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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LN626917 Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1 chromosome I 10 crisprs DinG,DEDDh,cas3,csa3,WYL 3 0 13 0

Results visualization

1. NZ_LN626917
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_1 677665-677764 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_2 723190-723274 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_3 795881-795960 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_4 844963-845048 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_5 1205271-1205363 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_6 1966724-1966851 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_7 2000846-2000929 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_8 2294039-2294240 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_9 2352615-2352740 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN626917_10 2867911-2867994 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LN626917_2 2.1|723216|33|NZ_LN626917|CRISPRCasFinder 723216-723248 33 NZ_LN626917.1 1423978-1424010 1 0.97
NZ_LN626917_4 4.1|844993|26|NZ_LN626917|CRISPRCasFinder 844993-845018 26 NZ_LN626917.1 2087458-2087483 2 0.923
NZ_LN626917_4 4.1|844993|26|NZ_LN626917|CRISPRCasFinder 844993-845018 26 NZ_LN626917.1 2194569-2194594 2 0.923
NZ_LN626917_10 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder 2867937-2867968 32 NZ_LN626917.1 723248-723279 2 0.938
NZ_LN626917_10 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder 2867937-2867968 32 NZ_LN626917.1 736536-736567 2 0.938
NZ_LN626917_10 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder 2867937-2867968 32 NZ_LN626917.1 1423831-1423862 2 0.938
NZ_LN626917_10 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder 2867937-2867968 32 NZ_LN626917.1 1423889-1423920 2 0.938

1. spacer 2.1|723216|33|NZ_LN626917|CRISPRCasFinder matches to position: 1423978-1424010, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctgtgttggggccca	Protospacer
******************** ************

2. spacer 4.1|844993|26|NZ_LN626917|CRISPRCasFinder matches to position: 2087458-2087483, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cgcggccccaacacagaagctggcgg	Protospacer
** ********************.**

3. spacer 4.1|844993|26|NZ_LN626917|CRISPRCasFinder matches to position: 2194569-2194594, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
***************.*******.**

4. spacer 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder matches to position: 723248-723279, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacttgcattgcctgtagaatttct	Protospacer
******.****.********************

5. spacer 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder matches to position: 736536-736567, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
accccccaactcgcattgcctgtagaatttct	Protospacer
** ***.*************************

6. spacer 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder matches to position: 1423831-1423862, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacttgcattgcctgtagaatttct	Protospacer
******.****.********************

7. spacer 10.1|2867937|32|NZ_LN626917|CRISPRCasFinder matches to position: 1423889-1423920, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacttgcattgcctgtagaatttct	Protospacer
******.****.********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 311794 : 401145 111 Staphylococcus_phage(71.6%) portal,transposase,integrase,head,coat,protease,tRNA,capsid,terminase,tail attL 299566:299581|attR 328886:328901
DBSCAN-SWA_2 423493 : 437166 20 Staphylococcus_phage(68.75%) coat,integrase,terminase attL 426515:426538|attR 438602:438625
DBSCAN-SWA_3 688224 : 702362 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 754991 : 768926 18 Staphylococcus_phage(66.67%) coat,integrase,terminase attL 745397:745411|attR 760059:760073
DBSCAN-SWA_5 882420 : 894658 12 Staphylococcus_phage(44.44%) transposase,holin NA
DBSCAN-SWA_6 1278611 : 1362099 104 Staphylococcus_phage(55.07%) holin,transposase,plate,head,tRNA,capsid,terminase,tail NA
DBSCAN-SWA_7 1414008 : 1422481 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 1442372 : 1479235 37 Enterococcus_phage(16.67%) transposase,holin,bacteriocin,protease NA
DBSCAN-SWA_9 1486030 : 1588030 114 Staphylococcus_phage(76.39%) holin,portal,transposase,plate,terminase,integrase,head,capsid,protease,tail attL 1542194:1542209|attR 1583128:1583143
DBSCAN-SWA_10 1647535 : 1655847 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_11 1725284 : 1734327 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_12 1864228 : 1925851 59 Staphylococcus_phage(92.86%) tRNA,protease NA
DBSCAN-SWA_13 2246369 : 2254189 10 Pandoravirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage