NZ_LN626917|4|4|844963-845048|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGGTGG
AAAGCCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_000670755.1\|860110_861013_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_LN626917.1\|WP_001067294.1\|840094_840472_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224023
NZ_LN626917.1\|WP_000185311.1\|845206_846136_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NZ_LN626917.1\|WP_045178726.1\|840833_841961_+\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
NZ_LN626917.1\|WP_000138487.1\|843567_844812_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_LN626917.1\|WP_000167322.1\|842268_843459_+\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
NZ_LN626917.1\|WP_000758209.1\|851539_852064_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_LN626917.1\|WP_045178728.1\|856291_859945_+\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_LN626917.1\|WP_045178725.1\|833852_835349_-\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
NZ_LN626917.1\|WP_000660054.1\|847746_848952_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_LN626917.1\|WP_001081626.1\|835682_836111_-\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
NZ_LN626917.1\|WP_000035058.1\|839086_839680_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238908
NZ_LN626917.1\|WP_000781162.1\|838639_839023_-\|kinase-associated-lipoprotein-B	unknown	unknown	gnl\|CDD\|378054
NZ_LN626917.1\|WP_000172367.1\|852814_856291_+\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NZ_LN626917.1\|WP_000066056.1\|846377_847757_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_LN626917.1\|WP_000007960.1\|850959_851535_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_LN626917.1\|WP_000054599.1\|836103_838509_-\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
NZ_LN626917.1\|WP_000711897.1\|852079_852655_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_LN626917.1\|WP_000402803.1\|835341_835683_-\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497
NZ_LN626917.1\|WP_000148855.1\|849302_850634_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_000670755.1\|860110_861013_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.74159e-87
NZ_LN626917.1\|WP_001067294.1\|840094_840472_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
NZ_LN626917.1\|WP_000185311.1\|845206_846136_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	8.83368e-151
NZ_LN626917.1\|WP_045178726.1\|840833_841961_+\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
NZ_LN626917.1\|WP_000138487.1\|843567_844812_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NZ_LN626917.1\|WP_000167322.1\|842268_843459_+\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
NZ_LN626917.1\|WP_000758209.1\|851539_852064_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.81012e-49
NZ_LN626917.1\|WP_045178728.1\|856291_859945_+\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LN626917.1\|WP_045178725.1\|833852_835349_-\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_LN626917.1\|WP_000660054.1\|847746_848952_-\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_LN626917.1\|WP_001081626.1\|835682_836111_-\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
NZ_LN626917.1\|WP_000035058.1\|839086_839680_+\|peptidylprolyl-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65
NZ_LN626917.1\|WP_000781162.1\|838639_839023_-\|kinase-associated-lipoprotein-B	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	8.96507e-53
NZ_LN626917.1\|WP_000172367.1\|852814_856291_+\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LN626917.1\|WP_000066056.1\|846377_847757_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_LN626917.1\|WP_000007960.1\|850959_851535_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	4.0006e-40
NZ_LN626917.1\|WP_000054599.1\|836103_838509_-\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_LN626917.1\|WP_000711897.1\|852079_852655_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.63465e-53
NZ_LN626917.1\|WP_000402803.1\|835341_835683_-\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	9.82501e-64
NZ_LN626917.1\|WP_000148855.1\|849302_850634_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0

>NZ_LN626917.1|WP_000138487.1|843567_844812_+|Glu/Leu/Phe/Val-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>NZ_LN626917.1|WP_000167322.1|842268_843459_+|ornithine--oxo-acid-transaminase
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINKNTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>NZ_LN626917.1|WP_045178726.1|840833_841961_+|NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVVLPNGVELRNRFVLAPLTHISSNDDGTISDIELPYIEKRSQDVGITSNAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSARELTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPIAVIEEVLKAKEVYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATAREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADDALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>NZ_LN626917.1|WP_001067294.1|840094_840472_+|S1-RNA-binding-domain-containing-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>NZ_LN626917.1|WP_000035058.1|839086_839680_+|peptidylprolyl-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>NZ_LN626917.1|WP_000781162.1|838639_839023_-|kinase-associated-lipoprotein-B
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHERKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>NZ_LN626917.1|WP_000054599.1|836103_838509_-|Na+/H+-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWIWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASKANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTVFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>NZ_LN626917.1|WP_001081626.1|835682_836111_-|Na(+)/H(+)-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>NZ_LN626917.1|WP_000402803.1|835341_835683_-|Na(+)/H(+)-antiporter-subunit-C
MEIIMIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>NZ_LN626917.1|WP_045178725.1|833852_835349_-|Na+/H+-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPLRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLIFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK
>NZ_LN626917.1|WP_000185311.1|845206_846136_-|glycerophosphodiester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNHIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDENVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNKNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>NZ_LN626917.1|WP_000066056.1|846377_847757_-|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPGYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLSTYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>NZ_LN626917.1|WP_000660054.1|847746_848952_-|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMRAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>NZ_LN626917.1|WP_000148855.1|849302_850634_+|glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>NZ_LN626917.1|WP_000007960.1|850959_851535_+|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVDTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLIVFWIVGKKLEQHFMGSKKE
>NZ_LN626917.1|WP_000758209.1|851539_852064_+|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDHDNNQHDSRQFGLIDKKDIIGNISLRYYPFSKWTIQFKS
>NZ_LN626917.1|WP_000711897.1|852079_852655_+|signal-peptidase-I
MKKELLEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKYNFNPENTKN
>NZ_LN626917.1|WP_000172367.1|852814_856291_+|helicase-exonuclease-AddAB-subunit-AddB
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEISNELNISIERQYFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQINPMLRLLKTDVLTTSYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLSQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>NZ_LN626917.1|WP_045178728.1|856291_859945_+|helicase-exonuclease-AddAB-subunit-AddA
MTIPEKPQGVIWTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTLDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVFDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIVEADTKKDICMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>NZ_LN626917.1|WP_000670755.1|860110_861013_+|fumarylacetoacetate-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVERLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK

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Crispr_ID: NZ_LN626917_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_5

1205271-1205363

Unclear

Consensus_repeat	Method
AGTTATCAATTTATTGATTACTGTTTCTTA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_LN626917_5

>merge|NZ_LN626917|5|1205271-1205363|CRISPRCasFinder
AGTTATCAATTTATTGATTACTGTTTCTTATGCATGAGCTTTAGCTCAGGCGTTCCGCTTATTAGTTATCAATTTATTGATTACTGTTTCTTA

>NZ_LN626917|5|5|1205271-1205363|CRISPRCasFinder
AGTTATCAATTTATTGATTACTGTTTCTTA	TGCATGAGCTTTAGCTCAGGCGTTCCGCTTATT
AGTTATCAATTTATTGATTACTGTTTCTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_045178820.1\|1206213_1207140_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_LN626917.1\|WP_000517908.1\|1213626_1213815_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_LN626917.1\|WP_000171418.1\|1212809_1213184_-\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|224221
NZ_LN626917.1\|WP_000547905.1\|1214195_1214837_-\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|224480
NZ_LN626917.1\|WP_000268754.1\|1196715_1196991_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NZ_LN626917.1\|WP_000167269.1\|1205486_1206221_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NZ_LN626917.1\|WP_000239746.1\|1207132_1208119_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_LN626917.1\|WP_078103526.1\|1208123_1208696_-\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
NZ_LN626917.1\|WP_045178824.1\|1211148_1212795_-\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|224378
NZ_LN626917.1\|WP_000262715.1\|1200387_1203954_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_LN626917.1\|WP_000043237.1\|1204100_1204832_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_LN626917.1\|WP_000687323.1\|1195287_1196025_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_LN626917.1\|WP_000531319.1\|1198818_1199151_-\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_LN626917.1\|WP_001261987.1\|1196024_1196528_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_LN626917.1\|WP_000181404.1\|1194834_1195185_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_LN626917.1\|WP_000426914.1\|1204947_1205181_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_LN626917.1\|WP_000164332.1\|1214843_1215488_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_LN626917.1\|WP_031905052.1\|1197425_1198793_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_LN626917.1\|WP_000007673.1\|1199137_1200388_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_LN626917.1\|WP_001151515.1\|1208898_1210959_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_045178820.1\|1206213_1207140_-\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.32419e-133
NZ_LN626917.1\|WP_000517908.1\|1213626_1213815_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
NZ_LN626917.1\|WP_000171418.1\|1212809_1213184_-\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	4.1554e-37
NZ_LN626917.1\|WP_000547905.1\|1214195_1214837_-\|thiamine-diphosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	1.16343e-81
NZ_LN626917.1\|WP_000268754.1\|1196715_1196991_-\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
NZ_LN626917.1\|WP_000167269.1\|1205486_1206221_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	3.68137e-140
NZ_LN626917.1\|WP_000239746.1\|1207132_1208119_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	7.80762e-178
NZ_LN626917.1\|WP_078103526.1\|1208123_1208696_-\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	1.76485e-98
NZ_LN626917.1\|WP_045178824.1\|1211148_1212795_-\|DAK2-domain-containing-protein	gnl\|CDD\|224378	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only].	0
NZ_LN626917.1\|WP_000262715.1\|1200387_1203954_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_LN626917.1\|WP_000043237.1\|1204100_1204832_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	4.78039e-115
NZ_LN626917.1\|WP_000687323.1\|1195287_1196025_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	3.27017e-164
NZ_LN626917.1\|WP_000531319.1\|1198818_1199151_-\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	1.00966e-46
NZ_LN626917.1\|WP_001261987.1\|1196024_1196528_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.02289e-68
NZ_LN626917.1\|WP_000181404.1\|1194834_1195185_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70
NZ_LN626917.1\|WP_000426914.1\|1204947_1205181_-\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
NZ_LN626917.1\|WP_000164332.1\|1214843_1215488_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	1.52718e-114
NZ_LN626917.1\|WP_031905052.1\|1197425_1198793_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_LN626917.1\|WP_000007673.1\|1199137_1200388_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_LN626917.1\|WP_001151515.1\|1208898_1210959_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0

>NZ_LN626917.1|WP_000426914.1|1204947_1205181_-|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
>NZ_LN626917.1|WP_000043237.1|1204100_1204832_-|ribonuclease-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>NZ_LN626917.1|WP_000262715.1|1200387_1203954_-|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLVERKKNQSETNARYEEEQENLIELLENISSEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEVKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRAVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESLTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQSQQTKHQLNDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEATLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAMFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>NZ_LN626917.1|WP_000007673.1|1199137_1200388_-|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFATNKENDEVKSLTEEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGAK
>NZ_LN626917.1|WP_000531319.1|1198818_1199151_-|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKKHLSNPEQIQRYIQQLEDLE
>NZ_LN626917.1|WP_031905052.1|1197425_1198793_-|signal-recognition-particle-protein
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNILKGMNLPF
>NZ_LN626917.1|WP_000268754.1|1196715_1196991_-|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>NZ_LN626917.1|WP_001261987.1|1196024_1196528_-|ribosome-maturation-factor-RimM
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>NZ_LN626917.1|WP_000687323.1|1195287_1196025_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQARVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>NZ_LN626917.1|WP_000181404.1|1194834_1195185_-|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR
>NZ_LN626917.1|WP_000167269.1|1205486_1206221_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>NZ_LN626917.1|WP_045178820.1|1206213_1207140_-|ACP-S-malonyltransferase
MSKTAIIFPGQGAQKVGMVQDLYNNNDQATEILTSAANTLDFDILETMFTDEEGKLGETENTQPALLTHSSALLAALKNLNPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAFPSGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWNEND
>NZ_LN626917.1|WP_000239746.1|1207132_1208119_-|phosphate-acyltransferase-PlsX
MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDEKKYNLNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGDIYAQKIRGIDNPKISLLNIGTEPAKGNSLTKKSYELLNQDHSLNFVGNIEAKTLMDGDTDVVVTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKIAGAILKKDLAEFAKKMDYSEYGGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVQTMKETVGESNE
>NZ_LN626917.1|WP_078103526.1|1208123_1208696_-|transcription-factor-FapR
MRGETLKLKKDKRREAIRQQIDSNPFITDYELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFIMFYDKRG
>NZ_LN626917.1|WP_001151515.1|1208898_1210959_-|ATP-dependent-DNA-helicase-RecG
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFLNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSMNVALLTGSVKGKKRKILLEQLENRTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD
>NZ_LN626917.1|WP_045178824.1|1211148_1212795_-|DAK2-domain-containing-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAIEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVAKLDKDEFVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGKVFNYGQQYGELIKLKVENMREQHREVIRKEQHTAKPKMETVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNKNILMASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSGSLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLIEMLADDSEILTVIIGQDAEQAVTDNMINWIEEQYPDVEVEVHEGGQPIYQYFFSVE
>NZ_LN626917.1|WP_000171418.1|1212809_1213184_-|Asp23/Gls24-family-envelope-stress-response-protein
MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRDGIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLNVSVNSINIYVQGVRVNNTGKKA
>NZ_LN626917.1|WP_000517908.1|1213626_1213815_+|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>NZ_LN626917.1|WP_000547905.1|1214195_1214837_-|thiamine-diphosphokinase
MHINLLCSDRHLPQDIWAKSNEGKWGGVDRGALILLKHQIIPFFSVGDFDSVSKEERQLLTEQLQIKPVQAEKADTDLALAVDKAVALGFDSITIYGATGGRLDHFFGAIQLLLKKAYYKHDVHIEVIDQQNKIELLPKGQHTVEKDKSYPYISFIPMTDDVELSLAGFKYNLARQMLNIGSTLTISNEIESLQAKVTVHDGLILQIRSTDLN
>NZ_LN626917.1|WP_000164332.1|1214843_1215488_-|ribulose-phosphate-3-epimerase
MTKLYPSLLSVDFLDLQHELKRLEEAGVDGVHFDVMDGQFVPNISIGLPILDAVRKGTTLPIDVHLMIENPEKYIASFAEHGADMISIHVESTPHIHRAIQMIKHLDKKAGVVINPGTPISQIEPILDIVDYVLVMTVNPGFGGQSFIDQCVEKIAGLNAIKMERQLNFDIEVDGGVNTDTAKVCVENGATMLVTGSFFFKQEDYKKVTQALKG

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Crispr_ID: NZ_LN626917_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_6

1966724-1966851

Orphan

Consensus_repeat	Method
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN626917_6

>merge|NZ_LN626917|6|1966724-1966851|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTCATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTAAATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

>NZ_LN626917|6|6|1966724-1966851|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	ATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTA
AATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_000590809.1\|1962578_1963301_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_LN626917.1\|WP_000031108.1\|1959890_1960043_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_000939529.1\|1976355_1976811_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NZ_LN626917.1\|WP_000379980.1\|1961300_1962428_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_LN626917.1\|WP_045179323.1\|1958893_1959289_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_000379102.1\|1983819_1984797_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_LN626917.1\|WP_045179326.1\|1979758_1981495_-\|SAV1866-family-putative-multidrug-efflux-ABC-transporter	unknown	unknown	gnl\|CDD\|224055
NZ_LN626917.1\|WP_000181394.1\|1960825_1961296_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
NZ_LN626917.1\|WP_000110011.1\|1974856_1975303_-\|peroxide-responsive-transcriptional-repressor-PerR	unknown	unknown	gnl\|CDD\|223806
NZ_LN626917.1\|WP_045179329.1\|1982630_1983668_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_LN626917.1\|WP_000063551.1\|1965009_1966071_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
NZ_LN626917.1\|WP_000251252.1\|1981785_1982328_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_LN626917.1\|WP_001011603.1\|1976891_1978181_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493
NZ_LN626917.1\|WP_000649898.1\|1963293_1964751_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836
NZ_LN626917.1\|WP_000886472.1\|1985057_1985894_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224596
NZ_LN626917.1\|WP_000116227.1\|1957312_1958698_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_LN626917.1\|WP_000869463.1\|1975399_1976350_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
NZ_LN626917.1\|WP_000669380.1\|1956035_1956857_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_LN626917.1\|WP_001236371.1\|1978473_1979568_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_LN626917.1\|WP_001251219.1\|1960067_1960667_-\|glucosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223440

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_000590809.1\|1962578_1963301_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.70748e-153
NZ_LN626917.1\|WP_000939529.1\|1976355_1976811_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.18155e-68
NZ_LN626917.1\|WP_000379980.1\|1961300_1962428_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	6.7316e-180
NZ_LN626917.1\|WP_045179326.1\|1979758_1981495_-\|SAV1866-family-putative-multidrug-efflux-ABC-transporter	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_LN626917.1\|WP_000379102.1\|1983819_1984797_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	8.631e-40
NZ_LN626917.1\|WP_000181394.1\|1960825_1961296_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.70324e-88
NZ_LN626917.1\|WP_000110011.1\|1974856_1975303_-\|peroxide-responsive-transcriptional-repressor-PerR	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56
NZ_LN626917.1\|WP_045179329.1\|1982630_1983668_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	3.18462e-156
NZ_LN626917.1\|WP_000063551.1\|1965009_1966071_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	1.65132e-122
NZ_LN626917.1\|WP_000251252.1\|1981785_1982328_-\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.0244e-125
NZ_LN626917.1\|WP_001011603.1\|1976891_1978181_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
NZ_LN626917.1\|WP_000649898.1\|1963293_1964751_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.55367e-98
NZ_LN626917.1\|WP_000886472.1\|1985057_1985894_-\|hypothetical-protein	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	0.000164936
NZ_LN626917.1\|WP_000116227.1\|1957312_1958698_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_LN626917.1\|WP_000869463.1\|1975399_1976350_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	8.45391e-136
NZ_LN626917.1\|WP_000669380.1\|1956035_1956857_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.57209e-78
NZ_LN626917.1\|WP_001236371.1\|1978473_1979568_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.5476e-86
NZ_LN626917.1\|WP_001251219.1\|1960067_1960667_-\|glucosamine-6-phosphate-isomerase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	9.77274e-11

>NZ_LN626917.1|WP_000063551.1|1965009_1966071_-|PTS-transporter-subunit-IIC
MSNAKNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>NZ_LN626917.1|WP_000649898.1|1963293_1964751_-|ABC-transporter-permease-subunit
MKCLIRFILVLGLLISSAMVYINPAAYAEQDQKWEKIKERGELRVGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNDYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGVVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLLVAAALYFVLTFVLTRIMNMIEGRLNASD
>NZ_LN626917.1|WP_000590809.1|1962578_1963301_-|amino-acid-ABC-transporter-ATP-binding-protein
MIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>NZ_LN626917.1|WP_000379980.1|1961300_1962428_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE
>NZ_LN626917.1|WP_000181394.1|1960825_1961296_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
>NZ_LN626917.1|WP_001251219.1|1960067_1960667_-|glucosamine-6-phosphate-isomerase
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>NZ_LN626917.1|WP_000031108.1|1959890_1960043_-|hypothetical-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>NZ_LN626917.1|WP_045179323.1|1958893_1959289_-|hypothetical-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPIIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATIEATKTKYRN
>NZ_LN626917.1|WP_000116227.1|1957312_1958698_-|class-II-fumarate-hydratase
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHHSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAQYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>NZ_LN626917.1|WP_000669380.1|1956035_1956857_+|RluA-family-pseudouridine-synthase
MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPTIDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTVDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
>NZ_LN626917.1|WP_000110011.1|1974856_1975303_-|peroxide-responsive-transcriptional-repressor-PerR
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>NZ_LN626917.1|WP_000869463.1|1975399_1976350_-|2-hydroxyacid-dehydrogenase
MKVVGLNRMREVETELQQRFSDVDFKFYKKASEIPESDLANLDILVGYDGGINEAFLRRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIVINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEALLIEVLKSRVIRHAYLDVFENEPLKPNHELYELDNVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNGLIENEVDAKKGY
>NZ_LN626917.1|WP_000939529.1|1976355_1976811_-|thioredoxin-dependent-thiol-peroxidase
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIVYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG
>NZ_LN626917.1|WP_001011603.1|1976891_1978181_+|glutamate-1-semialdehyde-2,1-aminomutase
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHSNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIKQTLKAADYAFSQMK
>NZ_LN626917.1|WP_001236371.1|1978473_1979568_+|aromatic-acid-exporter-family-protein
MRLGARIFKTGIAIILAMSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL
>NZ_LN626917.1|WP_045179326.1|1979758_1981495_-|SAV1866-family-putative-multidrug-efflux-ABC-transporter
MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELFAKQGAYEHLYSIQNL
>NZ_LN626917.1|WP_000251252.1|1981785_1982328_-|DUF402-domain-containing-protein
MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKDRYKKIRQY
>NZ_LN626917.1|WP_045179329.1|1982630_1983668_-|A/G-specific-adenine-glycosylase
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVHDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRSEKLLHGMWQFPMFKSEYARREMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAVSGTINIERLPDDMIWFDLSDRDQYTFPVPMSKIYQFING
>NZ_LN626917.1|WP_000379102.1|1983819_1984797_+|metal-dependent-hydrolase
MDTATHIAIGVGLTALATQDPAMASTFGATATTLIVGSLIPDGDTVLKLKDNATYISHHRGITHSIPFTILWPILITFLIFTFFSGTNPFHVWMWAQLAVFLHVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFTVLCIGIVLWVVGLHPLAVFFPIIALLIIYYMIRFKMRAVIKQQALKAIQQEHHPVKVFVAPTIKFMEWRVAIQTDAHDYVGKAYGRNVVFSDKVERQKLSTDSILWKVKGNKDIRTFLNFSSIYRWQTTTLADGSTEIRLIDLRYLKNDHYSFVAIAHVTKDNVIDHSYIGWVFTEDKLQRKLYAK
>NZ_LN626917.1|WP_000886472.1|1985057_1985894_-|hypothetical-protein
MLDNIILYFKNLPHTKRYVTERLKQSWKSFLIVLAACLILIIASETLFSFSHLTDVKEVRWLFRLIALIVFAVLMFTIYISYHHYMNDFLVTKLFNISAATPVVIMSILSFIMLVILTMISALVKPVNFETSYIALFYFIVMATIFVGLISVTFGLIRLLTEKINIIFYGICVLCFLVLPIIFIPNPNHVFINHILMLNPMYYIVNGIAQSIIFGISSMENIPYHFYFILFLCLIAAVNFVLARYTTHAIYNKTSKVTQTDNQQDVSKDSTDEADTSS

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Crispr_ID: NZ_LN626917_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_7

2000846-2000929

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGCCTGTAGAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LN626917_7

>merge|NZ_LN626917|7|2000846-2000929|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAATTTCTTTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>NZ_LN626917|7|7|2000846-2000929|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAA	TTTCTTTTTTCGAAATTCTCTGTGTTGGGGCCCACA
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_000636142.1\|1999954_2000713_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_LN626917.1\|WP_001017131.1\|1997595_1998639_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_LN626917.1\|WP_045179338.1\|2003110_2003842_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_LN626917.1\|WP_001643743.1\|2002472_2002886_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_000548777.1\|2008277_2008808_-\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_LN626917.1\|WP_001790679.1\|2006030_2006123_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_000613738.1\|2006339_2006894_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_LN626917.1\|WP_000153535.1\|1996976_1997606_-\|two-component-system-response-regulator-VraR	unknown	unknown	gnl\|CDD\|225107
NZ_LN626917.1\|WP_000180460.1\|1994275_1994476_-\|DUF1128-family-protein	unknown	unknown	gnl\|CDD\|227177
NZ_LN626917.1\|WP_000428172.1\|1995093_1995369_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_001014423.1\|2001297_2002284_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_LN626917.1\|WP_001790257.1\|2002914_2003025_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_001250339.1\|2003843_2005157_-\|lipid-II-isoglutaminyl-synthase-subunit-MurT	unknown	unknown	gnl\|CDD\|223840
NZ_LN626917.1\|WP_000140179.1\|2006960_2008031_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_LN626917.1\|WP_001110178.1\|1999351_1999738_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_078103544.1\|1993016_1994273_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
NZ_LN626917.1\|WP_045179336.1\|1995646_1996864_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_LN626917.1\|WP_000228670.1\|1994622_1995087_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_LN626917.1\|WP_000149064.1\|1998635_1999337_-\|cell-wall-active-antibiotics-response-protein	unknown	unknown	gnl\|CDD\|227100
NZ_LN626917.1\|WP_045179340.1\|2005448_2005949_+\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|224445

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_000636142.1\|1999954_2000713_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
NZ_LN626917.1\|WP_001017131.1\|1997595_1998639_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
NZ_LN626917.1\|WP_045179338.1\|2003110_2003842_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.18619e-120
NZ_LN626917.1\|WP_000613738.1\|2006339_2006894_+\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
NZ_LN626917.1\|WP_000153535.1\|1996976_1997606_-\|two-component-system-response-regulator-VraR	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.75115e-79
NZ_LN626917.1\|WP_000180460.1\|1994275_1994476_-\|DUF1128-family-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.24488e-25
NZ_LN626917.1\|WP_001014423.1\|2001297_2002284_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	9.69605e-76
NZ_LN626917.1\|WP_000548777.1\|2008277_2008808_-\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.54005e-11
NZ_LN626917.1\|WP_001250339.1\|2003843_2005157_-\|lipid-II-isoglutaminyl-synthase-subunit-MurT	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.60835e-98
NZ_LN626917.1\|WP_000140179.1\|2006960_2008031_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_LN626917.1\|WP_000228670.1\|1994622_1995087_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	5.12846e-65
NZ_LN626917.1\|WP_078103544.1\|1993016_1994273_-\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
NZ_LN626917.1\|WP_045179336.1\|1995646_1996864_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	3.36604e-85
NZ_LN626917.1\|WP_000149064.1\|1998635_1999337_-\|cell-wall-active-antibiotics-response-protein	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
NZ_LN626917.1\|WP_045179340.1\|2005448_2005949_+\|H-type-ferritin-FtnA	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	1.16105e-73

>NZ_LN626917.1|WP_000636142.1|1999954_2000713_-|type-I-methionyl-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>NZ_LN626917.1|WP_001110178.1|1999351_1999738_-|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMHYLITKKEQLSKLIDSLMLTLENKYIDIVEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>NZ_LN626917.1|WP_000149064.1|1998635_1999337_-|cell-wall-active-antibiotics-response-protein
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>NZ_LN626917.1|WP_001017131.1|1997595_1998639_-|sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>NZ_LN626917.1|WP_000153535.1|1996976_1997606_-|two-component-system-response-regulator-VraR
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>NZ_LN626917.1|WP_045179336.1|1995646_1996864_+|YihY/virulence-factor-BrkB-family-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIVFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDTNATHQRTYNVDEHPSDTYPEDDKNIKDKIVDKLKKD
>NZ_LN626917.1|WP_000428172.1|1995093_1995369_+|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>NZ_LN626917.1|WP_000228670.1|1994622_1995087_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIQDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>NZ_LN626917.1|WP_000180460.1|1994275_1994476_-|DUF1128-family-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>NZ_LN626917.1|WP_078103544.1|1993016_1994273_-|aminopeptidase
MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYRCGASDVRVVYSDPTLKRLKFENESVEHFANHEIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNVKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF
>NZ_LN626917.1|WP_001014423.1|2001297_2002284_+|aromatic-acid-exporter-family-protein
MNGQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQEIILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>NZ_LN626917.1|WP_001643743.1|2002472_2002886_-|hypothetical-protein
MKPTKVILKDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEIKFEFALFDSDMDNLKYIEYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMVTESGVSLRINVTKSGFTKFINELVSLH
>NZ_LN626917.1|WP_001790257.1|2002914_2003025_-|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>NZ_LN626917.1|WP_045179338.1|2003110_2003842_-|type-1-glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIENGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHNFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEKQAKQVLIDRANRQKKSR
>NZ_LN626917.1|WP_001250339.1|2003843_2005157_-|lipid-II-isoglutaminyl-synthase-subunit-MurT
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNGDDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISRFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQAIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>NZ_LN626917.1|WP_045179340.1|2005448_2005949_+|H-type-ferritin-FtnA
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEEAMFENHINYLTRIGDDSNALYLYEKELGTRTFDEE
>NZ_LN626917.1|WP_001790679.1|2006030_2006123_-|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>NZ_LN626917.1|WP_000613738.1|2006339_2006894_+|3'-5'-exonuclease
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>NZ_LN626917.1|WP_000140179.1|2006960_2008031_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>NZ_LN626917.1|WP_000548777.1|2008277_2008808_-|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSAGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_LN626917_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_8

2294039-2294240

Orphan

Consensus_repeat	Method
TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	PILER-CR

2 spacers

The CRISPR arrays of NZ_LN626917_8

>merge|NZ_LN626917|8|2294039-2294240|PILER-CR
TGCTTGGTTGGCAGGTGCTGCTTGATTTCCAGGTTGTGCTTGTGCAGCGTTATTCGGATCAGCTTGATTACCTTGTCCAGCTGGTTGTGCTGTACCTGCTGCCGGTTGTGCTGCGCCTCCTGCTGGATTAGCCTGTCCACCTTGGTTTGCTGGTTGTGCTGCTGGTTGTCCTTGGTTGGCAGGTGCAGCTGGCTGTGCTGTA

>NZ_LN626917|8|1|2294039-2294240|PILER-CR
TGCTTGGTTGGCAGGTGCTGCTTGATTTCCAGGT	TGTGCTTGTGCAGCGTTATTCGGATCAGCTTGATTACCTTGTCCAGCT
GGTTGTGCTGTACCTGCTGCCGGTTGTGCTGCGC	CTCCTGCTGGATTAGCCTGTCCACCTTGGTTTGCTGGTTGTGCTGCTGGTTGTCCTTGGTTGGCAGGTGCAGCT
GGCTGTGCTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_045179426.1\|2282630_2283320_+\|DUF1129-family-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_000733427.1\|2281604_2281994_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_001237527.1\|2308651_2309995_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LN626917.1\|WP_000958522.1\|2305213_2306278_-\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NZ_LN626917.1\|WP_000047120.1\|2310172_2310856_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NZ_LN626917.1\|WP_000820892.1\|2279884_2280451_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_LN626917.1\|WP_045179436.1\|2310874_2312062_-\|UDPGP-type-1-family-protein	unknown	unknown	gnl\|CDD\|133036
NZ_LN626917.1\|WP_000521495.1\|2294728_2296084_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_LN626917.1\|WP_001141016.1\|2306425_2307868_-\|multidrug-efflux-MFS-transporter-LmrS	unknown	unknown	gnl\|CDD\|129794
NZ_LN626917.1\|WP_045179430.1\|2296110_2297043_-\|YbbR-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227193
NZ_LN626917.1\|WP_000162591.1\|2298042_2298951_-\|arginase	unknown	unknown	gnl\|CDD\|212515
NZ_LN626917.1\|WP_000148821.1\|2279424_2279883_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_LN626917.1\|WP_072435031.1\|2308056_2308530_-\|multidrug-efflux-transporter-SepA	unknown	unknown	gnl\|CDD\|374975
NZ_LN626917.1\|WP_045179424.1\|2282060_2282504_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LN626917.1\|WP_094409958.1\|2285416_2286984_+\|IS3-like-element-ISSau2-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_LN626917.1\|WP_000638614.1\|2280545_2281088_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_LN626917.1\|WP_038412973.1\|2283474_2285121_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|226192
NZ_LN626917.1\|WP_000347896.1\|2297044_2297854_-\|TIGR00159-family-protein	unknown	unknown	gnl\|CDD\|224539
NZ_LN626917.1\|WP_000358501.1\|2278738_2279422_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
NZ_LN626917.1\|WP_000545116.1\|2281167_2281467_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_000820892.1\|2279884_2280451_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.24037e-61
NZ_LN626917.1\|WP_001237527.1\|2308651_2309995_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.31901e-37
NZ_LN626917.1\|WP_000958522.1\|2305213_2306278_-\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	5.47694e-116
NZ_LN626917.1\|WP_072435031.1\|2308056_2308530_-\|multidrug-efflux-transporter-SepA	gnl\|CDD\|374975	pfam17080, SepA, Multidrug Resistance efflux pump. SepA is a drug efflux protein that is involved in bacterial multidrug resistance. It is predicted to have four transmembrane domains.	1.1244e-29
NZ_LN626917.1\|WP_045179436.1\|2310874_2312062_-\|UDPGP-type-1-family-protein	gnl\|CDD\|133036	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.	7.58915e-146
NZ_LN626917.1\|WP_000521495.1\|2294728_2296084_-\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_LN626917.1\|WP_001141016.1\|2306425_2307868_-\|multidrug-efflux-MFS-transporter-LmrS	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	6.86453e-81
NZ_LN626917.1\|WP_045179430.1\|2296110_2297043_-\|YbbR-like-domain-containing-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	1.61381e-115
NZ_LN626917.1\|WP_000162591.1\|2298042_2298951_-\|arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	5.94976e-145
NZ_LN626917.1\|WP_000148821.1\|2279424_2279883_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	4.39168e-77
NZ_LN626917.1\|WP_045179424.1\|2282060_2282504_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.15699e-12
NZ_LN626917.1\|WP_000047120.1\|2310172_2310856_-\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	4.64044e-66
NZ_LN626917.1\|WP_000638614.1\|2280545_2281088_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.895e-28
NZ_LN626917.1\|WP_038412973.1\|2283474_2285121_-\|IS1182-family-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.59081e-36
NZ_LN626917.1\|WP_000347896.1\|2297044_2297854_-\|TIGR00159-family-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	2.13611e-103
NZ_LN626917.1\|WP_000358501.1\|2278738_2279422_+\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000183013
NZ_LN626917.1\|WP_094409958.1\|2285416_2286984_+\|IS3-like-element-ISSau2-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.59839e-44

>NZ_LN626917.1|WP_094409958.1|2285416_2286984_+|IS3-like-element-ISSau2-family-transposase
MKTLKGALFMSIKPKVDIDVLLYMFQEYEKGVSFQYLIDTLQLDINVNTLYPKYKYYKTHGIETLLTQKQYNHYSKELKLKVVNEYLNSNQSTQDIAIKYNIRSSTQVKNWIKMYTVGKEIKNQSPKTGVYIMKARKTTFEERVTIVEYYLNHKQSYREVAEHFNISYGQIYQWVHKYQAHGKNGLVDGRGKGKPKSMMTPEEQKEAEIQALKAQNRLLEMENDVFKKVSSIGKRDDSKRKQITAYKTIEALKHQYPIQRLCRILGISRASYYKWVHYQSSELELENEQLKREIESIYHKYNGIYGYRRIYIYIRLKLGKQVNRKRIYRLMKELNLKAVIRQKRKPYRRSTPQITSENKLNRQFDIDTPNKVWLTDVTEFKIKEGSKIYLSAIYDLGAKRIVSYELGPSNNNQLVFKTFNQAIEKVENTKGILFHSDRGFQYTSKTFKHMLDECGMIQSMSRVSKCIDNGPMEGVWGTIKSEIFRGNKHFKFNSVEEATKTIHDFILFFNHERITLKMADSV
>NZ_LN626917.1|WP_038412973.1|2283474_2285121_-|IS1182-family-transposase
MYKNYNMTQLTLPIETSVRIPQNDISRYVNEIFETIPDSEFDEFRHHRGATSYHPKMMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQDQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLIDDKSIFIDGTKVEASANRYTFVWKKSIQNYESKLNENSKALYRDLVEEKIIPEIKEDGDSDLTIEEIDLIGSHLDKEIEDLNHSIQNEDCTQIRKQTRKKRTEIKKFKKKFDDYSERKSKYEEQKSILKDRNSFSKTDHDATFMRMKEDHMKNGQLKPRYNLQIATNSQFVLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSDIFKTQNWKYDELNDEFICPNNKRIGLKRYAYRNDRYGFKRDFKLYECDDCSACSLRQQCMKPNSKSNKKIMKNYNWEYFKAQINQKLSEPETKKIYSQRKIDVEPVFGFMKAILGFTRMSVRGINKVKRELGFVLMALNIRKIVARRAVYYQIHLKKADFYQIINRNQLFYIA
>NZ_LN626917.1|WP_045179426.1|2282630_2283320_+|DUF1129-family-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKSGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFLFIVMPIGLRIERNISKKHSHTFL
>NZ_LN626917.1|WP_045179424.1|2282060_2282504_-|GNAT-family-N-acetyltransferase
MRTLNKDEHNYIKQIANIHEILLSQAESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISSTIHKSNLPMISLNKDLGYQVSHVKMYKDID
>NZ_LN626917.1|WP_000733427.1|2281604_2281994_-|hypothetical-protein
MKKLIISIMAIMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDEDKNKDKDKEASQDKQSKDQTKSSDKDNHKKPTSTDKDQKANDKHQS
>NZ_LN626917.1|WP_000545116.1|2281167_2281467_-|hypothetical-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>NZ_LN626917.1|WP_000638614.1|2280545_2281088_-|GNAT-family-N-acetyltransferase
MIYCETERLILRDWHEDDLLPFQKMNANYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKESHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLLPEFWGKGLATEGAKATLKLAEQHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>NZ_LN626917.1|WP_000820892.1|2279884_2280451_+|TIGR00730-family-Rossman-fold-protein
MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>NZ_LN626917.1|WP_000148821.1|2279424_2279883_+|YaiI/YqxD-family-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVITQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEKSLLRVIHRIKELD
>NZ_LN626917.1|WP_000358501.1|2278738_2279422_+|hypothetical-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKSQKYEVKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA
>NZ_LN626917.1|WP_000521495.1|2294728_2296084_-|phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>NZ_LN626917.1|WP_045179430.1|2296110_2297043_-|YbbR-like-domain-containing-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKITGGEEQLNDIAYLKATFKTNKKINGDTKDIAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFDSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVSKAEPSETKAYINVK
>NZ_LN626917.1|WP_000347896.1|2297044_2297854_-|TIGR00159-family-protein
MDFSNFFQNLSTLKIVTSILDLLIVWYVLYLLITVFKGTKAIQLLKGILVIVIGQQISMILNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRGSFLKRYTSNTYSKDEEKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGIAMDSNISQELLINVFIPNTPLHDGAMIIQGTKIAAAASYLPLSDSPKISKSLGTRHRAAVGISEVSDAFTVIVSEETGDISVTFDGKLRRDISNEIFEELLAEHWFGTRFQKKGVK
>NZ_LN626917.1|WP_000162591.1|2298042_2298951_-|arginase
MTKKKGIDIIGVPSTFGQRKLGVDLGPTAIRYAGLIPRLKQLDLDVNDKGDIKVSAVDIEKFQSEQNGLRNYDEIIDVTQKLNKEVSASIENNRFPLVLGGDHSIAIGSVSAISKHYNNLGVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLDKGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPGTGTRVLGGLTYRESHFALELLHQSQSVTSMDLVEVNPLIDHNNHTAEQSVSLVGTFFGETLL
>NZ_LN626917.1|WP_000958522.1|2305213_2306278_-|P-loop-NTPase
MLTVDQVKELIGEIKDPIIDVPLKETEGIVEVSIKEEKEHVSVKVAMAQLGGAPQLDLQMAVVNVLKENGAKTVGIRFETLPEEKVNQFKPKEENKPKTIEGLLSQNNPVEFIAIASGKGGVGKSTVAVNLAVALAREGKKVGLVDADIYGFSVPDMMGIDEKPGINGKEVIPVERHGVKVISMAFFVEENAPVIWRGPMLGKMLTNFFTEVRWGDIEYLILDLPPGTGDVALDVHTMLPSSKEIIVTTPHPTAAFVAARAGAMAKHTDHSILGVIENMSYFESKETGNKEYVFGKGGGTKLADELNTQLLGELPLEQPSWNPKDFAPSIYQSDDRLGKIYSSIAQKVIAATNK
>NZ_LN626917.1|WP_001141016.1|2306425_2307868_-|multidrug-efflux-MFS-transporter-LmrS
MAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFMLVNGVMIPLTAYLMDRIKTRPLYLAAMGTFLVGSIVAAMAPNFGVLMLARVIQAMGAGVLMPLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGLIIDQASWRVPFIIIVGIALVAFIFGLISISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPVVIGAMIISSIIIYLFIRRQFNISNALLNLSVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLALSALLSGLVIMPGAIINGIMSVFTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTYLIVVYAIRMFSVSLLMMPINTTGINSLKNEEISHGTAIMNFGRVMAGSLGTALMVTLMSFGAKIFSSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRKF
>NZ_LN626917.1|WP_072435031.1|2308056_2308530_-|multidrug-efflux-transporter-SepA
MVMNYLKHKFYNLLTTIIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMYDNLLYYGSYIIFGYFIVFAVEHLMDYFRKMLPENAYFRGATFHLISYMVATTLFYFIIHLNYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
>NZ_LN626917.1|WP_001237527.1|2308651_2309995_-|MFS-transporter
MRLKSIVTVIALILIMFMAAIESSIISLALPTIKQDLNAGNLISLIFTAYFIALVIANPIVGELLTRFKIIYIAIAGLTLFTVGSLMSGLSTHFSMLVISRVIQGFGSGVMMSLSQIVPKLAFEIPLRYKIMGIVGSVWGISSIIGPLLGGGILEFATWHWLFYINIPIAIIAIILVVWTFHFPEEETVAKSKFDTKGITLFYIFIGLIMFALLNQQHLYLNIIGFVLAILVALRLFNVEKKVSSPFLPVAEFNRMITLVFITDLLTAVCLMGFNLYIPVYLQEQLGLSPLQSGLVIFPLSVAWITLNFNLHHIEAKLSRKVIYLSSFTLLLLSSIIIAFGIKLPILIACVLILSGLSFGYIYTKDSVIVQEETSPIQMKKMMSFYGLTKNLGASIGSTIMGYLYALKSGLFGANLHNILGVVSLISVGLIVVWLIFYREAASQTKE
>NZ_LN626917.1|WP_000047120.1|2310172_2310856_-|hemolysin-III-family-protein
MSKSSEKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAYGTLASVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGWVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM
>NZ_LN626917.1|WP_045179436.1|2310874_2312062_-|UDPGP-type-1-family-protein
MLDKNQLAKYKQDHLCEYEKIMSNNEKEALEEKVASLDLDFIAKLYNDLYINKKTIDDVSAVSEVKYDIKSQMSDDEIKRLEEQGLQAIKEGQFAVLLMAGGQGTRLGYKGPKGSFEIEGVSLFELQAKQLKELHRQTGHKIQWYIMTSDINHEETLTYFESHNYFGYDQESIHFFKQDNIVALSEAGQLILNQQGRIMETPNGNGGVFKSLDKAGYLEEMSNNGVKYIFLNNIDNVLVKVLDPLFAGFTVEHDYDITSKTIQPKPGESVGRLVNVDCKDTVLEYSELDPEVANQFNNANIGIHAFKLGFILNAVNRELPYHLAIKNLKQLDENFGVIEQPTLKFELFYFDIFTYGTSFVTLQVPREEEFSPLKNKEGKDSVATATEDLRRMGLI

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Crispr_ID: NZ_LN626917_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_9

2352615-2352740

Orphan

Consensus_repeat	Method
CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN626917_9

>merge|NZ_LN626917|9|2352615-2352740|CRISPRCasFinder
CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCACTGGTTTCTCATGATTTTTTAATGTTTTTATTTTGAGTTACTCGAAAATTTTCCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA

>NZ_LN626917|9|8|2352615-2352740|CRISPRCasFinder
CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	CTGGTTTCTCATGATTTTTTAATGTTTTTATTTTGAGTTACTCGAAAATTTT
CCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_001250038.1\|2354994_2355432_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_LN626917.1\|WP_000769709.1\|2347846_2348272_+\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591
NZ_LN626917.1\|WP_001791582.1\|2343021_2343189_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_000204276.1\|2352797_2354234_-\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420
NZ_LN626917.1\|WP_001015495.1\|2341445_2342294_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NZ_LN626917.1\|WP_000136272.1\|2352369_2352549_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236623
NZ_LN626917.1\|WP_000586768.1\|2357274_2358135_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184205
NZ_LN626917.1\|WP_045179447.1\|2349403_2351068_-\|acetolactate-synthase-AlsS	unknown	unknown	gnl\|CDD\|236312
NZ_LN626917.1\|WP_000101625.1\|2360877_2361267_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NZ_LN626917.1\|WP_000170975.1\|2354582_2354981_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_LN626917.1\|WP_000222271.1\|2343185_2345612_+\|polysaccharide-lyase-8-family-protein	unknown	unknown	gnl\|CDD\|238517
NZ_LN626917.1\|WP_000791607.1\|2356478_2357285_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_LN626917.1\|WP_000542274.1\|2359473_2359842_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_LN626917.1\|WP_000569649.1\|2359858_2360803_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NZ_LN626917.1\|WP_000179061.1\|2348662_2349367_-\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
NZ_LN626917.1\|WP_000044369.1\|2346736_2347552_-\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319792
NZ_LN626917.1\|WP_000389651.1\|2358131_2358941_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184207
NZ_LN626917.1\|WP_001044451.1\|2345671_2346526_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_LN626917.1\|WP_001791584.1\|2351537_2351720_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_001221836.1\|2355679_2356474_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_000791607.1\|2356478_2357285_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	2.81787e-49
NZ_LN626917.1\|WP_001250038.1\|2354994_2355432_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.91074e-100
NZ_LN626917.1\|WP_000204276.1\|2352797_2354234_-\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.62674e-63
NZ_LN626917.1\|WP_001015495.1\|2341445_2342294_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	3.15275e-150
NZ_LN626917.1\|WP_000136272.1\|2352369_2352549_-\|hypothetical-protein	gnl\|CDD\|236623	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ.	0.0004492
NZ_LN626917.1\|WP_000569649.1\|2359858_2360803_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.89947e-175
NZ_LN626917.1\|WP_000586768.1\|2357274_2358135_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0
NZ_LN626917.1\|WP_000170975.1\|2354582_2354981_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.2295e-82
NZ_LN626917.1\|WP_000101625.1\|2360877_2361267_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.01588e-89
NZ_LN626917.1\|WP_045179447.1\|2349403_2351068_-\|acetolactate-synthase-AlsS	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
NZ_LN626917.1\|WP_000222271.1\|2343185_2345612_+\|polysaccharide-lyase-8-family-protein	gnl\|CDD\|238517	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates include chondroitin, chondroitin 4-sulfate, chondroitin 6-sulfate, and hyaluronic acid. Family members include chondroitin AC lyase, chondroitin abc lyase, xanthan lyase, and hyalurate lyase.	0
NZ_LN626917.1\|WP_000542274.1\|2359473_2359842_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
NZ_LN626917.1\|WP_000179061.1\|2348662_2349367_-\|acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.39507e-119
NZ_LN626917.1\|WP_000769709.1\|2347846_2348272_+\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	8.17372e-34
NZ_LN626917.1\|WP_000044369.1\|2346736_2347552_-\|HAD-IIB-family-hydrolase	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.06188e-100
NZ_LN626917.1\|WP_000389651.1\|2358131_2358941_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_LN626917.1\|WP_001044451.1\|2345671_2346526_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.20929e-22
NZ_LN626917.1\|WP_001221836.1\|2355679_2356474_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.21958e-120

>NZ_LN626917.1|WP_000136272.1|2352369_2352549_-|hypothetical-protein
MTEIVEFLSDGKLASRLEIQETMGLQKSYTSELIAELKKLEIIGSEGRGPGTRYYLIRD
>NZ_LN626917.1|WP_001791584.1|2351537_2351720_-|hypothetical-protein
MIDSVFWKKAFIPVYFIVAMLVFLLFRFYIKTNNFSIYLMIIFLMCLGTASIIYNYKNNR
>NZ_LN626917.1|WP_045179447.1|2349403_2351068_-|acetolactate-synthase-AlsS
MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKDLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>NZ_LN626917.1|WP_000179061.1|2348662_2349367_-|acetolactate-decarboxylase
MASVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISGLFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGAVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDEDFINANIDYKDIADEIREAE
>NZ_LN626917.1|WP_000769709.1|2347846_2348272_+|MAP-domain-containing-protein
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTMDGYHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNQLASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
>NZ_LN626917.1|WP_000044369.1|2346736_2347552_-|HAD-IIB-family-hydrolase
MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVITVVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEPFLFEDIEDILHHISAQYNVEFIPQRAFEGNETHYNFYFHSTGNHNNDRRILEVLVRYANDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMKKYNIPVKSILGFGDSGNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY
>NZ_LN626917.1|WP_001044451.1|2345671_2346526_-|M23-family-metallopeptidase
MNKTNFGDYLNKSKSRKIYKIFDQNLKREFSYWQFRKLFKSYTWQSDVHELKVCTQNDGTIEQIWIDKANQFGVAVTWKDNSIIGFVMRPLINYDAIKNETTLKYAVPTTDCYEVFWGGDNELYNYHYLYPHQRYAIDLVIKENHKTYKNLGKVNADYFCFGKDIIAPANGTVEKVVNGVQDNSIGSTKESQFLGNYIVIKHAENEYSLIAHLQQYSIIVNEGQNVKYGDIIGKVGNSGNSTEPHIHFQVMNDKNIEACTSLKIRFINNRELIKGDVVCGLQGE
>NZ_LN626917.1|WP_000222271.1|2343185_2345612_+|polysaccharide-lyase-8-family-protein
MTYRMKKWQKLSTITLLMAGVITLNGGEFRSIDKHQIAVADTNVQTTDYEKLRNIWLDVNYGYDKYDENNPDMKKKFEATENEAEKLLKEMKTESDRKYLWESSKDLDTKSADMTRTYRNIEKISEAMKHKNTKLKTDENKTKVKDALEWLHKNAYGKEPDKKVADLTSNFKNKTSRNTNLNWWDYEIGTPRALTNTLILLQEDFTDEEKKKYTAPIKTFAPDSDKILSSVGKSEPAKGGNLVDISKVKLLESIIEEDKDMMKKSIDSFNTVFTYAQNSATGKERNGFYKDGSYIDHQDVPYTGAYGVVLLEGISQMMPMIKETPFNDSNQNDTTLKSWIDDGFMPLIYKGEMMDLSRGRAISRENETSHSASATVMKSLLRLSDTMDKSTKAKYKKIVKTSVESDSSYKQTDYLSSYSDISKMKSLMEDSTISTNGLTQQLKIYNDMDRVTYHNKGLDFAFGLSMTSKNVARYESINGENLKGWHTGAGMSYLYNSDVKHYRDNFWATADMKRLAGTTTLDNEEPKSTDVKKSSKTFVGGTKFDDQHASIGMDFENQDKTLTAKKSYFILNDKIVFLGTGIKSTDSSKNPVTTIENRKANDYKLYKDDTQTTNSDNQETNSLFLESTNSTQNNIGYHFLNESKITVKKESHTGKWSDINKSQKDIQKTDEYYEVTQKHSNTDSKYAYVLYPGLSKDVFKSKASKVTVVKQEDDFHVVKDNESVWAGINYSDSAKTFEINNTKVEVKAKGMFILTKKDDNTYECSFYNPESTNSVSDIESKISMTGYSIINKNTSTSNESGVRFELTK
>NZ_LN626917.1|WP_001791582.1|2343021_2343189_+|hypothetical-protein
MLKIWVIDCLYASTFFVDCLTVDSQLYTLTNFEKLNHYLIIIFIAHAQHKKETCQ
>NZ_LN626917.1|WP_001015495.1|2341445_2342294_-|aldo/keto-reductase
MNHIEISKDVKIPVLGFGVFQIPQEQTAEAVKEAIKAGYRHIDTAQSYLNETEVGQGIEASGIDRSELFITTKVWIENVNYEDTIKSIERSLQRLNLDYIDLVLIHQPYNDVYGSWRALEELKETGKIKAIGVSNFGVDRIVDLGIHNQIQPQVNQIEINPFHQQEEQVAALQQENVVVEAWAPFAEGKNQLFQNQLLQAIADKYNKSIAQVILRWLVERDIVVLAKSVNPERMAQNLDIFDFELTEEDKQQIATLEESNSQFFSHADPEMIKALTSRELDV
>NZ_LN626917.1|WP_000204276.1|2352797_2354234_-|putative-DNA-binding-domain-containing-protein
MTSSKYIEYLQTEVEGQLLDRKRASINPKDVAQHISAFANAEGGKLVIGIEDNGEISGFNHSKAKKKEVYIEAPFEHLYRIPKYTYEIIEVKKRDGTMDEILIFDIEPSYDAIITLKDDSVYLRINDKSRKLTHNQITNLEYDRGSRRFEEELVEYSSIEDVNEELVDEFKQLLNTNVDNEKLLKARGFMREGKLTVAGLLLFSNNINVYLPGARIRFMRYEGTKEESGTRLNIVKDITFDKALPVAIREARAFINTQLREYTFLGKEGRFVTLPEYPEFAWFEGMINSIVHRRYDNQGDHIRIKMFDDRLEISSPGALPASVTLENIKEERYSRNPKLAAALTQYKWVRESNEGVGRIFDEMKQYFLDDPVYSEPNNSSVQLALKNNIIARKKRETGRVSNIITPELFESLNEQQELIVRHLYNQGELTASKIANIIQRSVPTARKRLKELEEMNIISTHGSSKNDPKRTYYLLGFE
>NZ_LN626917.1|WP_000170975.1|2354582_2354981_-|30S-ribosomal-protein-S9
MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>NZ_LN626917.1|WP_001250038.1|2354994_2355432_-|50S-ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>NZ_LN626917.1|WP_001221836.1|2355679_2356474_-|tRNA-pseudouridine(38-40)-synthase-TruA
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQYFHFDTDLNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSL
>NZ_LN626917.1|WP_000791607.1|2356478_2357285_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWMFALILFFMRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVKRTSYRQLKWQLRDTLSLIMIIPIAIILFVLKYSGV
>NZ_LN626917.1|WP_000586768.1|2357274_2358135_-|energy-coupling-factor-transporter-ATPase
MIIRFDNVSYTYQKGTPYQHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMNLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKEKLADWHIGLPEIVQLQYDFEQKHQTKLKDIALTEEAFVSLYKEWQHEK
>NZ_LN626917.1|WP_000389651.1|2358131_2358941_-|energy-coupling-factor-transporter-ATPase
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALEQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTATEIFDHAEELTTIGLDLPFPIKINQMLGHQTSFLTYEGLVDQL
>NZ_LN626917.1|WP_000542274.1|2359473_2359842_-|50S-ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
>NZ_LN626917.1|WP_000569649.1|2359858_2360803_-|DNA-directed-RNA-polymerase-subunit-alpha
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>NZ_LN626917.1|WP_000101625.1|2360877_2361267_-|30S-ribosomal-protein-S11
MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV

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Click the colored protein region to show detailed information

Crispr_ID: NZ_LN626917_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN626917_10

2867911-2867994

Orphan

Consensus_repeat	Method
TTTCGAAATTCTCTGTGTTGGGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN626917_10

>merge|NZ_LN626917|10|2867911-2867994|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCCACACCCTAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCC

>NZ_LN626917|10|9|2867911-2867994|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCC	ACACCCTAACTCGCATTGCCTGTAGAATTTCT
TTTCGAAATTCTCTGTGTTGGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN626917.1\|WP_000240855.1\|2873754_2873892_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_LN626917.1\|WP_000362509.1\|2871757_2873137_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_LN626917.1\|WP_000779134.1\|2866843_2867239_-\|DUF3147-family-protein	unknown	unknown	gnl\|CDD\|288237
NZ_LN626917.1\|WP_000249657.1\|2869813_2871691_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_LN626917.1\|WP_045179660.1\|2859892_2861773_+\|peptide-resistance-ABC-transporter-permease-subunit-VraE	unknown	unknown	gnl\|CDD\|376899
NZ_LN626917.1\|WP_000215590.1\|2869094_2869814_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_LN626917.1\|WP_000491382.1\|2867306_2867660_-\|DUF3147-family-protein	unknown	unknown	gnl\|CDD\|288237
NZ_LN626917.1\|WP_000586234.1\|2863142_2863640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN626917.1\|WP_000154162.1\|2859144_2859903_+\|peptide-resistance-ABC-transporter-ATP-binding-subunit-VraD	unknown	unknown	gnl\|CDD\|224059
NZ_LN626917.1\|WP_001054111.1\|2866021_2866591_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_LN626917.1\|WP_000790915.1\|2863641_2864391_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373922
NZ_LN626917.1\|WP_000089284.1\|2864409_2865213_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NZ_LN626917.1\|WP_000742840.1\|2868212_2869052_-\|nucleoid-occlusion-protein	unknown	unknown	gnl\|CDD\|275105
NZ_LN626917.1\|WP_000672024.1\|2861864_2862056_+\|peptide-resistance-ABC-transporter-activity-modulator-VraH	unknown	unknown	unknown
NZ_LN626917.1\|WP_001059079.1\|2865694_2865895_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_LN626917.1\|WP_001789343.1\|2873280_2873634_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234782

Protein	Function_ID	Function_description	E-value
NZ_LN626917.1\|WP_000240855.1\|2873754_2873892_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	8.39798e-10
NZ_LN626917.1\|WP_000779134.1\|2866843_2867239_-\|DUF3147-family-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	5.93989e-39
NZ_LN626917.1\|WP_000249657.1\|2869813_2871691_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_LN626917.1\|WP_000491382.1\|2867306_2867660_-\|DUF3147-family-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.35852e-38
NZ_LN626917.1\|WP_000215590.1\|2869094_2869814_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	3.53317e-96
NZ_LN626917.1\|WP_045179660.1\|2859892_2861773_+\|peptide-resistance-ABC-transporter-permease-subunit-VraE	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	3.81636e-06
NZ_LN626917.1\|WP_000154162.1\|2859144_2859903_+\|peptide-resistance-ABC-transporter-ATP-binding-subunit-VraD	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.13228e-111
NZ_LN626917.1\|WP_001054111.1\|2866021_2866591_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.78153e-16
NZ_LN626917.1\|WP_000790915.1\|2863641_2864391_-\|hypothetical-protein	gnl\|CDD\|373922	pfam15526, Ntox21, Novel toxin 21. Bacterial genomes and plasmids encode a variety of peptide and protein toxins that mediate inter-bacterial competition. Bacteriocins are diffusible proteins that parasitize cell-envelope proteins to enter and kill bacteria. Contact-dependent growth inhibition (CDI) is one mechanism of inter-bacterial competition. Novel Toxin 21 (alternatively 16S rRNA endonuclease CdiA) belongs to a family of prokaryotic polymorphic toxin systems implicated in intra-specific conflicts. This RNase toxin found in bacterial polymorphic toxin systems, is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, with two conserved lysine residues and [DS]xDxxxH, RxG[ST] and RxxD motifs. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 4, type 5 or type 7 secretion systems. This is also referred to as the E. cloacae CdiAC. The CdiAC proteins carry a variety of sequence-diverse C-terminal domains, which represent a collection of distinct toxins. Many CdiA-CT toxins have nuclease activities. In accord with the structural homology, CdiA-CT cleaves 16S rRNA at the same site as colicin E3 and this nuclease activity is responsible for growth inhibition.	3.28374e-23
NZ_LN626917.1\|WP_000089284.1\|2864409_2865213_-\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.02571e-48
NZ_LN626917.1\|WP_000742840.1\|2868212_2869052_-\|nucleoid-occlusion-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.78633e-112
NZ_LN626917.1\|WP_000362509.1\|2871757_2873137_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_LN626917.1\|WP_001059079.1\|2865694_2865895_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.4289e-30
NZ_LN626917.1\|WP_001789343.1\|2873280_2873634_-\|ribonuclease-P-protein-component	gnl\|CDD\|234782	PRK00499, rnpA, ribonuclease P; Reviewed.	3.11548e-51

>NZ_LN626917.1|WP_000491382.1|2867306_2867660_-|DUF3147-family-protein
MFSIGSAILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFLAAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLTSLYIKHKGYRKGAIFTVVCWFVISLAIFSIRHL
>NZ_LN626917.1|WP_000779134.1|2866843_2867239_-|DUF3147-family-protein
MKLTLMKFFVGGFAVLLSYIVSVTLPWKEFGGIFATFPAVFLVSMFITGMQYGDKVAVHVSRGAVFGMTGVLVCILVTWMMLHMTHMWLISIIVGFLSWFISAVCIFEAVEFIAQKRLEKHSWKAGKSNSK
>NZ_LN626917.1|WP_001054111.1|2866021_2866591_-|helix-turn-helix-transcriptional-regulator
MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCDLFNVTLDDLVKGTIPFAPDIKAQRSLNLWTYVMLIFMTLAAILTGPLVVYWNWAWGITVIVIYGIGYYASMKIEDFKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNIKTGVLSFIAFVGAIILIALISMHLANKFL
>NZ_LN626917.1|WP_001059079.1|2865694_2865895_+|cold-shock-protein
MNNGTVKWFNAEKGFGFIEQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQRGDQAVNVQTV
>NZ_LN626917.1|WP_000089284.1|2864409_2865213_-|S8-family-serine-peptidase
MSRNLIHLSIGVAIFIISFSFYLLNQPNNWAWSSLNICINDSKPSNVKVAILDTGINNTRINNNFVTKRYNAINNHNQITTDSNHATQVASIITYGEHKEKLIGISKSVSIYDVKVLDDNLKGDIDNIIKGITWSIKNDVNIIHMSFGFQRYNKELHDAIKNAKNKGIILVAAAGNNMDDYSDYPARFNEVYSITAIDKNNKPFIYAPTKKIDFKAPGVDVYTKGSKDELLTVNGTSFAAAYFTAYLTNNLEFRNDLPHILKEYPIK
>NZ_LN626917.1|WP_000790915.1|2863641_2864391_-|hypothetical-protein
MKNKIIILFLAIIITFTYGNFAEASVVIKEANINNSNSKINTNKINENIYSKNNRNYIDNNFKSKDLNIESSLEHDLNTDKITVDASLKDNYNNKLDKTYDVKFLRIVNENDFKAEFTDQDTGEKIIYDTNEVKASIAPVVAVLVGFIAKQGLKKAIQKYGKTVVTSMIRTSPQVAAQAAKKLGYSATKHVSHGKKVFKKNSKGRPQYISVDKDGHRGGAWKGASSIKNLGSKKTRSGTYDANLKRIGD
>NZ_LN626917.1|WP_000586234.1|2863142_2863640_-|hypothetical-protein
MIINLETQQIHFDLEHEIPYFQSPEKNRIRLDIDVLNKKQISNIINVIFNNQSKTKCTFLSEYLYPVKFREKTRIGRFFNITNWYEEIHSADEKYVIATIKNIKNKDLIDYSLYIKKGLVEPFIVFYNQENIFYISNAVIDIISVSKDTLGYIKSEFNDHCASPY
>NZ_LN626917.1|WP_000672024.1|2861864_2862056_+|peptide-resistance-ABC-transporter-activity-modulator-VraH
MKFRELVKQSYEDLKNLTVTWYNVIALAIIVIVLSTVTTPIIGIPAGLLGGAYYLKRREEKGK
>NZ_LN626917.1|WP_045179660.1|2859892_2861773_+|peptide-resistance-ABC-transporter-permease-subunit-VraE
MTFNHIVLKNLRQNLKHYAMYLFSLFFSIVLYFSFTTLQFTKGVNNDDSMAIIKKGALVGSIFLFIIIVIFLMYANHLFVKRRTREFALFQLIGLTRQNILKMLALEQMIVFIITGVVGVLCGIAGAQLLLSIVSKLMSLSINLSIHFEPMALVLTILMLIIAYILILFQSSLFLKRRSILSMMKDSVKTDVTTAKVTVIEVISGVLGIAMIALGYYMATEMFGTFKALTMAMTSPFIILFLTVVGAYLFFRSSVSLIFKTLKKSKNGRVSITDVVFTSSIMYRMKKNAMSLTIIAIISAVTVTVLCFAALSKSNTDQTLTSMAPNDFNVVASQDAQQFESKLSQQHITFSKNYYETITVDNVKDQVITLENGSDSGRTNSILSANTKLTGNNAIITNTKSLPNVINIHLNNDLVVKGTKNETFRVTQEDKDKVYPLNLSFNSPVIEVSPEKYQQLKTQNNVHTFYGYDIKQTSQKKKAQAIAKQFGDKIITYDDMKKEVDATNGILIFVTSFLGLAFLVASGCIIYIKQMDETEDELSNFRILKRIGFTHTDMLKGLLLKITFNFGLPLLIAILHAVFAAIAFMKLMGNISFMPVIIVIIVYTLIYIVFALIAFVHSNKLIKKTI
>NZ_LN626917.1|WP_000154162.1|2859144_2859903_+|peptide-resistance-ABC-transporter-ATP-binding-subunit-VraD
MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISSGSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATMEENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSANDLLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVHLQSVLGGVSNDI
>NZ_LN626917.1|WP_000742840.1|2868212_2869052_-|nucleoid-occlusion-protein
MKKPFSKLFGLKNKDDIIGHIEENRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESIHEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENIQRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGKITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFEQDVTQARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
>NZ_LN626917.1|WP_000215590.1|2869094_2869814_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTVEWLAEQLKEHNIELTETQKQQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIAPSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNYLASELQLQDVSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
>NZ_LN626917.1|WP_000249657.1|2869813_2871691_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQRVSD
>NZ_LN626917.1|WP_000362509.1|2871757_2873137_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
>NZ_LN626917.1|WP_001789343.1|2873280_2873634_-|ribonuclease-P-protein-component
MLLEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKKIK
>NZ_LN626917.1|WP_000240855.1|2873754_2873892_-|50S-ribosomal-protein-L34
MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LN626917_2	2.1\|723216\|33\|NZ_LN626917\|CRISPRCasFinder	723216-723248	33	NZ_LN626917.1	1423978-1424010	1	0.97
NZ_LN626917_4	4.1\|844993\|26\|NZ_LN626917\|CRISPRCasFinder	844993-845018	26	NZ_LN626917.1	2087458-2087483	2	0.923
NZ_LN626917_4	4.1\|844993\|26\|NZ_LN626917\|CRISPRCasFinder	844993-845018	26	NZ_LN626917.1	2194569-2194594	2	0.923
NZ_LN626917_10	10.1\|2867937\|32\|NZ_LN626917\|CRISPRCasFinder	2867937-2867968	32	NZ_LN626917.1	723248-723279	2	0.938
NZ_LN626917_10	10.1\|2867937\|32\|NZ_LN626917\|CRISPRCasFinder	2867937-2867968	32	NZ_LN626917.1	736536-736567	2	0.938
NZ_LN626917_10	10.1\|2867937\|32\|NZ_LN626917\|CRISPRCasFinder	2867937-2867968	32	NZ_LN626917.1	1423831-1423862	2	0.938
NZ_LN626917_10	10.1\|2867937\|32\|NZ_LN626917\|CRISPRCasFinder	2867937-2867968	32	NZ_LN626917.1	1423889-1423920	2	0.938

1. spacer 2.1|723216|33|NZ_LN626917|CRISPRCasFinder matches to position: 1423978-1424010, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctgtgttggggccca	Protospacer
******************** ************

2. spacer 4.1|844993|26|NZ_LN626917|CRISPRCasFinder matches to position: 2087458-2087483, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cgcggccccaacacagaagctggcgg	Protospacer
** ********************.**

3. spacer 4.1|844993|26|NZ_LN626917|CRISPRCasFinder matches to position: 2194569-2194594, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
***************.*******.**

4. spacer 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder matches to position: 723248-723279, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacttgcattgcctgtagaatttct	Protospacer
******.****.********************

5. spacer 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder matches to position: 736536-736567, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
accccccaactcgcattgcctgtagaatttct	Protospacer
** ***.*************************

6. spacer 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder matches to position: 1423831-1423862, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacttgcattgcctgtagaatttct	Protospacer
******.****.********************

7. spacer 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder matches to position: 1423889-1423920, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacttgcattgcctgtagaatttct	Protospacer
******.****.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

311794 : 401145

111

Staphylococcus_phage(71.6%)

portal,transposase,integrase,head,coat,protease,tRNA,capsid,terminase,tail

attL 299566:299581|attR 328886:328901

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
299566:299581	attL	NA	NA	NA	NA
WP_045178545.1\|311794_313000_-\|integrase	site-specific integrase	A0A1X9H094	Staphylococcus_phage	5.4e-192	86.8
WP_045178546.1\|313062_313719_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_045178547.1\|313877_314648_-	helix-turn-helix domain-containing protein	U5U470	Staphylococcus_phage	2.6e-115	81.6
WP_045178548.1\|315169_315496_+	hypothetical protein	G4KNN0	Staphylococcus_phage	3.6e-50	91.7
WP_000939496.1\|315510_315651_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
WP_045178549.1\|315665_316298_-	hypothetical protein	A7TW95	Staphylococcus_phage	9.9e-113	99.5
WP_045178550.1\|316354_317107_+	phage antirepressor KilAC domain-containing protein	S4SW96	Staphylococcus_phage	7.4e-139	99.6
WP_000939495.1\|317122_317263_+	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
WP_000772137.1\|317255_317465_-	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
WP_000389906.1\|317521_317713_+	hypothetical protein	A7TWL8	Staphylococcus_phage	2.8e-26	100.0
WP_000801108.1\|317714_317942_-	hypothetical protein	A7TWL9	Staphylococcus_phage	1.7e-38	100.0
WP_001294156.1\|318001_318241_+	hypothetical protein	A0ZS12	Staphylococcus_virus	2.9e-33	100.0
WP_001025595.1\|318567_318894_+	hypothetical protein	G4KNN2	Staphylococcus_phage	5.4e-54	100.0
WP_045178553.1\|318890_319109_+	hypothetical protein	A0A068A2A3	Staphylococcus_phage	4.3e-31	97.2
WP_031880120.1\|319138_319402_+	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	9.7e-46	100.0
WP_000461464.1\|319506_319719_-	hypothetical protein	A0A2H4JBA9	uncultured_Caudovirales_phage	3.2e-15	56.5
WP_001568566.1\|319777_319915_+	hypothetical protein	Q4ZA61	Staphylococcus_virus	2.0e-15	95.6
WP_045178556.1\|319898_320066_+	DUF1270 domain-containing protein	Q9MBS6	Staphylococcus_prophage	4.4e-20	94.5
WP_000219664.1\|320066_320387_+	hypothetical protein	Q9MBS5	Staphylococcus_prophage	1.6e-55	100.0
WP_000291093.1\|320478_320739_+	DUF1108 family protein	Q9MBS4	Staphylococcus_prophage	1.5e-43	100.0
WP_045178559.1\|320753_321233_+	siphovirus Gp157 family protein	Q4ZCX2	Staphylococcus_virus	1.4e-82	99.4
WP_001043063.1\|321232_321871_+	ERF family protein	Q9MBS2	Staphylococcus_prophage	1.7e-115	100.0
WP_045178561.1\|321870_322299_+	single-stranded DNA-binding protein	A0A2H4JHI1	uncultured_Caudovirales_phage	3.9e-60	96.5
WP_045178563.1\|322312_322981_+	hypothetical protein	Q9MBS0	Staphylococcus_prophage	1.1e-125	97.7
WP_045178564.1\|322980_323766_+	hypothetical protein	A0A1W6JP61	Staphylococcus_phage	1.1e-71	56.2
WP_045178566.1\|323758_324520_+	conserved phage C-terminal domain-containing protein	A0A2I6PDW4	Staphylococcus_phage	9.5e-118	97.2
WP_045178567.1\|324532_325318_+	ATP-binding protein	A0A0H4J332	Staphylococcus_phage	6.1e-144	98.9
WP_000628833.1\|325314_325473_+	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	3.4e-22	100.0
WP_001123679.1\|325485_325707_+	DUF3269 family protein	Q9G021	Staphylococcus_phage	3.8e-35	98.6
WP_000049798.1\|325717_326122_+	DUF1064 domain-containing protein	G4KNP2	Staphylococcus_phage	1.6e-68	100.0
WP_045178568.1\|326126_326312_+	DUF3113 family protein	A0A1W6JPY2	Staphylococcus_phage	5.4e-27	98.4
WP_045178569.1\|326312_326930_+	phage protein	A0A0H3U4U9	Staphylococcus_phage	8.9e-82	96.1
WP_001666953.1\|326929_327184_+	DUF3310 domain-containing protein	A0A1X9H067	Staphylococcus_phage	4.8e-42	98.8
WP_078103524.1\|327183_327432_+	hypothetical protein	M1T302	Staphylococcus_phage	2.6e-40	97.5
WP_031795415.1\|327445_327694_+	DUF1024 family protein	B7T0H8	Staphylococcus_virus	1.6e-37	98.8
WP_045178572.1\|327686_328220_+	dUTP pyrophosphatase	A0A059T5A7	Staphylococcus_phage	2.3e-94	98.9
WP_001209216.1\|328256_328430_+	hypothetical protein	A0A1W6JQ45	Staphylococcus_phage	4.7e-25	100.0
WP_045178573.1\|328446_328692_+	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	3.5e-34	96.3
WP_045178575.1\|328688_328895_+	DUF1381 domain-containing protein	B7T0C2	Staphylococcus_virus	2.3e-18	94.1
WP_000595265.1\|328891_329041_+	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
328886:328901	attR	NA	NA	NA	NA
WP_045178577.1\|329040_329241_+	DUF1514 family protein	R9QT57	Staphylococcus_phage	1.8e-28	98.5
WP_045178578.1\|329263_329734_+	hypothetical protein	D2JLE0	Staphylococcus_phage	1.3e-69	99.3
WP_000406191.1\|329848_330301_+	nucleoside triphosphate pyrophosphohydrolase family protein	D2JLE1	Staphylococcus_phage	1.4e-79	100.0
WP_000817289.1\|330316_330661_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	4.2e-65	100.0
WP_000919026.1\|330788_331256_+\|terminase	phage terminase small subunit P27 family	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
WP_000133304.1\|331258_332953_+\|terminase	phage terminase large subunit	D2JLE4	Staphylococcus_phage	0.0e+00	100.0
WP_000365300.1\|332966_333167_+	hypothetical protein	D2JLE5	Staphylococcus_phage	1.0e-26	100.0
WP_045178579.1\|333172_334423_+\|portal	phage portal protein	D2JLE6	Staphylococcus_phage	2.2e-236	99.8
WP_000032525.1\|334415_335000_+\|head,protease	HK97 family phage prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
WP_000849950.1\|335087_336335_+\|capsid	phage major capsid protein	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
WP_001252099.1\|336370_336529_+	hypothetical protein	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
WP_001177483.1\|336537_336870_+\|head,tail	phage head-tail connector protein	D2JLF0	Staphylococcus_phage	2.1e-58	100.0
WP_000975314.1\|336856_337192_+\|head,tail	head-tail adaptor protein	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
WP_000501244.1\|337191_337569_+	HK97 gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
WP_000611451.1\|337565_337946_+	hypothetical protein	Q9MBP5	Staphylococcus_prophage	3.4e-68	100.0
WP_000570651.1\|337946_338900_+	Ig-like domain-containing protein	A7TWD0	Staphylococcus_phage	1.8e-174	99.7
WP_000442601.1\|338964_339411_+	hypothetical protein	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
WP_000571956.1\|339470_339593_+	hypothetical protein	D2JLF6	Staphylococcus_phage	2.6e-14	97.5
WP_045178581.1\|339649_344299_+\|tail	phage tail tape measure protein	A0A1V0E5H1	Staphylococcus_phage	0.0e+00	97.7
WP_043039559.1\|344298_345789_+\|tail	phage tail family protein	Q9MBP0	Staphylococcus_prophage	1.7e-296	99.4
WP_045178584.1\|345804_349590_+	phage minor structural protein	Q9MBN9	Staphylococcus_prophage	0.0e+00	99.8
WP_001153680.1\|349579_349732_+	hypothetical protein	D2JLG0	Staphylococcus_phage	1.2e-19	98.0
WP_001040260.1\|349778_350066_+	hypothetical protein	D2JLG1	Staphylococcus_phage	6.4e-43	98.9
WP_135831022.1\|350160_350529_+	hypothetical protein	G4KNR3	Staphylococcus_phage	1.2e-25	94.2
WP_045178586.1\|351288_352935_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	1.3e-294	99.8
WP_000448933.1\|352961_353951_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_000258003.1\|354245_354641_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_001217728.1\|355011_355731_+	adaptor protein MecA	NA	NA	NA	NA
WP_045178587.1\|355851_356838_+	competence protein CoiA	NA	NA	NA	NA
WP_000082722.1\|356885_358694_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	9.3e-47	24.5
WP_000896691.1\|359153_359960_-	DsbA family protein	NA	NA	NA	NA
WP_000214067.1\|359982_360348_-	truncated hemoglobin	NA	NA	NA	NA
WP_000224620.1\|360451_361045_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_045178589.1\|361230_361578_+	hypothetical protein	NA	NA	NA	NA
WP_001077683.1\|361594_362230_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_001270834.1\|362246_363056_+	NAD kinase	NA	NA	NA	NA
WP_000669938.1\|363052_363907_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_045178591.1\|363927_365313_+	magnesium transporter	NA	NA	NA	NA
WP_000395156.1\|365322_367167_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA
WP_000933195.1\|367444_368215_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_045178593.1\|368410_369496_-	AI-2E family transporter	NA	NA	NA	NA
WP_000889176.1\|371612_372371_+	esterase family protein	NA	NA	NA	NA
WP_001060544.1\|372536_373262_+	hypothetical protein	NA	NA	NA	NA
WP_000355329.1\|373263_374115_+	hypothetical protein	NA	NA	NA	NA
WP_045178586.1\|374226_375873_-\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	1.3e-294	99.8
WP_073392962.1\|376558_376663_-	hypothetical protein	NA	NA	NA	NA
WP_001792784.1\|377342_377501_+	hypothetical protein	NA	NA	NA	NA
WP_000370937.1\|378159_379017_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_000908186.1\|379084_379867_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.7e-09	30.1
WP_000334466.1\|380098_381904_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1H1Z3	Paramecium_bursaria_Chlorella_virus	2.6e-97	38.6
WP_000083795.1\|382584_384123_+	PTS mannitol transporter subunit IICB	NA	NA	NA	NA
WP_000927367.1\|384157_386290_+	BglG family transcription antiterminator	NA	NA	NA	NA
WP_001292150.1\|386301_386736_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_000648736.1\|386735_387842_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_094409958.1\|388199_389766_+\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
WP_045178597.1\|391025_391712_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001186980.1\|392228_392801_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000560872.1\|392972_393194_+	helix-turn-helix transcriptional regulator	A0A2H4JFN1	uncultured_Caudovirales_phage	2.0e-07	43.5
WP_000124597.1\|393194_393467_+	helix-turn-helix domain-containing protein	Q4ZE77	Staphylococcus_phage	7.7e-38	84.4
WP_000784893.1\|393478_393625_+	hypothetical protein	NA	NA	NA	NA
WP_045178599.1\|393617_393827_+	hypothetical protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
WP_045178601.1\|393829_394156_+	DUF1474 family protein	Q4ZE75	Staphylococcus_phage	1.2e-53	97.2
WP_045178602.1\|394220_395090_+	primase C-terminal domain-containing protein	Q4ZE74	Staphylococcus_phage	8.4e-163	94.5
WP_000356932.1\|397123_397504_+	hypothetical protein	Q4ZE71	Staphylococcus_phage	1.2e-68	98.4
WP_045178603.1\|397500_398142_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	3.6e-110	92.5
WP_001190600.1\|398489_398831_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	8.4e-58	99.1
WP_045178605.1\|398842_399421_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
WP_000853271.1\|399438_399657_+	hypothetical protein	NA	NA	NA	NA
WP_045178607.1\|399707_400235_+\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	1.6e-87	96.0
WP_045178609.1\|400237_400579_+	hypothetical protein	Q4ZE86	Staphylococcus_phage	8.4e-58	97.3
WP_001293074.1\|400575_401145_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	3.5e-101	98.4

DBSCAN-SWA_2

423493 : 437166

Staphylococcus_phage(68.75%)

coat,integrase,terminase

attL 426515:426538|attR 438602:438625

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000264071.1\|423493_424960_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5
WP_000424963.1\|424984_426526_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	32.6
426515:426538	attL	NA	NA	NA	NA
WP_045178614.1\|426619_427756_-\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	2.3e-75	42.2
WP_045178615.1\|427839_428625_-	helix-turn-helix transcriptional regulator	A0A1S5S8T5	Streptococcus_phage	1.2e-09	58.6
WP_000494396.1\|428741_428969_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000080597.1\|429014_429275_+	hypothetical protein	NA	NA	NA	NA
WP_172643983.1\|429321_429468_+	hypothetical protein	NA	NA	NA	NA
WP_045178617.1\|429460_429670_+	hypothetical protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
WP_045178618.1\|429672_429999_+	DUF1474 family protein	Q4ZE75	Staphylococcus_phage	1.0e-52	95.4
WP_045178619.1\|430063_430933_+	primase C-terminal domain-containing protein	A0A1W6JQL5	Staphylococcus_phage	9.7e-159	94.5
WP_045178620.1\|430949_432407_+	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	6.0e-278	96.3
WP_045178622.1\|432707_433070_+	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	1.3e-61	93.3
WP_045178623.1\|433071_433356_+	hypothetical protein	A0A1W6JQE4	Staphylococcus_phage	1.0e-45	92.6
WP_045178624.1\|433352_433994_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	1.9e-111	93.0
WP_001190600.1\|434510_434852_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	8.4e-58	99.1
WP_045178626.1\|434863_435442_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	1.1e-28	38.9
WP_000448775.1\|435459_435678_+	hypothetical protein	NA	NA	NA	NA
WP_045178628.1\|435728_436256_+\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	1.7e-89	97.7
WP_031783388.1\|436258_436600_+	hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	4.9e-58	99.1
WP_001293074.1\|436596_437166_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	3.5e-101	98.4
438602:438625	attR	NA	NA	NA	NA

DBSCAN-SWA_3

688224 : 702362

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663016.1\|688224_689283_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	5.7e-20	26.5
WP_000197262.1\|689441_689984_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_045178685.1\|690535_691453_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	8.2e-07	22.0
WP_031788440.1\|691543_691645_+	hypothetical protein	NA	NA	NA	NA
WP_000193750.1\|691722_693228_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_000930016.1\|693567_694068_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.7e-52	66.2
WP_001068491.1\|694087_694954_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|695755_696154_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_045178686.1\|696116_698222_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
WP_000562498.1\|698341_699313_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000876311.1\|699689_700661_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-141	80.2
WP_001245566.1\|700647_701604_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	5.5e-06	60.0
WP_000616865.1\|701600_702362_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.2e-17	30.1

DBSCAN-SWA_4

754991 : 768926

Staphylococcus_phage(66.67%)

coat,integrase,terminase

attL 745397:745411|attR 760059:760073

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
745397:745411	attL	NA	NA	NA	NA
WP_045178696.1\|754991_757364_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.5e-92	38.8
WP_001085185.1\|757385_757850_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
WP_025174610.1\|758412_759522_-\|integrase	site-specific integrase	H0UST3	Bacillus_phage	5.3e-77	44.9
WP_045178697.1\|759511_760441_-	helix-turn-helix transcriptional regulator	Q9AZH9	Lactococcus_phage	2.2e-12	35.6
760059:760073	attR	NA	NA	NA	NA
WP_000163542.1\|760628_760847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000800860.1\|760859_760997_+	hypothetical protein	NA	NA	NA	NA
WP_045178699.1\|760998_761409_+	hypothetical protein	A0A2H4JBF1	uncultured_Caudovirales_phage	1.1e-59	86.6
WP_045178700.1\|761409_761703_+	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	8.9e-24	61.8
WP_045178701.1\|761790_762660_+	primase C-terminal domain-containing protein	A0A1W6JQL5	Staphylococcus_phage	3.2e-162	96.5
WP_045178702.1\|762676_764146_+	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	2.3e-285	97.8
WP_045178622.1\|764432_764795_+	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	1.3e-61	93.3
WP_045178624.1\|765112_765754_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	1.9e-111	93.0
WP_001190600.1\|766270_766612_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	8.4e-58	99.1
WP_045178626.1\|766623_767202_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	1.1e-28	38.9
WP_000448775.1\|767219_767438_+	hypothetical protein	NA	NA	NA	NA
WP_045178704.1\|767488_768016_+\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	8.3e-89	97.1
WP_078103555.1\|768147_768360_+	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	1.6e-27	82.9
WP_045178706.1\|768356_768926_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	4.3e-99	95.8

DBSCAN-SWA_5

882420 : 894658

Staphylococcus_phage(44.44%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000140043.1\|882420_883503_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-18	30.1
WP_000786746.1\|883492_884434_+	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	9.3e-06	26.9
WP_000197096.1\|884452_886108_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_045178586.1\|886403_888050_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	1.3e-294	99.8
WP_078061146.1\|888994_889171_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	7.2e-21	96.6
WP_045178738.1\|889374_889629_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	3.4e-40	98.8
WP_045178739.1\|889640_890396_+	CHAP domain-containing protein	A0A075LZV3	Staphylococcus_phage	2.4e-150	98.4
WP_045178740.1\|890585_891077_+	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	1.5e-84	98.2
WP_045178742.1\|891898_892114_+	hypothetical protein	A0ZS61	Staphylococcus_virus	1.0e-24	98.4
WP_045178743.1\|892203_893112_+	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_001186908.1\|893758_894304_+	ECF transporter S component	NA	NA	NA	NA
WP_001151997.1\|894409_894658_-	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0

DBSCAN-SWA_6

1278611 : 1362099

104

Staphylococcus_phage(55.07%)

holin,transposase,plate,head,tRNA,capsid,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000277741.1\|1278611_1280258_-\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0
WP_001801391.1\|1280559_1280787_-	hypothetical protein	Q4ZBW5	Staphylococcus_virus	1.9e-18	67.7
WP_000765703.1\|1280743_1280890_-	hypothetical protein	NA	NA	NA	NA
WP_000857479.1\|1281557_1282517_+	alpha-hemolysin	A0A2H4PQH7	Staphylococcus_phage	1.9e-35	30.6
WP_000231331.1\|1282970_1283204_+	hypothetical protein	NA	NA	NA	NA
WP_001032820.1\|1283813_1283999_+	hypothetical protein	NA	NA	NA	NA
WP_000669541.1\|1284247_1284598_-	complement inhibitor SCIN-C	A7TWS0	Staphylococcus_phage	1.9e-20	50.0
WP_000791575.1\|1284749_1285247_-	complement convertase inhibitor Efb	NA	NA	NA	NA
WP_000584395.1\|1285503_1286010_-	hypothetical protein	NA	NA	NA	NA
WP_000739578.1\|1286681_1287068_+	formyl peptide receptor-like 1 inhibitory protein	NA	NA	NA	NA
WP_031788461.1\|1287033_1287117_+	hypothetical protein	NA	NA	NA	NA
WP_000739205.1\|1287415_1287733_-	fibrinogen-binding protein	NA	NA	NA	NA
WP_000822906.1\|1287926_1288094_-	hypothetical protein	NA	NA	NA	NA
WP_000049496.1\|1288223_1288727_-	metallophosphoesterase	NA	NA	NA	NA
WP_000659309.1\|1288719_1289307_-	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_001039660.1\|1289318_1290119_-	glutamate racemase	NA	NA	NA	NA
WP_000139709.1\|1290357_1291173_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_045178860.1\|1291172_1292939_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_000079317.1\|1292990_1293605_-	succinate dehydrogenase cytochrome b558 subunit	NA	NA	NA	NA
WP_045178863.1\|1293928_1295710_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_001791491.1\|1295875_1295971_+	hypothetical protein	NA	NA	NA	NA
WP_001018928.1\|1296033_1296348_-	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	6.6e-25	46.6
WP_001249267.1\|1296520_1298869_-	endonuclease MutS2	F2QAF8	Phaeocystis_pouchetii_virus	7.2e-15	25.1
WP_045178864.1\|1298878_1300591_-	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	6.8e-15	24.0
WP_000582582.1\|1300663_1301185_-	CvpA family protein	NA	NA	NA	NA
WP_000046704.1\|1301185_1301452_-	cell division protein ZapA	NA	NA	NA	NA
WP_001284266.1\|1301827_1302766_+	ribonuclease HIII	NA	NA	NA	NA
WP_000908974.1\|1303067_1305470_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000003566.1\|1305469_1306528_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	1.9e-31	35.5
WP_000435380.1\|1306908_1307649_-	RNA methyltransferase	NA	NA	NA	NA
WP_010956599.1\|1307888_1307996_-	hypothetical protein	NA	NA	NA	NA
WP_000670950.1\|1308032_1308356_-	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA
WP_078103527.1\|1308374_1309109_-	class B sortase	NA	NA	NA	NA
WP_001548422.1\|1309170_1310139_-	iron ABC transporter permease	NA	NA	NA	NA
WP_001220199.1\|1310148_1311027_-	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA
WP_001246693.1\|1311023_1312100_-	hypothetical protein	NA	NA	NA	NA
WP_000789812.1\|1312099_1312783_-	heme uptake protein IsdC	NA	NA	NA	NA
WP_000160848.1\|1312991_1314056_+	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA
WP_045178869.1\|1314257_1316204_+	heme uptake protein IsdB	NA	NA	NA	NA
WP_001286804.1\|1316615_1316801_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	3.0e-25	96.7
WP_031922866.1\|1316802_1316913_-	hypothetical protein	W5R8J7	Staphylococcus_phage	1.2e-10	94.4
WP_078103528.1\|1316983_1317136_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	5.8e-19	96.0
WP_045178875.1\|1317385_1318831_-	SH3 domain-containing protein	A0A0H3U310	Staphylococcus_phage	3.4e-294	98.8
WP_045178878.1\|1318811_1319249_-\|holin	phage holin	A0A2H4PQP0	Staphylococcus_phage	2.5e-70	96.6
WP_045178881.1\|1319293_1319689_-	hypothetical protein	A0EWN3	Staphylococcus_virus	2.3e-43	63.8
WP_045178883.1\|1319693_1320932_-\|plate	BppU family phage baseplate upper protein	Q4ZB96	Staphylococcus_virus	1.9e-192	91.5
WP_045178887.1\|1323919_1324219_-	DUF2951 domain-containing protein	S4V6E4	Staphylococcus_phage	2.2e-46	99.0
WP_001800921.1\|1324259_1324433_-	XkdX family protein	A0A059T7K6	Staphylococcus_phage	1.3e-27	100.0
WP_045178890.1\|1324436_1324814_-	DUF2977 domain-containing protein	A0A0E3T8J6	Staphylococcus_phage	4.0e-45	88.8
WP_045178892.1\|1324813_1326637_-\|plate	BppU family phage baseplate upper protein	A0EWM7	Staphylococcus_virus	0.0e+00	98.2
WP_045178895.1\|1326636_1328547_-	hypothetical protein	Q4ZDU1	Staphylococcus_virus	0.0e+00	95.9
WP_045178903.1\|1328561_1330463_-\|tail	phage tail protein	B7T0E2	Staphylococcus_virus	0.0e+00	97.6
WP_031792905.1\|1330471_1331419_-\|tail	phage tail family protein	E0Y3M0	Staphylococcus_virus	1.8e-182	99.4
WP_045178906.1\|1331431_1334899_-	membrane protein	Q4ZDU6	Staphylococcus_virus	4.8e-249	95.4
WP_000105584.1\|1334915_1335260_-	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
WP_001100161.1\|1335289_1335655_-	hypothetical protein	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
WP_045178910.1\|1335716_1336298_-\|tail	phage major tail protein, TP901-1 family	B7T0D7	Staphylococcus_virus	5.0e-103	97.9
WP_000188649.1\|1336316_1336700_-	hypothetical protein	A0A0F6N3L1	Staphylococcus_phage	1.5e-68	100.0
WP_045178913.1\|1336711_1337059_-	HK97 gp10 family phage protein	B7T0D5	Staphylococcus_virus	7.0e-60	99.1
WP_045178916.1\|1337058_1337361_-	hypothetical protein	A1KX32	Staphylococcus_virus	4.2e-45	91.0
WP_045178918.1\|1337357_1337690_-\|head,tail	phage head-tail connector protein	B7T0D4	Staphylococcus_virus	4.6e-53	97.3
WP_045178921.1\|1337698_1337986_-	hypothetical protein	B7T0D3	Staphylococcus_virus	1.2e-41	90.5
WP_045178923.1\|1338007_1338982_-\|capsid	phage major capsid protein	B7T0D2	Staphylococcus_virus	7.7e-181	98.5
WP_045178926.1\|1338995_1339610_-	DUF4355 domain-containing protein	I1W646	Staphylococcus_phage	1.9e-39	98.5
WP_045178928.1\|1339744_1339915_-	hypothetical protein	Q4ZDF2	Staphylococcus_virus	6.3e-22	96.4
WP_045178931.1\|1339987_1340983_-\|capsid	minor capsid protein	E0Y3K7	Staphylococcus_virus	7.6e-184	99.7
WP_052671740.1\|1341635_1342265_-	hypothetical protein	A0A2R4P8H7	Staphylococcus_phage	3.0e-37	44.1
WP_000169945.1\|1343517_1344795_-\|terminase	PBSX family phage terminase large subunit	S4V685	Staphylococcus_phage	1.3e-249	100.0
WP_045178932.1\|1344781_1345222_-\|terminase	terminase small subunit	I1W650	Staphylococcus_phage	8.3e-74	99.3
WP_000058632.1\|1345408_1345828_-	transcriptional regulator	I1W651	Staphylococcus_phage	8.1e-71	100.0
WP_000989998.1\|1345842_1345989_-	hypothetical protein	A0A059T5A8	Staphylococcus_phage	2.2e-15	100.0
WP_000595257.1\|1345989_1346163_-	transcriptional activator RinB	Q4ZBK0	Staphylococcus_phage	6.4e-22	100.0
WP_045178936.1\|1346155_1346392_-	hypothetical protein	Q4ZA37	Staphylococcus_virus	3.4e-34	89.7
WP_045178938.1\|1346384_1346588_-	hypothetical protein	B2ZYX5	Staphylococcus_phage	3.7e-29	95.5
WP_045179693.1\|1346584_1346791_-	DUF1381 domain-containing protein	Q6R823	Staphylococcus_virus	2.4e-20	92.6
WP_045178942.1\|1346807_1347068_-	hypothetical protein	NA	NA	NA	NA
WP_045178572.1\|1347129_1347663_-	dUTP pyrophosphatase	A0A059T5A7	Staphylococcus_phage	2.3e-94	98.9
WP_045178944.1\|1347674_1347923_-	phage protein	M1T302	Staphylococcus_phage	8.3e-39	96.2
WP_045178946.1\|1347923_1348286_-	phage protein	B7T0B4	Staphylococcus_virus	2.1e-46	75.8
WP_045178949.1\|1348286_1348472_-	DUF3113 family protein	Q4ZAY3	Staphylococcus_virus	7.0e-27	98.4
WP_000049798.1\|1348476_1348881_-	DUF1064 domain-containing protein	G4KNP2	Staphylococcus_phage	1.6e-68	100.0
WP_001123673.1\|1348891_1349113_-	DUF3269 family protein	A7TWN4	Staphylococcus_phage	1.3e-35	100.0
WP_000628833.1\|1349125_1349284_-	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	3.4e-22	100.0
WP_031900157.1\|1349280_1350066_-	ATP-binding protein	A0A059T7P1	Staphylococcus_phage	2.1e-144	99.6
WP_045178953.1\|1350078_1350810_-	helix-turn-helix domain-containing protein	A0A1J0MGB2	Staphylococcus_phage	1.1e-70	68.0
WP_045178956.1\|1350802_1351477_-	hypothetical protein	A0A0E3XBQ6	Staphylococcus_phage	4.4e-127	97.8
WP_045178958.1\|1351490_1351919_-	single-stranded DNA-binding protein	A0A2H4JHI1	uncultured_Caudovirales_phage	1.5e-59	98.6
WP_001043063.1\|1351918_1352557_-	ERF family protein	Q9MBS2	Staphylococcus_prophage	1.7e-115	100.0
WP_045178961.1\|1353050_1353311_-	DUF1108 family protein	Q9MBS4	Staphylococcus_prophage	2.6e-43	97.7
WP_045178963.1\|1353374_1353689_-	hypothetical protein	I1W620	Staphylococcus_phage	1.8e-51	98.1
WP_031782757.1\|1353693_1353864_-	DUF1270 domain-containing protein	B2ZYU9	Staphylococcus_phage	8.2e-22	96.4
WP_000395457.1\|1354043_1354274_+	hypothetical protein	R4IG40	Staphylococcus_phage	2.3e-35	100.0
WP_000390105.1\|1354477_1354672_-	hypothetical protein	E9LT75	Staphylococcus_phage	1.2e-29	100.0
WP_001148560.1\|1354688_1355453_-	phage antirepressor KilAC domain-containing protein	Q4ZAL8	Staphylococcus_virus	1.4e-140	100.0
WP_000132644.1\|1355529_1355742_-	helix-turn-helix transcriptional regulator	Q4ZAL9	Staphylococcus_virus	6.4e-32	100.0
WP_001118607.1\|1355894_1356209_+	helix-turn-helix transcriptional regulator	Q4ZAM0	Staphylococcus_virus	5.7e-53	100.0
WP_045178970.1\|1356230_1356689_+	toxin	B2ZYU2	Staphylococcus_phage	5.9e-83	98.7
WP_045178971.1\|1356826_1357732_+	hypothetical protein	A0A0F6N3N6	Staphylococcus_phage	3.1e-168	99.7
WP_000143212.1\|1357668_1357869_-	excisionase	Q38044	Staphylococcus_phage	5.6e-30	100.0
WP_000861313.1\|1357976_1359362_+	recombinase family protein	I1W625	Staphylococcus_phage	2.5e-265	100.0
WP_000290472.1\|1359478_1359652_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_000872158.1\|1359731_1360289_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_000843621.1\|1360415_1361555_+	nucleotidyltransferase	NA	NA	NA	NA
WP_000401377.1\|1361616_1362099_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2

DBSCAN-SWA_7

1414008 : 1422481

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000238673.1\|1414008_1414575_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	40.1
WP_045178995.1\|1414577_1415606_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.9e-61	41.1
WP_000483708.1\|1415598_1417083_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.5e-46	31.7
WP_045178997.1\|1417061_1419251_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.1e-140	39.2
WP_045179000.1\|1419243_1419915_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000848351.1\|1419916_1420180_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000174050.1\|1420179_1420884_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	41.6
WP_001010391.1\|1420887_1422012_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000861570.1\|1421998_1422481_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7

DBSCAN-SWA_8

1442372 : 1479235

Enterococcus_phage(16.67%)

transposase,holin,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001088793.1\|1442372_1443554_+\|protease	cysteine protease staphopain B	NA	NA	NA	NA
WP_000284455.1\|1443591_1443921_+	staphostatin B	NA	NA	NA	NA
WP_000184947.1\|1444156_1444978_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_045179012.1\|1444970_1445774_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_000526678.1\|1445760_1447434_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_000190608.1\|1447420_1448782_-	isochorismate synthase MenF	NA	NA	NA	NA
WP_000070966.1\|1448963_1449902_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000620943.1\|1449953_1450505_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000867359.1\|1450669_1450885_+	NINE protein	A0A060AN66	Enterococcus_phage	1.9e-07	49.1
WP_001794249.1\|1450948_1451080_+	hypothetical protein	NA	NA	NA	NA
WP_001081337.1\|1451126_1452086_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000766009.1\|1452576_1452933_+	DoxX family protein	NA	NA	NA	NA
WP_000719183.1\|1453022_1454504_-	glycosyltransferase	NA	NA	NA	NA
WP_000410718.1\|1454509_1454797_-	hypothetical protein	NA	NA	NA	NA
WP_001791476.1\|1455137_1455428_+	hypothetical protein	NA	NA	NA	NA
WP_000571183.1\|1455515_1456157_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-19	33.7
WP_000873929.1\|1456153_1456474_-	YxeA family protein	NA	NA	NA	NA
WP_045179017.1\|1456476_1458441_-\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
WP_001794574.1\|1458484_1458757_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
WP_001790623.1\|1458766_1458868_-	hypothetical protein	NA	NA	NA	NA
WP_099119695.1\|1459406_1459484_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_001033867.1\|1459784_1460387_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000214898.1\|1460401_1460578_-	YkvS family protein	NA	NA	NA	NA
WP_000668820.1\|1460776_1461763_+	lipoate--protein ligase	NA	NA	NA	NA
WP_045179020.1\|1461843_1462062_-	IDEAL domain-containing protein	NA	NA	NA	NA
WP_000287265.1\|1462271_1462841_+	competence protein ComK	NA	NA	NA	NA
WP_045179022.1\|1463329_1464841_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_045179025.1\|1464979_1466338_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_001794169.1\|1466354_1468679_-	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	4.0e-10	26.8
WP_000928413.1\|1468897_1469701_-	TerC family protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
WP_001049957.1\|1470002_1471565_-	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	2.2e-36	28.2
WP_001794242.1\|1471564_1471825_-	YueH family protein	NA	NA	NA	NA
WP_000340133.1\|1471805_1473290_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
WP_000258649.1\|1473721_1474897_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA
WP_045179028.1\|1474874_1476065_+	MFS transporter	NA	NA	NA	NA
WP_000600387.1\|1476177_1476687_-	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_045178586.1\|1477588_1479235_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	1.3e-294	99.8

DBSCAN-SWA_9

1486030 : 1588030

114

Staphylococcus_phage(76.39%)

holin,portal,transposase,plate,terminase,integrase,head,capsid,protease,tail

attL 1542194:1542209|attR 1583128:1583143

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094409958.1\|1486030_1487598_-\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
WP_045179037.1\|1487929_1488829_+	Abi family protein	NA	NA	NA	NA
WP_000897044.1\|1489067_1489310_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_000934799.1\|1489361_1489865_-	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
WP_001261460.1\|1489885_1490182_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_001052483.1\|1490425_1490617_+	hypothetical protein	U3PCX8	Staphylococcus_phage	4.9e-23	80.0
WP_001218732.1\|1490702_1491800_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_000157348.1\|1491811_1492015_-	DUF951 domain-containing protein	NA	NA	NA	NA
WP_000373076.1\|1492044_1492926_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_001573568.1\|1493079_1493925_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.6e-12	34.4
WP_000655687.1\|1494588_1495692_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	3.9e-11	28.0
WP_000175858.1\|1495688_1496849_+	PLP-dependent transferase	NA	NA	NA	NA
WP_000077312.1\|1496817_1498659_+	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_000207619.1\|1498655_1500884_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_045179040.1\|1500926_1501679_+	cyclase family protein	NA	NA	NA	NA
WP_000199080.1\|1501761_1502943_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_000245695.1\|1503482_1504616_+	low temperature requirement protein A	NA	NA	NA	NA
WP_000677718.1\|1504984_1505614_-	ABC-2 transporter permease	NA	NA	NA	NA
WP_000209478.1\|1505613_1506456_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.5e-12	28.2
WP_000698754.1\|1506480_1507194_-	DUF3169 family protein	NA	NA	NA	NA
WP_001246011.1\|1507190_1507394_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000874686.1\|1507633_1508023_+	DUF1398 family protein	NA	NA	NA	NA
WP_001794540.1\|1508121_1508346_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_078103536.1\|1508362_1509064_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_000683719.1\|1509409_1511122_-	FTR1 family protein	NA	NA	NA	NA
WP_000186228.1\|1511102_1512332_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_000737195.1\|1512328_1513183_-	EfeM/EfeO family lipoprotein	NA	NA	NA	NA
WP_045179048.1\|1513447_1513993_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000157627.1\|1514352_1515348_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_001086108.1\|1515987_1517049_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_001028218.1\|1517062_1517989_-	VOC family protein	NA	NA	NA	NA
WP_001010115.1\|1518300_1519659_+	glycerol-3-phosphate transporter	NA	NA	NA	NA
WP_000278303.1\|1519742_1520183_-	MepB family protein	NA	NA	NA	NA
WP_000651040.1\|1520288_1521644_-	multidrug efflux MATE transporter MepA	NA	NA	NA	NA
WP_000397416.1\|1521750_1522170_-	multidrug efflux transporter transcriptional repressor MepR	NA	NA	NA	NA
WP_045179051.1\|1522381_1524337_+	BglG family transcription antiterminator	NA	NA	NA	NA
WP_000050762.1\|1524341_1524785_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_000699538.1\|1524786_1525071_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_001147973.1\|1525085_1526432_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_001060938.1\|1526525_1527551_-	aldehyde reductase	NA	NA	NA	NA
WP_000280814.1\|1527866_1528889_-	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	6.7e-10	28.1
WP_001191936.1\|1528866_1529811_-	NAD-dependent deacetylase	NA	NA	NA	NA
WP_045179054.1\|1529800_1530601_-	protein-ADP-ribose hydrolase	A0A2K9L8X2	Tupanvirus	2.0e-41	44.4
WP_000731878.1\|1530601_1530934_-	glycine cleavage system protein H	NA	NA	NA	NA
WP_000240069.1\|1530967_1531969_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_001803958.1\|1532082_1532181_-	hypothetical protein	NA	NA	NA	NA
WP_000286469.1\|1532276_1533491_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_045179058.1\|1533548_1534376_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_045179060.1\|1534935_1535433_-	hypothetical protein	NA	NA	NA	NA
WP_045179062.1\|1537776_1539222_-	SH3 domain-containing protein	A0EWV1	Staphylococcus_virus	9.1e-295	99.6
WP_045179064.1\|1539202_1539640_-\|holin	phage holin	B7T0F0	Staphylococcus_virus	5.0e-71	96.6
WP_045179066.1\|1539775_1540075_-	DUF2951 family protein	M9QRV2	Staphylococcus_phage	1.0e-30	98.0
WP_045179068.1\|1540120_1540285_-	XkdX family protein	M9QX31	Staphylococcus_phage	1.4e-23	98.1
WP_045179070.1\|1540277_1540667_-	DUF2977 domain-containing protein	Q4ZCZ7	Staphylococcus_virus	5.4e-61	95.3
WP_045179073.1\|1540666_1542133_-\|plate	phage baseplate upper protein	A0A2I6PE72	Staphylococcus_phage	4.6e-254	92.8
WP_045179075.1\|1542132_1544043_-	hypothetical protein	R4WAL5	Staphylococcus_phage	0.0e+00	99.5
1542194:1542209	attL	NA	NA	NA	NA
WP_000179864.1\|1544058_1544349_-	hypothetical protein	R4WEC3	Staphylococcus_phage	2.1e-49	100.0
WP_045179079.1\|1544348_1545932_-\|tail	phage tail protein	Q4ZD01	Staphylococcus_virus	9.6e-306	98.9
WP_045179082.1\|1545940_1546765_-\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	5.9e-158	98.9
WP_045179084.1\|1546764_1552941_-\|tail	phage tail tape measure protein	R4WAN6	Staphylococcus_phage	0.0e+00	96.4
WP_000438833.1\|1552954_1553113_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
WP_000589167.1\|1553154_1553505_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
WP_045179089.1\|1553562_1554018_-	Ig domain-containing protein	A0A2I6PER6	Staphylococcus_phage	3.1e-76	98.0
WP_045179091.1\|1554108_1554750_-\|tail	tail protein	A0A2I6PE59	Staphylococcus_phage	6.1e-118	98.1
WP_045179093.1\|1554784_1555180_-	hypothetical protein	R4WAV1	Staphylococcus_phage	9.7e-66	96.9
WP_045179095.1\|1555180_1555582_-	hypothetical protein	A0A0K1LL98	Staphylococcus_phage	1.3e-65	97.0
WP_045179098.1\|1555578_1555911_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	2.0e-56	96.4
WP_045179101.1\|1555922_1556201_-\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	6.0e-46	98.9
WP_045179705.1\|1556269_1557433_-\|capsid	phage major capsid protein	A0A0K1LKB5	Staphylococcus_phage	2.8e-214	98.7
WP_045179103.1\|1557444_1558218_-\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	5.3e-132	96.9
WP_045179105.1\|1558201_1559440_-\|portal	phage portal protein	A0A2K9VBP0	Staphylococcus_phage	4.5e-234	99.3
WP_045179108.1\|1559444_1561136_-\|terminase	terminase large subunit	A0A1X9IGU0	Staphylococcus_phage	0.0e+00	99.6
WP_000778933.1\|1561125_1561431_-\|terminase	P27 family phage terminase small subunit	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
WP_000160694.1\|1561556_1561871_-	HNH endonuclease	M9QQL5	Staphylococcus_phage	2.5e-56	100.0
WP_045179112.1\|1562027_1562465_-	transcriptional regulator	A0A2I6PEN3	Staphylococcus_phage	8.8e-76	99.3
WP_078103537.1\|1562477_1563845_-	DEAD/DEAH box helicase	Q4ZD24	Staphylococcus_phage	3.3e-246	92.9
WP_045179117.1\|1563819_1564116_-	VRR-NUC domain-containing protein	Q4ZD25	Staphylococcus_phage	9.8e-47	88.8
WP_072324141.1\|1564249_1564354_+	hypothetical protein	Q4ZCF8	Staphylococcus_virus	2.1e-12	97.1
WP_045179122.1\|1564456_1566904_-	virulence-associated E family protein	Q4ZCN2	Staphylococcus_virus	0.0e+00	98.4
WP_045179125.1\|1566955_1567156_-	DUF1514 family protein	A0A0K1LL54	Staphylococcus_phage	4.9e-26	100.0
WP_045179128.1\|1567223_1567376_-	transcriptional regulator	A7TWI2	Staphylococcus_phage	4.4e-19	98.0
WP_045179130.1\|1567423_1567948_-	hypothetical protein	A0A0K1LKF9	Staphylococcus_phage	6.8e-83	87.9
WP_045179132.1\|1567947_1568142_-	DUF1381 domain-containing protein	A1KX86	Staphylococcus_virus	7.7e-24	92.2
WP_045179134.1\|1568178_1568739_-	dUTP diphosphatase	Q4ZAB7	Staphylococcus_virus	4.4e-96	94.6
WP_045179136.1\|1568731_1568980_-	DUF1024 family protein	A9CR86	Staphylococcus_phage	2.3e-33	90.2
WP_078103538.1\|1568972_1569323_-	hypothetical protein	A0A2I6PDI3	Staphylococcus_phage	6.9e-31	85.0
WP_045179139.1\|1569319_1569703_-	hypothetical protein	D2JGL4	Staphylococcus_phage	1.6e-25	54.0
WP_045179141.1\|1569699_1570110_-	hypothetical protein	A0A0H4IPW3	Staphylococcus_phage	2.1e-47	74.1
WP_078103539.1\|1570123_1570372_-	hypothetical protein	A0A2I6PF06	Staphylococcus_phage	3.7e-39	93.9
WP_045179145.1\|1570371_1570626_-	DUF3310 domain-containing protein	A0A1X9H067	Staphylococcus_phage	1.8e-41	97.6
WP_045179147.1\|1570625_1571015_-	phage DNA polymerase	A0A2I6PEL5	Staphylococcus_phage	3.6e-65	96.2
WP_001164629.1\|1571014_1571200_-	DUF3113 family protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
WP_078103557.1\|1571212_1573165_-	DNA polymerase	A0A2K9VBT3	Staphylococcus_phage	0.0e+00	98.8
WP_000645048.1\|1573232_1573790_-	DUF2815 family protein	A0A2I6PEP8	Staphylococcus_phage	1.8e-97	100.0
WP_045179154.1\|1573815_1574982_-	DUF2800 domain-containing protein	A0A0K1LKE3	Staphylococcus_phage	5.9e-220	99.2
WP_045179157.1\|1574978_1575341_-	hypothetical protein	A0A2I6PEM7	Staphylococcus_phage	9.2e-55	97.5
WP_045179159.1\|1575355_1575679_-	hypothetical protein	A0A2I6PE70	Staphylococcus_phage	1.2e-50	97.2
WP_000066017.1\|1575757_1575919_-	DUF1270 domain-containing protein	D2JGJ6	Staphylococcus_phage	4.3e-20	100.0
WP_045179161.1\|1575930_1576194_-	helix-turn-helix domain-containing protein	B7T0G2	Staphylococcus_virus	5.3e-44	97.7
WP_045179164.1\|1576616_1576814_-	hypothetical protein	Q8SDM8	Staphylococcus_phage	1.1e-25	84.6
WP_045179166.1\|1576829_1577582_-	phage antirepressor KilAC domain-containing protein	M9NTH5	Staphylococcus_phage	1.1e-139	99.6
WP_045179168.1\|1577638_1577869_+	hypothetical protein	A0A0H3U2T9	Staphylococcus_phage	7.9e-36	98.7
WP_001001356.1\|1577865_1578042_-	hypothetical protein	A0A2I6PEL1	Staphylococcus_phage	8.8e-27	100.0
WP_000272859.1\|1578057_1578306_-	helix-turn-helix transcriptional regulator	A0A2K9VBT6	Staphylococcus_phage	1.7e-39	100.0
WP_045179171.1\|1578469_1578793_+	helix-turn-helix transcriptional regulator	A0A0H3U2V8	Staphylococcus_phage	1.3e-52	99.1
WP_045179173.1\|1578805_1579267_+	toxin	W5R9J0	Staphylococcus_phage	5.1e-82	98.0
WP_001558060.1\|1579744_1580140_+	hypothetical protein	I1W601	Staphylococcus_phage	1.4e-69	100.0
WP_001795334.1\|1580228_1580375_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.2e-16	100.0
WP_000191466.1\|1580371_1580986_-	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
WP_045179176.1\|1581111_1582317_+\|integrase	site-specific integrase	A0A2I6PEZ6	Staphylococcus_phage	2.2e-222	99.5
WP_001794062.1\|1582359_1584402_-	hypothetical protein	B5WZK7	Staphylococcus_phage	1.1e-38	44.1
1583128:1583143	attR	NA	NA	NA	NA
WP_001574168.1\|1584388_1585321_-	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_000987777.1\|1585572_1587324_-	two-component system sensor histidine kinase SrrB	A0A1V0SGX0	Hokovirus	1.7e-21	33.6
WP_000064078.1\|1587304_1588030_-	two-component system response regulator SrrA	W8CYM9	Bacillus_phage	3.5e-45	43.0

DBSCAN-SWA_10

1647535 : 1655847

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001213908.1\|1647535_1648321_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
WP_000924211.1\|1648446_1649337_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001062173.1\|1649346_1650693_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	1.4e-55	34.0
WP_000683921.1\|1650806_1651907_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	3.0e-08	30.6
WP_000624581.1\|1651909_1652587_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1652717_1653824_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_045179203.1\|1654047_1655847_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0

DBSCAN-SWA_11

1725284 : 1734327

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000364542.1\|1725284_1725803_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
WP_045179225.1\|1725824_1728098_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
WP_000749802.1\|1728300_1730580_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_001160682.1\|1730854_1731115_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112045.1\|1731133_1732273_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001019178.1\|1732295_1733321_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001005767.1\|1733322_1734327_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_12

1864228 : 1925851

Staphylococcus_phage(92.86%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001573995.1\|1864228_1866646_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	98.8
WP_001025064.1\|1866934_1868116_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	9.6e-218	99.7
WP_000526541.1\|1868225_1869179_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-79	99.3
WP_000764425.1\|1869175_1869739_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	1.1e-99	95.7
WP_000757543.1\|1869857_1870259_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000266096.1\|1870831_1871659_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014937042.1\|1871661_1871781_-	hypothetical protein	NA	NA	NA	NA
WP_001196351.1\|1871892_1872894_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.0e-183	99.1
WP_001008553.1\|1873015_1873480_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.9e-69	98.1
WP_001159032.1\|1873492_1874674_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
WP_000493891.1\|1874684_1875317_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.4e-112	99.0
WP_000077342.1\|1875323_1876367_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.9e-195	98.3
WP_001261683.1\|1876847_1878350_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	5.0e-30	98.6
WP_000221190.1\|1878991_1879306_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.3e-52	98.1
WP_000989104.1\|1879305_1880598_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	2.6e-216	95.1
WP_001032833.1\|1880684_1881539_-	glucosaminidase domain-containing protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1881814_1882039_-	hypothetical protein	NA	NA	NA	NA
WP_000671059.1\|1882237_1882708_+	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	7.7e-70	85.8
WP_001152695.1\|1882820_1883264_+	competence protein ComK	NA	NA	NA	NA
WP_001030476.1\|1883250_1883694_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-49	77.4
WP_001168914.1\|1883991_1884627_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000492901.1\|1884793_1885414_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001096494.1\|1885812_1886526_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000091444.1\|1886784_1887087_+	hypothetical protein	NA	NA	NA	NA
WP_001200542.1\|1887341_1887707_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000623481.1\|1887703_1888057_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	4.2e-20	97.4
WP_000453316.1\|1888306_1889140_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-158	99.6
WP_000366165.1\|1889351_1890260_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
WP_000933819.1\|1890384_1891578_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
WP_000109909.1\|1891949_1893542_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
WP_001801476.1\|1893834_1894581_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	3.3e-139	97.2
WP_000672010.1\|1894585_1895059_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	9.5e-84	98.1
WP_000718107.1\|1895124_1895382_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000778539.1\|1895378_1896380_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.5e-183	96.7
WP_045179288.1\|1896384_1897863_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.2e-281	97.0
WP_016186903.1\|1898021_1898477_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.5e-75	94.5
WP_001794016.1\|1898779_1899430_+	excalibur calcium-binding domain-containing protein	A0A2H4PQM8	Staphylococcus_phage	1.0e-51	88.4
WP_000070654.1\|1899510_1900506_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	3.8e-74	97.2
WP_000669038.1\|1900581_1901208_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	4.5e-81	84.1
WP_000627550.1\|1901248_1901593_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	5.1e-55	94.7
WP_000414222.1\|1901690_1902263_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
WP_001093574.1\|1902411_1903779_-	FRG domain-containing protein	NA	NA	NA	NA
WP_000125075.1\|1903778_1904348_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.2e-39	54.8
WP_000747804.1\|1904540_1904987_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_001801861.1\|1905437_1905533_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA
WP_001791232.1\|1905655_1905757_+	hypothetical protein	NA	NA	NA	NA
WP_000731421.1\|1906373_1906817_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_045179297.1\|1907784_1910205_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA
WP_045179299.1\|1910916_1911366_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000095390.1\|1913034_1913334_+	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_000072622.1\|1915450_1916605_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.8e-39	36.3
WP_045179308.1\|1916597_1918154_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.2e-284	98.5
WP_045179310.1\|1918516_1919236_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	3.9e-129	97.9
WP_001038734.1\|1919405_1920122_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	6.6e-129	97.1
WP_001038730.1\|1920285_1921002_-\|protease	serine protease	A0A2H4PQN5	Staphylococcus_phage	2.4e-86	64.7
WP_001038766.1\|1921168_1921885_-\|protease	serine protease	A0A2H4PQN5	Staphylococcus_phage	5.5e-83	62.6
WP_001039022.1\|1922008_1922728_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	6.4e-124	93.7
WP_000595635.1\|1923742_1924258_+	membrane protein	NA	NA	NA	NA
WP_000711497.1\|1924504_1925851_+	DUF4041 domain-containing protein	M1NRY5	Streptococcus_phage	6.7e-66	51.3

DBSCAN-SWA_13

2246369 : 2254189

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217804.1\|2246369_2247521_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1
WP_000604508.1\|2247504_2248098_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.8e-39	44.0
WP_000446724.1\|2248448_2249117_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000941336.1\|2249118_2249538_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_001062968.1\|2249541_2250255_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000637686.1\|2250353_2250938_+	hypothetical protein	NA	NA	NA	NA
WP_001093552.1\|2251217_2251658_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_045179409.1\|2251999_2252473_+	DoxX family protein	NA	NA	NA	NA
WP_000149344.1\|2252447_2253134_+	response regulator transcription factor	NA	NA	NA	NA
WP_000244416.1\|2253133_2254189_+	two-component system sensor histidine kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LN626917

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection