CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LK055284	Wolbachia endosymbiont of Drosophila simulans wAu genome assembly, chromosome: 1	9 crisprs	DEDDh,PD-DExK,RT,cas3	3	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LK055284_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LK055284_1

52446-52550

Orphan

Consensus_repeat	Method
CGTCATCCCGCTACTTGTTAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LK055284_1

>merge|NZ_LK055284|1|52446-52550|CRISPRCasFinder
CGTCATCCCGCTACTTGTTAGCGGCTGAGATACCGCGAATGAATCGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCTCGTCATCCCGCTGCTTGTTAGCGG

>NZ_LK055284|1|1|52446-52550|CRISPRCasFinder
CGTCATCCCGCTACTTGTTAGCGG	CTGAGATACCGCGAATGAATCGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCT
CGTCATCCCGCTGCTTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LK055284.1\|WP_010962335.1\|49816_50014_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010082570.1\|50081_50714_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239542
NZ_LK055284.1\|WP_010962323.1\|38639_38993_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_LK055284.1\|WP_095742612.1\|44650_45061_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|273806
NZ_LK055284.1\|WP_038198529.1\|40302_41937_-\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_LK055284.1\|WP_012673045.1\|42146_43265_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_LK055284.1\|WP_010962340.1\|55541_58058_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_LK055284.1\|WP_010082069.1\|60035_60329_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_LK055284.1\|WP_010082072.1\|59294_59459_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_LK055284.1\|WP_010082582.1\|54255_54561_+\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|259857
NZ_LK055284.1\|WP_006279726.1\|39034_40297_-\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235351
NZ_LK055284.1\|WP_095742614.1\|53007_54195_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_LK055284.1\|WP_006279880.1\|54560_54887_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133393
NZ_LK055284.1\|WP_095742611.1\|43488_44436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010962341.1\|58186_58822_+\|membrane-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_006279879.1\|54932_55529_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_LK055284.1\|WP_095742613.1\|45057_45960_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_LK055284.1\|WP_081420798.1\|59616_59964_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NZ_LK055284.1\|WP_010082233.1\|60483_60807_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NZ_LK055284.1\|WP_015588782.1\|50774_52313_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863

Protein	Function_ID	Function_description	E-value
NZ_LK055284.1\|WP_010082570.1\|50081_50714_+\|hypothetical-protein	gnl\|CDD\|239542	cd03459, 3,4-PCD, Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.	7.34203e-51
NZ_LK055284.1\|WP_010082582.1\|54255_54561_+\|integration-host-factor-subunit-alpha	gnl\|CDD\|259857	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA). This subfamily consists of the alpha subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	1.11314e-33
NZ_LK055284.1\|WP_095742612.1\|44650_45061_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	7.13604e-11
NZ_LK055284.1\|WP_038198529.1\|40302_41937_-\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	3.42139e-172
NZ_LK055284.1\|WP_012673045.1\|42146_43265_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_LK055284.1\|WP_010962340.1\|55541_58058_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_LK055284.1\|WP_010082069.1\|60035_60329_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.22691e-05
NZ_LK055284.1\|WP_010082072.1\|59294_59459_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NZ_LK055284.1\|WP_010962323.1\|38639_38993_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.64173e-16
NZ_LK055284.1\|WP_006279726.1\|39034_40297_-\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235351	PRK05137, tolB, Tol-Pal system protein TolB.	0
NZ_LK055284.1\|WP_095742614.1\|53007_54195_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.07045e-16
NZ_LK055284.1\|WP_006279880.1\|54560_54887_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133393	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.51321e-35
NZ_LK055284.1\|WP_006279879.1\|54932_55529_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	4.69003e-30
NZ_LK055284.1\|WP_095742613.1\|45057_45960_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	7.35728e-34
NZ_LK055284.1\|WP_081420798.1\|59616_59964_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	1.22278e-14
NZ_LK055284.1\|WP_010082233.1\|60483_60807_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	0.00226703
NZ_LK055284.1\|WP_015588782.1\|50774_52313_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0

>NZ_LK055284.1|WP_015588782.1|50774_52313_+|leucyl-aminopeptidase
MKNILLMFLLCFMYSLQLFATEIPAMKITISKISPDFKTIVMGLFEDNETVNDGGVLQGKQVIDNIKQFSDFNGSFGEFFSTALPEEKNVIVVGLGKKDEWNENKELNIGGKIYCELSRLKIKKAAVLIEGSAANVAYGAFLRSFKFDKYKTKKDEKITEVEEITVLVKDEQLSNAERSFEHLRQEGESIFLARSFITEPPNILYPESYADHIKKELTKLGLEIEVLDKKQMEEKKMGALLGVAQGSSKEPKLVVIKWNGASKEQKPIAFVGKGITFDTGGVSLKPSRGMESMKYDMAGSATVVGVMHALAGRKAKVNAIGVVALAENAVGGNAQRPSDVVTSMSGQTIEVLNTDAEGRLILADALWYTQDRFSPKFMIDLATLTGAIVVALGNNEYAGLFSNNDELANRLIDAGNEVNEKLWRFPMNETYDKIIDSPIADVQNIAPAGSGGDSIMAAQFLQRFVNETCWAHLDIAGTAWHEKGTDICPRGAVGFGVRLLNKLVEKYYEAND
>NZ_LK055284.1|WP_010082570.1|50081_50714_+|hypothetical-protein
MNVKNILLALLVQMIFSLPLFAADPVLLNCIKTPEIYDLDARPKNFSSSNNLRRKPGSPNSAIGELIHIVGRITDINCLPIQNAVVSIWHANSRGVNHYDKNIEDDLNFAGSGRFVVNNLGYYNFITIAPGKIGDRAPHINFLVQHPDFPEFTTQMFFADHNCADPVLEDSVSNGLASLLITPFTYSDQVIKTYTFNITLGGYNKFSNKR
>NZ_LK055284.1|WP_010962335.1|49816_50014_-|hypothetical-protein
MLDTLRQPPYHETEGIQLSSSVQIKQQENNVVGVLFLIFCTMCTLCLHNISRFLPTQAETRYLKH
>NZ_LK055284.1|WP_095742613.1|45057_45960_-|group-II-intron-reverse-transcriptase/maturase
MKRKYGRISHKNAQKSISVIFYCDDFVIIHENEEIILKAKILVEEWLETIGLKLKPSKTRISHTLRTIDETKPGFDFLGFSIRQYPTKESKKGYTLLIKPSRNSIKQHTFAIKHKLREMRGAPQEVIIRNLNPINRGWSQYYSSVVSCKIFSSLDNTIHRKLWKWAVFRHPNKGKCWIKRKYFKKYNNDNWRFMTSNKIHLIIHSDHVIKRHIKVQKTRSPYDGDWVYWGNRLREIPDKPSRVIKLLKLQQSKCGNCRLWFESDDIIEIHHKDRNRRNNMIKNLSLLHGHCHDELHRRCA
>NZ_LK055284.1|WP_095742612.1|44650_45061_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MTSTKLERSRMRRKVSRTVLKSSEEGRPSSLRQQYADETTDEDLRNIAEKSPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYKLEEGIEKGKIEVAKNLLKAGVSVNLIAESTGLSQAEIVQLKQEVA
>NZ_LK055284.1|WP_095742611.1|43488_44436_-|hypothetical-protein
MVASDSVLKRYALAYIKKLGNNNNIEGSLQYCNNTPNLTWSKENFKNVYEEFTHPNSSNRHDTGSRNDQYNAGNNAQPTGSQITHIHVHNRGLDFWDYLLLQCWMDSLFGGRGHTTVNNITNINNGNTTHQGRKENKKESEDSRKLLALGIVAAVVCVAFHAGMCFWYNSSRKVARKEEKIDYLDSKFKTFRNIEFAVGVVSLAALVACAVYPVLPVWGLAILGVNSLVCFAGGLAFHMKHEEELENIEKAKGAVDSCLRQGHGYGDSSRYDAPPPYFSQDPNTTPTAPPCSEFDNSNAKRQFENCEGFTYDRNQ
>NZ_LK055284.1|WP_012673045.1|42146_43265_-|molecular-chaperone-DnaJ
MSKKDYYDLLEVGRNASIDEIKKAYKKLALKYHPDRNPGNQEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGASGGFQGFSSAGDFSDIFNDFFGGGFGGGASRSRAKRSTTGVSGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDTCQGTGGEGAIKPVQCHTCQGSGRIRTQQGFFTIERTCTTCYGEGEIIQNKCKKCGGSGRRRDEVNISVSIPKGIEEGAKVRISGKGEAGTKGGKSGDLYVYVKIIFHKIFARNKADLHCKVPIRMTLAVLGGEIDIQSIDGAKIKVKVPEGTQTGTKLRCREKGMPYMNSHARGDLYVQVIVETLNPKNLTKKQIELLKALEEEENASVQQQSEGFFSKVKKK
>NZ_LK055284.1|WP_038198529.1|40302_41937_-|ribonuclease-J
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGVGFADETMPGVELLIADIDFIAQRKKDLLGIIITHAHEDHCGAVPHLWEELQCSIYTTKFTVNFLKEKLKEFRLEGIVPVKEVDINGSINLGPFTVEFINVTHSIPEANSILISTEMGSALHTGDWKFDPKPVVGLTSNMERLKEIGDKGDLLAAICDSTNILSKHHPESEGEIYNNIYNIIKRSKKLVAVSLFASNVARIETISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPQFLEAKEAVNFPREELVLLCTGCQGEPLAATARLAAKSHQAFKMQQGDTMIFSSKIIPGNETRAHNMLNAFIEMGVEVITEKTEHVHASGHPTREELKEMYSLIKPKMSIPVHGEYIHTHAHVKFAKECGVAKAIMIAPGDIVNLENGGKVDSIDVDYFGIDGMLLRHPESSVIKMRKRMRDAGVIVVTAVVNKKNKLLAKPKVFVPGVFEVLEDAATIQKIVKKVESLFSLQPTKKIKNKIESSILSILKEYLLKRPIIEVQIEQV
>NZ_LK055284.1|WP_006279726.1|39034_40297_-|Tol-Pal-system-protein-TolB
MKLFVHLVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSNCGLFNVKRGAEAESKSWKSDTVVTVSLSEISGSALELSFRLFDAFTKRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIAVMNQDGSNIKYLTNGDRFVSTPRFSPNGKGIVYISYANGKSYIILKNLKDNTESIISAFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQKYMAFSSDISGSQQLYVIDFTNKSKKPKRISFGSGRYATPVWSPKGDLIAFTKIQSGKFYIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTRTESPSNSKLYLVDLVKKNQKMVSTPTNASLPDWSYF
>NZ_LK055284.1|WP_010962323.1|38639_38993_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MPAKSTEDVITSLIEFANKRKITITKEEMLKIAQLVRIKLSNDEIDHYSKELTMLDWIHDTLLQVNTEGVSPMRYGSIDKDIHVRDDVINSQNIKKEILSNTKPEHGYFVVPKVISN
>NZ_LK055284.1|WP_095742614.1|53007_54195_+|MFS-transporter
MESRAKAWFIWLISNLVVIFSNMQIIYTFISVNLEKELGLTIAQVALANSAYTWTFAILQFFSGATFNVFSSKKIYFFSLSTMILGFFVLINSDNFSHLILSQVLIATGASFGFIGAAHTSSICFSAAQFGLMFSLVQTISSLSALVIQILFSNLLAEDAYWKNLIVCIILFGVLIFVLTLFCPNTLPESSSEKRTIKSSMKTVMCSILTVLKLRDIWITSVVGAITFGTFLALNTLWAPRLLGNSELNAMESGIATAILWLGLAVGAPIADRISNLFKNRKHVISAFALLQGVSIIILLYSHLTVHVVYFCMLMFGFFAGGHMLNFTVGSEVVKRKYISTSSSIINGFMFIGSGVIVSMLALFTDHKMELFAIFAILIVAGILNYATKETYSKK
>NZ_LK055284.1|WP_010082582.1|54255_54561_+|integration-host-factor-subunit-alpha
MDHVTTKDTTVTKATIAGDINQEIGLSKEDYVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVMIQARNSVSFRPSKIIKKSINN
>NZ_LK055284.1|WP_006279880.1|54560_54887_+|MerR-family-transcriptional-regulator
MNKEKLFYTIGEVAEELHLEQHVLRFWEGQFHQIKPTKRKGRRLYDRKCIEAIKKVKYMLYDKGYTIKGVQKEFGNDIKVTKNLLQELTDLRDYLTSKINNEESNKQA
>NZ_LK055284.1|WP_006279879.1|54932_55529_+|M23-family-metallopeptidase
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAIINRIYKDNNNTQNVGVNCKFVMPVKGSATSSDEMCKDGIKIAAQNGTNVVSSAPGKVIYVGKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQGQVIGSAGKSSTQDKDPQMCFTIRHNGQAVDPLMHMNCN
>NZ_LK055284.1|WP_010962340.1|55541_58058_+|leucine--tRNA-ligase
MKYDFKSVEKFYQDKWDFSVSKSGKQEKCYVLEMFPYPSGKIHMGHLRNYAIGDVIARYKRANGFEVLHPIGWDAFGLPAENAARDNNISPETWTKENIDNMRTQLKSIGLSYNWERELSTCEPDYYKHEQKFFLDFLKHGLAYRKESWVNWDPVDQTVLANEQVVDGKGWRSGAVVEKRKLSQWFLKITDFAEDLLKCLQSLKNWPEKVKTMQERWIGKSEGATIEFEVVGLNKKLKVFTTYPHTLFGASFCAVAAEHPIVQDLKNGSSVVIPVLDTGIQEIKSKRENDEKIGVYTGLNVKHPFLDKELPLYIANFVLMEYGEGAIFGCPAHDQRDFEFAQKYNLPIIPVISSAHLGVIPARDQNSYNGSQCQATQMTKEAYTGDGTMFNSEFLNGLMVSEAKEAIVKKFEEKKIGKKTINYRLHDWGVSRQRYWGCPIPIIYCKDCGTVPVPEKDLPVVLPIDVEFTSGGNPLDKHPTWKFVDCPKCGKQAERETDTFDTFFESSWYFAAFCSEDKSIDKDACNRFMPVDYYIGGIEHAILHLLYSRFFCRALTKCGYFDIKEPFSTLITQGMVCHATYKDENGKWLFPAEAKELIARGAKVQVGKVEKMSKSKKNTVDPNFIIEKYGADTARLFVLSDTPPEKDMEWSDDGVEGCSRYVNKLWRMVMQLRPVNIHYDNENVTGGLLEYRKKIHKLLHGLTDDLENCRLNCVVAKFREMTNLIAEIDVKTGKSLIDEGICILIRVIEPFIPHLAESLWQEIGGQPWPKADESLLVDDTVTIAVQINGKLRTTIKVAINLPQEELKKIAIDSVSSKIDQSKVRTVYAVPNKIVNIVI
>NZ_LK055284.1|WP_010962341.1|58186_58822_+|membrane-protein
MKIKRLCVLAVLLTSSLAGAASNSASKSEDKYYAGLNFGAGWGGGFKMKPGVVLGYHYDQNSKFELEVLSNIKSLKSIGASLLANYRFYPDLDIDPVKLYVSGGLGGYLQITPFGFGVSDTVDGDGNSSQEEKEKEEETQGAPESGGEAAGSSVVDKILSSISYKLKLGVDYEITPQIIGAVGMTMGGQLSGIKAKQIPDATLEIGVRYNF
>NZ_LK055284.1|WP_010082072.1|59294_59459_-|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NZ_LK055284.1|WP_081420798.1|59616_59964_-|IS3-family-transposase
MSSRESANKELLAAIQKIYQVSKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNDIRAILRRKFKIKKQQTDNRAVAPNILDQNFIVDQPNKVWDYLHQNQGGMAIFGSNNSHVW
>NZ_LK055284.1|WP_010082069.1|60035_60329_-|transposase
MVREYTAEFKLEAVKLANEQRKAGQTITKIARDLGIKGGLLGKWIKKHNEKKSAANAFPDVAPYDKERFDLQSKSNKGKRHLKKSPGQSKRVKYFFI
>NZ_LK055284.1|WP_010082233.1|60483_60807_+|HNH-endonuclease
MTSNKIHLIIHSDHVIKRHIKVQKTRSPYDGDWVYWGKRLRKIPDKPLRVIKLLKLQQSKCDNCRLWFKSDDTIEIHHKDRNRRNNMIKNLSLLHGHCHDELHRRCA

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Crispr_ID: NZ_LK055284_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LK055284_2

322476-322592

Orphan

Consensus_repeat	Method
AGAGATACCGCGAATGAATCGCGGTATGACGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LK055284_2

>merge|NZ_LK055284|2|322476-322592|CRISPRCasFinder
AGAGATACCGCGAATGAATCGCGGTATGACGGTTCGCAGTGGCATGACGATAAGCTCGTCATCCCGCTACTTGTTAGCGGCTAAGAGATACCGCGAATGAATCGCGGTATGACGGTT

>NZ_LK055284|2|2|322476-322592|CRISPRCasFinder
AGAGATACCGCGAATGAATCGCGGTATGACGGTT	CGCAGTGGCATGACGATAAGCTCGTCATCCCGCTACTTGTTAGCGGCTA
AGAGATACCGCGAATGAATCGCGGTATGACGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LK055284.1\|WP_010081859.1\|313693_314581_+\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293
NZ_LK055284.1\|WP_095742663.1\|332204_332831_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_LK055284.1\|WP_080717614.1\|310499_310664_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_LK055284.1\|WP_095742661.1\|328458_330912_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_LK055284.1\|WP_080717600.1\|325382_325583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010962508.1\|324804_325008_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_081420805.1\|309986_310346_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NZ_LK055284.1\|WP_095742659.1\|321089_321896_+\|folate-binding-protein-YgfZ	unknown	unknown	gnl\|CDD\|223431
NZ_LK055284.1\|WP_095742660.1\|326873_328169_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|224671
NZ_LK055284.1\|WP_010962514.1\|332842_334177_-\|trigger-factor	unknown	unknown	gnl\|CDD\|272913
NZ_LK055284.1\|WP_010082655.1\|314756_315194_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_LK055284.1\|WP_010962507.1\|324574_324808_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010962506.1\|322774_324514_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_LK055284.1\|WP_010081842.1\|320621_320912_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_LK055284.1\|WP_095742658.1\|318871_320521_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_LK055284.1\|WP_095742662.1\|330927_332205_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_LK055284.1\|WP_010082658.1\|311361_312126_+\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|274329
NZ_LK055284.1\|WP_038228111.1\|325579_326881_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223913
NZ_LK055284.1\|WP_095742657.1\|312141_313692_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
NZ_LK055284.1\|WP_010962501.1\|315186_318309_+\|DUF3971-domain-containing-protein	unknown	unknown	gnl\|CDD\|372485

Protein	Function_ID	Function_description	E-value
NZ_LK055284.1\|WP_010081859.1\|313693_314581_+\|protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	8.68495e-139
NZ_LK055284.1\|WP_095742663.1\|332204_332831_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	5.38553e-143
NZ_LK055284.1\|WP_080717614.1\|310499_310664_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.55154e-08
NZ_LK055284.1\|WP_095742661.1\|328458_330912_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_LK055284.1\|WP_038228111.1\|325579_326881_-\|membrane-protein	gnl\|CDD\|223913	COG0843, CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion].	5.54414e-05
NZ_LK055284.1\|WP_081420805.1\|309986_310346_+\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	3.72428e-13
NZ_LK055284.1\|WP_095742659.1\|321089_321896_+\|folate-binding-protein-YgfZ	gnl\|CDD\|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	2.61345e-45
NZ_LK055284.1\|WP_095742660.1\|326873_328169_-\|sodium:proton-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	8.58153e-44
NZ_LK055284.1\|WP_010962514.1\|332842_334177_-\|trigger-factor	gnl\|CDD\|272913	TIGR00115, tig, trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. [Protein fate, Protein folding and stabilization].	1.18057e-98
NZ_LK055284.1\|WP_010082655.1\|314756_315194_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	1.27931e-80
NZ_LK055284.1\|WP_010962506.1\|322774_324514_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LK055284.1\|WP_010081842.1\|320621_320912_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	4.60777e-39
NZ_LK055284.1\|WP_095742658.1\|318871_320521_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_LK055284.1\|WP_095742662.1\|330927_332205_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_LK055284.1\|WP_010082658.1\|311361_312126_+\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|274329	TIGR02866, Heme-copper_oxidase_subunit_2, cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions. [Energy metabolism, Electron transport].	3.48126e-86
NZ_LK055284.1\|WP_095742657.1\|312141_313692_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
NZ_LK055284.1\|WP_010962501.1\|315186_318309_+\|DUF3971-domain-containing-protein	gnl\|CDD\|372485	pfam13116, DUF3971, Protein of unknown function. Some members of this family are related to the AsmA family proteins.	1.70856e-10

>NZ_LK055284.1|WP_095742659.1|321089_321896_+|folate-binding-protein-YgfZ
MSYIPFLSRGVIVLYGPDNRDFLQGIITNDINKLDSQKAIYSLLLSPQGKYLYDFFLIEYGKYTLLECENMHLQQIIEKLDLLKTYLRVKIKDVSALYKVGVLFNTKLAECSSKSQVIFQDPRHKLLGMRIIHKDEMKEPVGDFTQYEKVRIQNLVPDGAKDMVQNSSFPLQFLIDKVNGISFNKGCYIGQEVVNRMSRQEIFRRKLYLVEGDNALPDIGTKVTNENNEEIGELRSSVDNIGFALLNTGKSHANLYAGGVKCVKTLKS
>NZ_LK055284.1|WP_010081842.1|320621_320912_-|co-chaperone-GroES
MSSISLNVLDDSVLIKPISEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERVALTVKAGDKVFYRQWAGTEIEHNNEKLIVMKESDILAVIK
>NZ_LK055284.1|WP_095742658.1|318871_320521_-|chaperonin-GroEL
MTNVVVSGEQLQEAFREVAAIVDSTVAITAGPRGKTVGINKPYGAPEITKDGYKVMKGIKPEKPLNAAIASIFAQSCSQCNDKVGDGTTTCSILTSNMIMEASKSIAAGNDRVGIKNGIQKAKDVILKEIASMSRTISLEKIDEVAQVAIISANGDKDIGNSIADSVKKVGKEGVITVEESKGSKELEVELTTGMQFDRGYLSPYFITNNEKMIVELDNPYLLITEKKLNIIQPLLPILEAIVKSGKPLVIIAEDIEGEALSTLVINKLRGGLKVAAVKAPGFGDRRKEMLEDIATLTGAKYVIKDELGIKMEDLTLDDLGTAKNVKITKNNTTVVSENSDSDSVKARIEQIKSQIETSTSDYDKEKLRERLAKLSGGVAVLKVGGATEVEVKERRDRVEDALHATRAAIEEGIVPGGGVALLYASSVLDKLKGASDEEQIGINIIKKVLSAPIRRLVKNAGLESAVIIDYLIKQNDKELIYNVEAMNYANAFTAGVIDPAKVVRIAFETAVSVASVLITTESMIVDVPSKENASSPMGAGEMSGMGGF
>NZ_LK055284.1|WP_010962501.1|315186_318309_+|DUF3971-domain-containing-protein
MLKKITILFSVALLFILCFFIFFKPLEININYIDFYVKHKISKIFVGSSVNMENTSVVWQKDGKDPYLVITDLAIANPNFTIKVPELFVHFKLSSLFKASTNLSQVSADNVHVCIKREETNVNPQNSLDLLDNHYLSSNRLPSVSFQRVTLESRKKETSSQATWMTRTSAGMTGKKDTGMTGKNFKMTESSAKNLLKTIREFFFDLNADSKIEFTNIAIDKSTEDEFFIDKLYIGKGEDFNVLDIHVNTKDGKGFLDDLSITIKNRNNLLNVYGTFYDLKLGLLSKFSTLVKSYNLDKNIGFKGSFSVKINKKDEIVDGNIYVLNTENYLNKNLALTNVNINLTYSDGIISVKNFHFKLNDTYLSLIGKMNFSTSHALLRINISKFAAKDLCTYIPDSVVNSKFKSWYCDNIDGDVLNTIVSFNGKINNLVDDDLSDIVIVADIENGSVKFDEDFEQVKELKGDLIIKNNDLEITVNSAKFQNFTVNGGDIEMKSLNKEDSVLTINGKAVSDAYGLYEPIRFKLDDVVKVERDKVSGMAKSVFNFRIFNLNADDKKVDFSANFHSEIDNLAVYNASLGKYDIKLSFGSDFIDLNGSGMVNNTQLLFDLKSSNRNESFAWNLTGDLPAQIFNFDSGYVSANLESVINQDKTGYVNGDIDLSEFESHSSYLGWKNRFEDHNKILFSTRLKGAGELLVDKLDIVGNDLDIKFSGRVENGNLYLNSSSFKLPDNDFSIEIESGKEKNAITIYGEEINLSDILGLLGKNSNGLNKDIEISMNVDNVIMKEGIVIKNAKLNVTCTKGNCNGSQFTGQFLEDSSNILAEYSGIGLEIYADNSGMLLRSLGISKSIKNGKLSFYLSPQRESGEHYGTLSISNFYIKDAPLLTTLLSMSSLPGIVNAIKNEGVYFYKCNAPFSYKDGTIEIEESWLEGAELGISTGGKLDIRNYKFQVAGQVIPAYLINKSLLKIPIIGKLLTGGKSRGIVSIDYKASGDDKNNNVSVDLISSLTPNLLKRLLGVFDRIMTKTNESGLKGGVKKKFGSI
>NZ_LK055284.1|WP_010082655.1|314756_315194_+|ribonuclease-HI
MSKKEVIIYTDGACSGNPGAGGWAAIILFQDYRKDIYGREENTTNNKMELTAVINGLKVLKFSCNINLYTDSLYVKHGITEWINKWKMNGWKTSNKKSVKNMELWKELDNVASQHEIDWKWVKAHSGDKYNEEADSLARKAIIDA
>NZ_LK055284.1|WP_010081859.1|313693_314581_+|protoheme-IX-farnesyltransferase
MYTSVLLNVESTILDFWRLLKPRIMYLVVFTAVASMVTAPGSMHPFLALISLICVALGSGSAGAINMWYDRDIDLLMERTKNRPIPSGRVSAESALEFGITLGILSVFIMAIAVNYISAALLAVSILFYVFIYTIWLKRRTPQNIVIGGAAGAFPPMIGWAAVTNSVSWESFILFLVIFMWTPPHFWALSLNKSEDYAKASIPMFNIVYGPEKTRKYILIYSVLLVLTSLLPALFLKKALLYLSMATFEGCVFIWYAVSVMKFKNHSSQKKMFSYSISYLFSLFASIIFCSIDLF
>NZ_LK055284.1|WP_095742657.1|312141_313692_+|cytochrome-c-oxidase-subunit-I
MSDVPKGIKRWLFSTNHKDIGTLYIIFSILAGIIGGLLSVIIRTQLMHINILNNNYQLYNVMVTGHALIMVFFMIMPALMGGFGNWFVPLMIGAPDMAFPRMNNLSFWLLVSSFILLILSVFIGEGPGTGWTLYPPLSQVMSHPSAGVDIAILALHVAGMSSIVGAINFIVTIFNMRTKGMSLTKMPLFVWSVLLTAFMLIVALPVLAGAITMLLTDRNIGTSFFDPAGGGDPVLFQHLFWFFGHPEVYVIIFPAFGIISQVVSTFSHRPVFGYIGMVYAMIGIAVFGFMVWAHHMFTVGLSADAAAFFSTTTIFIGVITGVKVFSWIATMWGGAIEFKTPMLFALGFIFMFVGGGITGIILSHGGIDKLLHDTYYVVAHFHYVMSLAALFGAFAGFYYWIGKMSGKQYNERLGQIHFWLTFISTNITFLPQHFLGLAGMPRRIPDYPDAFIPWNYISSIGSYMSFVSVMFFVFIVIHLFKWRKKAGDNPWEGDTLEWTVSSPPPFHTFEKPPVVK
>NZ_LK055284.1|WP_010082658.1|311361_312126_+|cytochrome-c-oxidase-subunit-II
MVKLFALLIIFYSNISVASAPTSWQFGFPAPATEVMEAVVRSHSFVMLVMVTIMLFVWALLAYIAFRFRKSKVTNISKTTHSVPLEIIWFVIPTIIVGILAFENAKLLKLQEEIPKADITLKVIGHQWYWSYQYPEYQGVSFDSYIKGKEDFIEGDLKLFSVDNNIILPVNTNVRLQVTAGDVIHSWGVPAFGVKIDAIPGRLNEAWFNIKKPGVYYGQCYELCGQGHGFMPIVVEAVSKEDFNQWIENRKLVS
>NZ_LK055284.1|WP_080717614.1|310499_310664_+|IS3-family-transposase
MSHKGCCYDNSVVESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NZ_LK055284.1|WP_081420805.1|309986_310346_+|IS3-family-transposase
MSSRESANKELLADIQKIYQASKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNDIRAILKRKFKIKKQQTDNRAVAPNILDQNFIVDQPNKVWDYLYKNQRRMAIFGNNNRSIFTHGS
>NZ_LK055284.1|WP_010962506.1|322774_324514_-|single-stranded-DNA-specific-exonuclease-RecJ
MLLEIEKRSITNALWKLQEADQRQILTLTQRFELPEILARILVTRGVNIENASDFLYPLIRSLLPDPFHLLDMDKAVSRIIRAIKNDENLAIFGDYDVDGATSSALINRYLRAIDIHSIIYIPDRVDEGYGLNTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKAFGLDIIVVDHHLGTEKLPSAVAVVNPNRLDESSPYNNLAAVGVSFLLIVALNKSLREQGFFTNKKEPDLFDLLDLVALGTVCDVMQITGLNRALVSQGLKVMSTRKNVGLRVLFDALGILEKPSVSRLGFSIGPCINAGGRIGEASLGARLLSTDDDEEAHSIALKLIDLNNARKVLENEALLEATAQAEKSAQSGANFIMISGNWHQGIIGIIASRLKEQFHLPTVVISLNNGIGKASCRSILGVDIGAAVLSAKFINLIIEGGGHSMAAGFSIKEDKINDLHDFFTERFSNSINEKTLKADSIVTAKAINLSLWNQLQRLGPFGVGNPEPRFIIQGAKIRKPEVIGVDHIKCFIADDNVMVRAIAFRSANTHLGSAIMQGNVKAILGKISMNYWNGNEFVQFLIEDVLTIS
>NZ_LK055284.1|WP_010962507.1|324574_324808_-|hypothetical-protein
MTPFFFLDPNSQGTGMTKKGGTGTTKWSVCFCHPMIAKKTWSRAGMTPKGLLPSWMETSVSYLDDTFFLLSLGYAEV
>NZ_LK055284.1|WP_010962508.1|324804_325008_-|hypothetical-protein
MSSQCPDTGIQHFTQSHQERCILHNTFMLTNLIKFLDPSVSYSDDKKRSTGMTGEGGYLDDIIGALG
>NZ_LK055284.1|WP_080717600.1|325382_325583_-|hypothetical-protein
MTHRNKKNFLDKLRQPPYHETEAIYLSSLYRLNDKKTHVSGVPCLIFCTMCTLCLYKISKFLPNIS
>NZ_LK055284.1|WP_038228111.1|325579_326881_-|membrane-protein
MLNIQDNAPLCRKWMFLAVCALACSGLLSIIVIFLRLPFISSLVPSAQYIFDNALVIHVNLSILVWMCSIISLLFIINLQNTNSWFNFSWVLSTLSMLLMFISAFVPNTEVIKSNYIPVLQNKLFLLGLSLFIASILVNTMLAYTSKKEVSFLSVGQIGLVIILVSSFLCFVLAYNNMPPGLYHSDNNLFYEYLFWGGGHLLQFAFTQGMFLVYLIMLSSNDISLASNNKITILPLFINTILAVGAPFVYFVYPVDSAKLIQFFTWHMRIAGAVLPCFLIILVCYNIRTFINDKSNYLLHSFLLFTYGDVLGVLTIEGNVTIPAHYHGSVVGITIAFMNFVYWMLPKLNFKEIKSSMVRLQIYAYSIGHFLHITGLVWLGGYGALRKVADLPSISSMLARTCFIIGGAISVVGGMLFVIIVLLHLLKGKARTN
>NZ_LK055284.1|WP_095742660.1|326873_328169_-|sodium:proton-antiporter
MFYLTNFLPILLFLFLFVGSGIYFTILGVSNAFYQLSPLVAIVPAIALGWVLYKGNTEEKMYAFLDGVRDRNIITMCIIFLLAGAFSEVTKAIGSADATVNLALLFIPTQFLLIGLFFVAAFISTVIGTSMGTIATIAPIAVELTQAGISPSLGVATVVGGAMFGDNLSIISDTTIASVMSQKADIKKKLKLNAKVALIASIFTIIILFYSSSNSAAISVKEYSLLLVTPYIILILLANFGINVFTALVLSITFAGIIGFINNNNHGLLFLSQNITKGFMSMHEIMLLSLMVGGLSGLVGKNSKELADKLSSWVMIQRGGQKTAQLFIAKIVSIFDILLANNTIAIIFSGEIARDIAKKYEIPPHYSAAWLGIFSCVFQGLIPYGAQLLLASTIAGVSPLAVVPHVYYCYVLGIIAVLYIVLNKIEKKDCA
>NZ_LK055284.1|WP_095742661.1|328458_330912_-|endopeptidase-La
MNIERAVSSSFTALPVLPLRDVVIFPNIMVPLFIGREKSVNALEYAISSSNHQNEVFLVAQKDGSVDNPEPEDLYEVGVLASIVQPLIKLPDNAVKVIIRGIRRGRVVEYISSHTLLQARVELDNYYKEDEDNIDLEALRRSVVDAFDSWCKLNKKNQPEVAINSIDQIKEVDQLVDTVASHLNIKVSDKQSILEAYDPEERLKKAFAFIEREMSILNAQNRLYKTIKSQVESTQKVYYLNEQLKAIQKELGEFENGDEGNILNEFEKKINETKLSQEAREKAITDLKRYKKMNPISPEATVISSYLHWLLELPWGKYKDAKINLNAAKKILDENHYGIEKVKDRIIEFLAVLKRVKEIKGPILCLVGPPGVGKTSLAKSMARAVGRDFVRIALGGVRDESEIRGHRKTYIGSMPGKIIQHMKKANSCNPLFLLDEIDKMGSDSRGDPASALLEVLDTEHNKHFTDHYLEVEFDLSSVMFVATANSLNLPHPLRDRMEIIQLSGYTEDEKISIATHHLIPKLKKEHGLYQKEWDITNEALYELIRLYTRESGVRSMERELAKLMRKAVKEILTDKNKKISVGVDNLQDYLGVRKYTFGIAENESLVGIVTGLAYTETGGDILMIESVLIPGKGEIKYTGKLGEVMQESIKAAYSYIRSNCLFFGIKPEKFQNNDIHLHVPEGAVPKDGPSAGGAVCTSIVSLMTNIPVNKNVAMTGEVTLRGRVLAIGGLREKLLAALRGSIKTVIIPSENEKDMQEIPASIKEGINVVFAKNIDEVMKVALMHPTTPINGDDNQNSVPSSIENKDDTFPISETLKH
>NZ_LK055284.1|WP_095742662.1|330927_332205_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MDNNNDLHYCSFCNKAQDEVDKLITNSSDGLKVFICNECIELSHKAISQKKDRSFNSDRISDMKLLLKKPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLIGPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQRGIVFIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQVDTSNILFICGGAFEDLDKIIEARKKGTSVGFGADISQSKEQKKKNALHDVQPEDLIKFGLIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFSKVNLEFSDEAISAIAKKAISYKTGARMLRAILESLLLDIMYTSGNGGFEGSTIVITKKMVELGKATVNHNNNGNVITVND
>NZ_LK055284.1|WP_095742663.1|332204_332831_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MTLIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDICMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRVKKKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEARKIGLIDRVIAERTDIEIENIKVKQKVG
>NZ_LK055284.1|WP_010962514.1|332842_334177_-|trigger-factor
MSNNIPQNTVEVSSVYTYKELSIDKLKYEYEITVGSDYIKQKVNSRLQEIAENAKSPGFRAGKMPYDLVVANYKNEALEYVINNTIDYCSSDLMKKIEVKSHIYPKVDVISLPDLGKENEEGNFVYKLSFESMPEVPVIDLDKINLKKIEAKIEEEDIKEFIDSIKTKFPNFASVDDASYQAKDGDKLIIDFEGRIRNKLFQGGSSKNFAVNLGSGTFINGFEDQLTGMKKGETKNFKLKFPENYQAISLAGQEADFSVRVNEIQIAKDFENDDEIAKSIGFKDYSLLINHAKKMIGDQCTEMRNLLIKKELFDYLDANYSFDLPTDIVKQEQQRMEGELGAQNDSRKEAEKRVKLAMLFMKFSAEHKISLTQNDVLSVIVNQYVSKDVQFDRVLKHFESNKQFQELVRGQALEYKVTDYIIEKVSKEEQIVSVKELKELFDNI

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Crispr_ID: NZ_LK055284_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LK055284_3

441027-441131

Orphan

Consensus_repeat	Method
GAGGAAGAAGAGTTTTTTGATGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LK055284_3

>merge|NZ_LK055284|3|441027-441131|CRISPRCasFinder
GAGGAAGAAGAGTTTTTTGATGCTATGGAAGCTGTTTCTAATGTAGAAGAAGGGAATAATTTAGGTCTTGCTACTTCAGAAGAGGAAGAAGAATTTTTTGATGCT

>NZ_LK055284|3|3|441027-441131|CRISPRCasFinder
GAGGAAGAAGAGTTTTTTGATGCT	ATGGAAGCTGTTTCTAATGTAGAAGAAGGGAATAATTTAGGTCTTGCTACTTCAGAA
GAGGAAGAAGAATTTTTTGATGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LK055284.1\|WP_070356812.1\|447868_448345_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223783
NZ_LK055284.1\|WP_007548816.1\|426308_426932_-\|heme-ABC-exporter-ATP-binding-protein-CcmA	unknown	unknown	gnl\|CDD\|237421
NZ_LK055284.1\|WP_010082641.1\|433059_433488_+\|protoporphyrinogen-oxidase-HemJ	unknown	unknown	gnl\|CDD\|367596
NZ_LK055284.1\|WP_006014985.1\|447149_447377_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|181027
NZ_LK055284.1\|WP_022626288.1\|446364_447090_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_LK055284.1\|WP_095742682.1\|443419_445759_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_LK055284.1\|WP_006279887.1\|432023_433004_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|274473
NZ_LK055284.1\|WP_010082661.1\|426935_427367_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_006279888.1\|430691_431615_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_LK055284.1\|WP_095742857.1\|427557_429360_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_LK055284.1\|WP_095742680.1\|435892_437359_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_LK055284.1\|WP_010962578.1\|434433_435753_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_LK055284.1\|WP_010962584.1\|447380_447860_+\|ATP-synthase-F0-subunit-B	unknown	unknown	gnl\|CDD\|184061
NZ_LK055284.1\|WP_010962582.1\|445871_446135_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_022626285.1\|449930_450959_+\|heme-A-synthase	unknown	unknown	gnl\|CDD\|367131
NZ_LK055284.1\|WP_095742685.1\|453055_453811_-\|aankyrin	unknown	unknown	unknown
NZ_LK055284.1\|WP_095742681.1\|437535_440871_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NZ_LK055284.1\|WP_095742683.1\|448350_449949_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133049
NZ_LK055284.1\|WP_038198717.1\|429421_430684_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_LK055284.1\|WP_095742684.1\|450907_452983_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|227111

Protein	Function_ID	Function_description	E-value
NZ_LK055284.1\|WP_070356812.1\|447868_448345_+\|hypothetical-protein	gnl\|CDD\|223783	COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion].	1.88218e-07
NZ_LK055284.1\|WP_007548816.1\|426308_426932_-\|heme-ABC-exporter-ATP-binding-protein-CcmA	gnl\|CDD\|237421	PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional.	1.78036e-108
NZ_LK055284.1\|WP_010082641.1\|433059_433488_+\|protoporphyrinogen-oxidase-HemJ	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	8.23334e-58
NZ_LK055284.1\|WP_006014985.1\|447149_447377_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|181027	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated.	7.57609e-21
NZ_LK055284.1\|WP_022626288.1\|446364_447090_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	2.52815e-54
NZ_LK055284.1\|WP_095742682.1\|443419_445759_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_LK055284.1\|WP_006279887.1\|432023_433004_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|274473	TIGR03182, Pyruvate_dehydrogenase_E1_component_subunit_alpha, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	0
NZ_LK055284.1\|WP_006279888.1\|430691_431615_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.32175e-83
NZ_LK055284.1\|WP_095742857.1\|427557_429360_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_LK055284.1\|WP_095742680.1\|435892_437359_-\|MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	5.8077e-90
NZ_LK055284.1\|WP_010962578.1\|434433_435753_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_LK055284.1\|WP_010962584.1\|447380_447860_+\|ATP-synthase-F0-subunit-B	gnl\|CDD\|184061	PRK13454, PRK13454, F0F1 ATP synthase subunit B'; Provisional.	3.17953e-14
NZ_LK055284.1\|WP_022626285.1\|449930_450959_+\|heme-A-synthase	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	1.98097e-105
NZ_LK055284.1\|WP_095742681.1\|437535_440871_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_LK055284.1\|WP_095742683.1\|448350_449949_+\|glycosyltransferase	gnl\|CDD\|133049	cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of glucan.	7.73664e-158
NZ_LK055284.1\|WP_038198717.1\|429421_430684_+\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.24348e-83
NZ_LK055284.1\|WP_095742684.1\|450907_452983_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0

>NZ_LK055284.1|WP_095742681.1|437535_440871_+|isoleucine--tRNA-ligase
MKSKHYPDTVSSPDFLSLEKEIIKFWQENKVFERSVEERSKDNCFVFYDGPPFANGLPHYGHLLTGFIKDAFARYQTMLQKRVERRFGWDCHGLPAEMGAEKELGISGRTEIEKFGIDKFNDHCRTSVMKFSSEWEKYVNRQARWVDFHNDYKTMDKSFMESVMWAFKQLYDKGLVYESVRVVPYSWACETPLSNFETRLDNAYREKVSKAVTVAFELLENPQQFKSVKRKCKLLAWTTTPWTLPSNLALAIGKDIKYCAVSVHPLMSFQRVTLESISGSQCLGTGMTGSSEGSSMNGEIYIFAESYLEKFISHSEQNNIPYENCNIKLKANDLAGLSYKPLFDYFKDTKNAFRVFIADYVTEEDGTGVVHTAPGFGEEDFYLCQSHDIPVICPIDNSGKFTAEVSDLAGVHVFDANDTVIKKLKGQGSWFKTEQYIHNYPHCWRTDTPLIYRTMPSWYVAVTKFKSRMVELNKRVNWIPNHIRDGQFGKWLEGAHDWSISRNRFWGTPIPVWKSDDARYPRVDVYGSIEELERDFNVKIDDLHRPFIDTLTRLNPDDPTGKSVMRRVPDVFDCWFESGSMPFAQIHYPFENKEWFESADFITEYIAQTRGWFYTLFVLSTALFNREPFKNCICHGVVLDVKGQKLSKRLNNYADPMEVFDRYGSDALRFLMLSGSIICGGNLLLDKEGNSIRDVLKNVIKPIWNSYHFFTMYANADGIKAEVCKDYQSTIDRYMISKCFEAVESIQASMNSYSSQEACKILIDFFEVLNNWYIRRSRERFWKSDLDHDKTDAYNVLYTVFYYILRAAAPLLPLITENIWQGLKYEETSVHLANFPQLEKFDSQLIAKMDLVREVCNSALSIRNTFNIRIRQPLGSMIIYHQSSCSFLEGEPLSVIPEFSPVIQVADTGIQCAADSNEYQEMIKDEVNVKSLELVNRLEGIASLELKLNFPLLGKRIPDKIKKLVQYVKEGKWKQVENEQIFLGDESENYIIEKGEYELLLKANSEYSSVFDNNKGIVILNTELNDELILEGLARDVMRLIQETRKQADFHISDRIRVIIKTEEEKIKEAINTWFEYIKEQTLALSLDINTEIGTNFYSKEYQDLSVSIER
>NZ_LK055284.1|WP_095742680.1|435892_437359_-|MFS-transporter
MDQKTDKFPQFLKMLCFVEMWERFSYYGMRALLVLFLTSHLGFTDERAFTIYSLFAATGYAIPILGGFLADKLMGFRNMVLLGGIVMIAGHACMSLVKFEPGLLYLGLSLIAIGTGMFKGNVTNLLSSCYGKDDPERSRGFTLFYVGVNIGAILASISCGYVAHLFGWHYGFGLAGIGMSIGLIFFLKFQNLLGDSGLSPYPELMNKRILGIKIFGIVLIGSFLSSSIIAKMLIHSEFFTNMLIFIGITALGIFIYIISKLSAEQRRKLVALSILVVFFLCFFALEMQLGSLVNLFTERNVINNVLGITIPASVSQAINPLSIIIFGFLFGTYMKFRQKYATSMFTLGLLTMAMCFFTLYIGCLNSNIEGKVEYLYLIIAISFMGLGELCIAPLVQEQATTLAPKNLRGVVMGIVMLSLASSNLAGVAISKFMSVPSVNGKINYLESLEIYKEGFLKVGIFNLMLVIVFLFFFNFIHKVVTNSSCTKN
>NZ_LK055284.1|WP_010962578.1|434433_435753_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MKGLYIKTYGCQMNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGKIHSLRKEMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRSKGHVINTDFPEVAKFDKLPDECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREALKLVANGANEINLLGQNVNAYHGECEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKLKPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSEDKYRDKIVNVKVLEARQSSLLGCAFH
>NZ_LK055284.1|WP_010082641.1|433059_433488_+|protoporphyrinogen-oxidase-HemJ
MNYYHWLEAFHVISVIMWMAGMLYLPRLYVYHATVKPGSENDSLLQTMEKRLLRYIINPAMLFSLGLGITLMVIREAYREGWFHVKAFAILLMLIIHMLLAKYRKNFAMGSNKKSHIYFRVLNEAVTVLIIVIVIMVVVKPF
>NZ_LK055284.1|WP_006279887.1|432023_433004_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MKAENFTKEQIIGFYRKMLLIRRFEEKAGQLYGMGLIGGFCHLSIGQEAVAVGTQAASKLGDAFITSYRDHGLMLACDSDPNVVMAELTGKETGCSKGKGGSMHVFDVEKKFFGGHGIVGAQVPIGTGIAFANKYKKKDNVVFTYFGDGAANQGQVYESFNMASLWELPVVYIIENNEYAMGTSVQRSTLVTELYKRGESFGIPGKQVDGMDFFSVYEATSEAAEHTRSGKGPILLEMKTYRYRGHSMSDPATYRLKEEVEDMKQNHDPISTLKKYMTDNKMASEEECKVIDKEIRDLVKKSEDFAKNSKEPSVDELYTDVYKFVS
>NZ_LK055284.1|WP_006279888.1|430691_431615_-|RluA-family-pseudouridine-synthase
MLQSIKTILIEDDNVRLDRYIRRIFPDLKQSVIEKSLRKGLIKVDDCKAKSSDRVNSGQTITLKHLNYIENANSDRKYNEKLVNLLRENILYEDEYILAINKPAGVIVQGGVKVKISMSDLLDQIREGETFKIVHRLDRDTSGVIIFARNANVARYLMEEFKGRRVKKTYLALTSGIPSKDSGTIDYPLVKKYVSGQEKVVVDENSPQNATTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAHINCPILGDGKYGGKKAFIDGIANKIHLHSHSLSLKLPNNKEITITAPITKHIEKSIEALFFD
>NZ_LK055284.1|WP_038198717.1|429421_430684_+|MFS-transporter
MNNIQKAILSGMICNMIVWYELTLFGVLTDTIINVFFPSEDHYLSTLKFLGVFAIGFAFRPIGAVIFGYMGDKYGRRKTLLTSVILISISSTIMGIIPGYKEIGLLSPVLLVFCRIVQGITAGGETSINTAFTIEHSKDKKNLGFLGSMKPFSGALGTLLCITMIFICKRVTGENYEIWGWKLLFYFCFFWGTIGFLTRYILKESLAYKTNKYANNLAHSPLLELVRNYKRPLIISINLGIAQNAIVYAAIMFYNISIKELVILSISVKDLMRIVIQVVFAASAVLFAILSDKVGRKRVMIPVLIMLSLIGTCVLPLLSSVNHYVVIITYLLITIPVGASFGIYGSVICELFPTKVRCTGVSLANNISAGIFGGLSPYICMWLIEKTETKLAAGIYLTACALISLISVLQIKAKDRKVDW
>NZ_LK055284.1|WP_095742857.1|427557_429360_+|aspartate--tRNA-ligase
MNCYKTHTCEELRKNDVEKEVTLSGWLYRKRDHGNLIFVDLRDFYGITQLVFNNDKDFFDEISNLKLESVITVTGIVETRTEDTVNSSISTGEIEVIVNNLRVESEVEFHFDEEIAKEERSILASITGEQEYPENMRFKYRFLDLRREKVRNNIILRSQIIAELRKLMIERGFLEIQTPILTASSPEGARDYLVPSRLNPGKFYALPQAPQIFKQLLMVSGFDKYFQIAPCFRDEDARADRSPGEFYQLDLEMSFVTQEDIFQIIESTLYRVFAKFSRKSVDKDFPRITYKEAMLKYGSDKPDLRNPLLISDVTEIFRDSGFNIFKSNIERGMVVRAIPAPKTAEEPRSFFDKKIEHAQKEFGAKGLGYITFDKDGTAKGPIAKFLDENRLNHIREATNIEPGDSVFFASDKENEAANIAGKVRTLLGSELSLIDDNIFKFCWIIDFPYFVYDDKSKKIDFFHNPFSMPHGGLKDLEDKNPLDILAYQYDLVCNGIELSSGAIRNNKLDIMYKAFAIAGYSRGEVDTRFGALVRAFRFGVPPHGGIAPGVDRIVMLLADEPNIREVICFPMNQQGEDVLMGAPSKVEDKHLRELSLKVIE
>NZ_LK055284.1|WP_010082661.1|426935_427367_-|hypothetical-protein
MSFGQIIIYSIALLAIVKVFLFLRKIYKNRIRKIIFPRKVFKEEWEEDRKFNELYQKNKQKELMKQQEILREKQKDVQVYKEDPEIVDIAKPVGKWTKMVMMGNGLMQRFAQLIHREGGQKGFWELFVKAQASTQGKHKGKGR
>NZ_LK055284.1|WP_007548816.1|426308_426932_-|heme-ABC-exporter-ATP-binding-protein-CcmA
MLECENLSCTRNNKVLFKNLSFKAELKSKILITGPNGSGKTSLIRSLSGLLPPVSGNIRHCGKDIYDDPKSYISSMVYIGHKNACKDSLTVAQNVEFWAGIRNTRELIVAAICCLQLQPVLNIRYGELSAGWKRRVALARLLISNANVWLIDEPFCNLDSATCELVLNLISIRSEQNGIVIITGHSSTEQLCDFTTIDIRNFNRLLV
>NZ_LK055284.1|WP_095742682.1|443419_445759_-|phenylalanine--tRNA-ligase-subunit-beta
MKFTLSWLLEYLETNAILEEITDKLTHIGLEVEDVIDNSRLTGFIVAEVLEVVPHPNADKLKLCKVDDGSKILQIVCGANNVREGMKTVLASLGSTLPESDFTIKPTKIRGVLSEGMLCSASELALVQEESEGIIELSDDYKVGDKFFNCDPVIDINVTPNRGDCLGIYGIARDLAATGIGKLKTLSIPQLTSSINSPIDVEVTDGESFISGIYIANVKNQESPKWLKDRLESIGMRSISAIVDITNYIMISFSRPMHAYDAKKIEGELTVRKANDGEKFAGLNGKEYLLNKDISVIAGDKNIHGIAGIIGGKCSECTLETTDIFLESAWFDPISITKSSRQLGISTDASYRFARSVNPEFTFDGLNLAAKMILDLCGGETSSVVSAGSLDSADTKVSFDYQDVNKFGSVSVSPDEVLDILTKLGFSIDKKTEGNWNVQVPSWRPDVTIPADLIEEVTRIYGYDKIKEEPLPNNVEEVDSTYDNLRILMTNRGFHEVLTWSFMSESTAEKFGYSNKLFIIDNPFNNSFNIMRPSIMPNLLQVTADNIAHGISDLAIFEIGPIYDGEAQSKYVLSGIRSGNNLPRNHYNTDRKVDVFDAKADCIAALEFFNVNCDNLTIEKAEKEHYHPGKSGTLSFKNKVAGYFGELHPNILDLFDIKQKVVGFEVILENIENLPVSRKKFIDYKYQSVKRDFAFIVNKDVEVGNIINVIKKSSELITEVLIFDVYHGNNIEPNKMSIALSVTFCSPIHTLTEKEIQKESSAIVNLVCENTGGTLRTYR
>NZ_LK055284.1|WP_010962582.1|445871_446135_-|hypothetical-protein
MNEIDFINTNHPLNLEQEFGNGYIESVDCFLDEDTRDYYIGLNNAIIHFFFDGNIDEDAWDYESLKFFLEIDLKGDIEKILSLRKKI
>NZ_LK055284.1|WP_022626288.1|446364_447090_+|F0F1-ATP-synthase-subunit-A
MALNPLEQFKVYTIIELPRLFGYDVSFTNSSFFTMISVILMILFLLFGIKKGSVIPGYLQAAVEYVYDFVISIIENNTGSKGLQHIPLIFTVFIFILSCNLVGVLPYSFTVTSHVIVTFALSMVVFIYITIVGFKERGVEFLRILLPKGTPSWLAPIIIIIKLFAYLVRPVSLSIRLAANMIAGHTIIKVIAGFIVNMNIFFTPAPFLFIIALIGFEVFVAILQAYIFTILTCVYLSDAVK
>NZ_LK055284.1|WP_006014985.1|447149_447377_+|F0F1-ATP-synthase-subunit-C
MDLVALKFIAIGLAVFGMLGAGLGIANIFSAMLNGIARNPESEGKMKSYVYIGAAMVEIMGLLAFVLAMLLIFAA
>NZ_LK055284.1|WP_010962584.1|447380_447860_+|ATP-synthase-F0-subunit-B
MPQLDVSTFFSQVFWFLIFFSSLFFVVSCLFLPKLDEIISTRSKEVLGSFNSSVHLLRLTEDQITKYNAALTQARIQAKKIIDDALAQVEEMRANVKNILEEEDKKKSKLIEKKVAEFKSEYTDQLKQMATSIALIYYTKLTNSEIEEEFIADLVSKEF
>NZ_LK055284.1|WP_070356812.1|447868_448345_+|hypothetical-protein
MSTSLIIGLAFLVSFVLSYKLLKKVIKNALNNKRNKSKFSSEETEKFRKDMLEYYKKSSKKYKELDAEVNKMMNEALDKANSIIKHNRQQLDQTLDDNAHSNLKKVTDQVEKALGDLQANTASIAADAVKKIMHERKDDKRSSEVISSFSRDLNKKLH
>NZ_LK055284.1|WP_095742683.1|448350_449949_+|glycosyltransferase
MPILQADNVEKIKFDSSLCKEQEKLFYYKFNIIPWQKLNDTTFFMVEDTSRDINRWVEAHYGIDYVLIKVDSEQILNLLNSHFGISEFASNYLYYKNPNFSAKSIKLSSIFFASFFIVTSILTLTEKYTYFALMLIFIIGCSSYLFKFIATVFSLCETSNQKVDYSKLNEEDFPIYTILLPAFKESAVIEQLIESIESLDYPKSKLDVKLQVESDDQETLAAIEKYTLPQYFEVIKVPHSLPRTKAKSCNYAMSFARGKYAVIYDADDKPDPLQLKKALIEFNKDDDKLACVQAKLNYYNCDYNFLTKFFSLEYMNWFQYLLPGFQKMNMPIPLGGSSNHFSVKILKEVFFWDAYSVTEDADLGLRLAQMGYKTRMIDSETLEESPIAVFAWIKQRARWIKGYMQTYIVHLKNIKSLYKHTEFKGILLLNLFVGSAAFIFFTTPFLLLSLILTKVLNELFLYYFVVVYVTNLILLVIAVKQQKMPFYFYIVSIFFPVYSLLHSVAAFLALWEFILYPERWNKTQHGLWKQNL
>NZ_LK055284.1|WP_022626285.1|449930_450959_+|heme-A-synthase
MEAKPVAIWLFLCSVMVILMVGIGGFTRLSKAGLSITEWKPITGTLPPLSEQDWLQEKLKYEATPEYKALNYGISMEEFRAIYLIEYVHRLVARLTGLVFVLPFIYFTLRRKISKKVVIKLFVALLFGALQAFAGWYMVKSGLVAKPHVSHYRLALHLLLALIIFALFSYQFFDYQIRPKQTKLKISCNTKYYVGIILVLIMIQIIFGAFVAGLNAGLIYNTFPLMDGQIVPEDLFFLQPTWLNIFENRATVQFIHRALALLILTLVVILTVKNASIKPVYIMLLSVIIQIILGVITLLLHIPIAIAIAHQVFSFILFGSSLYFLCYLRKQTTSPICTFFPS
>NZ_LK055284.1|WP_095742684.1|450907_452983_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MIEKKYSKILIANRGEIACRIIRTAHKMGISCVCIYSDADVNSVHVRQADESRYIGPSPSCLSYLNIEKICEVAVETGAEAVHPGYGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAARKAGVNVVPGYMGKISDAAHAAQVAKEVGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGSIFIEKYIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKIIEETPSPFISEEVRQKMYVQCVSLAKQVGYFSAGTVEFVVDKDQNFYFLEVNTRLQVEHPVTEFITGIDIVEEMIRTSCGEKLRFNQDDIKLTGSAIESRICAEDPSKKFFPSSGRIKYYDKPGENDYVRIDDGVAAGSEISMFYDSMIAKVITYGKDRVEAISRMQKALSECYIEGVTNNIEFLESIFHHPNFIAAKLHTRFIPDHYPSGFHGDFVTEEYIKIFIFTALYVHLENEERYHHKAVNETSQVSFQCVTLESSKKEGAPVSATRMAGDRARDLFIVNINDNEYSVNAKYQDNILITVYNHNKYSVIGKWKLSYRLLYITINDDTNIALKIERQGSKYFIRHAGMKAECCIFKPHVAELSRLMLNNETEGISADAVKSPISGLLVKLHVNVGDQVEIGQPLFVVEAMKMENIICAEAAMVIKNIPVQEGKNVQIGDVVCFLK
>NZ_LK055284.1|WP_095742685.1|453055_453811_-|aankyrin
MDGLVDIAKLLSDNEANINWRYTGPFDKTKQRVQAGNLLHLAARIQDKGKFVDICKKNIASVTAHNEYGDNPFHEAARSGILLPAVQEIVNDLEKEANNKITKAEEAGDRKEVSRLKEELKCNKKYIKDALCSKGYAFNKKRETPLYYLNAAQQKEIKQIAGIKDSFICNQKFHLCLYIIGAIACIAALCLSLYFLFLVSQSFALSSMVAIASGGVTYLSVKACSEIHALHNESTLVENANVQLAGESLGV

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Crispr_ID: NZ_LK055284_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LK055284_4

487330-487438

Orphan

Consensus_repeat	Method
TGCTGCTCAGTTAAAAGCCAAAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LK055284_4

>merge|NZ_LK055284|4|487330-487438|CRISPRCasFinder
TGCTGCTCAGTTAAAAGCCAAAGAGAATGAAATAATAGCATTAAAAGATCAAGTTCAGCAGTTGCAAGCAGCACCAAATGATACTGCTGCTCAGTTAAAAGCCAAAAAG

>NZ_LK055284|4|4|487330-487438|CRISPRCasFinder
TGCTGCTCAGTTAAAAGCCAAAGAG	AATGAAATAATAGCATTAAAAGATCAAGTTCAGCAGTTGCAAGCAGCACCAAATGATAC
TGCTGCTCAGTTAAAAGCCAAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LK055284.1\|WP_095742696.1\|490867_492139_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_LK055284.1\|WP_010082654.1\|494877_495876_+\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	unknown	unknown	gnl\|CDD\|169719
NZ_LK055284.1\|WP_010962373.1\|482134_483463_+\|IS4-like-element-ISWen1-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_LK055284.1\|WP_010082625.1\|488469_488790_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|273280
NZ_LK055284.1\|WP_010082616.1\|483700_486295_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237306
NZ_LK055284.1\|WP_010962608.1\|477149_477443_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_095742693.1\|480685_482047_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|365803
NZ_LK055284.1\|WP_010962606.1\|474869_475511_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_LK055284.1\|WP_015588967.1\|488789_490394_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_LK055284.1\|WP_010082624.1\|487809_488325_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NZ_LK055284.1\|WP_095742698.1\|498952_500347_-\|malonyl-CoA-decarboxylase	unknown	unknown	gnl\|CDD\|368376
NZ_LK055284.1\|WP_095742692.1\|475901_477101_-\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_LK055284.1\|WP_010082651.1\|497080_498877_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_LK055284.1\|WP_022626279.1\|474238_474886_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LK055284.1\|WP_010082622.1\|478482_479157_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_LK055284.1\|WP_010962617.1\|490419_490827_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_LK055284.1\|WP_095742697.1\|495851_496226_-\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_LK055284.1\|WP_095742694.1\|483445_483634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_038198831.1\|492248_492515_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_007548904.1\|477635_478433_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LK055284.1\|WP_095742696.1\|490867_492139_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.6435e-72
NZ_LK055284.1\|WP_010082654.1\|494877_495876_+\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	gnl\|CDD\|169719	PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated.	0
NZ_LK055284.1\|WP_010962373.1\|482134_483463_+\|IS4-like-element-ISWen1-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	5.99821e-11
NZ_LK055284.1\|WP_010082625.1\|488469_488790_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|273280	TIGR00810, secG, protein translocase, SecG subunit. This family of proteins forms a complex with SecY and SecE. SecA then recruits the SecYEG complex to form an active protein translocation channel. [Protein fate, Protein and peptide secretion and trafficking].	6.44845e-13
NZ_LK055284.1\|WP_010082616.1\|483700_486295_-\|valine--tRNA-ligase	gnl\|CDD\|237306	PRK13208, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_LK055284.1\|WP_095742693.1\|480685_482047_-\|AAA-family-ATPase	gnl\|CDD\|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	2.13451e-19
NZ_LK055284.1\|WP_010962606.1\|474869_475511_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.04218e-85
NZ_LK055284.1\|WP_015588967.1\|488789_490394_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_LK055284.1\|WP_010082624.1\|487809_488325_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	3.94986e-80
NZ_LK055284.1\|WP_095742698.1\|498952_500347_-\|malonyl-CoA-decarboxylase	gnl\|CDD\|368376	pfam05292, MCD, Malonyl-CoA decarboxylase C-terminal domain. This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidized. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK).	9.05693e-139
NZ_LK055284.1\|WP_095742692.1\|475901_477101_-\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	3.35554e-98
NZ_LK055284.1\|WP_010082651.1\|497080_498877_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_LK055284.1\|WP_022626279.1\|474238_474886_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.6737e-56
NZ_LK055284.1\|WP_010082622.1\|478482_479157_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	3.3693e-92
NZ_LK055284.1\|WP_010962617.1\|490419_490827_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.00876e-51
NZ_LK055284.1\|WP_095742697.1\|495851_496226_-\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	3.1548e-08

>NZ_LK055284.1|WP_010082616.1|483700_486295_-|valine--tRNA-ligase
MLKEKYGFKEVEDKCNILWEGSKVYRWNGEKDNTFTIDTPPPTISGKLHIGHIFSYCHTDFIARFQRMLGKDVFYPIGFDDNGLPTERLVEQTYKTRAKEVGREKFIEMCHEVIEKSKQEFKELFKSVGISYDWDLEYHTISKETVTLSQMSFIDLYNKGYAYRKMQPILWDPVDKTAIAQAEIEDKVFESSLNTIVFSTEENEQINIATTRPELLPACVAVFCHPEDARYTHLIGKTAVVPITETKVPIIADDKVKIDKGTGLVMCCTFGDELDIYWQQKHNLPMKIIIDQDGRMSLHSVHGQKEEIWIPVSGHWDDTIGATGMTGERATQMTKEGGCDQKEEWIPVSATRMTDDILNEINGLKVTAARKRIIEILTEKGLLVESTNISHSVKCAERSGAPLEILPTYQWFIKTLEQKAQVLDKVKECNWHPSNMRKRMEVWIEGLNWDWCISRQRYFGVPFPAWYSKRKGEEGKIILAEIKVLPIDPSKDLPKGYSKEEIIPDQDVMDTWATSSITPQLSALAVNSEFSLPNHRYDTIFPADLRSQSHEIIRTWAFYTILKAHYHANSLPWKNIMISGWCLADDKKKMSKSKGNIITPHVILETYGADVVRYWAANSRLGVDTVYSENTFKIGKRLVTKLWNASKFVSMFMEKHQVMSINSAHETMDKWILSKLYKVIERATNNLLQFEYCEALGAIEEFFWKDFCDSYLELVKKRAYGSSEATLSAKQSLAYVLNVILRLFAPFLPYITEEIYHQLYSYNSVHNQSNWPSKEELIYDKYSEEMGDNVIQILNIIRKIKADNNVSVKHLIKKLMIKADLREDKLDQSAQNDLQAVCNAETIEWMQSELETEDEKYIVNIDLY
>NZ_LK055284.1|WP_095742694.1|483445_483634_-|hypothetical-protein
MGDLYNKANAPYLIAGALATLVLLASGTLAVAPYVEFLSSVAAFNVALPVALSIRVKLRDCK
>NZ_LK055284.1|WP_010962373.1|482134_483463_+|IS4-like-element-ISWen1-family-transposase
MNKITSLSKKLKEFFNEKADKISITTRFIKRKRKLKGSSFVKAMVLGNIGVDNCSVETMCQLLNEDSIDITKQGLDFRFTEEAVEFMKRMYNESVLLFKNILQVDCKILQQFNSVKLLDSSYITLPNSMEEMYKGYGTSYSGYESNTKSGIKLQLVFDYMNQIIDQLNLTEGVRSDQGYRKHLSNILSNDLLISDLGYFVPSSFKQINEIGAYFISRYKSDTNIYDVETNQKMELLECLEDKLFLENEVLLGKEAKIRVRIICQKLTEEQSMARRRKANRLARSQGYTSSKRNQKLLNWSIFITNVPENKISAEQVLTIYRVRWQIELLFKLYKSHIRLDKLKGKPCRVLCELYAKLCAILIFHGIVGCTEVKKNTELSLTKAFIELKRRVIELFLALKNKVNSLKVFLKKLTITWSRFSLKDKYRKTRVSTLTSLNLLTIS
>NZ_LK055284.1|WP_095742693.1|480685_482047_-|AAA-family-ATPase
MVALSLSILSVLVLVLSCKMISQNKKLDAQKAEPNEKNGLAKEQENIIQSLEPQIKELNKRLSSQYNEIEKLIASAAKKEELNKLNNEVKELKVKIASVAKKEEINKLSNEVEKLIGSAATKDEMEELKAKIASAATESKTQEKIFMKFCAKGEKRGKKAFEDFIFIKEIKTKLVNIYESIKNNINIVSSAKSGDSEEEQEKIQRGFIFHGPGVTGKSSIVEAIGDQLISLTTFIKVSGADLLEKSNINDLFNKANENAPCIVLIDEIDSFGKGRTDANRVPLNYFFTRFDEADKGVTVFATTNVSLQDLDASLVRGSRLSSKLKFTMIEGSILKNILKDGLNEKLKNKKYKHAISRILNETTLTTLSISAADVECFINYIVEKLNNKIGTSAYTIIKDFCIKYNIGEVSNKQTNRKIENSIGESQQYTSRPSHKLNDALCDSGYTSMFYPDQ
>NZ_LK055284.1|WP_010082622.1|478482_479157_-|orotidine-5'-phosphate-decarboxylase
MNPIICALDTQDLNKAISLANALRGKVGMVKLGLEFFAAQGLSGVQEVAKCNVPIFLDLKLHDIPNTVAKTVEVIKVLNVEMLTLHISGGTKMLEEALSVVQGTKIKLIGVTVLTSMSNEDLNELGVAREVKSQVILLAKLAKKIGLYGIVCSALEAQEVRRECGEDFKIITPGIRIDPGHDDQKRTATPKEAINSGADYIVIGRPITKTTSSAELILKSMKEF
>NZ_LK055284.1|WP_007548904.1|477635_478433_-|hypothetical-protein
MSNINRIIREVIKEFRSKLPDKEIEEYSGKLNKLHIYQCNKHIIENKKLYHYTINGKTHAMGQHGHNFVKSLEVILRNKPQISLEEVIDFMEKIINFGIDSCYGAFEMIFESRSGVTIDDAVNFVKDSLSSKFYGFHGSGIFKVILELNPESSLEEIEKQFSKVVDPYFLNAWSRESERAFAKICRLCREGHVENMQKFDFSNFNLDQDSAGALRALLQYCVDVSNQKALGDSHELHREEMEGIYKFDDNYDLNLDSDHNDSIWH
>NZ_LK055284.1|WP_010962608.1|477149_477443_+|hypothetical-protein
MASIDVSHSCTNIAIWYIVNDVIPVLDTGIQLLCNLIKNVCFSVRQLPLAHQLSYKQNFWIPVSSTGMTSSVVQFTFKNEYPYSYVLGTEMASFFIC
>NZ_LK055284.1|WP_095742692.1|475901_477101_-|phage-major-capsid-protein
MSLTDIAHRINELASSWEQFKLINDRKLKEIESKGRADSATIEQLCKVNNAIDSCKERLDLIETAAQRPEVNTDFSTSDKYFSDCIRKGMESGLSHKTLSGDDSDIGGYLVTPHIVKRINKRVTDSSPMRQICSSQRISTETLDYIIEDFDRAGAGWSSETVDDEDGGNKSKYDFAKDTDTPKIQKISVTTYELYAQPQISQKLLDDAFVDVESWLVEKIAETFSKEESEAFIKGEGTFQPKGILAYENGNSYNKIEQVKTEKLDSDSIMMLYYSLDEYYSKNASFLMNRSTLKDIRLLKSQTGQYLWQPSLSLEAPDTLMGIPVYQSADMPPAPNNQLPVIAMADFKQAYKIVDNRGMRILRDPYTNKPYVRFFVTKRVGGEVVNTSAIKLLKVASRY
>NZ_LK055284.1|WP_010962606.1|474869_475511_+|amino-acid-ABC-transporter-ATP-binding-protein
MIKMHNVCKLFNNVPVLNNINLIIEQSIVGLAGPSGSGKSTLLRCIQKLEVLDSGSIECNDSTGFVFQDFQLFSHMTVWENLTYAPKLKNKTQDQSDSLLESLGIASKKNDYPSNLSGGQKQRVALARSLMMNPRILLCDEPTSGLDVATIVDVVELLQSVRDMGITMIIASHNLDFLTKISDRIILLKNGKIIVDINPKEIDEPTNYLKNNY
>NZ_LK055284.1|WP_022626279.1|474238_474886_+|amino-acid-ABC-transporter-permease
MQELISNFLFVGTGLAFTLKLLIGGLLLGVSLGGLLSVLRYNKICIPLINGIISVIRGTPLILQLSVVYFMTPTIAGIKLNIFSAGIIAFGLNSCAYIAEILRAGIETISKNQFEAAKTLQIPSFYMWRDIILPQVIKNILPAMINEIIALLKETALISTIGGVDIMRSAQMLAAEQFTYFIPLCLAGAYYYALVLLIEYIGKKIEQKGIYDKNA
>NZ_LK055284.1|WP_010082624.1|487809_488325_-|gamma-carbonic-anhydrase-family-protein
MYHILKYKDYEPKIDESAFIAGGSHIIGKVEIGRDASIWFNCVIRGDVGSIKIGNGTNIQDGTVIHVDRNPGGDTIIGSMVTVGHFCVLHACTVHDKAFIGMGSTVMDHAVVEPEAMVAAGSLVTHGKVIKSGEIWAGRPAKFFKKMSNEEIKHITQSAQNYIMLMKKYKN
>NZ_LK055284.1|WP_010082625.1|488469_488790_+|preprotein-translocase-subunit-SecG
MSVAVLSIFQIILVVVLVILVLLQPPGSSSLGGFSNTQQGVNSMIPVKSSENPLSRITAIVAGLFIINTLLLSGLYSKDVHKKSIAEKIILEKKQESEPTSVPFEN
>NZ_LK055284.1|WP_015588967.1|488789_490394_+|CTP-synthase
MKEAKFIFVTGGVVSSLGKGLVASSVGALLQAHGFKIRIRKLDPYLNIDPGTMNPTQHGEVFVTEDGAETDLDLGHYERFTGIKATKDDNITTGKIYHELLKKERRGDYLGKTVQVIPHVTDLIKSFIFNGTEGLDFVICEIGGTVGDIESQPFLEAIRQVNYTLGKQRVILIHLTLIPYLTAAQELKTKPTQHSVRELNSAGLQPDIILCRSEKEIFDNQREKIAKLCNVSLSNVIPAPDVSHIYELPVLYSQCGLDTQILEHFHLSKPKPSLTEWDQIVHSIRHPTQEVTVSIVGKYTEFPDAYKSLVEALNHGAISNKVKVKINWVNSREKEEKPINEKLIGEKLQNSHAILVPGGFGDDGVEGKILAINYARTNNIPFFGICLGMQLAIIEFARNVVKLEDAHSEEFRNCKHPIVKLAGDQDDDLGGTMRLGAYKCNINANSKMMDAYSNTTISERHRHRYIINSDYKDDLEKNGLLCSGISEDGTCIEAVELESHPWFIGVQFHPEFQSKPFSPHPLFVSFVKAAIDKK
>NZ_LK055284.1|WP_010962617.1|490419_490827_+|nucleoside-deaminase
MELAIEQAKLAQKNDEVPIGAVIVSGDNIISSAHNISSDPTAHAEMLAIRQAFSTPTLCDADMYVTLEPCPMCAQAISFARIKRLYFGAYNPKGGGIENGAKIFQFCSHIPEVYGGILEIECSFLLKDFFEKLRT
>NZ_LK055284.1|WP_095742696.1|490867_492139_-|MFS-transporter
MNLVQTRVLISTILCRIAIWYDYMLFIDLINIISREFCFAKDVYSNILQLFGIVGLGAIVRPLGAFIFGHVGDRYGRRIALIITILLISIPSSLIAFIPSHNQVGIISTILLLAIHITQGIALGGEQGSSVYLIEHLSSRKENLGMYFGMMGFGRSIGVLLSAVIVIICKKTTDFCTWGWRLPFIFSAILGLISAYSIYTLGETPAYEKNRKQRNLPDLPIIELIKRHKRALILAILISVPVNVAVGFTIFLRTLAKEIASVDVYVTTYINEIVLIITSVLMPISSIAFGMLADKVGKERTAILFIAITMALCCPALSIAYYYKNYLVIALSVMVLSIIERGIVPIGIVASELFPTNVRFSGVSLSRNISYALHGGFTPMVCIWLTVTFPQTNLAAGLYIVFCLLISVVAILQIKPQDKNFDL
>NZ_LK055284.1|WP_038198831.1|492248_492515_-|hypothetical-protein
MEIAPTIPPTIPTTRGDGVVRLNIISGRDIIDSIIEITPTVFRRDRNPFESKCSLIPLNNIKKMLIHIIAQSITAAIFIIAAAISAAK
>NZ_LK055284.1|WP_010082654.1|494877_495876_+|pyruvate-dehydrogenase-complex-E1-component-subunit-beta
MATLSVREALCTAIREEMQNDSDVLIMGEEVAEYDGAYKVTKGLLKEFGENRVVDTPITEHGFAGLAVGAAFAGLKPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLGCPIVFRGPNGAAARVAAQHSQCFAAWYSHIPGLKVIAPYFASDCRGLLKAAIRDPNPVIFLENEIAYGHEHEVSDSELSNKDYLLEIGKAAVIREGKDVTITAFSLKLMDALNAADLLSSKGIEAEVIDLRTLRPLDTQTVINSIQKTNRLVSVEEGWPFAGIGAELSAVVMEQGFDYLDAPVVRVTGKDIPLPYAANLEKKALPQVEDIVEAVHQVCFRKK
>NZ_LK055284.1|WP_095742697.1|495851_496226_-|TrbC/VirB2-family-protein
MNPRKVFNILFIVLFISFSHVGSAAADTNTDTTAQVICNIIGYVWGIGGPLMTVVIIGAALLAIFGRMPWPALFALGIFCAVFFGAKTIVIKVMGGIGGTGNASLMDQCGTGDTKKNYFFLKQT
>NZ_LK055284.1|WP_010082651.1|497080_498877_-|elongation-factor-4
MNNIRNFAIIAHIDHGKSTLADRLIEECNGLEAREMINQILDSMDIERERGITIKAQTVKLNYTANDGNQYCLNLMDTPGHVDFSYEVSRSLAACEGSLLVVDSSQGVEAQTLANVYKAIDNNHEIIVVLNKVDLPAADPEKVKLQVEEVIGIDASESVLISAKTGLGIKDVLEAIVAKLPAPQGDVNAPLQAILVDSWYDTYLGVVILVRVKNGVLKKGMRIVMMSNNATYQIDNIGIFTPKKVMTGELSAGEVGFITASMKEVADCKVGDTITEEKRPCSEALPGFKEVHPVVFCSIFPHKTDDFKYLREALEKLHLNDASFTFEAETSNALGYGFRCGFLGMLHLEVIQERLEREFDLDLTATAPSVIYRVTTRSGEVLNIHNPSDMPDPTKIEIVEEPWITATIMVPDQYLGDILSLCEERRGEQEDLSYIGNTTTALLRYKLPLSEVVFDFYDRLKSISKGYASLDWEISSYLVSQIDKLSFLINGEPVDALACIVHKSRAEKRGREICARLKDLIPRQQYKIAIQAAVGGKIIARETINPYRKDVTAKLYGGDVTRRMKLLEKQKKGKKRLHSIGNVNIPQNAFIQALKISD
>NZ_LK055284.1|WP_095742698.1|498952_500347_-|malonyl-CoA-decarboxylase
MTKESLVKTDIVKVEDKKPVRSFFKILGGVADAVRSWIGNISPDLSNSRDIDSLVLKMNECLNPKGGEVSARKNAVSLGNLYLSLSEKGKIKFLQTLAEKFNPNKAEIDEKIREYKKNQDPELNYKFEQDLIKILESPRSKILKQFISLPEGLKFIVDMRSDVLKLKNQYRSLNPLESELKNILYTWVDVDLLDLRQITWDSPASLLEKLIKYEAVHKISSWDDLKNRLGLCFAFFHYKIPNEPLIFVEVALVDKIADSIQHLLDESVPSNDPSNASTAIFYSISNTQAGLSGISLGNFLIKRVVEKLSQEFKSIKTYATLSPIPGFTKWLKNNLNQDVTLLGKLNIKQSSAEILESAEQLKINVECINETKQCMLKLCAYYLLKVNNSNGNAYDPVAHFHLSNGASIKQLNWMADTSEKGISQSAGMMVNYLYELPKIDNNHENYMVNKVISCSKKVSSMLKE

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Crispr_ID: NZ_LK055284_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LK055284_5

538814-538924

Orphan

Consensus_repeat	Method
GAGATACCGCGGCGGTATGACGGTTCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LK055284_5

>merge|NZ_LK055284|5|538814-538924|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGGTGGTATGACGGTTAAGTAATTCGTCATCCCGCTACTTGTTAGCGGGATCTAGAGATACCGCGGCGGTATGACGGTTCGCGG

>NZ_LK055284|5|5|538814-538924|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGG	TGGTATGACGGTTAAGTAATTCGTCATCCCGCTACTTGTTAGCGGGATCTA
GAGATACCGCGGCGGTATGACGGTTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LK055284.1\|WP_080717616.1\|532848_532935_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NZ_LK055284.1\|WP_010962658.1\|533011_533569_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_LK055284.1\|WP_006279326.1\|531216_531408_+\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|370944
NZ_LK055284.1\|WP_010082015.1\|539869_541417_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_LK055284.1\|WP_010081840.1\|536425_536797_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_LK055284.1\|WP_022626262.1\|533576_534320_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
NZ_LK055284.1\|WP_010082212.1\|531424_532051_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_LK055284.1\|WP_010082163.1\|542612_543500_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NZ_LK055284.1\|WP_095742707.1\|551180_553841_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_LK055284.1\|WP_095742704.1\|541413_542211_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|273806
NZ_LK055284.1\|WP_010962666.1\|543490_544369_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_LK055284.1\|WP_010082016.1\|539005_539449_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372314
NZ_LK055284.1\|WP_010962662.1\|536877_538698_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_LK055284.1\|WP_070356839.1\|534330_535191_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_LK055284.1\|WP_095742703.1\|532040_532736_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|376506
NZ_LK055284.1\|WP_010962667.1\|545324_546497_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_LK055284.1\|WP_095742705.1\|546535_549115_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NZ_LK055284.1\|WP_095742620.1\|549115_549948_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_LK055284.1\|WP_095742706.1\|549968_550931_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010962661.1\|535171_536020_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396

Protein	Function_ID	Function_description	E-value
NZ_LK055284.1\|WP_080717616.1\|532848_532935_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	0.000122762
NZ_LK055284.1\|WP_010962658.1\|533011_533569_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	8.86584e-86
NZ_LK055284.1\|WP_006279326.1\|531216_531408_+\|zinc-finger-domain-containing-protein	gnl\|CDD\|370944	pfam10276, zf-CHCC, Zinc-finger domain. This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.	2.05346e-07
NZ_LK055284.1\|WP_010082015.1\|539869_541417_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	6.19767e-142
NZ_LK055284.1\|WP_010081840.1\|536425_536797_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	1.75586e-34
NZ_LK055284.1\|WP_022626262.1\|533576_534320_-\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	1.56287e-135
NZ_LK055284.1\|WP_010082212.1\|531424_532051_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.80971e-39
NZ_LK055284.1\|WP_010082163.1\|542612_543500_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	1.1729e-140
NZ_LK055284.1\|WP_095742704.1\|541413_542211_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	5.02554e-25
NZ_LK055284.1\|WP_010962666.1\|543490_544369_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	2.89009e-146
NZ_LK055284.1\|WP_010082016.1\|539005_539449_+\|hypothetical-protein	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	9.78869e-15
NZ_LK055284.1\|WP_010962662.1\|536877_538698_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_LK055284.1\|WP_070356839.1\|534330_535191_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	2.03085e-117
NZ_LK055284.1\|WP_095742703.1\|532040_532736_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	2.41921e-111
NZ_LK055284.1\|WP_010962667.1\|545324_546497_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_LK055284.1\|WP_095742705.1\|546535_549115_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	7.5067e-14
NZ_LK055284.1\|WP_095742620.1\|549115_549948_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.95669e-26
NZ_LK055284.1\|WP_095742707.1\|551180_553841_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_LK055284.1\|WP_010962661.1\|535171_536020_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	4.71062e-140

>NZ_LK055284.1|WP_010962662.1|536877_538698_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIFGVVSSGDSVIPTLLTGLQKLEYRGYDSSGIAIINNEGKIEVKKSEGKVERLCEVVDDSKMSHSTVGIAHTRWATHGVPGLKNAHPIRTNNVVVAHNGIIENYNLLKKGLEERGMSFHTDTDTEIIPNMLTLYLDEGLSPIDSLFKCLNNLHGSFALVLLFAEYPDALFVAKRNLPLAIGYNCNTVFAASDSNALSAFVERISHLEDDDIAVIKSSGVSIYNNGTQVKRSIENSSPSDFLISKNGYPSFMLKEIFEQPRALNKTINQFYKQYKEVIFANKKLFSELSYITIVGCGSSYFAGLIAKYWLENVAQVRVYLEISSEFRYSNVKLEEGSIGLFISQSGETADTIEALRYAKSQKQTIISITNTFSSSIEKISDIVLHTLAGPEIGVASTKTFSAQLATLACFAVELGKIKGVLGGERIKQLSNAINSIPEYVEHVLNVMKIQHISDSILEHNNVILIGRGSSYGVAMEGALKIKELSYINTTGIAAGEMKHGSIALIDSTVLVIAIIPYDDLFFKTLSNIQEIIARKGKVIAFSDKQGAPFLRGVCADVVQLPDTDNFISPIIYSVAMQFLAYFTAAKKGLDADCPRNLAKSVTVE
>NZ_LK055284.1|WP_010081840.1|536425_536797_+|preprotein-translocase-subunit-YajC
MLISEVFAADATSNTSSIGASFASFIPLILIFVVFYFLIIRPQQKKLKEHRKMIDQIKRGDTVITSGGIIGEVNKVDEANAQFIIEIAPKVEIKVLKSAISEVLSKETQKVAAKPIKKVKSKE
>NZ_LK055284.1|WP_010962661.1|535171_536020_-|30S-ribosomal-protein-S2
MTNLPKVTVRDLAESGVHFGHKISRWNAKMAPYIYGVHQENRIHIIDLRKTLPLLQVAMKALYDVAFQGGRILFVGTKFQAFDIIASEAIRCGQYYVNHRWLGGMLTNWGTVSSSIKTLMQYEKILNDEDSILTKKELGNIEKKKQKLDKALGGIREMGAIPDILFIIDTNKEHIAVKEAKKLGIPIVAILDTNSDPDGITYLIPGNDDSRKSIELYCKLATDSILAGIESSLAKSGVKIDDIRGDEFIQEKEDGIVQTKRRRSKVYKEEEREVVTNEDESR
>NZ_LK055284.1|WP_070356839.1|534330_535191_-|elongation-factor-Ts
MKMNPDDIRELRDRTGLGLSDCKKALEECDGDIKKAVDKLRTIGLAKADKKSDRVASDGLVAMCLTENCGVLIELNCETDFVARNEKFIELVLNLASIAHQERCTSVDELKNAKYESIGTVQEAIMNGTSVLGEKLELSKLCYLEAKDGVIAGYVHGDVCGLGKIGALIALQSSGDKAKLQEIGKQIAMHVVAMKPEALSIDDLDQMKLNNERSIIEEQVRSLNKPEEVAKKIVDGRMAKYYEEVVLLEQKFIKDDKMKISDFIKSSELSAVKLSNYKLLVLGDAD
>NZ_LK055284.1|WP_022626262.1|533576_534320_-|UMP-kinase
MFISTNEKSEIKYSRVLFKISGEALMGSKQFGHDMETIGELSKGIVEVCNLGVQVCIVVGGGNIFRGTSASLSGCERASSDYIGMLATIINALILQNFLEKNLVASRVLSAIPMATVCEPYIRRKAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAVEMNCDVILKGTQVNGVYSADPKKNEDAVMYDRLSYTDLLTRDLKVMDASAISLARENSIPIIVFSLKGEKIVNIIKGQGTYTIVSDCKQ
>NZ_LK055284.1|WP_010962658.1|533011_533569_-|ribosome-recycling-factor
MLNEIKAKTKERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVIDNKTLSIKVWDISVVGEVKNAILNANLNLNPVVEGSTIRIALPDLTQETREKLVKLLHQFAENARIAIRNIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDDNIKKIDGELSIKEKDILNH
>NZ_LK055284.1|WP_080717616.1|532848_532935_+|hypothetical-protein
MILECKIGVIPVLRHWDPGNLISNKCIR
>NZ_LK055284.1|WP_095742703.1|532040_532736_-|di-trans,poly-cis-decaprenylcistransferase
MLNQESLPKHLAIIMDGNGRWANNQGRVKIDGYKKGSEVAYDIAKYCTDLTIPYLTLYAFSMENWLRPKNETDCLFDLFYSVLTNEDKVNFIYNCNIKLNFIGNLSLLPSKILDQIKKAEEMTHKNDGLLLTVAVSYGAKQEITQAISNIIKENIAYVSEEKFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKKYGR
>NZ_LK055284.1|WP_010082212.1|531424_532051_-|phosphatidate-cytidylyltransferase
MVDNNFIIRMLSSIVILFIFSFATYFSDLSFYLLIFSIAVLSSFEWYNLTQGNKILYVFALLLIALPSASLIYLYNLPQGKYALVWFVLTIWGIDVTAYLFGKNFGGAKICPIISPGKTWAGLLGAILAGVVCTIFGSIFFGLFSIFYSPIIGLAIAILAQLGDFTESLVKRAYGVKDSGNMIPGHGGVLDRMDSFIFTAPLIAIYIS
>NZ_LK055284.1|WP_006279326.1|531216_531408_+|zinc-finger-domain-containing-protein
MSKVRVNNRKVCCHGDENDEGSGHPLIYLDMGEEEEIACPYCEKTFVHDCTVEAVGELTRDEL
>NZ_LK055284.1|WP_010082016.1|539005_539449_+|hypothetical-protein
MALSKFLDPKLDLTFKKIFGTEKNKNILIHFLNDILGFTEINAIQEVEFLSTIMDPEVASDKQSIVDVLCKDSHGNRYIAEMVRPESLRSYCLKGEEFIQKETERILKLIEPDVLPSESTHQCELGNQLVPSDADNEPPLDKEDAQS
>NZ_LK055284.1|WP_010082015.1|539869_541417_+|group-II-intron-reverse-transcriptase/maturase
MITSTTVSVPTNNSEAWNQLPWKKCQKVVMRLQRRIVKAVQQGRWGKVKTLQHLLTRSFSGKALAFKRVTENQGKNTAGVDRQIWSTCNTKFQGIKLLKQRGYKPSPLKRIYISKSNGKRRPLGIPTIKDRAMQALYLFALEPIAETISDRHSYGFRPKRSCADATVACHLLLASRNQLQWILEGDIKGCFDNINHEWLMKHIPMEKKILHSWLKAGFLESKTLYSTTAGTPQGSIISPILANLALNGLEKSLESQFGKLGSKRRSKIRSGVNVIRYADDFIISGITREVLENEVKPLVSSFLQERGLILSEEKTKITSITTGFDFLGCNVRRYNKKLIIKPSKESIKKLLNKARTLIKANIANTQAVLIKLLNSLLRGWGNYYSHVCAKRAFNKIDHEIMCALWKWAKKRHPRKGLRWIKNRYFKVMKQRQWVFAAPICKNKPKEIRYLRLLRLIDIPIRRHVKIRADANPLDLKWKKYFDERVKQTKMLASSFSREGSLLLVSPLRMMFSEES
>NZ_LK055284.1|WP_095742704.1|541413_542211_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKDKPVREKKDLDKGLKRSVGKPACCVSKGGSSSNTTSLPNQLARDKGFEKRAQLYAAKAYSRQADKSGKYVDLKKIFFIAISNCTLFPDKLDYISSHTIRDEKTNEHDLKDFQFIFIELPKFPKSREEQLESVVDRWLFFFKYADETTDEDLRKIAEKSPIIKLAYDELDKFHWNEKDLITYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGY
>NZ_LK055284.1|WP_010082163.1|542612_543500_-|UDP-N-acetylmuramate-dehydrogenase
MLISLPKVRGIYRYDVLMSKATWLNVGGRADVLFKPCDIEDLTYLIKNTELPVSVIGATSNIIVRDSGIRGITVKLGKEFAYIKSKGNNSIVAGGAVLLSNLAHFAGNQQISGLEFLVGIPGTVGGGIEMNAGAYGSDIASVVQSIKAVNLEDGNLYEFSSEEMGYFYRGHSLKGNWIFVEAEFKGVNSEYELILQRLKEVIERKNKSQPIRGKTAGCIFKNPKNYRAWELIDKSGCLRLNIGGARISKKHCNFLLNYDNATASDLENLGNKVKDAVKDKFNVELEWEIRVLGSY
>NZ_LK055284.1|WP_010962666.1|543490_544369_-|hydroxymethylbilane-synthase
MLVKIGTRGSKLAVAQALEAKQKLLDSFPNLSIEIVKIKTSGDKYANANLAEIGGKGLFIKEIETELLENNIDMAVHSLKDMPAFFSGGLTIPCVLERLSSCDAFISHKHNSLESLPQQATIATSSIRRKVQLLNVRPDLNIVPLRGNVTTRLQNQSFDGIILAEAGLIRLEKHHLITEVLPPKVMLSAVGQGAVCIQCRRNDVKIIDLLEKINNNMSFIGVKSERSFMKTVNGSCFTPLAALAEYVSENMLHLRCMLASGKNIYFTERTSFIEDAEKMGMDAGLELKSKCL
>NZ_LK055284.1|WP_010962667.1|545324_546497_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSKIIEIRAPKTLGGESVTEGIVKIKKGIGEAVKVDDLIFEIETDKTALELTAEASGQITEFLIKEDDVISPDQLLAKLSMGEVKEEARKEDKSESAAKKDAPSARKIMEENAISAESVKGTGMGGRITKADVIGHMNKAEQPAIKQYELPKSVVNGEQREERVKMSKIRQVIAARLKASQNTAAILTTFNEIDMKNVMDLRAKYKDAFEKKYGIKLGFMSFFIKAAVQALKEIAEINAEISGDEIIYKHYYDVGVAVGTDKGLVVPVIRGADQMSFAEIELTLVALGKKAREGKLQVSEMEGATFTISNGGVYGSLLSTPIINPPQSGILGMHSIQNRPVAVGNAVEIRPMMYIALSYDHRIVDGKGAVTFLVKIKNYIEDPNRLVLEV
>NZ_LK055284.1|WP_095742705.1|546535_549115_-|tetratricopeptide-repeat-protein
MYLFPDNLLGGFRFEVRNPVGSFTGGTEELRELHKLIQKSQGVATVISQLVSISGLGGIGKTELAKKYIEEHSKDYDNNIIWIKAETHETMVQSFLRLARDPLGIPTEDRDIESIVRDIYAFFAKRKSLFVFDNAEEYRSEGQDAGISQFLPSHFLSSDDNKPSVLITSRNQKWGDIKSLTLGAFTEPESIDFIRKALGIKDGSQENEIKNLAETLQHFPLALQQAVAYIKERDIALKNVGLKFEISDYLKRYKEEAEKLLDFKFPKDSDNSYTKTTFITWRITIDKIKDNPEYGQQAKEILDIIAYIAPDNIPAKMFLGVERNEEKLGDAIQLLKQYSMINSGEEQSSVNIHRLVQQVTRIELEKQGKNKVVKKTFELLEESFPYGSDKLEDYAKKRQLLPHLEAFLSHVDNWLTKNPSEKQTIEKDYLVNLLIWIGDGYFDLDPRRQKKSLERVLPIIKKHYGSDHFQAAITLANLGIAYGALGDPQKEKELLERALPILKTHYSPDHFEVAKLLANLGNAYGYLGNYKKQKELLERALAIQEKHCGSDHSEVARTLANLGNVYGALGDPQKQKALLVRALLTFEKHYGTGHPEVARTLISLGTAYRALGDPQEEKELLERALPIFKEYYGYDHFEVAKLLANLGIACGALGDPQKEKELLEQALTIKEKYYNSDHFEVAITLTNLGISHVDLGDYKKQKELLERALAIKKKHYRPDHFEVARTLANLGNSYRVLGNPQKAKELLEQALAIRKKHYGLDHFEVVKLLATLGIVYGTFGDHQKAKELFERALPIFEKHYGSGHVQVAKLLANLGIAYGALGDHKKQEELLEQALPIFEKHYGPDHPEVAKLLAELDDI
>NZ_LK055284.1|WP_095742620.1|549115_549948_-|IS5-family-transposase
MRKKYPTDLSEREWARIEKHFRVSYKKGGRLPKYSKKEILEAIFYVLRTGCQWRYLPNDFPLSKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKIALNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKEYDLLTTSTENFIYLAMSRVMLKREYA
>NZ_LK055284.1|WP_095742706.1|549968_550931_-|hypothetical-protein
MHGNIYQLKVLMLFLHRGVLYQHSFRLGTEIEEARKFDDLVFECTQGSKKVYRFLQAKHTQDEDNKKIGVGNLLTKDKSGEFGLAKYFVSYLKIKNNQDFADGNLKDFIICTNIDFDLDQSTARNTVKKLRVKTLGPNEEIEILVEVIDTSDVFFKDGGTRYKFSYIHNNMISVVQPAFESAVEEAMEELEEEIKKLQNKPDQNSKRKLERNQTWQREFGRMMNEGRLEDNIKEFFDKLVFAVNQPNEIKLADIIKSELGEQFNDIDRQNVYARFQEKMLDWLKEKGRRFLTHEDGREFFRKMKEEILEVVRKQVKGYNI
>NZ_LK055284.1|WP_095742707.1|551180_553841_+|preprotein-translocase-subunit-SecA
MLDSPLILTAILIFFIFTLSFFFIRKIFGSTNKKIIKSFRKIVQQINALETEMQSLSDEELAGKTEEFKQELKNGKTLNDLLVPAFAVVREASRRFLNMRHFDVQLIGGMVLHNGMISEMKTGEGKTLVATLAAYLNSLEGKGVHVVTVNDYLAKRDTEWMSKLYNSLGVFVAFITNNLTDEERKEAYSADIVYSTNNELAFDYLRDNMKFSQEDMVQRGFHYGIVDEVDSILIDEARTPLIISGPVEENNQIYKHINKIVTKLVDSDYEVDEKGRTVFLTEDGISRVEELLRSYNLIPENSSLYDTDSMIMTHYIDQALRAYKLFTADKDYIVKDGKVVIIDEFTGRMMEGRRYSDGLHQALEAKENLEIQHENQTLASVTFQNYFRMYNKLSGMTGTAATEAEEFRDIYRLNVVKIPTNVPVKRVDIDDEIYGTEKEKFNAVLKFIEECYKRLQPVLVGTVSIENSEKLSALLQSHSLKHSVLNARYHEQEAYIIAQAGVPGSITIATNMAGRGTDIQLGGNAEMIAKVELKKIKNADEREKKYQEIVERVKKDKEIAIKAGGLCVVGTERHESRRIDDQLRGRSGRQGDPGLSKFFLSLEDDLMRIFGSDRMRSFLQKVGLKNNEAIHHPWINKALEKAQKKVEARNYDVRKSLLKFDDVINNQRKVIFKQRNNILGNEINDLLEVYSEVNESVVEGIIQSGYYEDYIENIVKEFHTRYGITLDKEDLAKFLNKQEALNYINDKIQEFFTEKEKYFNSQHTTDLWNTIVKQMMIMTLDHLWREHLSVLESLRQSISLRAMGQKDPLNEFKREAFLMFESMLEKWKELTIHRLAHFKLADNQEIGNRLHSARNSRLPKVSRNDKCPCNSGKKYKHCHGAVTVVS

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Crispr_ID: NZ_LK055284_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LK055284_6

607271-607414

Orphan

Consensus_repeat	Method
TAATAAAAGGAAAAGCAGAGATTAATGCAAAAGATAATCAGGGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LK055284_6

>merge|NZ_LK055284|6|607271-607414|CRISPRCasFinder
TAATAAAAGGAAAAGCAGAGATTAATGCAAAAGATAATCAGGGAATGGCTCCTTTACATTGGGCTGTTAAAGTTGGTCATATAAATGTAGTAAATGGTCTAATAAAAGGAAAAGCAGAGATTAATGCAAAAGATAATCAGGGAA

>NZ_LK055284|6|6|607271-607414|CRISPRCasFinder
TAATAAAAGGAAAAGCAGAGATTAATGCAAAAGATAATCAGGGAA	TGGCTCCTTTACATTGGGCTGTTAAAGTTGGTCATATAAATGTAGTAAATGGTC
TAATAAAAGGAAAAGCAGAGATTAATGCAAAAGATAATCAGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LK055284.1\|WP_010962484.1\|615997_616600_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LK055284.1\|WP_095742718.1\|591416_591860_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372314
NZ_LK055284.1\|WP_010082015.1\|592280_593828_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_LK055284.1\|WP_095742725.1\|608723_610841_+\|ankryin	unknown	unknown	gnl\|CDD\|293786
NZ_LK055284.1\|WP_095742862.1\|586055_586973_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_LK055284.1\|WP_095742720.1\|594628_596245_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LK055284.1\|WP_095742723.1\|604580_605468_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LK055284.1\|WP_095742722.1\|597058_604543_-\|latrotoxin-related-protein	unknown	unknown	gnl\|CDD\|222980
NZ_LK055284.1\|WP_095742864.1\|615145_615736_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LK055284.1\|WP_010082109.1\|619075_619330_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|269821
NZ_LK055284.1\|WP_095742717.1\|587096_588386_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|372319
NZ_LK055284.1\|WP_070356780.1\|611777_612992_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_095742863.1\|588470_591236_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NZ_LK055284.1\|WP_015588922.1\|618743_619079_-\|baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|134016
NZ_LK055284.1\|WP_010962482.1\|617931_618741_-\|baseplate-assembly-protein-J	unknown	unknown	gnl\|CDD\|164963
NZ_LK055284.1\|WP_015588926.1\|614684_615113_-\|DUF2924-domain-containing-protein	unknown	unknown	gnl\|CDD\|371394
NZ_LK055284.1\|WP_095742719.1\|593824_594637_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|273806
NZ_LK055284.1\|WP_095742726.1\|619332_619797_-\|phage-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|368076
NZ_LK055284.1\|WP_010082149.1\|610789_611617_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LK055284.1\|WP_095742721.1\|596195_596990_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980

Protein	Function_ID	Function_description	E-value
NZ_LK055284.1\|WP_010962484.1\|615997_616600_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	8.14307e-26
NZ_LK055284.1\|WP_095742718.1\|591416_591860_+\|hypothetical-protein	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	8.85647e-22
NZ_LK055284.1\|WP_010082015.1\|592280_593828_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	6.19767e-142
NZ_LK055284.1\|WP_095742725.1\|608723_610841_+\|ankryin	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.83182e-13
NZ_LK055284.1\|WP_095742862.1\|586055_586973_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	4.21501e-167
NZ_LK055284.1\|WP_095742720.1\|594628_596245_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.96453e-25
NZ_LK055284.1\|WP_095742723.1\|604580_605468_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	7.51247e-21
NZ_LK055284.1\|WP_095742722.1\|597058_604543_-\|latrotoxin-related-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	1.36991e-37
NZ_LK055284.1\|WP_095742864.1\|615145_615736_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	6.65009e-22
NZ_LK055284.1\|WP_010082109.1\|619075_619330_-\|hypothetical-protein	gnl\|CDD\|269821	cd14671, PAAR_like, proline-alanine-alanine-arginine (PAAR) repeat superfamily. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat superfamily, where it forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). The T6SS is responsible for translocation of a wide variety of toxic effector molecules, allowing predatory cells to kill prokaryotic as well as eukaryotic prey cells. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. The PAAR-repeat proteins form a diverse superfamily with several subgroups extended both N- and C-terminally by domains with various predicted functions; the termini are exposed to solution, and do not distort the VgrG binding site. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes. It has been shown that PAAR proteins are essential for T6SS-mediated secretion and target cell killing by Vibrio cholerae (encodes two PAAR proteins) and Acinetobacter baylyi (encodes three PAAR proteins); inactivation of all these PAAR genes results in inactivation of Hcp secretion as well as T6SS-dependent killing of E. coli.	2.50422e-17
NZ_LK055284.1\|WP_095742717.1\|587096_588386_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|372319	pfam12796, Ank_2, Ankyrin repeats (3 copies).	4.18579e-05
NZ_LK055284.1\|WP_095742726.1\|619332_619797_-\|phage-baseplate-assembly-protein-V	gnl\|CDD\|368076	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector. Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft.	2.30708e-49
NZ_LK055284.1\|WP_095742863.1\|588470_591236_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NZ_LK055284.1\|WP_015588922.1\|618743_619079_-\|baseplate-assembly-protein	gnl\|CDD\|134016	PHA02516, W, baseplate wedge subunit; Provisional.	1.81247e-37
NZ_LK055284.1\|WP_010962482.1\|617931_618741_-\|baseplate-assembly-protein-J	gnl\|CDD\|164963	PHA02568, J, baseplate assembly protein; Provisional.	2.31031e-62
NZ_LK055284.1\|WP_015588926.1\|614684_615113_-\|DUF2924-domain-containing-protein	gnl\|CDD\|371394	pfam11149, DUF2924, Protein of unknown function (DUF2924). This bacterial family of proteins has no known function.	1.44986e-34
NZ_LK055284.1\|WP_095742719.1\|593824_594637_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	7.1219e-23
NZ_LK055284.1\|WP_010082149.1\|610789_611617_+\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.28102e-27
NZ_LK055284.1\|WP_095742721.1\|596195_596990_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	5.0906e-33

>NZ_LK055284.1|WP_095742723.1|604580_605468_-|ankyrin-repeat-domain-containing-protein
MDSDKKVRYVQYLVNSAAIGDIDSVKSFIEDDDIDVNSIDDDGYTALYQAAGGGHYSIVEYLLSKGANVNFKIESDDPALCGSTPLCYAAMNGHVDVAKTLIQHGASTDVVVNGYNLLRTAAMSDNPSMIEFALGFGASIDDCSPNGRTPLIFAVGENNYESVAFLLEKGADYKKFTDKGMSALTLSVLGQGPESYRVTELLLKHVEAKEGKDGLVEYMNSVDPIEGRTALHSACFMNNYHAVKLLLEKGADYKKKDKKGSRPSALVFGDSHLCRQIRWLFGPYAEADLARSHER
>NZ_LK055284.1|WP_095742722.1|597058_604543_-|latrotoxin-related-protein
MVFKCSEVDKSVQRETARKSGLALLELLVKFHLDCLEEIRNNGRDKFPKAQEEILFGKIKAGIKDLKGDLVRSDVKDLKLLGISILDYQPGGDVGLNQFLVKAISSLFRSISEEVLKSEASRDDPNLATRWTIRLKDYDSKLVDLDSTIESKISKYLELRRDIKSLDEVCSAIESSKKVLEKGSIKEKRLALQTMFQVVGEYLKSSKNTLNLSPHVVKLLKKKGLPIESFSNFRDMLLHYQMFSLIDLDGRKIKKLFEEALLPIEGAIKDTMSEIEKGFIEDIVKESVSEIKDNIIRVGINSAVDQGVARVIKYIEQIKDKGQMDDRSKEIVDEIYQNALKMKSKEFSVVGRKRTKEKVQEEILKAQKLVIEFIEKNKLKPYDELRDKLFSKVTENHKSAVDLDGAHSDALRIAKIMDYLRYGGDSLPDDVTKDFLKMKVLEKMNLSKDVPLKGELEKYFDAKIFETNDVPYSKFKGDTEDKLIGLLKKGKSNDSIKKLIDFFELRKNLGSKAAGIFPDEYKRLVDGSGVSGIDAEKLLSYSVDWRKGEIEELLKRSSPALKKIYDDLLTGRITEDWVYKNLAYHYRSKGKSGDDIKRAADFLVGSVKKQVETGVEGFFLNKVKEQCGELKELTNPGAIKAQIINLYSSLERVEAALKKGEKGQLDIKLKKLRNYLAHDDVLLSSGERILLEGEIIGLKDSFTSKLGDSAITVENIKDAINSLKLGNSASQITKLLCPSRGGPARARRSASESCLTWEEIDKLSEVEAKDRNPENIMIDSEKLVPAILDEFKMNAKGEKIANLLTLANEGEIVGKYRAEIDLLFGKSGYLNHLNKVGKVSGMVMHGMIAKNIVGDLLRGDYQDVVINLGFIAGNQGLAKALEALSMKGAAYTMEGRVLLGGSMRFAAPVLSRVTSAFIAYDLYNQIKEYQKGNKDALVPIIGDSIQLGVDTAVLGVEIGEGLGIVALEGASAAAGPIGMAIAAVVFVGTEVYAAVRAVEKIDEEIHLTGWERLGQGLLNFFGQRPSEYIEKLMGEKEANNKAVENAISFLKSNSHIRRYVFPGREPVTYVPDHVIYERDVSRLYDKQYSEEALNSIVLLDQKRNDIKWARARPDNFGGVNLFCLPKGEWESVPKGGTYYCENAIGVEYDNNRTGDLTLINLGGGKDRAVGFQDSGNLFILNERHKEIFGGNKNDNFIFEKENVEISYDIAISGSIDGRGGVDTIDVGQLPLNYTYIREGRYQVFADFREGILTDKFKVILNISNINQFLGRKGGVDLVSSACDTAYIDGRGGENRHYADNIVIPRNDTCFYDTKVMVSPYTHVTSNAIRGNFTYVVQGEKGKEAYVDLGQSSQSNNKFIFNYTLQDLAIIDRSNENITFSFKEKEGVDADGSFNLTINGNYKNITTYQLTDNARIVVSQSNIYAMQDTKRPIGDLVKGYYSMAGKSQMYVIVHSNNEVLTIGNTNSDVLSNDPSARASHLVGGSGENVYVVISGHEKLALENLPISDVIIYDFDEENKIDTLDLRKINEQAKKDLNKAIDTEIKRVGSDLLVSLFVDNKSKKEVLKVRLKGALENDWYKRVHAVMDSIYLIEKVQDGFKLTPQPLVLNDRSKTIYVINPDDVARGNKIEVNREIGEYVFARENDALLITNSLASHAYENNFFTLMLNDFYHENNNGKMHTLKVEFLDKVISLSERREEIKSSLSFSELMDRVRVNTHKALTSAVMKQRMFDAIERNDVDKVRELIDHGANVNSQGYEDRAPVCYAVEVGNLDMVRLLIDNGADVNARDDENKTSLHWAAHKGYLDMVKYLISKEADIGAKANGGRTPLHYAAQEGKLDVVKYLVWEKHADINARDSGGQTPLDYATNSKNNNVVEYLKQAQLDLNNELSNAVVENNIDKVKESIRRGADVNTKVKNGRTPLHYAAQEGKLDVVKYLVEEKHADVNANDNDGFIPLHYAAAHGNLRLVKYMVEKGADFNAKCNRLRTPLHLAAMYGYIEVVKYLKERGAAFNLKGHYGQSPLHSATINGKLEVVKYLVKEGASIDDKDQVGRTPLDYATKKGYKNIVEFLKQKQSRLDLSSEFQNAINEGNLDVAESLVDEGADVNVANGSGQTILHFAAGSDDLELVKRLLDKGASVNSTDAVMESPLHYAVAEGGNLEIVKLLVDKGANVNAKNIFSRTPLHLATIVNRLNLVQHLVERGADFNLSDRYGDTPLSFATKQEYSDTVKYLEMAMREKGAVRRRRHHHGYHNLHHSHLSRKLLAEGSSKSREAVAGSSIRPSSWINNFFSWVNRGTGKVKGFIGGWITDNNADLKPENGEKALKMDMSAIDASGAILLLDTLIRRANGQKHTSNDESGISEQEAYGYAVNITEGFEKIIEETAQSSKISMSQFNIDFPKVQGEVTKKIISGKYSEISGVLNSYAQKACHESDVECDSMEEVNKFMTAFNRELNILLDRLMPQVLNNKSNIQESLGPKSYLDNVFVSGHADQFRGL
>NZ_LK055284.1|WP_095742721.1|596195_596990_-|ankyrin-repeat-domain-containing-protein
MMKLEKIIGEIGRGPNLNRESVIDEVKVALRERDSSEYDKWQEDEFNVNHVFYGKTALLHSASECCKEKMVEALIENGANVNAVDDCGETPLYHGIRYRDWEVIETLIKNKASVNVSDRYGRTPLHKAVQGISSDYEPLETLIVKTLIENGANVNAPDNCEETPLHEAAGSSQVGIVRVLIESGADVNAFSYDKSAPLHKAAWYGTANMVRVLIENGANVNAVDFIGETPLYTAAEKDDRDKVQVLIESGGCQYRWSSWKRSAT
>NZ_LK055284.1|WP_095742720.1|594628_596245_-|ankyrin-repeat-domain-containing-protein
MVDVNIDGHRGNAPLHEAARCGAADVVRMLVESGANINLVNYDKKTPLHLAAKHNHLEVVKYLVDNGADFSAGKDKMPLDYAREGGHKEIVEYLEGKMAEVSQSQHESSQTSKKVCGESLDPEVVFGIDSMAMREKSGVKKGESQKEKSRCLIQSFQEQQDLHLLGFLPPYLQIESVKQGLYLPSFKARNIKVDGKCVSITRGLSQTLFLQCKKSFLSNLKTSAEIYERTAQGKQVSKREEREVFAFSKLLDSFEQQLDSAMNSLPSSLIHAQGYKMLRELSNYIAGMKGDFAIHLVTDNHVIAIYRIGNSYAYFDCNVAFISGLKSVDQLIEVVEKGASYEVEEGLLVEYFDVDKANSLLSGEDKQILAKEIKTECQLLAEQDKELGLIKINGQEISRVQLYNFGTKINVEGGLPLLISADMNLTSKKFQDHLNKKEVSMTAREYLDNLKNSENVEEAAKTIPFIGSKHEIQEAEQTRKPKQPVLEWLVKGTINFILTITYLANTGQSESQLPGKADDKPRTCLDDLIVDKQLKKSL
>NZ_LK055284.1|WP_095742719.1|593824_594637_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKDKPVREKKDLDKGLKRSVGKPACCVSKGGSSSNTTSLPNQLARDKGFEKRAQLYAAKAYSRQADKSGKYVDLKKIFFIAISNCTLFPSDVYYISTHNIRDIKTNGHYLKDFQFVFIELPKFTKSKVGQLETTVERWCFFFKYAEETTDEDLRKIAEKSPIIKLAYDELDKFHWNEKDLVAYEERVMDLQKEAAILEQKIDDAKHEGIQIGKEKGRKEGIQIGREKGKIEGKIEVAKNLLKAGVSADLTAKSTGLSLKEIKQIQKEISQ
>NZ_LK055284.1|WP_010082015.1|592280_593828_+|group-II-intron-reverse-transcriptase/maturase
MITSTTVSVPTNNSEAWNQLPWKKCQKVVMRLQRRIVKAVQQGRWGKVKTLQHLLTRSFSGKALAFKRVTENQGKNTAGVDRQIWSTCNTKFQGIKLLKQRGYKPSPLKRIYISKSNGKRRPLGIPTIKDRAMQALYLFALEPIAETISDRHSYGFRPKRSCADATVACHLLLASRNQLQWILEGDIKGCFDNINHEWLMKHIPMEKKILHSWLKAGFLESKTLYSTTAGTPQGSIISPILANLALNGLEKSLESQFGKLGSKRRSKIRSGVNVIRYADDFIISGITREVLENEVKPLVSSFLQERGLILSEEKTKITSITTGFDFLGCNVRRYNKKLIIKPSKESIKKLLNKARTLIKANIANTQAVLIKLLNSLLRGWGNYYSHVCAKRAFNKIDHEIMCALWKWAKKRHPRKGLRWIKNRYFKVMKQRQWVFAAPICKNKPKEIRYLRLLRLIDIPIRRHVKIRADANPLDLKWKKYFDERVKQTKMLASSFSREGSLLLVSPLRMMFSEES
>NZ_LK055284.1|WP_095742718.1|591416_591860_+|hypothetical-protein
MALSKFLDPKNDVAFRRIFGTEKNKDILIHFLNDILGFTGKDEIKEIEFLSTIMDPEIASDKQSIVDVLCRDSSGNRYIIEMVRPESLRSYCLKGEEFIQKETERILKLIEPDVLPSESTHQCELGNQLVPSDADNEPPLDKEDAQS
>NZ_LK055284.1|WP_095742863.1|588470_591236_-|pyruvate,-phosphate-dikinase
MFISENPEKVMGEKLIHYFSQGKCEGNAEMKNLLGGKGANLAEMCNVGIPVPPGFTISTSACKVYYQDNRSSVIQVADYSDPEKNVVTHWNDICSGIKNYMAMLENDIGCKFGDLNNPLLVSIRSGSVSSMPGMLDTILNVGLNDETVVGLAKKSGERFAYDSYCRFIMMYSNVVLQLDHHLFQDVVDNKQQKSGAKSLADLDVDVLKEIVNNFKRIVHEKTGKHFPQNVEEQLLSSVNAVFASWKNDRAVSYRKIHNIPENLGTAVNVQAMVFGNLNDNSATGVIFTRNPSTGEKKYFGEFLINAQGEDVVSGVYTPMPIDGEQKNTMEKLLPSVYRELCVVCEKLERHYKDMQDIEFTVQDGKLWILQTRSGKRTAEAAIRIIVDMVNEGTITKEEGILRIDPKTFDNLLHPVLDVKSDQKVIGKGLPASPGVASGYVVFSASDAEKAAEQGKKVILVRSETSPEDINGMNAASGIVTARGGMTSHAAVVTRGMGKPCICSVSGLYIDKDGTFFSVGDTKVNKGEPITINGGTGEVMLGILPTISPELSQEFKTVINWIDEIKTVKVRANADTPKDAKIAKEFGAEGIGLCRTEHMFFASDRIEFIQKLIIADDENERANALIKLEEMQKSDFKEIFSIMEGREVTIRLLDPPLHEFLPNDQSTIEKIAKSLSKSVESVKNKIAQLSEKNPMLGHRGCRLAISHPEIYSMQIRAILSAASELKKEKKIEVEPEIMIPFIMSEKEFILICELAKKESSVISAGIQTQIPASRAGMTSDKAYSIGTMIELPRAALIADKLAKHAEFFSFGTNDLTQTTMGLSRDDSVNFLDSYKESNIFENDPFEVLDIEGVGELIKMAIERGKKTRKEIKLGICGEHGADPKSIEFLIESGVDYVSCSPYRVPIAKLVAAQFSVRSKFAR
>NZ_LK055284.1|WP_095742717.1|587096_588386_+|ankyrin-repeat-domain-containing-protein
MVYSNDDIRELYRKIATIVKYDDKGIASLKDLQKEPKWKEVNFQDKCEGDNSLEDLLLKHATENNNTRVKDFLLQNGCKPLQQEQITAAINKEEEAPNVEENRADSNEVDSSNSINPGMTAEVLYGQLIQGKKTNSAIFDSFANAVRESNITGDRSVFLDVVKLFTDLDAVIHLTDTASRTILDIAAITKQADVVKVLLDSGKFNEEEKLHALNSAIVQGNVQEVELILGYVSPANRKEALEVAIQVGKTEIVNAFLNSGKLNEENRAKPCSSNGNIGSRPIATVPLTSTNGDNHNNKNKTPVIPEETNTKQTATPNNDNKANGFVDAQFSMPNEQETKYKESKKDFYTSLTKDVVGVVITGLFITAAVMVPFVAGAVVCSVIAALVAIYTGLHVKNSTLSSYREMRENEVERVTGCHPSAQTLGSRKP
>NZ_LK055284.1|WP_095742862.1|586055_586973_-|class-II-fructose-bisphosphatase
MEDLAYKLVKVTEAAALAAYKLAGFGDEKKADQVAVDAMRTVLNSMEINGTIVIGEGERDEAPMLYIGEKVGTGNGPEIDIAVDPLEGTTICAHYKSGAMSVLAATKKGNFLHAPDVYMEKIAVGKNLPEGVVSLKNSIEKNLDNLAKAKKCKVNDLVVTVLKRERHNELIEKIRKLGAKIKLIDDGDVAAVVSLVNGNHDTYIGIGGAPEGVLAAAALSSIGGQMEGRLIFDTDQLKERAKNLNIHDPEKIYTVKDMARGESVFIATGVTSGELVDGVDNICSTSSLIILPNKLIKLQTMQNLC
>NZ_LK055284.1|WP_095742725.1|608723_610841_+|ankryin
MLIRDILRPEQVFSGAEISEKKELLKKLEEKSNTRQGQSEIGGSFDDQYELIIEYLLQIPPSNDRLEILRKQGHSQSDIDEMFSQGDSWYTQSTISSFRSYNSPPSLMDSKYSLSKQVSVWSALDHNLTESQKKLNIELLNVLKYLEWHDEGALFDYDNGQVDELEEFLKNNRGNPDLKAVLNVKRGESGSTVLHAIAGAHIGASYRQEDRPINLLLEAGASPNIQDDKGETPLHRASAMGYDKNIYSLLRGNADPNICDGQGKTPQQTAVDNHNYHVERCFFTDNQKKLRKELNNILNEHRYKEGNLGYIVTLTLFQFLEDLEEFLHEHKNNKDLKVVLNTRDIAGKSEVLEHVKNAFSGFQAADEIKKLLLEAGAKEFTYERKKCLPKSGVLWGNIIPAQKEKLSRSLGILSEIQDINQLEKFVKIAIKSGVRLNYRFTVPSPFEGYSFTDYVIKRISELEKYPKVASGIICQLVSKGAVFGSPESIDVIDELGLECKDHKANMIKAFEGYINDAHRFIKVAKSATTSKLNDIAIGNTTLYLEYSEESKIDIAKITDGARSLWLTHENAGYERNIVKIGESEVEIITQNGKRHYTDLTANSNIALIFCTSFGELEVRLYSDKQNENRIRVEARDQGMLKKLKDCGEEIGKNCSLGYHSVYDAIERGYFEKPAPSSRIVQEEKLQNGKWADQVRYTRKNGAQIG
>NZ_LK055284.1|WP_010082149.1|610789_611617_+|hypothetical-protein
MGRSSTIYKKKWSTNWIVLSFVDKNVGMVFTASKRFYFIFFILIIIFLGGFMHTSKLTAAEKDLNSKLFYAVEQNNLDKVKELIRNGADIHAREISSKKAIHIAVKKGNKNIVEFFLNEGISVNDTNNSGWTPLHYAAFGGELEIAKLLVADGANVRAENAYGQKPIDLIHYGKDDGYKGIMELLLNKGGGKVNDIDKEGWTLLHYAAFNGNLETVKFLIDKGASIHTKNNGRETPLDLAREGGSTEVVNMLSSINTKVTDVSVSQLSIPRKRTV
>NZ_LK055284.1|WP_070356780.1|611777_612992_-|hypothetical-protein
MFWRRTKNENSIAEKFNDDTLQKILTTKIPYSEEGRKGVFTLPCYAISLKNNQAFETFLQEAAKRKFLKDLLNDELTGEILGVQKTTYTVLAYCISEKNSKAVRAVLEVSKENGILKEILDQKMIKEKANSQKISYTLIDYANKQNCKEIVATLKEFKESLNIEVKPVSGNAETSCEDINKDCEDLEIHEPMLASSEEAKNILTKDDIDQTQSSSISTTTFTEVVKRDQTQSCSHSKSRSAENGKSLTEIKHKRKLIKTDTESREKLTDNLTWESKATAQLRGDINKDSELIFETSEKAQNALTEEEPDIPSPTELYFDSKGNSVDEKSSKKAIQPIVAGVVGAVLLASGVALYIMKMPVIAAVVGIAGLVCLSFALYNVLKPSTKLEKVESVEQPIQSSLNLA
>NZ_LK055284.1|WP_015588926.1|614684_615113_-|DUF2924-domain-containing-protein
MEGIEKKVLNLEKKALEELRKIWRKVFVEEAPRNSKKYLIPRLAYRLQEKAYGEISRKGAKRLKYLADRLEQGKRISSDKLPAVGTELILERGEETHAVMVTDKGLIYREEFFTSLSAVAGKIMGMSYNGPLLFGMRDKKVS
>NZ_LK055284.1|WP_095742864.1|615145_615736_-|ankyrin-repeat-domain-containing-protein
MVKFSKKEREEFNKSWKEVLDNSIENINKKDTKGRTILHYAVGMPDPKKVKLLIKKGADVDAADAGKYRPLHLAVMGQRLENTKELIKAGVDVNAVERSSKFAALHLACMVAEIKIVEELVKAGGNVEQKDKFGKTPMDYVRNNKEIKEVLENVKMANKQREFIERIRVISESTAAGVIVAKEEVKELETMDEKVL
>NZ_LK055284.1|WP_010962484.1|615997_616600_-|ankyrin-repeat-domain-containing-protein
MWISQEERDDFNELFQELLAGKLSKKHINRKNENGETMLHRAAKMSTRKKVNWLIWEGADVDARDNEGYTPLHSAALGMRLENVKELIEARADINATEEDGNTALHLACMVGGKKIVEELIKAGAEINLVSISGFSPMYYASDEETREVLKKKGGKIVNKQRELMEKISKVSEKQVVNGGKKLNDVEERAVDVCRLFVRK
>NZ_LK055284.1|WP_010962482.1|617931_618741_-|baseplate-assembly-protein-J
MEQPNIIEPLNFEEIFSRMKEELVSRDESFTALVESDPAIKILEVAAWRELLLRERINEAARSNLLKFARGEELDNLAEFYGAERQDGEEDERFRKRIKAKIKGWSTGGSKEHYRYHALSADRRVKDALVESKVPGSVEISILSTELSTNGIASEELLDIVRKRVTRDDIRVLTDTITVVGCNIIEIDIHSKISIKRPDIIETVKKKFIEKFEATKRLGWKVTKSWIIANLFVEGVENVELIEPRKDVVVLGNECVCLGKLEIELMGKS
>NZ_LK055284.1|WP_015588922.1|618743_619079_-|baseplate-assembly-protein
MRGMNASTGKELEGLNHLKQSIVDILTTPIGSRVMRRDYGSRLLELVDKPINRDLTLEIYAAVAEALQKLEQRFKLEKVKITEVKEGKVNISLDGIYLPNGKNIHFDGIMV
>NZ_LK055284.1|WP_010082109.1|619075_619330_-|hypothetical-protein
MAKAVVCIGDYCSGIPAHVCMSGSSDVFVNGRSVCRKGDILTLGEKLTQGSNSVFVNDIGITRTGDLVSCGFHVMGDSKNVFAE
>NZ_LK055284.1|WP_095742726.1|619332_619797_-|phage-baseplate-assembly-protein-V
MLEHNFAISELNRKLANIIRIGLVKEVDYEKARVRVKIGEFLTDWLPWVTARAGEDRSWFAPNIDEQVIVLSPYGELSLGVVLPAIYQEKYPPPENKKEMNSVKFQDGTKLSYEQEKHHLKIDVVDKITLKVGESSMKITKRGIKLKAKRIDLN

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Crispr_ID: NZ_LK055284_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LK055284_7

832305-832436

Orphan

Consensus_repeat	Method
GCTAAGAGATACCGCGAATGAATCGCGGTATGACGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LK055284_7

>merge|NZ_LK055284|7|832305-832436|CRISPRCasFinder
GCTAAGAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGGCGGCATAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTCTTGTTAGCGGCTAAGAGATACCGCGAATGAATCGCGGTATGACGGT

>NZ_LK055284|7|7|832305-832436|CRISPRCasFinder
GCTAAGAGATACCGCGAATGAATCGCGGTATGACGGT	TCGCGGCGGCATAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTCTTGTTAGCG
GCTAAGAGATACCGCGAATGAATCGCGGTATGACGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LK055284.1\|WP_095742768.1\|837373_838885_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_LK055284.1\|WP_010082423.1\|824491_827056_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226227
NZ_LK055284.1\|WP_095742767.1\|836393_837293_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_LK055284.1\|WP_010082416.1\|814008_814557_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_LK055284.1\|WP_080717633.1\|831450_831633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010082404.1\|832447_835081_-\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_LK055284.1\|WP_007548610.1\|835788_835995_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_LK055284.1\|WP_095742770.1\|841356_842337_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_LK055284.1\|WP_006279340.1\|836015_836381_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_LK055284.1\|WP_095742769.1\|839412_839622_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_095742766.1\|827048_829454_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|172418
NZ_LK055284.1\|WP_010082402.1\|829463_829760_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237550
NZ_LK055284.1\|WP_010082420.1\|819119_822098_-\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|377390
NZ_LK055284.1\|WP_010082403.1\|829868_831404_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234829
NZ_LK055284.1\|WP_010082408.1\|839796_841317_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_LK055284.1\|WP_095742765.1\|822094_824482_-\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|377390
NZ_LK055284.1\|WP_007548602.1\|842465_842669_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|179057
NZ_LK055284.1\|WP_010082417.1\|814679_815312_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_095742764.1\|815301_819030_-\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|377390
NZ_LK055284.1\|WP_010962890.1\|835246_835690_+\|PAS-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LK055284.1\|WP_095742768.1\|837373_838885_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_LK055284.1\|WP_010082423.1\|824491_827056_-\|hypothetical-protein	gnl\|CDD\|226227	COG3704, VirB6, Type IV secretory pathway, VirB6 components [Intracellular trafficking and secretion].	3.69714e-21
NZ_LK055284.1\|WP_095742767.1\|836393_837293_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	4.22805e-122
NZ_LK055284.1\|WP_010082416.1\|814008_814557_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.38121e-49
NZ_LK055284.1\|WP_010082404.1\|832447_835081_-\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_LK055284.1\|WP_095742770.1\|841356_842337_-\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	3.35606e-114
NZ_LK055284.1\|WP_006279340.1\|836015_836381_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	2.2013e-65
NZ_LK055284.1\|WP_010082403.1\|829868_831404_+\|lysine--tRNA-ligase	gnl\|CDD\|234829	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.	0
NZ_LK055284.1\|WP_095742766.1\|827048_829454_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|172418	PRK13898, PRK13898, type IV secretion system ATPase VirB4; Provisional.	0
NZ_LK055284.1\|WP_010082402.1\|829463_829760_-\|hypothetical-protein	gnl\|CDD\|237550	PRK13899, PRK13899, type IV secretion system protein VirB3; Provisional.	5.28476e-51
NZ_LK055284.1\|WP_010082420.1\|819119_822098_-\|type-IV-secretion-system-protein	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	4.79553e-23
NZ_LK055284.1\|WP_095742764.1\|815301_819030_-\|conjugal-transfer-protein	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	7.52705e-20
NZ_LK055284.1\|WP_010082408.1\|839796_841317_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_LK055284.1\|WP_095742765.1\|822094_824482_-\|type-IV-secretion-system-protein	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	7.32396e-32
NZ_LK055284.1\|WP_007548610.1\|835788_835995_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	2.14386e-14
NZ_LK055284.1\|WP_007548602.1\|842465_842669_+\|50S-ribosomal-protein-L31	gnl\|CDD\|179057	PRK00528, rpmE, 50S ribosomal protein L31; Reviewed.	1.51499e-21

>NZ_LK055284.1|WP_080717633.1|831450_831633_+|hypothetical-protein
MTNSASPLIMKLKLLYLLSPICRLKGKDYLMYRRLMFNFLQYIDTVCLYKTSSTSRFLSK
>NZ_LK055284.1|WP_010082403.1|829868_831404_+|lysine--tRNA-ligase
MTNWPFQEAEKILQEFPNKKEIIFETGYGPSGLPHIGTFGEVFRTTVIVNALKKIAPGIKTKIIAVSDDMDGLRKIPDNVPNQEMLREHLNKPLTMIPDPFGTHQSYGHHMNSLLCKFLDMFEFEYEFRSATECYKSGVYDEKLLLLLKNYDKVMDVMLPSFREERQQTYSPFLPICPKTSQVLQVPVIETNTEKGTITYEDPNGEKIEVPVTKGKCKLQWKPDWGMRWAAFGVNYEAHGKDLTPSAVLSSQICEILGEKPPLLFCYELFLDKEGKKISKSKGNGISIEEWLTYAPTESLALYIFQSPKKAKRLYFDVIPKSTDEYLEFVKRYHENKEKDINNPAWHIHQGNVPSIETSGINFSLLLNLAAACNAENKEILWGFISSYAPNVTPENNKMLDRLSDFAVKYYHDFIKPTKSYKTPNEKEKAALLDLKDTLHSLSTTATAEEIQSQVFSIGKKYDYTNLRDWFQLLYETLLGQKTGPRMGSFIKLYGIGNTISLIESATKCIL
>NZ_LK055284.1|WP_010082402.1|829463_829760_-|hypothetical-protein
MSTGSIQTDQLFKGLTRPAMLFGVSYMFAILNVLICMLIFINSNDLRVILLMLPGIHGLGYIASAKEPLFIELFMVKLGKCSKCLNRFYHGVNSYDIA
>NZ_LK055284.1|WP_095742766.1|827048_829454_-|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MLRFRAIQSKNKSTLNREVHAAEFIPYSCYWNSTTLMTKENWLVKVIKLSGFAFETADDEDLVIQNNIRNQMLRSISSPAFSLYFHTIRRKKNIFSDEFASQGLPNFFANHVNLKWREKHATRQSFVNDLYITIIRRADTKGVEFLSHLLKKFGHVTSKHAWESDIRATYEDLEETTNRVVTSLRNYSPKILGVKETPDGLFCEIMEFLSRIVNCGFVTNTLFPLRTEISRYLPVHRLFFGRKMIQVVTHNESKYAGIISIKEYGNHTSAGMLDSFLQLPYEFIITQSFQFINRQMAIGKMQIQQNRMIQSADKAISQIAEISQALDDAMSGKIAFGQHHLTILCIEKSPKSLDNALSLVESELSNCGVYPIRERVNLEPAFWAQIPGNFDYIVRKATISSLNLAGFASQHNYPTGNKFNNHWGDAVTVFDTTSGTPFFFNFHIRDVGHTMIIGPTGAGKTVLMNFLCAQAMKFSPRIFFFDKDRGAEIFLRALSGIYTVIEPRTKTNFNPLQLDDTSDNRTFLMEWIKSLISVYNDKFTSEDIARINDAIEGNFKLRKEDRFLRNLVPFLGLAGPDTLAGAISMWHDNGSHAAIFDNKEDLLDFSRARVFGFEMASLLKDPVALGPVLIYLFHRISISLDGTPSIIVLDEAWALIDNPVFAPKIKDWLKVLRKLNAFVIFATQSVEDASKSTISDTLVQQTATQIFLPNLKATSVYRDVFMLTEREYILIKHTDPSTRFFLVKQGVNAVVARIDLKGLDDIINVLSGRAESVLLLHDILNEVGDNPKVWLPIFYQKVKNV
>NZ_LK055284.1|WP_010082423.1|824491_827056_-|hypothetical-protein
MFKTKLSLLLIAIFLLNIDFLLSYPVLADGVSGTDKTEFVSRFNSTGSFSRASNPDCGAFKTAAALAGIAIAVGAIFTGIVLIVSSAGLFTALVIVGMIAAIVGVWKAIGGLVVCEHSFVKHPVARDHDGKYKNFKLEDTGYSGCTNENYQTEEEYFSCLQNKAREDVNKKDYDGKRAEKEALNSNVQESTESYYWPKNGVQYSEYIEVCHRNPLTFGNLFNKVDFNSRGKPGYIDFDVREKDTGYVDGSWSSKVDGGLECRVLKAGQSEPIHGATFKAVRKTGRLCVELASVSMLGIEMTPWPQGVDMGCTELPPDPLAPMCEKSVMIFKNKDGTGEEKVPIGNNDDYKTIIRSKEKRLNGQGGKIFVGYDNAGCFSSYVSEACYNQAGSKSLAPIPVTSMIVQCIKESLDNLVAGKGAPNGESFISVAQKRLKNTVTAVLVLALILFSIKAMSGGVQRPQEMYMLIIKFALVIYFTTGSTMSHYYGELTRLSNGLSEIVLKASSESKGICNYKAGTDYEYTRAGKRVSYSYLAPWDRLDCRILFYLGAPLDGIGGKIGTGGVATLAVLLGAAPVLLVAGSVIGIIFAGGQILVALVCIFMAVLMMMVILWLCYVFILSLVALSVIIILSPLFIPMVLFQHTKGYFEGWVKELITYSLYPVILFAFLSFMFIACDKIYFKNLNFELDESYKNEQPDKSYEKKQAEISYSKKKQWFKLKDGECDKNETTLACMMQNYSFKKSSILGLFDFTYMEFGSSLIGELLKLCLVLFLFYHFLNILPGMAAELAGNHRAALGSGQTPGQIVGKALSAAKAAAGGVAGVAGAAAKKLSGGDKSKSRGSGSSSSESVNKSTE
>NZ_LK055284.1|WP_095742765.1|822094_824482_-|type-IV-secretion-system-protein
MLKFLLIIPFFFLSGCGEHHCIKPENLSGLREKLDIVSTEQKWVDSGVNISDRIRVTEIDIVPSKVNFCPKQYADFAIGPGRNDVALPFALKKGDTISFSVIGSKVCKDKESETKIRYLKIDEKCSEQETEHFAHVLNQEKCQGGKDGICPNKYIIGDAQWLSGREYWFSKLDQDERKKEIENIINSIKQGENIDCSKLSGSSASKIDTHILNSLCRRICKFSSGRRGEDCVYIEYNNIEIELFNALNSSGESVVAEIISNVLKGKQVKTDITFLKVGMDNETLEHIPGGGLCTSCDHKMENDHQIPSLTFSLCSRNDKSCYNTNDKGGFNIRVTKNHSLENSLYISVSDKFPEHKPGENQADISVDISKVHDMENLKGKLKDKTGTIYYGIRDHGCDYKNEGQFSINLTTKEPPTKTFSAIYNFFDEKVKTAFFGSNYKDPNAIHSDTSPVKSLYESFIKSSRTNTIRSTIISLLVLYIILYTLYYFFGLTHISIYEFLIICVKIGIIAQLLQDNSWDFFYNNAFSIFINTPKQLIEIANFRGTTSNVFEFLDLPLNRFLSSHSVLLIVSLIFSGPLGIVSFCLVIWGLITVSLSIFNALFSFITSIAIVALLLSLAPIFIICLLFAYTRQMFHNWVKNLARFAIHPVVLLIFISLISQVMDYIVYSVFDFEVCSTCILNINLKIFNPCIFYGYASKYTPNITAMMAFVILGHAMKALVEASSTISDSLFGAYVASEPGRQYQQSLMGTVGLDEQSVQRRERGGASQQSGTSRPQIPQGTQRSTPQIPPPGRQQ
>NZ_LK055284.1|WP_010082420.1|819119_822098_-|type-IV-secretion-system-protein
MISKRSLLLILCLAITGCNMDCVEPGLQSRNTSVNVDVPVHKAGEEVKIHWVDSGQVISKGEEIKFTLDGSVNFCPFKEDKNPRKVLVPASFCADGSEPNYSKAANINDVPNNYGVDEKGVNKNELCGGKGFGSNRRYVDTGIKVNPGDKLSFSLVPRKITIDYDNPGGKGISFDDNCYRAEEGGEKVSESEILNVSKQEGEEFFCEGKDGKRNKIKFLPLDKTKAKESKVLVGNGYTPYDNKVHFNKGYVKNNEPWIHGSLFDLRRAKIGLNELCDGKNCSLDEKKKYSSYELNCYYQNTCYTRKGIWSYDSGRAGERNCVSSIRYKKYDKGNKCDMYSYLEKMEGNVKAGSFTEDDKSWAEALVAKIGDLGDQDTDKGMQCLPDNEVGARKDNVCSQISDNFEDFSLKLNSDYAVNDNVKYGSSVMLAIADYGYYGANRGGYHVKVTRSCEYINGEKLYVYLGDNPPGDPSAPKTNDFKKVEHLDKTKDKVYYIIDGGLLTDECKDKKPITDECKPKKIYFGINVSNVEKDDITDKNGKYYENNKYSVTLFVKRKINDFISSNVNGVFKFIKEEVIGDSVKDSYKGYARGLLQGVRALLTLYVIFTVIGYMLGTIQLSKFDFIVRMFKIAFIAFAFSDRSWELFGTTLSRLFIDGSTYLVDSFSGYIGEGGRKFAFLDLTAGVLFTAETWLKFLSLMLSGPFGFIAFLAILYATFMFLKCIISATFKYVISTVLVAFLLSLTPLFIVFILFQKTKPLFDNWIKTLAHVSLEPVILFSFLSLLNQLMYSVLYNLTNFSACYQCLISVNFLSYDLCLMKSILPLGYSPGTSVDVALSTGERAGGHFAALPIDLIQAFIYLIIAGAMEAFVSISETMVQTLFSSGYGVTGGVGTVAKSASQAMLSTVGLDDKTQSMIQSIKQKMSKDRGKIEAKLPNTPKQPDKKEDSKGSSDKTTSDRPKTLKQSDQQKNSDETIRSDPSAKAKNKEENGEE
>NZ_LK055284.1|WP_095742764.1|815301_819030_-|conjugal-transfer-protein
MQSRLGKCWFRVLLLAAYVLITGCSKNDMPFPRCISADYFGPKPIAVSAHFSSDHDAFIPGDGEVIDPETGEINYGFHHNQVVKWEDTGLETNGDSLKVRVNGAWTSWSNNNKKESKKGSYTLQSLEQLKYATKFEGKQSDNSLPNFHLVCNDYKPSIQKFSSKPNASCTVNCKCINEDDSANTVSRGAPCWFTNGHGAYLLFQTGKDDPNENLKLMRDPQYPTVHLGYNSTAEGDNGFFTLDRDNTKLKDRNCNELKLKKGWKIYVKILDRYYLDNVGGYSFEFLSGVQQPSSFGFFDYIYNYLKCVLLINENCKEHFNSNDPAVAQAMFENIAEKSTSFHNFVLSLLVLFVMISSLLYLFGMIRETKHDMLIRMMKITLVIVLISPGSFRFFYDHFLVLFVKGLEQLISVITNFAPNMNTGSIAQGDEAKLFSFMEDMFNKFFAYSVWKKFAAFLHYQMWASLLMIPAIFIGIVLYFLLCLYAYIIFLSGFMGIAFLIAIMPLFLISILFSPLKSLFEGWIKFCISFCLQSIMIFTLLSLLASMIMNTFYRQLGFTVCYNKWFEVKLCAPKWVFGGFCIVDKQYFGWTPGQIFVPYTLGEASSLNIDKSIEGIEKISREGGTIKFTGGAGYIPLPPDYPKDKNGEHIKGFRYIDYPFFNPIPGTKDNPADHYIAESDMVVSNGCSEKDLVRLTNSLSHASERADIILLINNIEKRIGDVSEIIKRYCQDINKCNSYREIINEIRSLVRSAVEKQGCRILKLHDLYKDPNSEYCQKCKDCEDCKNYQENSDYQRVQDIQRGYLINAGEIFILFLLSFLMFSLRTFVQQMGSSIAGGGFSVYNISSMYQASPLTGIMEGFKQQWQNFAGRGLESLGSWATHLPDRLAGGAANLLGRVPRVGGVLKYAIDVPRKFVGATIEATKFATSPENDVDKLEEKIYRAFGVDKEDITHRRIGKYLDYYKGYVGSHLGYTIEDAMKFTWEHGLDSIGKHGYDHNLLYRAKEYRRDFLEKLHDYTIGRKREPEKDNPDQSNKVERELGTELVRDNHDQPLEEGDPLRLRGGGQPDKVVRELSTEQEDKPNQLQHDQPTEEDKPDQSNEVTRNLGTEPKGSDEIDDFGSAFEGMEKRAEREGRRNQDKVYNLSPLFEMNTPEAVEKRAERARRKEERDRKDEVYNLKPLFKEPKNPEEYVKALFEMNTQEAIKKRAEREEKRNREDSKRKLPEPMRKPDAKGDEKRIEDED
>NZ_LK055284.1|WP_010082417.1|814679_815312_-|hypothetical-protein
MKTNKNFKGLDYYKLQQDKDGNIKLNDYDDILNARRARVDLLRDNTSLDKDVNFAKLNKALSEKFVDNHSLLSEFDKEDKEIVQERIKVFSILESLEDLKSVKSEDLLEVSLLLSDLSFIERNVVLNTDQNSDLAGFKNLFIEKKASGEEYSEEECRGFLDNIDKINTIIKLELESRIEGLNHDEKNDHDDLQDEIGQAINAAGKSEKDN
>NZ_LK055284.1|WP_010082416.1|814008_814557_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MLRIIAGKYRGRKITTGKHLAARPTMSIVREAIFSILSSRKPIYNLNVLDLFCGSGSFSFEALSRGAKHAFMVDSDYYNLQLPKKTAEDFGITDNVTLICCSANCLPKPISKCDIVFIDPPYNSNLVESTLNGLANSGWLSDDALIILEIRKNEGFECNKDFSIILERIYGIARIIFLSLST
>NZ_LK055284.1|WP_010082404.1|832447_835081_-|alanine--tRNA-ligase
MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRAVSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLDKNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHGSPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCGRTENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVLRRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFKDTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDILKEKKINFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYEFNEVSDAKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLRKILGDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQAIDEGAMALFGEKYGNQVRVVKIGDSRELCGGTHVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLYKKLVSAENIKSTEINGINFISHTFTDIPANVIREFVLQQQKPKTVIAFTATEKDKTVLIIKVSKDLINKISAKELISIAVKKNCGGNAELAQTGCDSNKIDDAITAIYSKITASKHSTSYHHEPSYRRGANKQRDT
>NZ_LK055284.1|WP_010962890.1|835246_835690_+|PAS-domain-containing-protein
MEIYVGKEKRIANVVTQHWNDIKGSDRDWPERHEIDTAEIMESWQHCFVIEVKDQGYICENAGEKAVEFYGFEKKTRIDNKYAIDAPFLRLYKIDAVIDKLDTVIESKCPINEEEESESVKMRQVLLPLGNKEGITHILGVITFKLL
>NZ_LK055284.1|WP_007548610.1|835788_835995_+|50S-ribosomal-protein-L35
MKKIKLKTKSSVKKRFHLTAKGKVISTQSGKRHGMVKRSKSNIRNQRGTTILGKSDSRIVKLHMPYGI
>NZ_LK055284.1|WP_006279340.1|836015_836381_+|50S-ribosomal-protein-L20
MARVKRGVTTHARHKKILKLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRTRKRDFRSLWIIRINAAAREHGLTYGRFMHGLTLAGIDLNRKILAEMAVNYKDDFAKLVETVSGKLAENS
>NZ_LK055284.1|WP_095742767.1|836393_837293_+|methionyl-tRNA-formyltransferase
MRIIFMGSPGFAVNSLSLLLKSKSEVVAVYTKAPRPSGRGQKPTKSPVHVIAEESNIEVCTPISLKFSAEQEKFRNFKPDVAVVAAYGLILPREILNIPKYGCINIHPSLLPRWRGAAPIQHTILAGDQETGVSIMQLDEGLDSGTILKQEKFLIEKNDNYKTLHDKLSKLGSDLLLKVLNEIEKQLPLKQNDNDACYADKVEDYKIYASDACEVAYRKVKAFYPKAFIKIENKRIRILDADFEALASEQGKIVNDNMHISLKGGTLIPKVVQMEGRNPCSIEDFIRGLKSSMVKKFIE
>NZ_LK055284.1|WP_095742768.1|837373_838885_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MKIKRALISVYDKTNIIDLASFLTQQQIEILSTGNTYKVLSSAGIKTQEVSDYTQFPEILGGRVKTLHPKIHGGILCNREKHKTEIQNLGIEPIELLITNLYPFWETVSSGSNEEQIIEQIDIGGVALVRAAAKNFRFTSVISSIQDYEALKAEMIENNNKTTLEYRKHLATKAFALTAHYDSNIHSWFLSQSKNNELPEFFALYGHKVQELRYGENPHQKAAFYSNQFTEYPLEKLHGKELSYNNIVDIESALNITSEFEEPAAVIIKHNNPCGAAIGNNALEAYEKALSCDEVSSFGGIVALNREIDLKLAEKLNEIFLEVVIAPSVNNEALKILQRKKNLRVIIHKSFQQNVKYQTKNVVGGFLVQENNDHTIKAEQVTECTATDKEKKDLIFAWKICKHVKSNAIVIAKDGCAIGIGAGQTSRIDSVNIAVKKAGEKCKGAVLASDAFFPFPDSIVESAKHEITAIIQPGGSLKDQDVIKAANENKIAMFFTGVRSFFH
>NZ_LK055284.1|WP_095742769.1|839412_839622_-|hypothetical-protein
MTHRNKKTYLTNSASPLIMRLKLLYLLSPICRLKGKDYLMYRRLMFNFLQCIDTVCLYKTSSTSRFLSK
>NZ_LK055284.1|WP_010082408.1|839796_841317_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MNIKSVVLCILDGWGNGIENNKYNAISNANPPCWQYISSNYPKCSLSACGADVGLPGGQIGNSEVGHMNIGSGRVVIQSLQRINQEIGTIENNVNLQSFINDLKSKNGVCHIMGLVSDGGVHSHQKHISTLANKISQHGIKVVIHAFLDGRDTLPNSGKKCIQEFTKSIKGNDTRIATVSGRYYAMDRDNRWKRTIEAYEAIAFAKAPCHDNAVSLIENNYQNNITDEFIRPAVIGDYQGIKPEDGVLLANFRADRMIQLASILLGKTDYAKVAKFSSILSMMKYKEDLKIPYIFPPTSFADTLGQTIEDNKLRQLRIAETEKYAHVTFFFNCGKEEPFSGEERILIPSPKVQTYDLQPEMSAFELTEKLVEKIHSQEFALIVVNYANPDMVGHTGNIKAAEKAVLAVDDCLAKVLNAVKKSSNTALIVTADHGNVECMFDEENNTPHTAHTLNKVPFIVSCDNLKLRDGRLSDIAPTILQLLGIKKPNEMTGSSLISCITLCHSS
>NZ_LK055284.1|WP_095742770.1|841356_842337_-|ACP-S-malonyltransferase
MIFAFPGQGSQFVGMGKSLYSEFSVARQVFNEVDSILDGKLSHLIFNGPIEELTITENAQPAIMAVSIAMLRVMEHVFGKSLFTDHNVKYVCGHSVGEYTALCAAGALTLESAIKLLKVRSEAMHEASLKYKGGMVALLGAEINEVEDILKSVQIEGICEIANDNGGGQVVISGTREALEMLPDLFKNSSVRKLIKLQVSGPFHSSLMKPADEKVLEFLKGIKITRPIVPLISNVTAKEESDPKVIKTLLAKQVVSRVKWREMVLYMSSRGINKFVEIGPNKVLSNLVKRIDQSISTKNIDSIGDIDSFFNESLVLTAKNLKVGLS
>NZ_LK055284.1|WP_007548602.1|842465_842669_+|50S-ribosomal-protein-L31
MNYHKIIIVMTDGQEFETRSTYGKEGDRVKLDRDPLTHPAWTGSLTSGLASKTSKLAKFNDKYGSIF

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Crispr_ID: NZ_LK055284_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LK055284_8

894488-894598

Orphan

Consensus_repeat	Method
CCGCGAACCGTCATACCGCCGCGGTATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LK055284_8

>merge|NZ_LK055284|8|894488-894598|CRISPRCasFinder
CCGCGAACCGTCATACCGCCGCGGTATCTCTAGATCCCGCTAACAAGTAGCGGGATGACGAATTACTTAACCGTCATACCACCGCGAACCGTCATACCGCCGCGGTATCTC

>NZ_LK055284|8|8|894488-894598|CRISPRCasFinder
CCGCGAACCGTCATACCGCCGCGGTATCTC	TAGATCCCGCTAACAAGTAGCGGGATGACGAATTACTTAACCGTCATACCA
CCGCGAACCGTCATACCGCCGCGGTATCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LK055284.1\|WP_010082016.1\|893962_894406_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372314
NZ_LK055284.1\|WP_010963056.1\|888645_889473_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|223982
NZ_LK055284.1\|WP_010082357.1\|879476_879734_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_095742780.1\|895921_896419_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010082336.1\|903467_904994_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_LK055284.1\|WP_038199260.1\|902147_903164_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_LK055284.1\|WP_095742779.1\|894685_895849_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_LK055284.1\|WP_010082395.1\|882281_883232_+\|complex-I-NDUFA9-subunit-family-protein	unknown	unknown	gnl\|CDD\|187579
NZ_LK055284.1\|WP_038199264.1\|899319_900357_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_LK055284.1\|WP_095742781.1\|897433_898216_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NZ_LK055284.1\|WP_095742778.1\|889602_891201_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_LK055284.1\|WP_070356981.1\|879750_880518_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010082015.1\|891994_893542_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_LK055284.1\|WP_010963054.1\|886030_888481_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235840
NZ_LK055284.1\|WP_095742737.1\|884302_885754_+\|phage-terminase-large-subunit	unknown	unknown	gnl\|CDD\|227697
NZ_LK055284.1\|WP_080717640.1\|901968_902193_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010962965.1\|900349_901306_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NZ_LK055284.1\|WP_006279859.1\|896739_897441_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213228
NZ_LK055284.1\|WP_095742777.1\|880701_882231_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
NZ_LK055284.1\|WP_010962967.1\|899126_899309_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901

Protein	Function_ID	Function_description	E-value
NZ_LK055284.1\|WP_010082016.1\|893962_894406_-\|hypothetical-protein	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	9.78869e-15
NZ_LK055284.1\|WP_010963056.1\|888645_889473_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|223982	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only].	4.41634e-111
NZ_LK055284.1\|WP_038199260.1\|902147_903164_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	1.33254e-66
NZ_LK055284.1\|WP_010082336.1\|903467_904994_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	4.68335e-153
NZ_LK055284.1\|WP_095742779.1\|894685_895849_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_LK055284.1\|WP_010082395.1\|882281_883232_+\|complex-I-NDUFA9-subunit-family-protein	gnl\|CDD\|187579	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs. This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.97908e-97
NZ_LK055284.1\|WP_038199264.1\|899319_900357_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	7.27612e-158
NZ_LK055284.1\|WP_095742777.1\|880701_882231_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	3.84404e-133
NZ_LK055284.1\|WP_095742778.1\|889602_891201_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	2.926e-86
NZ_LK055284.1\|WP_010082015.1\|891994_893542_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	6.19767e-142
NZ_LK055284.1\|WP_010963054.1\|886030_888481_+\|type-I-DNA-topoisomerase	gnl\|CDD\|235840	PRK06599, PRK06599, DNA topoisomerase I; Validated.	0
NZ_LK055284.1\|WP_095742737.1\|884302_885754_+\|phage-terminase-large-subunit	gnl\|CDD\|227697	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown].	6.41577e-60
NZ_LK055284.1\|WP_010962965.1\|900349_901306_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	1.57525e-180
NZ_LK055284.1\|WP_006279859.1\|896739_897441_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.57469e-102
NZ_LK055284.1\|WP_095742781.1\|897433_898216_-\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	7.78975e-73
NZ_LK055284.1\|WP_010962967.1\|899126_899309_+\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	2.18835e-21

>NZ_LK055284.1|WP_010082016.1|893962_894406_-|hypothetical-protein
MALSKFLDPKLDLTFKKIFGTEKNKNILIHFLNDILGFTEINAIQEVEFLSTIMDPEVASDKQSIVDVLCKDSHGNRYIAEMVRPESLRSYCLKGEEFIQKETERILKLIEPDVLPSESTHQCELGNQLVPSDADNEPPLDKEDAQS
>NZ_LK055284.1|WP_010082015.1|891994_893542_-|group-II-intron-reverse-transcriptase/maturase
MITSTTVSVPTNNSEAWNQLPWKKCQKVVMRLQRRIVKAVQQGRWGKVKTLQHLLTRSFSGKALAFKRVTENQGKNTAGVDRQIWSTCNTKFQGIKLLKQRGYKPSPLKRIYISKSNGKRRPLGIPTIKDRAMQALYLFALEPIAETISDRHSYGFRPKRSCADATVACHLLLASRNQLQWILEGDIKGCFDNINHEWLMKHIPMEKKILHSWLKAGFLESKTLYSTTAGTPQGSIISPILANLALNGLEKSLESQFGKLGSKRRSKIRSGVNVIRYADDFIISGITREVLENEVKPLVSSFLQERGLILSEEKTKITSITTGFDFLGCNVRRYNKKLIIKPSKESIKKLLNKARTLIKANIANTQAVLIKLLNSLLRGWGNYYSHVCAKRAFNKIDHEIMCALWKWAKKRHPRKGLRWIKNRYFKVMKQRQWVFAAPICKNKPKEIRYLRLLRLIDIPIRRHVKIRADANPLDLKWKKYFDERVKQTKMLASSFSREGSLLLVSPLRMMFSEES
>NZ_LK055284.1|WP_095742778.1|889602_891201_+|iron-ABC-transporter-permease
MFLRVFKNIFLFLVSILFVCPILSLISILFTDSANSEWVISTLFPEYILSTLILMVGVGGISFIFGVIPAWLTTFFSFPGSKIFEIALFFPISIPGYIVAFVYVNTLEFSGPVQSLLRDILDWSKGDYWFPEIKSLGGGILVMGFSLYPYVYMLVRSSLKNVSNSVTIASTLGFSSLKSLFSVIIPSIRPSIIAGLSLVLMEVITDFGTPQFLAIDTFTTGIYRTWFLLHDKYSTTVLAVAELIFVVILIAIEKKLQKKGISYSSINTNSDYHNKRSISGAMPLIFAYLMCVLPILIGFILPMIPLIYWSIEKGFFIYEARFYNIIANSISLSFITALISISIAIMIGYTARKNKVINNIARLISLGYAIPNAIIAISIIIFLSRISSFITQYVVEISLVGTIGALVYSYLFRFFAISFKAVESGLKKTPNEIEWTAYTMGHGPISTCLNVHIPLIKKSILSGFLLVFMDTIKELTATLIIRPFNFETISTRIYELVSDERYREAAPFSLIIVIIGLISTITLFTLDDKDKK
>NZ_LK055284.1|WP_010963056.1|888645_889473_-|rhodanese-related-sulfurtransferase
MSFVIATFYHFVELSNYYDMKDEIKAACNNVELKGTILLAEEGVNATISGERNAIDKIFDFLRSDYRLRDLTWKESAAEYQPFSKMKVKLKREIVNLGVSNLDISLRGKYVDPEHWDDFTSQPDVLVIDTRNEYEVKLGKFKNAINPHTQCFREFPQWTESFSESKDLKVAMYCTGGIRCEKSTAYMKSLGFSDVYHLKGGILSYLEKTYNKNGNWKGECFVFDDRIAVDNSLTPSNTIKCIFCSNQVSTDKLKSVPRGQVVCSDCKLQCYSYNK
>NZ_LK055284.1|WP_010963054.1|886030_888481_+|type-I-DNA-topoisomerase
MALLIVESPAKAKTIGKYLSKEFKVAASFGHVRDLPAKNGSVDPDNDFTIKYETIEKAEKYIKELVKAASKTSDIYLATDPDREGEAMAWHVIETLKEKKAISNENNIYRVVFNEITKRAVQEAIKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKIICEREDEISKFITQEYWSIKAEMQNSKDEAFFAMLSHYDNKKLEKFDIKNEEEAKNLVREIESRQYAVSTVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKSVMRIAQNLYEGIDIGGETVGLITYMRTDGFHIADEAINSIRGSIKSLYGDKYLPQSPRKYVKKVKNAQEAHEAIRPTDINRTPGSIKDYLTPEQFKLYDLIWKRTIASQMESAILDQVVVEISSTDQKVILRASGSSIFFDGFYRVYQDNIEAENEGLLPAMKEGEACKLISVEPKQHFTQPPPRYSEASIVKKMEEIGIGRPSTYATIISVLQDREYVSLDSKRFIPSSRGKIVTIFLETFFQRCVEYDFTAQMEEKLDLISNGHADWKKELGHFWVPFFGHVNSVKQMTHDEVFSGIHDLVIDWFCSEEGRKEVNTKCPACLGGILKLNFGKAGVFLGCSNYPECNHTKEITGSNDNSEYPKSLGIDDITNQEVMIKKGPFGLYLEFNNELKKKKTVSIPKDINVNEIDLSTATQLLSLPKVIGEHPETGKEVKIGLGRFGYYIFYDGRYFSLKKSSKEVLNTELSEAVQIIANSPRKELKSLGVNEKGKEVFICNGRYGFYIKCGKTNVALGKSADIESIDLEKALELIKGKK
>NZ_LK055284.1|WP_095742737.1|884302_885754_+|phage-terminase-large-subunit
MNFLKFIELCFQTVVPGCEYNDYQYIKVIADRLEAASAGEVKRIIFNMPPRSMKSMCISVAWPAWILGNQPTARIIVASYSQRLSEKHSLDTRCVMQSSWYRALFPEIELSKDQNTKYKFQTVQRGYRIATSVGGTLTGEGGDFIIVDDPLSSAQALSETLRKRATNWFDQTLVTRLNDRKKGVIVLVMHRLHQEDLTGHLLSKPKNIWHHICLPMISENKQVIYSIKKPMPPVPVIRVAQHCATRRLYNKPASPVRILYSREEGQLLYPLDGGKEEVEIIKAELGSYAFAAQYQQNPLPLSSGIIKPEWLKRYKKFPDNLSHITQSWDTAVSTSNMSNFSVCTTWAKMDNKFYLLDVYRAKLEYPKLKEQVLSLAARWTPHAILIEAKTSGQQLVQELKTNSDLPIIEIVPHDDKLTRFHQIVPIIESGKVFLPHQAVWLNDFEYEILMFPETRHDDQVDSTVQYLQWVRNSTSRVAAIRAL
>NZ_LK055284.1|WP_010082395.1|882281_883232_+|complex-I-NDUFA9-subunit-family-protein
MTKRVIIFGGTGFIGKHIVRRLAAEGYLIKIFTRNQEKAACLKLCGNLGQISIFKGDFFDEKSVLDGMEECDVAINLVGILYEAKKHDFYAVHVKIAERIAKAAKMKNVPMMIHFSAMGIENSKLSKYAKSKLEGEKAVTSAFQKAIIIRPSLVFGKEDNFFNKFARLATILPFLPLIGNGTTKFQPICVTDLAEVVYRIISFNKQDKKIYNMGGPKVYSFKSLLKFILNVTNRKCLLINVSFPMAKLIAFFLENKIISMLLKPITGDTNPMLTQDQVKVMMNSSIEKSVDLETMKVRPLAIENVVPEYLKIYRKY
>NZ_LK055284.1|WP_095742777.1|880701_882231_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MFKWNTNNIIDATGGRDVNGCNWIHSSNISTNTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAIAAIVSEGKYKSFPLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRKVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDSNQLKSDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY
>NZ_LK055284.1|WP_070356981.1|879750_880518_-|hypothetical-protein
MFTGKNEKSTSILAKVGNAASGVGSFLGRGVKVLVKGAVYPIWPKNWFKSWDEMRHDIKNGGRSIIGNPLEEYDPPIETTQASEDLGVQIMEQKKGTGKVTFLASRTLTGDIPYLTPERLGEIKQNLPNVTIFKEENKIVIEVDVKKIIEDIKYKGKSPEEIKKLAIEEIKQKVDGNLKDLAKITGGEFKVHTDLKLLYGIAEKLYKEYDNQKQSSDKVVKSDVGQPSETIASGEKKWAQEAIKAGKSQSCGMQK
>NZ_LK055284.1|WP_010082357.1|879476_879734_-|hypothetical-protein
MSEAKKIEERHHSLTVPGDMYHLQPGVITGKRVSGIEPFLKEQQDMVKVRELVSSLNLEDASGDAIKPLSTPNVEKNEERGKGRS
>NZ_LK055284.1|WP_095742779.1|894685_895849_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKVSVLGSTGSVGKKTVDLLSKRKEEYQVEALSAHSNFALLAHQAKLLNAKYVAISDERLYKDLKESLLGTDVKIAIGATNIATIPVDLSVVAIVGIAGLGPVMEVIESGTKVIALANKESIVCGGKLLLKKAKEKNVQIIPIDSEHNAIFQILQNDDKCVEKIILTASGGPFLNYSLEQLRNVMVDKALSHPTWNMGKKISVDSATMMNKALEIIEAHNLFNISPDKIEAIVHPESIVHGIVTYKDGFNFAVLAETDMAIPISYALSWPERSALNRKLDLTKQGKLTFQEPDHKRFPALKLSMAVLNSSAPQTNSIVLNAANEIAVNEFLKSRIGFLKIVEVVESTMESFGSYTDINSLSDIINIDYESCIIAHKIVESKVVAYS
>NZ_LK055284.1|WP_095742780.1|895921_896419_-|hypothetical-protein
MSEAQGPNIAEWQAQQQHQEAAGEKSGFGLGNSDSVSTVVDGMKWLFNFHEGAIAAYSNVFEGLVSGSSLVTLFGKSGNMFGIKLLEGLAEYFSGGGGEDMPSEEMDMAHGDDGHHSDDYPHANNEIAHNADGLQDMHDAGDHHGQSFSPGPSPSVGDDHGHELG
>NZ_LK055284.1|WP_006279859.1|896739_897441_-|ATP-binding-cassette-domain-containing-protein
MRNPIISILNLSLSFDDRTVLKDLNFDILKGESLVILGGSGSGKSVLTKTIIGLLAPDSGSVKINSKSKNKFGVLFQNSALFDYVTVWENISFNYKKRFNISKKEAKQLAIEKLNDVGLEESIADMFPIELSGGMKKRVALARAIAHNPEIIILDEPTSGLDPIMSDIVNEIIIKLSRDLNPTIITITHDIHSAFKIADKIAVLYEGEIISHGTVQEIQNTNNEYIKKFIHYI
>NZ_LK055284.1|WP_095742781.1|897433_898216_-|ABC-transporter-permease
MSFFDINSVRIIGRYFINFLLRLGSAFIFFIQSLYHCLVPPYYFSNIARQIIEIGFFSLPIVGLTGVFIGAAIVLQSSLSDPLINQEQIIPKLVTITIIKELGPVLISLIMVGKVGSSVAAEIGTMRITEQIDALTTLNINPFKYLIAPRILASIIVFPILTVCADLIGIFGGCIIAVFEFNHNLNIYIKHTAQFFNTYDFITGLIKATAFGAIISVSSCYYGYHCKEGARGVGVATTSTVVLSSILIILANYMITLIHA
>NZ_LK055284.1|WP_010962967.1|899126_899309_+|50S-ribosomal-protein-L32
MAVPKRKKSKSRRNMHRSHHAIEPKNVVVCSTTGEFMLPHNVAVDGSYKGKRVFIKQQAE
>NZ_LK055284.1|WP_038199264.1|899319_900357_+|phosphate-acyltransferase-PlsX
MLSTVNNNIVIALDAMGGDFAPLSVIHGAGFFLDNLVDPGIKVFFHIYGDKEEVSPLLLKYKKVSNNSEFTHCSDNVLANDKPSFALRHRKDSSMKAAIVAVKEGKAFGVVSSGNTGALMAISRFILGTLPNIYRPAIASICPTKTKSFALLDLGANVDCNADSLFQFALMGSIFAKIALKIDNPEVALLNIGTEEVKGNDSVRGAFELLKNAPGINFKGYIEASEFLEGNIDVIVADGFVGNVMLKTAEATASTFINLIKQEVFNSWIAKMLVGILLKSKLNKALTRFNPKIRSGAMFLGLNGIIIKSHGNSDAISFAHAIKFAVNAISENLNQKIINGVSHIE
>NZ_LK055284.1|WP_010962965.1|900349_901306_+|ketoacyl-ACP-synthase-III
MNKSFILSTGSYLPRKMLSNNEIASIVETSDEWIRQRTGIVQRHIADEGELTSDLAVNAAKSAIEKAKISVDEIDLIIVATTTPDKTFPSCATIVQSKLKCKNAFAFDVQAACSGFIYAVTVADSLIKSNNRIKYALVIGAEIMSRIVDWEDRSTCVLFGDGAGAVVMKSEMGRSGIISTNLYSDGNVDILCTNGGISSTGDSGKICMNGREVFKHAVDKLTASVEETLKCNNLKITDIDWLIPHQANIRIIEAVVKKLDFPIEKVINTVDKHANTSAASIPLALDYAIQESKIKSGNLVLLISIGAGLTWGSVLLHY
>NZ_LK055284.1|WP_080717640.1|901968_902193_-|hypothetical-protein
MFNLKGNSRKRKTSLTNLASSLIMKLKLLYLLSPICRLKGKDYLMYRRLMFNFLQYIDTVCLYKTSSTSRFLSK
>NZ_LK055284.1|WP_038199260.1|902147_903164_-|NAD(P)/FAD-dependent-oxidoreductase
MKTDIVIIGAGPVGIFTAFQAGMLDMRCHIIDVLDQAGGQCTALYPEKPIYDIPGYPVITAQKLIEQLMEQSSPFKPVYHLSQKVEKISNNEGESFTVITNIGTEVKCKAVIVAAGNGMFEPNRPPLSGILEYENKSVFYSVNKISDFQDKTIVIAGGGDSAADWTVELSKVAKKIYVIHRRKEFRCTPETRNKLESLEIDGKIELVVPYQLHELAGGNGQLSAVIVKNIASKEEKEISADFLLPFFGLSMNLGPINNWGIQLEHSRIVVDPATLKTSRDRIYAIGDIAIYSGKLKLILNGFAESAMACYDIYKVIHNSPVNFQYSTSKGIHGKEKLP
>NZ_LK055284.1|WP_010082336.1|903467_904994_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQLIDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKVFVMAKPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPEDIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEADLRIELFPFEQRHDVNYQATGNIPSVVDTQLCKYCNQQTVSSQCLTLGSRYKNTCKLCNRQWILETCAENNVHSWIPVSATCMTSDQNDTIYVLSKADDVINNHNIKINGIDLLPISILKEIGTNKLISLIKEKAEEKFGHDRDTPVITRQRHRNHMKKALEHLQRFNIDNPIELISEDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK

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Crispr_ID: NZ_LK055284_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LK055284_9

951022-951114

Orphan

Consensus_repeat	Method
CCGCTAACAAGTAGCGGGATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LK055284_9

>merge|NZ_LK055284|9|951022-951114|CRISPRCasFinder
CCGCTAACAAGTAGCGGGATGACGAAGTCATGCCACCGCAAACCGTCATACCGCCGCGGTATCTCTTAGCCGCTAACACGTAGCGGGATGACG

>NZ_LK055284|9|9|951022-951114|CRISPRCasFinder
CCGCTAACAAGTAGCGGGATGACG	AAGTCATGCCACCGCAAACCGTCATACCGCCGCGGTATCTCTTAG
CCGCTAACACGTAGCGGGATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LK055284.1\|WP_095742869.1\|954575_955232_-\|CADD-family-putative-folate-metabolism-protein	unknown	unknown	gnl\|CDD\|275114
NZ_LK055284.1\|WP_010962900.1\|955872_956493_-\|3'-5'-exonuclease	unknown	unknown	gnl\|CDD\|223426
NZ_LK055284.1\|WP_010962907.1\|948563_949475_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_LK055284.1\|WP_038199174.1\|952396_952876_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|238127
NZ_LK055284.1\|WP_095742789.1\|952872_954153_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657
NZ_LK055284.1\|WP_038199190.1\|947562_947976_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|272875
NZ_LK055284.1\|WP_010082361.1\|937244_937541_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|290455
NZ_LK055284.1\|WP_010081866.1\|951657_952395_-\|putative-folate-metabolism-gamma-glutamate-ligase	unknown	unknown	gnl\|CDD\|275005
NZ_LK055284.1\|WP_095742790.1\|956778_956961_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010962901.1\|955421_955745_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_LK055284.1\|WP_006280416.1\|942794_943682_+\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NZ_LK055284.1\|WP_081420822.1\|951400_951583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LK055284.1\|WP_010082338.1\|941565_942591_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270260
NZ_LK055284.1\|WP_010082333.1\|945385_947134_-\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|273915
NZ_LK055284.1\|WP_010962909.1\|947111_947570_-\|molecular-chaperone-Hsc20	unknown	unknown	gnl\|CDD\|179914
NZ_LK055284.1\|WP_007548841.1\|954149_954536_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|214902
NZ_LK055284.1\|WP_007548853.1\|947988_948372_-\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_LK055284.1\|WP_010962911.1\|944631_945378_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_LK055284.1\|WP_070356933.1\|949461_950805_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_LK055284.1\|WP_010082361.1\|957804_958101_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|290455

Protein	Function_ID	Function_description	E-value
NZ_LK055284.1\|WP_095742869.1\|954575_955232_-\|CADD-family-putative-folate-metabolism-protein	gnl\|CDD\|275114	TIGR04305, TENA/THI-4_family_protein, putative folate metabolism protein, CADD family. This protein family, related to but outside the family of PqqC proteins involved in PQQ biosynthesis, includes the well-studied Chlamydia protein CADD (Chlamydia protein Associating with Death Domains), which can induce apoptosis in a host cell. Other members of this family occur in Rickettsia and Wolbachia, unrelated in terms of phylogeny (both are alphaproteobacteria) but similar in living intracellularly. Local gene context in these species, although not in Trichodesmium or Nitrosomonas eutropha, suggests a role in folate metabolism, and some species with this protein lack FolE but have other folate synthesis proteins.	5.60178e-133
NZ_LK055284.1\|WP_010962900.1\|955872_956493_-\|3'-5'-exonuclease	gnl\|CDD\|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	2.53e-64
NZ_LK055284.1\|WP_010962907.1\|948563_949475_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	1.08348e-164
NZ_LK055284.1\|WP_038199174.1\|952396_952876_-\|dihydrofolate-reductase	gnl\|CDD\|238127	cd00209, DHFR, Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.	1.14099e-46
NZ_LK055284.1\|WP_095742789.1\|952872_954153_-\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	7.73366e-74
NZ_LK055284.1\|WP_038199190.1\|947562_947976_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	8.33886e-39
NZ_LK055284.1\|WP_010082361.1\|937244_937541_-\|hypothetical-protein	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	4.69679e-05
NZ_LK055284.1\|WP_010081866.1\|951657_952395_-\|putative-folate-metabolism-gamma-glutamate-ligase	gnl\|CDD\|275005	TIGR04132, intra_fol_E_lig, putative folate metabolism gamma-glutamate ligase. This protein family is related to CofE, a gamma-glutamyl ligase of coenzyme F420 biosynthesis. However, it occurs in a different gamma-glutamyl ligase context, polyglutamylated tetrahydrofolate biosynthesis-like regions in two widely separated lineages that both occur as intracellular bacteria - Chlamydia and Wolbachia.	8.96163e-154
NZ_LK055284.1\|WP_010962901.1\|955421_955745_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.7069e-37
NZ_LK055284.1\|WP_006280416.1\|942794_943682_+\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.27576e-159
NZ_LK055284.1\|WP_010082338.1\|941565_942591_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270260	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily. FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.3026e-135
NZ_LK055284.1\|WP_010082333.1\|945385_947134_-\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|273915	TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. [Protein fate, Protein folding and stabilization].	0
NZ_LK055284.1\|WP_010962909.1\|947111_947570_-\|molecular-chaperone-Hsc20	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	2.08523e-12
NZ_LK055284.1\|WP_007548841.1\|954149_954536_-\|dihydroneopterin-aldolase	gnl\|CDD\|214902	smart00905, FolB, Dihydroneopterin aldolase. Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers.	3.93471e-21
NZ_LK055284.1\|WP_007548853.1\|947988_948372_-\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.0436e-93
NZ_LK055284.1\|WP_010962911.1\|944631_945378_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	5.884e-43
NZ_LK055284.1\|WP_070356933.1\|949461_950805_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_LK055284.1\|WP_010082361.1\|957804_958101_+\|hypothetical-protein	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	4.69679e-05

>NZ_LK055284.1|WP_070356933.1|949461_950805_-|DNA-repair-protein-RadA
MKTVYVCQSCGHSTGRWVGKCIACDNWDTIVEEIAVKTGKRSISAPILIKTLSGSEIITPSRFLTGIEELDRVFGGGIVQGASILIGGEPGIGKSTLLLRIAANVVQLSSFECLYVSGEESLEQVSLRAKRLKINEPKIKLLSTVSLTDVVATIKENKSIKFLVIDSIQTMYDSRITSAPGTVTQVRTCAHELTILAKQYGVSLLIVGHITKDGQIAGPKTLEHMVDTVLYFEGENSNQYRILRTIKNRFGPANEIGVFEMSEAGLVPVDNPSSLFLMAHDREVVGSAVFAGIEGSRPILMEVQALIAGTNMATPRRAVVGWDINRLAMIIAVLNARCKMFLHDKEVYLNIAGGLKIQEPSADLAVAASLISSIVNLPLPTSSIICGEVALSGEIRNISHADLRLKEAQKLGFKKAIMPKNGNYSSHDIEIIKLGHVRELREVFNYN
>NZ_LK055284.1|WP_010962907.1|948563_949475_+|signal-recognition-particle-docking-protein-FtsY
MSLFSNLYQGLLKTSSRFSDGVKSIFSGKKKLDQSLLDELEELLISMDIGHKTSKLIIDRLTSIKFDKEVEYNTITQQLMSEIESILNPAVQPLILNKKPHIIMVCGVNGNGKTTTIGKLAYKYKEMGKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQAIKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDDTAPHDVILVLDATTGQNAYSQLEAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEALFNCN
>NZ_LK055284.1|WP_007548853.1|947988_948372_-|Fe-S-cluster-assembly-scaffold-IscU
MSYNEKILDHYENPRNVGSLDKNDPNVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKTFGCGSAIASSSLLTEMIKGRTISDVTQIKNTQIVEELSLPPVKIHCSVLAEDAIKAAIHDYQSKQKN
>NZ_LK055284.1|WP_038199190.1|947562_947976_-|iron-sulfur-cluster-assembly-accessory-protein
MGEYQEVGGGETVKKNKKLITITAEAVERIRYLLDQKKHTNLEKPEEAIGIRVLIKQKGCSGLKYDIEYAYDTRPLESVIEENCSDGQKVKVLIDPKSVMFILGSEMDYVEEKFSSGFVFKNPNEKGKCGCGESFHV
>NZ_LK055284.1|WP_010962909.1|947111_947570_-|molecular-chaperone-Hsc20
MSSNYFALFEIEPAFNISFDELEKKYIELSRTDINERQSQNMENINRAYQILKSPLKRAEHLLDFFNVKSQKDHLNSEILSESMEIREYLLDCDDLQFASRMIDEKIKGCIKNLINTFAVKNFDRAATQVLRLKYLYKSFEEMKKNATNSNF
>NZ_LK055284.1|WP_010082333.1|945385_947134_-|Fe-S-protein-assembly-chaperone-HscA
MQPIQISEPNSNEVVFGIDLGTTNSLIAMVNKAGNVEIFKDEQGRELLPSIISCENNTLKTGYDVGSNAIHSIKRLMGKSVKDLNKMGVYFEIDNESEKVIRVKCSEEKYLTPVEISAEILKALCERVKKSKGLEVKKAVITVPAYFDDSARNATKYAAKLAGIEVLRLVNEPTAAALSYSIEKNNNSGIYAVYDLGGGTFDISILKLHQGVFQVLAVGGDTKLGGDDFDHLLSSIVIDKYREKTAKQLNSLLIESRSVKEYLSNHTIGIFEFNVNGKPFECEITREEFEQAISSLVNKTINIVTRTISDIDLKIDDIKGVILVGGATRTPLVQNSLVKLFGNKVLNDVDPDKAVAIGAALQAHDLTSSSKDRNILLDVLPLSLGIETMGGIVEKIIPRNTPLPVSETKEFTTYIDGQTAMKIHVCQGEREMIEDNKSLAQFELKGIPPLPAGSARVEIEFTVNVDGILTVTAREKTTGIEQTVKVNSSFGLSEADVQNMVNQSINSFDEDMKARSLAGAKINGNKLIHLVENNNNLSTDQKLKNLLQNAKNALQGNDLNEINNTIAELENSSLELCELTNR
>NZ_LK055284.1|WP_010962911.1|944631_945378_+|signal-peptidase-I
MEELSKNWVIRTGRFLSSLFFLLLIALSIRSFLFEPFHIPSGSMKSTLLEGDYIFTSKYSYGYSKHSFPFSPNIFSGRIFYTPPKRGDIVVFKPTRNDSIRFVKRVIGTPGDKVQMIEGELYLNDQKVERRQIESFFDYESNRNIPRYIETLLSGKEHEILVDDISNKLSYNTPVYYVPNDQFFVMGDNRNNSLDSRFPEVGFVPMENIIGRVSIVGLSFKLGKVDWLPFNFRLPVALRLNRVLHKVV
>NZ_LK055284.1|WP_006280416.1|942794_943682_+|aspartate-carbamoyltransferase-catalytic-subunit
MNKRRNLLNISDLTVDDVENITKLANQYLKKEVANSHILENKTVINLFFEDSTRTLASFEIAAKSLGANVVTLPIRSSSINKGEDLKDMIKTLNAMNPDYIIIRHKSSGIINTLAKYVNCSLINAGDGSSEHPTQALADYLVISNHKKQIKDLKVVICGDILHSRVARSNIRLLKMFGAEINLVAPPTLICKHFPEVDSVHYSLIEGIKDADVIMLLRLQKERMNNSSSEKEYFYLYGLDSQKLSYAKPDAIVMHPGPINRGIEISSDVADCVILQQVEFGLAIRKAVLHYYRPC
>NZ_LK055284.1|WP_010082338.1|941565_942591_+|Fe(3+)-ABC-transporter-substrate-binding-protein
MKKAFIFTSLIAIILIVITYLYRNDGTNDSQVVNVYSSRKEELVRTLFDEFTKNTGIKVRYIIDDYSQLLSRMENGGEADLFLTADAINLILAKKRGLLSQVDSEVLKSVIPARFRDSEDYWFGLTKRARILVYNKESVDPKDLSTYEDLANEKWKGKILVRSSTSPYNRSLIAFMIANNGFEKTKEWVSGIVSNMARKPSGGDTDQIYAVAAGEGDVAIVNSYYFARILSSENKKNVADKLGAFFPNRNDHGVMVNISGAAVTKNAKNRENAIVLLEFLVSKQAQELYAKKNQEYPIIEGVETSDILKSWGNYSQSDLPLSELEKHLFEAVMIADECKWK
>NZ_LK055284.1|WP_010082361.1|937244_937541_-|hypothetical-protein
MPQKMRVSNCHEYNKFLQERGSIFCYINDAIENWYENCPKMQGGNYIYSDKVVILVHIIVSFFRIGLRQTVGFIKGYLQQIGRDLQLFTSIKRNLILR
>NZ_LK055284.1|WP_081420822.1|951400_951583_-|hypothetical-protein
MTPFASALIMIVKLLYLLSPICRLKGKDYLMYRRLMFNFLQYIDTVCLYKTSSTSRFLSK
>NZ_LK055284.1|WP_010081866.1|951657_952395_-|putative-folate-metabolism-gamma-glutamate-ligase
MHVEAIYTHRIECGEVLEQVLDRYVSELLREEVVLAITSKIISICQKQVVCKTACSKEELIKREADAIVDVDHNSYGIYLTIKDNILIPSAGIDESNGNEMYILYPKDVQKTALSIWNYLKTKHCIKHLGILITDSNITPMRLGVTGVALGWCGFEPFYSYIGKPDLYDQPLQVTQVNLLDALATSAVLVMGEGAEQTPMAIISGAPKIHFLTRPPTTEEEKSVKISMEEDLYSPLLMRARWLKS
>NZ_LK055284.1|WP_038199174.1|952396_952876_-|dihydrofolate-reductase
MIVIGIMAVDPKGVIGINNGLPWHYPSELDHFRQVTEKQVIVMGRKTFETMPQDILGNRIPVVFSRDKLNSCFNRGVKCTIISSMQEFLSIQSNSKVFMIGGAQIAHLFLEYDLISEFIITEIHKPYKGDVYFNLTLLDGWHKTILTKTKDYTICKLTR
>NZ_LK055284.1|WP_095742789.1|952872_954153_-|dihydropteroate-synthase
MIYISVGSNIGNRFSHLQKAAQLLQERYFKNLKSSIILETKAILPNDASPGWDRPFLNMVVYGSCSSSPEELLKGLKQIECDIGRLQVYEKWAPRIIDLDILLWDDLTLDTPYLKIPHPELINRPFLLHLMTMLNPMAVVNKTFGTVNPNIKDCFLRSFTLSPELVGIVNITPDSFSDGGLYYDADQATKQALRLLSDGASIVELGAQSTRPGSSIQTPKAEYARLKPVLDNLNQYMKVGDIKVSIDSFWPDVILNVLEHYNIAWVNDQKGDLDDNTLKAIASSGCSIVIMHSLSIPPHSDNIIPSDIDPIDTINNWAERNINRLLALGFDQSSIIIDPGIGFGKSMYQNIQILRSIETLQNFGCKVLVGHSRKSFISSFSTEPVFNRDLETIATSSVLHNKVDFLRVHNVRDHMRFFVAQAALQG
>NZ_LK055284.1|WP_007548841.1|954149_954536_-|dihydroneopterin-aldolase
MSACNLLISDLRLWVHLGYSAEEKYHSQLVSVNIDFTFKSPPLGLTTDRLEDTICYLEVVQSIQSLVQSKQFNLIEHLTHDIYRTINNLVMQKKLIISSIGVTIHKVAPPVPSVHGGVFFTYRNALQE
>NZ_LK055284.1|WP_095742869.1|954575_955232_-|CADD-family-putative-folate-metabolism-protein
MEFTKSLNNKLDELHLLNHPFYQSWNTGSLSLQALQTYAKEYYHHVAAFPRYISGIHFLCPDLKMRQVLLGNLIEEEQGDENHPELWKRFAEGLGVARSDLRESAQIKETQELIDGYFDIVRSGFAAGLGALYAYERQTPEVSKSKIEGLKKHYSISDERSLQFFTVHMHADEWHSEECANLIEDLDEKEQDKVMQGAQKGARLLWGFLDRMMNASVC
>NZ_LK055284.1|WP_010962901.1|955421_955745_-|thioredoxin
MSDDITPVNDQNFKSEVTDYKGFVLVDFWAEWCGPCKSLMPRIEQLAKDRKGKIKICKFDIDEGTEVPSKYGVQSIPTLIIFQDGKEIARKIGATNDLLSWVDSEIS
>NZ_LK055284.1|WP_010962900.1|955872_956493_-|3'-5'-exonuclease
MGIFLYKDDLPASSIPDDIRSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQLKNDYTAPNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIELDLMGWENVDIFNHQM
>NZ_LK055284.1|WP_095742790.1|956778_956961_+|hypothetical-protein
MTNSASSLIMIVKLLYLLSPICRLKGKDYLMYRPLMFNFLQYIDTVCLYKTSSTSRFLSK
>NZ_LK055284.1|WP_010082361.1|957804_958101_+|hypothetical-protein
MPQKMRVSNCHEYNKFLQERGSIFCYINDAIENWYENCPKMQGGNYIYSDKVVILVHIIVSFFRIGLRQTVGFIKGYLQQIGRDLQLFTSIKRNLILR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LK055284_5	5.1\|538844\|51\|NZ_LK055284\|CRISPRCasFinder	538844-538894	51	NZ_LK055284.1	378214-378264	1	0.98
NZ_LK055284_8	8.1\|894518\|51\|NZ_LK055284\|CRISPRCasFinder	894518-894568	51	NZ_LK055284.1	378214-378264	1	0.98
NZ_LK055284_2	2.1\|322510\|49\|NZ_LK055284\|CRISPRCasFinder	322510-322558	49	NZ_LK055284.1	425704-425752	2	0.959

1. spacer 5.1|538844|51|NZ_LK055284|CRISPRCasFinder matches to position: 378214-378264, mismatch: 1, identity: 0.98

tggtatgacggttaagtaattcgtcatcccgctacttgttagcgggatcta	CRISPR spacer
tggtatgacagttaagtaattcgtcatcccgctacttgttagcgggatcta	Protospacer
*********.*****************************************

2. spacer 8.1|894518|51|NZ_LK055284|CRISPRCasFinder matches to position: 378214-378264, mismatch: 1, identity: 0.98

tagatcccgctaacaagtagcgggatgacgaattacttaaccgtcatacca	CRISPR spacer
tagatcccgctaacaagtagcgggatgacgaattacttaactgtcatacca	Protospacer
*****************************************.*********

3. spacer 2.1|322510|49|NZ_LK055284|CRISPRCasFinder matches to position: 425704-425752, mismatch: 2, identity: 0.959

cgcagtggcatgacgataagctcgtcatcccgctacttgttagcggcta	CRISPR spacer
cgcggtggcatgacgataagctcgtcatcccgctgcttgttagcggcta	Protospacer
***.******************************.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

38639 : 99908

Catovirus(16.67%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010962323.1\|38639_38993_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_006279726.1\|39034_40297_-	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_038198529.1\|40302_41937_-	ribonuclease J	NA	NA	NA	NA
WP_012673045.1\|42146_43265_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	2.4e-29	33.2
WP_095742611.1\|43488_44436_-	hypothetical protein	NA	NA	NA	NA
WP_095742612.1\|44650_45061_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_095742613.1\|45057_45960_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.8e-36	35.1
WP_010962335.1\|49816_50014_-	hypothetical protein	NA	NA	NA	NA
WP_010082570.1\|50081_50714_+	hypothetical protein	NA	NA	NA	NA
WP_015588782.1\|50774_52313_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	7.9e-55	39.0
WP_095742614.1\|53007_54195_+	MFS transporter	NA	NA	NA	NA
WP_010082582.1\|54255_54561_+	integration host factor subunit alpha	NA	NA	NA	NA
WP_006279880.1\|54560_54887_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_006279879.1\|54932_55529_+	M23 family metallopeptidase	A0A7K9	Microcystis_virus	2.8e-08	35.5
WP_010962340.1\|55541_58058_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	2.1e-158	37.8
WP_010962341.1\|58186_58822_+	membrane protein	NA	NA	NA	NA
WP_010082072.1\|59294_59459_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_081420798.1\|59616_59964_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-08	39.4
WP_010082069.1\|60035_60329_-\|transposase	transposase	NA	NA	NA	NA
WP_010082233.1\|60483_60807_+	HNH endonuclease	NA	NA	NA	NA
WP_010082232.1\|60803_61214_+	hypothetical protein	NA	NA	NA	NA
WP_010082231.1\|61221_62244_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_010082230.1\|62318_62948_-	hypothetical protein	NA	NA	NA	NA
WP_010082229.1\|63516_64665_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_095742615.1\|65107_66070_+\|transposase	IS481-like element ISWpi4 family transposase	NA	NA	NA	NA
WP_070356754.1\|66072_66621_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010962412.1\|66620_67232_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_010962411.1\|67377_67677_+	ETC complex I subunit	NA	NA	NA	NA
WP_010962410.1\|67978_68290_-	hypothetical protein	NA	NA	NA	NA
WP_010081849.1\|68286_69231_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_010962408.1\|69449_70697_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.6e-50	31.6
WP_095742848.1\|70724_71507_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_010962406.1\|71639_72878_-	cell division protein FtsA	NA	NA	NA	NA
WP_010962405.1\|73016_73556_+	peptide deformylase	E3SLL2	Synechococcus_phage	4.0e-22	41.8
WP_010082207.1\|73545_74367_+	uracil-DNA glycosylase	A0A127AW33	Bacillus_phage	1.5e-12	30.8
WP_081600756.1\|74402_74618_+	hypothetical protein	NA	NA	NA	NA
WP_007548280.1\|75029_75236_+	hypothetical protein	NA	NA	NA	NA
WP_006279675.1\|75302_75515_+	hypothetical protein	NA	NA	NA	NA
WP_095742849.1\|75520_77569_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_095742616.1\|77552_78578_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_010962401.1\|78570_79566_+	porphobilinogen synthase	NA	NA	NA	NA
WP_095742617.1\|79712_80471_+	phosphatidylglycerophosphatase	NA	NA	NA	NA
WP_010082308.1\|80515_81355_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_095742618.1\|81358_83476_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_010082305.1\|83459_85277_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_010082304.1\|85602_86376_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-27	34.9
WP_006013840.1\|86504_86672_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_010082302.1\|86838_87495_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_010082301.1\|87585_88242_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_010082300.1\|88234_89608_+\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	2.0e-49	31.1
WP_010962395.1\|89614_90034_+	DedA family protein	NA	NA	NA	NA
WP_095742619.1\|90125_92969_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010962393.1\|93185_94610_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_010082183.1\|95793_96261_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_038199503.1\|96305_96794_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_006279354.1\|96794_97622_-	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_010962391.1\|97669_98329_-	TenA family transcriptional regulator	NA	NA	NA	NA
WP_051955865.1\|98373_98997_-	TenA family transcriptional regulator	NA	NA	NA	NA
WP_095742620.1\|99076_99908_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

104314 : 153970

Bacillus_phage(18.18%)

head,integrase,tRNA,tail,transposase

attL 135536:135580|attR 157973:158017

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010082249.1\|104314_105358_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	6.4e-32	36.4
WP_095742621.1\|105504_107235_+	hypothetical protein	NA	NA	NA	NA
WP_010082169.1\|107416_108013_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.4e-21	31.1
WP_010962383.1\|108070_108661_+	CvpA family protein	NA	NA	NA	NA
WP_006279412.1\|109146_109584_+	hypothetical protein	NA	NA	NA	NA
WP_006279413.1\|109784_110003_+	hypothetical protein	NA	NA	NA	NA
WP_006279414.1\|110004_110277_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_095742622.1\|110375_110597_+	hypothetical protein	NA	NA	NA	NA
WP_010962380.1\|110577_110889_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006279415.1\|110972_111194_+	hypothetical protein	NA	NA	NA	NA
WP_007550684.1\|111184_111460_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006279515.1\|111631_111910_+	YggT family protein	NA	NA	NA	NA
WP_010962378.1\|111910_114025_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.8e-73	42.5
WP_095742623.1\|114180_114726_+	hypothetical protein	NA	NA	NA	NA
WP_070356736.1\|114923_115544_+	hypothetical protein	NA	NA	NA	NA
WP_070356735.1\|115569_116850_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_010962373.1\|117028_118357_+\|transposase	IS4-like element ISWen1 family transposase	NA	NA	NA	NA
WP_080717620.1\|118522_118687_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080717636.1\|118925_119279_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-08	42.5
WP_010962372.1\|119911_120169_-	hypothetical protein	NA	NA	NA	NA
WP_095742624.1\|120262_122650_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	7.3e-108	34.3
WP_010082575.1\|123459_124068_-	SCO family protein	NA	NA	NA	NA
WP_010082574.1\|124112_124808_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.0e-38	37.9
WP_095742625.1\|124825_125476_-	Tim44 domain-containing protein	NA	NA	NA	NA
WP_006279761.1\|125640_126144_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_095742626.1\|126158_128744_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_095742627.1\|128878_132019_+	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_095742628.1\|133570_133915_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_010082606.1\|133931_134246_-	hypothetical protein	NA	NA	NA	NA
WP_010082605.1\|134345_135452_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	4.2e-42	33.9
135536:135580	attL	NA	NA	NA	NA
WP_010962363.1\|136310_137069_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_010082603.1\|137049_138003_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_010082602.1\|138082_138868_-	hypothetical protein	NA	NA	NA	NA
WP_010082601.1\|139061_139436_-	ferredoxin family protein	NA	NA	NA	NA
WP_015588848.1\|140659_141388_-	triosephosphate isomerase	NA	NA	NA	NA
WP_038228092.1\|141563_142376_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_095742629.1\|142492_143986_+	IMP dehydrogenase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	9.7e-42	41.2
WP_080717647.1\|144776_144947_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
WP_010082588.1\|145194_146700_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_006280349.1\|146716_147502_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010962355.1\|147735_148551_+	hypothetical protein	NA	NA	NA	NA
WP_010082576.1\|148613_149786_+	porin	NA	NA	NA	NA
WP_010082069.1\|149948_150242_+\|transposase	transposase	NA	NA	NA	NA
WP_081420798.1\|150313_150661_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-08	39.4
WP_010082072.1\|150818_150983_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_070356729.1\|151489_152275_-	hypothetical protein	NA	NA	NA	NA
WP_010962351.1\|152340_152730_-	hypothetical protein	NA	NA	NA	NA
WP_010962350.1\|152704_153115_-	hypothetical protein	NA	NA	NA	NA
WP_095742630.1\|153421_153970_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
157973:158017	attR	NA	NA	NA	NA

DBSCAN-SWA_3

162875 : 363673

174

Wolbachia_phage(52.94%)

head,integrase,protease,tail,tRNA,capsid,plate,transposase,terminase

attL 187022:187068|attR 232428:232471

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010082069.1\|162875_163169_+\|transposase	transposase	NA	NA	NA	NA
WP_081420798.1\|163240_163588_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-08	39.4
WP_010082072.1\|163745_163910_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_095742851.1\|164001_165405_-	nitronate monooxygenase	NA	NA	NA	NA
WP_095742632.1\|165756_166344_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_010962422.1\|166639_167818_-	ribonuclease D	A0A0M5KJQ5	Mollivirus	1.4e-06	29.9
WP_095742633.1\|168702_171198_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	4.9e-30	22.7
WP_010082283.1\|171472_172279_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_006279522.1\|172464_172647_-	hypothetical protein	NA	NA	NA	NA
WP_010082284.1\|173044_173752_+	membrane protein	A0A0R6PEZ3	Moraxella_phage	2.5e-27	35.6
WP_010962427.1\|173784_175347_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_006280151.1\|176234_178019_-	ribonucleoside-diphosphate reductase subunit alpha	A0A0K1LMZ5	Caulobacter_phage	1.3e-202	59.9
WP_010082287.1\|178077_179154_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_095742634.1\|182513_182777_-	hypothetical protein	NA	NA	NA	NA
WP_006279896.1\|182862_183000_-	hypothetical protein	NA	NA	NA	NA
WP_006279898.1\|183205_183340_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_095742852.1\|183447_184536_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_010962432.1\|184637_186065_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_006279902.1\|186077_186422_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_010962434.1\|186809_187028_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
187022:187068	attL	NA	NA	NA	NA
WP_080717647.1\|187204_187375_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
187022:187068	attL	NA	NA	NA	NA
WP_006279391.1\|188311_189241_-	permease	NA	NA	NA	NA
WP_006279391.1\|188311_189241_-	permease	NA	NA	NA	NA
188131:188177	attR	NA	NA	NA	NA
WP_010082160.1\|189704_190868_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	1.6e-20	26.1
188131:188177	attR	NA	NA	NA	NA
WP_007548640.1\|190895_191975_-	peptide chain release factor 1	NA	NA	NA	NA
WP_010962460.1\|192073_192667_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_010962459.1\|192671_193583_+	acetylglutamate kinase	NA	NA	NA	NA
WP_006279458.1\|193997_194459_+	dUTP diphosphatase	V5L6Y7	Insectomime_virus	7.2e-36	55.1
WP_095742853.1\|194636_195176_+	hypothetical protein	NA	NA	NA	NA
WP_095742635.1\|195505_196126_-\|transposase	transposase	NA	NA	NA	NA
WP_007548762.1\|196109_196439_-\|transposase	transposase	NA	NA	NA	NA
WP_007549265.1\|196611_197094_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_006279647.1\|197093_197522_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-13	35.0
WP_095742636.1\|197499_199209_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_006279648.1\|199343_199859_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_010082185.1\|199865_200741_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.0e-43	40.0
WP_095742637.1\|200922_203154_-	hypothetical protein	Q9JML0	Wolbachia_phage	2.0e-14	34.9
WP_010962452.1\|203327_205454_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_095742638.1\|205622_206864_+	hypothetical protein	NA	NA	NA	NA
WP_022626228.1\|206986_208312_+	dihydroorotase	NA	NA	NA	NA
WP_095742639.1\|208510_209695_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_095742640.1\|209698_210295_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_010962447.1\|210400_212230_+	translational GTPase TypA	E4ZFJ7	Streptococcus_phage	8.0e-22	40.8
WP_010962446.1\|212292_212736_+	hypothetical protein	A0A1B2LRR6	Wolbachia_phage	1.1e-28	79.3
WP_095742641.1\|213507_216069_+	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	1.1e-122	34.0
WP_095742642.1\|216096_220821_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_010082258.1\|220825_221122_+	hypothetical protein	NA	NA	NA	NA
WP_010082259.1\|221093_222476_+	PleD family two-component system response regulator	G3MA91	Bacillus_virus	5.1e-21	34.6
WP_010082260.1\|222934_223657_-	DNA repair protein RecO	NA	NA	NA	NA
WP_038199734.1\|223863_224895_-	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	1.6e-184	92.7
WP_022626225.1\|225067_225688_+	hypothetical protein	NA	NA	NA	NA
WP_006279908.1\|226385_226724_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_010082277.1\|226855_227845_+	ribonucleotide-diphosphate reductase subunit beta	A0A1B1IW95	uncultured_Mediterranean_phage	1.5e-102	54.5
WP_095742643.1\|227973_229104_+	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_010082278.1\|229103_229679_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_010082279.1\|229673_230297_-	AAA family ATPase	NA	NA	NA	NA
WP_010082280.1\|230577_231288_+	hypothetical protein	NA	NA	NA	NA
WP_080717647.1\|232120_232291_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
WP_038199773.1\|232547_233879_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_010962373.1\|233997_235326_+\|transposase	IS4-like element ISWen1 family transposase	NA	NA	NA	NA
WP_010962676.1\|236360_237533_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_006280246.1\|237808_238987_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_010082292.1\|239075_240359_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_010082293.1\|240372_240639_+	DUF2312 domain-containing protein	B0VK10	Azospirillum_phage	1.7e-10	40.7
WP_010082294.1\|240631_241207_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_010082295.1\|241190_242069_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.6e-39	40.0
WP_095742644.1\|242592_242757_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080717636.1\|242995_243349_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-08	42.5
WP_010082297.1\|243914_244256_+	hypothetical protein	A0A1B2LRQ3	Wolbachia_phage	3.8e-10	52.2
WP_010082298.1\|244295_244937_+	fructose-6-phosphate aldolase	M1PR54	Cyanophage	2.9e-43	45.3
WP_095742620.1\|245270_246103_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010082266.1\|248885_249425_-	hypothetical protein	D9I601	Acinetobacter_virus	2.4e-22	36.5
WP_095742645.1\|249425_250322_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.1e-132	80.1
WP_010082268.1\|250435_251356_+	helix-turn-helix domain-containing protein	A0A1B2LRR8	Wolbachia_phage	5.0e-81	59.3
WP_010082269.1\|251526_252183_+	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	1.6e-68	60.9
WP_010082270.1\|252299_253556_+	hypothetical protein	A0A1B2LRQ6	Wolbachia_phage	2.4e-166	78.9
WP_010082271.1\|253644_254565_+	helix-turn-helix domain-containing protein	E9P5Z7	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	2.3e-86	59.5
WP_095742620.1\|255822_256655_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010082202.1\|256889_257795_+	DMT family transporter	NA	NA	NA	NA
WP_010082204.1\|259375_260290_-	hypothetical protein	A0A1B2LRS3	Wolbachia_phage	1.1e-152	88.1
WP_095742646.1\|260288_260810_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	3.5e-87	95.4
WP_019236585.1\|260810_261020_-	hypothetical protein	A0A1B2LRU2	Wolbachia_phage	3.2e-28	95.7
WP_095742854.1\|261074_261596_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_095742647.1\|261652_262597_-\|tail	phage tail protein	A0A1B2LRT8	Wolbachia_phage	1.7e-137	76.7
WP_010081876.1\|262597_262807_-\|tail	tail protein	A0A1B2LRT9	Wolbachia_phage	8.2e-24	73.9
WP_022626303.1\|262803_263151_-\|tail	phage tail protein	A0A1B2LRV9	Wolbachia_phage	4.5e-43	71.9
WP_095742648.1\|263150_265433_-\|tail	phage tail tape measure protein	E9P5Y8	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	2.7e-237	64.8
WP_010082215.1\|265882_266164_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_007303020.1\|266147_266348_-	hypothetical protein	NA	NA	NA	NA
WP_010082216.1\|266409_266907_-\|tail	phage major tail tube protein	A0A1B2LRS4	Wolbachia_phage	4.0e-85	92.3
WP_010082217.1\|266918_268103_-	hypothetical protein	A0A1B2LRR3	Wolbachia_phage	2.3e-203	89.1
WP_095742649.1\|268099_268675_-	hypothetical protein	Q75QL3	Wolbachia_phage	1.4e-60	69.9
WP_010082219.1\|268681_270139_-	hypothetical protein	A0A1B2LRR1	Wolbachia_phage	3.8e-200	85.3
WP_010082220.1\|270135_270330_-	hypothetical protein	A0A1B2LRW5	Wolbachia_phage	1.3e-23	81.2
WP_010082221.1\|270334_271528_-	hypothetical protein	A0A1B2LRR4	Wolbachia_phage	2.0e-207	90.5
WP_095742650.1\|271533_273459_-	DUF4815 domain-containing protein	A0A1B2LRP5	Wolbachia_phage	0.0e+00	96.9
WP_010082176.1\|273475_274159_-	hypothetical protein	A0A1B2LRU4	Wolbachia_phage	2.7e-108	86.8
WP_095742651.1\|276304_277543_-	AAA family ATPase	A0A1B2LRQ9	Wolbachia_phage	3.7e-127	59.5
WP_010082125.1\|277539_278040_-	hypothetical protein	A0A1B2LRU0	Wolbachia_phage	3.8e-67	78.4
WP_095742652.1\|278077_278866_-	AAA family ATPase	A0A1B2LRS1	Wolbachia_phage	2.8e-125	84.5
WP_010082113.1\|278877_279699_-	ATP-binding protein	E9P631	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.3e-133	86.1
WP_038228276.1\|280872_281322_+	Holliday junction DNA helicase	Q9JMN0	Wolbachia_phage	7.9e-80	96.6
WP_095742855.1\|282673_283153_+	hypothetical protein	Q9JMM9	Wolbachia_phage	3.3e-76	95.6
WP_010082188.1\|283156_284638_+	hypothetical protein	F8QZT7	Wolbachia_phage	2.7e-217	84.5
WP_010082189.1\|284634_286461_+\|terminase	phage terminase large subunit family protein	Q9JMM7	Wolbachia_phage	0.0e+00	95.9
WP_010082190.1\|286453_286687_+	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	6.2e-28	86.3
WP_095742653.1\|286727_286988_+	hypothetical protein	NA	NA	NA	NA
WP_010962706.1\|286978_287260_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1C9M026	Mycobacterium_phage	3.0e-05	51.4
WP_006280203.1\|288776_289838_+	S49 family peptidase	Q75QM8	Wolbachia_phage	1.6e-163	87.1
WP_010082142.1\|289912_290284_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	1.0e-53	89.4
WP_006280204.1\|290321_291326_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	3.3e-187	94.9
WP_007550857.1\|291423_291729_+	hypothetical protein	Q9JMM1	Wolbachia_phage	3.4e-42	78.2
WP_006280676.1\|291730_292252_+\|tail	tail protein	A0A1B2LRS9	Wolbachia_phage	1.7e-57	67.1
WP_010962732.1\|292248_292725_+	hypothetical protein	Q75QM3	Wolbachia_phage	3.2e-63	79.1
WP_012673195.1\|292711_293176_+\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	9.0e-71	87.7
WP_010082105.1\|293183_293438_+	hypothetical protein	Q75QM1	Wolbachia_phage	1.4e-12	69.6
WP_007552425.1\|293440_293776_+\|plate	baseplate assembly protein W	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	8.3e-42	80.2
WP_012673194.1\|293778_294570_+\|plate	baseplate assembly protein J	Q9JML6	Wolbachia_phage	1.5e-113	78.2
WP_095742654.1\|295896_296631_+	ankyrin repeat domain-containing protein	A0A1B2LRT4	Wolbachia_phage	1.8e-81	83.7
WP_010082245.1\|297128_297569_+	DUF2924 domain-containing protein	Q9JML2	Wolbachia_phage	5.0e-63	89.9
WP_010082246.1\|297562_299032_+	recombinase family protein	Q9JML1	Wolbachia_phage	3.7e-243	85.6
WP_095742655.1\|303169_305695_+	hypothetical protein	A0A2H4X2Q6	Flamingopox_virus	1.1e-05	24.6
WP_095742656.1\|306580_307066_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015589128.1\|308119_309031_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	9.2e-128	81.4
WP_081420805.1\|309986_310346_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.9e-08	38.1
WP_080717614.1\|310499_310664_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_010082658.1\|311361_312126_+	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_095742657.1\|312141_313692_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	6.0e-10	34.0
WP_010081859.1\|313693_314581_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_010082655.1\|314756_315194_+	ribonuclease HI	J9Q745	Salmonella_phage	5.9e-32	44.1
WP_010962501.1\|315186_318309_+	DUF3971 domain-containing protein	NA	NA	NA	NA
WP_095742658.1\|318871_320521_-	chaperonin GroEL	A0A219YK78	uncultured_virus	1.8e-129	48.3
WP_010081842.1\|320621_320912_-	co-chaperone GroES	A0A221S331	uncultured_virus	8.0e-09	35.6
WP_095742659.1\|321089_321896_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_010962506.1\|322774_324514_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.6e-64	31.6
WP_010962507.1\|324574_324808_-	hypothetical protein	NA	NA	NA	NA
WP_010962508.1\|324804_325008_-	hypothetical protein	NA	NA	NA	NA
WP_080717600.1\|325382_325583_-	hypothetical protein	NA	NA	NA	NA
WP_038228111.1\|325579_326881_-	membrane protein	NA	NA	NA	NA
WP_095742660.1\|326873_328169_-	sodium:proton antiporter	NA	NA	NA	NA
WP_095742661.1\|328458_330912_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.3e-200	47.6
WP_095742662.1\|330927_332205_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.0e-108	51.6
WP_095742663.1\|332204_332831_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	4.3e-60	61.4
WP_010962514.1\|332842_334177_-	trigger factor	NA	NA	NA	NA
WP_010962515.1\|334557_335154_+	BON domain-containing protein	NA	NA	NA	NA
WP_038198626.1\|335214_336144_+	glutathione synthase	NA	NA	NA	NA
WP_007549072.1\|336128_337160_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_006279962.1\|337229_337622_+	hypothetical protein	NA	NA	NA	NA
WP_010962518.1\|337627_339001_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	4.3e-44	28.4
WP_095742664.1\|339076_339796_-\|transposase	transposase	Q75QL1	Wolbachia_phage	8.3e-23	34.0
WP_095742620.1\|340474_341307_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_095742665.1\|341799_343206_+	hypothetical protein	NA	NA	NA	NA
WP_095742856.1\|343241_343487_-	hypothetical protein	NA	NA	NA	NA
WP_010082361.1\|343454_343751_+	hypothetical protein	NA	NA	NA	NA
WP_015589109.1\|344669_345173_+	hypothetical protein	NA	NA	NA	NA
WP_095742666.1\|345329_345983_-\|transposase	transposase	NA	NA	NA	NA
WP_007552972.1\|346020_346290_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_095742667.1\|346623_347031_-\|transposase	transposase	NA	NA	NA	NA
WP_010082383.1\|347050_347251_-	hypothetical protein	NA	NA	NA	NA
WP_095742668.1\|347234_347564_-\|transposase	transposase	NA	NA	NA	NA
WP_038198671.1\|347939_349283_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_095742669.1\|349629_352308_+	hypothetical protein	NA	NA	NA	NA
WP_010082554.1\|352299_352896_-	septum formation protein Maf	NA	NA	NA	NA
WP_007550159.1\|352873_353137_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_095742670.1\|353249_355727_-	hypothetical protein	NA	NA	NA	NA
WP_070357042.1\|356810_358088_-	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	3.5e-56	32.3
WP_010082561.1\|358268_359864_+	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	1.9e-99	57.8
WP_083250453.1\|359915_360332_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010962525.1\|360340_361051_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_006280267.1\|361186_362017_+	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_006279631.1\|362066_362195_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_010962526.1\|362244_362559_+	hypothetical protein	NA	NA	NA	NA
WP_010082069.1\|362638_362932_+\|transposase	transposase	NA	NA	NA	NA
WP_081420798.1\|363003_363351_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-08	39.4
WP_010082072.1\|363508_363673_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1

DBSCAN-SWA_4

521798 : 556227

uncultured_Mediterranean_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010082135.1\|521798_523025_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_010962643.1\|523414_524884_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_081420811.1\|527985_528315_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	6.9e-09	42.5
WP_080717620.1\|528553_528718_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_022626263.1\|529407_530271_-	C26 family cysteine hydrolase domain-containing family	NA	NA	NA	NA
WP_006279325.1\|530641_531148_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.3e-30	47.1
WP_006279326.1\|531216_531408_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_010082212.1\|531424_532051_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_095742703.1\|532040_532736_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.7e-20	47.9
WP_080717616.1\|532848_532935_+	hypothetical protein	NA	NA	NA	NA
WP_010962658.1\|533011_533569_-	ribosome recycling factor	NA	NA	NA	NA
WP_022626262.1\|533576_534320_-	UMP kinase	NA	NA	NA	NA
WP_070356839.1\|534330_535191_-	elongation factor Ts	NA	NA	NA	NA
WP_010962661.1\|535171_536020_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_010081840.1\|536425_536797_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.1e-13	45.7
WP_010962662.1\|536877_538698_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1GV45	Paramecium_bursaria_Chlorella_virus	2.4e-95	37.2
WP_010082016.1\|539005_539449_+	hypothetical protein	A0A1B2LRR6	Wolbachia_phage	1.2e-27	75.6
WP_010082015.1\|539869_541417_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-131	50.1
WP_095742704.1\|541413_542211_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	5.2e-58	60.7
WP_010082163.1\|542612_543500_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_010962666.1\|543490_544369_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_010962667.1\|545324_546497_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_095742705.1\|546535_549115_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_095742620.1\|549115_549948_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_095742706.1\|549968_550931_-	hypothetical protein	NA	NA	NA	NA
WP_095742707.1\|551180_553841_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_095742860.1\|553850_554927_-	hypothetical protein	NA	NA	NA	NA
WP_095742620.1\|555206_556038_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_080717620.1\|556062_556227_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

560237 : 692201

113

Wolbachia_phage(47.92%)

head,protease,tail,capsid,tRNA,plate,transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095742709.1\|560237_561518_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_038198925.1\|561589_562243_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	5.4e-37	44.3
WP_095742710.1\|562249_562744_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_038198926.1\|562753_564295_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_010962742.1\|564291_564852_-	ATP synthase F1 subunit delta	NA	NA	NA	NA
WP_012673177.1\|564893_565244_-	hypothetical protein	NA	NA	NA	NA
WP_007550873.1\|565267_565696_-	50S ribosomal protein L17	NA	NA	NA	NA
WP_095742711.1\|565703_566771_-	DNA-directed RNA polymerase subunit alpha	NA	NA	NA	NA
WP_015589137.1\|566792_567179_-	30S ribosomal protein S11	NA	NA	NA	NA
WP_010962745.1\|567203_567572_-	30S ribosomal protein S13	NA	NA	NA	NA
WP_007550178.1\|567631_568273_-	nucleoside monophosphate kinase	A0A2K9L7B8	Tupanvirus	9.1e-05	34.9
WP_095742712.1\|568269_569598_-	preprotein translocase subunit SecY	NA	NA	NA	NA
WP_006279863.1\|569601_570072_-	50S ribosomal protein L15	NA	NA	NA	NA
WP_010962748.1\|570075_570588_-	30S ribosomal protein S5	NA	NA	NA	NA
WP_006279867.1\|570600_570972_-	50S ribosomal protein L18	NA	NA	NA	NA
WP_007551152.1\|570977_571523_-	50S ribosomal protein L6	NA	NA	NA	NA
WP_007551150.1\|571539_571935_-	30S ribosomal protein S8	NA	NA	NA	NA
WP_006279345.1\|571956_572265_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_010962750.1\|572281_572815_-	50S ribosomal protein L5	NA	NA	NA	NA
WP_006279347.1\|572821_573139_-	50S ribosomal protein L24	NA	NA	NA	NA
WP_006279348.1\|573138_573498_-	50S ribosomal protein L14	NA	NA	NA	NA
WP_007549925.1\|573511_573748_-	30S ribosomal protein S17	NA	NA	NA	NA
WP_095742713.1\|573740_573944_-	50S ribosomal protein L29	NA	NA	NA	NA
WP_010962752.1\|573955_574369_-	50S ribosomal protein L16	NA	NA	NA	NA
WP_095742714.1\|574383_574998_-	30S ribosomal protein S3	NA	NA	NA	NA
WP_007549821.1\|575037_575385_-	50S ribosomal protein L22	NA	NA	NA	NA
WP_006279181.1\|575390_575675_-	30S ribosomal protein S19	NA	NA	NA	NA
WP_015589143.1\|575678_576503_-	50S ribosomal protein L2	NA	NA	NA	NA
WP_010962755.1\|576504_576792_-	50S ribosomal protein L23	NA	NA	NA	NA
WP_012673183.1\|576788_577403_-	50S ribosomal protein L4	NA	NA	NA	NA
WP_095742715.1\|577405_578128_-	50S ribosomal protein L3	NA	NA	NA	NA
WP_095742861.1\|578137_578458_-	30S ribosomal protein S10	NA	NA	NA	NA
WP_095742716.1\|578472_579645_-	elongation factor Tu	A0A1V0SGC3	Hokovirus	4.7e-31	27.3
WP_010962760.1\|579995_581195_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	5.4e-43	31.7
WP_010962761.1\|581400_581895_+	hypothetical protein	NA	NA	NA	NA
WP_010082015.1\|582781_584329_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-131	50.1
WP_095742862.1\|586055_586973_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_095742717.1\|587096_588386_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_095742863.1\|588470_591236_-	pyruvate, phosphate dikinase	A0A2D2W2B1	Stenotrophomonas_phage	1.4e-89	41.4
WP_095742718.1\|591416_591860_+	hypothetical protein	A0A1B2LRR6	Wolbachia_phage	1.2e-32	85.4
WP_010082015.1\|592280_593828_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-131	50.1
WP_095742719.1\|593824_594637_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.2e-49	55.6
WP_095742720.1\|594628_596245_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_095742721.1\|596195_596990_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_095742722.1\|597058_604543_-	latrotoxin-related protein	NA	NA	NA	NA
WP_095742723.1\|604580_605468_-	ankyrin repeat domain-containing protein	A0A2L2DMI5	Acanthamoeba_polyphaga_mimivirus	1.1e-11	26.5
WP_095742724.1\|606108_608379_+	hypothetical protein	NA	NA	NA	NA
WP_095742725.1\|608723_610841_+	ankryin	Q9JML0	Wolbachia_phage	3.2e-123	48.4
WP_010082149.1\|610789_611617_+	hypothetical protein	NA	NA	NA	NA
WP_070356780.1\|611777_612992_-	hypothetical protein	NA	NA	NA	NA
WP_015588926.1\|614684_615113_-	DUF2924 domain-containing protein	Q9JML2	Wolbachia_phage	3.9e-60	84.4
WP_095742864.1\|615145_615736_-	ankyrin repeat domain-containing protein	F8QZT9	Wolbachia_phage	1.5e-06	46.5
WP_010962484.1\|615997_616600_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010962482.1\|617931_618741_-\|plate	baseplate assembly protein J	Q9JML6	Wolbachia_phage	7.2e-116	82.5
WP_015588922.1\|618743_619079_-\|plate	baseplate assembly protein	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	9.1e-41	73.9
WP_010082109.1\|619075_619330_-	hypothetical protein	A0A1B2LRW2	Wolbachia_phage	1.5e-14	77.8
WP_095742726.1\|619332_619797_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	2.6e-62	76.6
WP_095742727.1\|619783_620257_-	hypothetical protein	Q75QM3	Wolbachia_phage	9.5e-60	70.0
WP_010962479.1\|620263_620761_-\|tail	phage tail protein	Q75QM4	Wolbachia_phage	8.9e-24	45.1
WP_010082173.1\|620761_620980_-	hypothetical protein	Q75QM5	Wolbachia_phage	3.1e-05	71.4
WP_070357039.1\|621160_622183_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_010082171.1\|622368_622629_-	hypothetical protein	Q9JMM1	Wolbachia_phage	9.6e-22	71.8
WP_095742728.1\|622719_623688_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	2.2e-180	95.0
WP_070356777.1\|623798_624170_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	5.7e-52	87.7
WP_076611893.1\|624193_625206_-\|transposase	IS110-like element ISWpi14 family transposase	NA	NA	NA	NA
WP_095742729.1\|625635_626730_-	S49 family peptidase	Q9JMP1	Wolbachia_phage	9.4e-143	71.7
WP_010082196.1\|628332_628641_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_010082195.1\|628621_628843_-	hypothetical protein	NA	NA	NA	NA
WP_010082194.1\|629043_629457_-	hypothetical protein	NA	NA	NA	NA
WP_010082193.1\|629502_629724_-	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	1.0e-24	83.6
WP_015588914.1\|629723_631550_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	0.0e+00	85.5
WP_010962472.1\|631719_632211_-	MarR family transcriptional regulator	A0A1B2LRT3	Wolbachia_phage	1.5e-63	83.0
WP_095742730.1\|632227_633457_-	DNA modification methylase	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.5e-216	90.2
WP_081701964.1\|633583_633910_-	endonuclease	E9P621	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.9e-43	82.9
WP_010962468.1\|635231_636236_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	1.8e-180	94.6
WP_012673200.1\|638830_639184_+	hypothetical protein	Q9JMN4	Wolbachia_phage	1.3e-45	100.0
WP_010082157.1\|646423_647185_+	NTP transferase domain-containing protein	A0A2K9L4K9	Tupanvirus	4.0e-15	28.8
WP_006280064.1\|647316_648276_+	NAD(P)-dependent oxidoreductase	E3T4Y8	Cafeteria_roenbergensis_virus	3.7e-18	28.5
WP_095742731.1\|648232_650569_+	glycosyltransferase	NA	NA	NA	NA
WP_095742732.1\|650529_652224_+	hypothetical protein	NA	NA	NA	NA
WP_095742733.1\|652227_653217_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA
WP_006280068.1\|653217_654993_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	5.4e-31	35.0
WP_006280069.1\|654994_656044_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_006280070.1\|656040_657093_+	threonine aldolase family protein	NA	NA	NA	NA
WP_010082225.1\|657220_658351_+	MFS transporter	NA	NA	NA	NA
WP_095742734.1\|658382_659690_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	7.4e-70	34.5
WP_010082222.1\|659754_660669_-	DMT family transporter	NA	NA	NA	NA
WP_095742620.1\|660903_661735_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010082271.1\|662991_663912_-	helix-turn-helix domain-containing protein	E9P5Z7	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	2.3e-86	59.5
WP_010082270.1\|664000_665257_-	hypothetical protein	A0A1B2LRQ6	Wolbachia_phage	2.4e-166	78.9
WP_010082269.1\|665373_666030_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	1.6e-68	60.9
WP_095742865.1\|666200_667094_-	helix-turn-helix domain-containing protein	A0A1B2LRR8	Wolbachia_phage	3.1e-83	60.6
WP_010082015.1\|669009_670557_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-131	50.1
WP_095742735.1\|670553_671282_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.8e-82	76.3
WP_010962769.1\|671388_672777_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	3.2e-47	30.3
WP_010962771.1\|674527_674956_+	hypothetical protein	NA	NA	NA	NA
WP_010081945.1\|675477_675729_+	hypothetical protein	NA	NA	NA	NA
WP_010081946.1\|675718_676234_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_010962772.1\|676586_677594_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.1e-64	40.5
WP_010081987.1\|678033_678771_-	hypothetical protein	NA	NA	NA	NA
WP_010081988.1\|679299_680436_-	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	1.5e-29	28.6
WP_010081989.1\|680591_681290_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_015589158.1\|681342_681507_+	lipoprotein	NA	NA	NA	NA
WP_010962776.1\|681528_682203_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.0e-30	37.2
WP_010081891.1\|682242_682704_-	hypothetical protein	A0A2H4N7M3	Lake_Baikal_phage	3.8e-13	36.8
WP_070356885.1\|682751_683951_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_010962779.1\|683950_685033_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	6.8e-53	37.8
WP_095742736.1\|686638_687316_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_010962781.1\|687410_687839_-	hypothetical protein	NA	NA	NA	NA
WP_010962783.1\|688749_689034_-	DUF2610 domain-containing protein	NA	NA	NA	NA
WP_022626336.1\|689034_689406_-	hypothetical protein	NA	NA	NA	NA
WP_010962785.1\|689507_690557_+	hypothetical protein	NA	NA	NA	NA
WP_095742737.1\|690749_692201_-\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	5.9e-60	31.7

DBSCAN-SWA_6

773451 : 845346

Prochlorococcus_phage(25.0%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070356910.1\|773451_774450_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_010082470.1\|774625_775387_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_010082469.1\|775388_775916_-	cytochrome c family protein	NA	NA	NA	NA
WP_010962848.1\|778371_779016_+	hypothetical protein	NA	NA	NA	NA
WP_095742754.1\|779012_779360_+	hypothetical protein	NA	NA	NA	NA
WP_022626352.1\|779462_780731_+\|tRNA	proline--tRNA ligase	A0A1V0SEQ8	Hokovirus	1.5e-11	21.8
WP_010082456.1\|780727_781099_+	holo-[acyl-carrier-protein] synthase	NA	NA	NA	NA
WP_095742755.1\|781479_782976_+	cation:proton antiporter	NA	NA	NA	NA
WP_010082435.1\|782972_783635_-	hypothetical protein	NA	NA	NA	NA
WP_022626354.1\|783703_784498_-	hypothetical protein	NA	NA	NA	NA
WP_038199127.1\|784571_785393_-	DNA polymerase III subunit delta'	A0A1U9WR92	Streptococcus_virus	8.1e-06	23.9
WP_006280292.1\|785410_785998_-	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	1.2e-14	27.6
WP_010082479.1\|786116_786587_-	hypothetical protein	NA	NA	NA	NA
WP_010082478.1\|786662_787556_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_038199131.1\|787559_788387_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	7.5e-52	40.6
WP_010962862.1\|791771_792059_+	hypothetical protein	NA	NA	NA	NA
WP_095742756.1\|792074_792650_-	hypothetical protein	NA	NA	NA	NA
WP_006279213.1\|792733_793069_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_083250466.1\|793510_794857_-	hypothetical protein	NA	NA	NA	NA
WP_006279848.1\|795189_795405_+	hypothetical protein	NA	NA	NA	NA
WP_095742757.1\|795487_796522_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_095742758.1\|796524_797397_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_095742759.1\|797400_798894_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	2.3e-19	27.6
WP_095742868.1\|800197_801550_+	hypothetical protein	NA	NA	NA	NA
WP_010962871.1\|801783_801978_+	hypothetical protein	NA	NA	NA	NA
WP_095742760.1\|802012_804472_+	hypothetical protein	NA	NA	NA	NA
WP_095742761.1\|804673_806581_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_022626361.1\|806975_807272_-\|transposase	transposase	NA	NA	NA	NA
WP_095742762.1\|808121_808454_+\|transposase	transposase	NA	NA	NA	NA
WP_010962876.1\|808798_809176_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_010962877.1\|809159_810200_-	hypothetical protein	NA	NA	NA	NA
WP_010082412.1\|810202_810562_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_083250470.1\|811301_811484_-	hypothetical protein	NA	NA	NA	NA
WP_095742763.1\|811563_813117_+	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA
WP_010082414.1\|813123_813714_+	COQ9 family protein	NA	NA	NA	NA
WP_010082415.1\|813718_814012_+	hypothetical protein	NA	NA	NA	NA
WP_010082416.1\|814008_814557_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_010082417.1\|814679_815312_-	hypothetical protein	NA	NA	NA	NA
WP_095742764.1\|815301_819030_-	conjugal transfer protein	NA	NA	NA	NA
WP_010082420.1\|819119_822098_-	type IV secretion system protein	NA	NA	NA	NA
WP_095742765.1\|822094_824482_-	type IV secretion system protein	NA	NA	NA	NA
WP_010082423.1\|824491_827056_-	hypothetical protein	NA	NA	NA	NA
WP_095742766.1\|827048_829454_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_010082402.1\|829463_829760_-	hypothetical protein	NA	NA	NA	NA
WP_010082403.1\|829868_831404_+\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_080717633.1\|831450_831633_+	hypothetical protein	NA	NA	NA	NA
WP_010082404.1\|832447_835081_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	3.4e-74	36.7
WP_010962890.1\|835246_835690_+	PAS domain-containing protein	NA	NA	NA	NA
WP_007548610.1\|835788_835995_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_006279340.1\|836015_836381_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_095742767.1\|836393_837293_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.1e-11	38.9
WP_095742768.1\|837373_838885_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.8e-64	45.2
WP_095742769.1\|839412_839622_-	hypothetical protein	NA	NA	NA	NA
WP_010082408.1\|839796_841317_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_095742770.1\|841356_842337_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_007548602.1\|842465_842669_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_010082410.1\|842707_843502_+	NAD kinase	NA	NA	NA	NA
WP_070356931.1\|843585_844941_+	hypothetical protein	NA	NA	NA	NA
WP_080717620.1\|845181_845346_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

871503 : 985729

112

Bacillus_virus(12.0%)

transposase,terminase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010962940.1\|871503_871911_-\|transposase	transposase	NA	NA	NA	NA
WP_095742775.1\|872834_874085_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	4.9e-63	35.2
WP_010963049.1\|874086_874326_-	hypothetical protein	NA	NA	NA	NA
WP_006279567.1\|874316_874634_-	ribosome silencing factor	NA	NA	NA	NA
WP_095742776.1\|874756_875431_+	AAA family ATPase	NA	NA	NA	NA
WP_006279569.1\|875423_875912_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_010082353.1\|875908_876676_+	TatD family hydrolase	NA	NA	NA	NA
WP_007548577.1\|876703_877654_-	malate dehydrogenase	NA	NA	NA	NA
WP_010082354.1\|877657_878230_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_006279574.1\|878222_878729_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_006279576.1\|878732_879086_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_010082356.1\|879104_879473_-	HIT domain-containing protein	NA	NA	NA	NA
WP_010082357.1\|879476_879734_-	hypothetical protein	NA	NA	NA	NA
WP_070356981.1\|879750_880518_-	hypothetical protein	NA	NA	NA	NA
WP_095742777.1\|880701_882231_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_010082395.1\|882281_883232_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_095742737.1\|884302_885754_+\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	5.9e-60	31.7
WP_010963054.1\|886030_888481_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	2.3e-101	32.3
WP_010963056.1\|888645_889473_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_095742778.1\|889602_891201_+	iron ABC transporter permease	NA	NA	NA	NA
WP_010082015.1\|891994_893542_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-131	50.1
WP_010082016.1\|893962_894406_-	hypothetical protein	A0A1B2LRR6	Wolbachia_phage	1.2e-27	75.6
WP_095742779.1\|894685_895849_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_095742780.1\|895921_896419_-	hypothetical protein	NA	NA	NA	NA
WP_006279859.1\|896739_897441_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	3.0e-25	35.7
WP_095742781.1\|897433_898216_-	ABC transporter permease	NA	NA	NA	NA
WP_010962967.1\|899126_899309_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_038199264.1\|899319_900357_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_010962965.1\|900349_901306_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_080717640.1\|901968_902193_-	hypothetical protein	NA	NA	NA	NA
WP_038199260.1\|902147_903164_-	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	2.1e-19	28.6
WP_010082336.1\|903467_904994_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_022626393.1\|905125_905608_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_010962961.1\|905723_906011_+	hypothetical protein	NA	NA	NA	NA
WP_095742782.1\|906003_907905_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.5e-132	38.6
WP_006279610.1\|907917_908436_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.4e-08	33.8
WP_010082369.1\|908464_909718_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_010082370.1\|910439_911915_+	hypothetical protein	NA	NA	NA	NA
WP_010082371.1\|911956_912442_+	hypothetical protein	NA	NA	NA	NA
WP_010082372.1\|912539_912914_+	hypothetical protein	NA	NA	NA	NA
WP_010082373.1\|912986_913379_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_010082374.1\|913496_914540_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_095742783.1\|914557_915922_-	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA
WP_010962955.1\|915918_917361_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_022626390.1\|917364_919212_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_010962953.1\|919216_919525_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_010962952.1\|919515_920103_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_010082321.1\|920315_920744_+	hypothetical protein	NA	NA	NA	NA
WP_095742784.1\|920871_922788_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	2.1e-113	37.9
WP_095742785.1\|923317_923629_-\|transposase	transposase	NA	NA	NA	NA
WP_007549942.1\|923571_923718_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_007549940.1\|923733_923937_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010962950.1\|924028_925195_-	aspartate kinase	NA	NA	NA	NA
WP_051955852.1\|925318_925543_+	hypothetical protein	NA	NA	NA	NA
WP_010082344.1\|925621_927088_-	hypothetical protein	NA	NA	NA	NA
WP_010082345.1\|927223_928498_+	amino acid permease	NA	NA	NA	NA
WP_095742666.1\|928711_929365_-\|transposase	transposase	NA	NA	NA	NA
WP_007552972.1\|929402_929672_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015589289.1\|929992_930445_-	hypothetical protein	NA	NA	NA	NA
WP_095742786.1\|930585_931620_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_010082340.1\|932431_932932_-	DNA mismatch repair protein MutS	NA	NA	NA	NA
WP_038199241.1\|933024_933789_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_095742787.1\|933868_934591_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_010082343.1\|934591_935128_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_010082359.1\|935298_936276_+	quinone oxidoreductase	NA	NA	NA	NA
WP_095742788.1\|936624_937032_-\|transposase	transposase	NA	NA	NA	NA
WP_010082361.1\|937244_937541_-	hypothetical protein	NA	NA	NA	NA
WP_010082338.1\|941565_942591_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006280416.1\|942794_943682_+	aspartate carbamoyltransferase catalytic subunit	A7RB08	Paramecium_bursaria_Chlorella_virus	6.2e-28	32.5
WP_010962911.1\|944631_945378_+	signal peptidase I	NA	NA	NA	NA
WP_010082333.1\|945385_947134_-	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	1.9e-89	36.1
WP_010962909.1\|947111_947570_-	molecular chaperone Hsc20	NA	NA	NA	NA
WP_038199190.1\|947562_947976_-	iron-sulfur cluster assembly accessory protein	A0A0P0CQC4	Ostreococcus_lucimarinus_virus	5.3e-14	33.9
WP_007548853.1\|947988_948372_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.6e-52	79.0
WP_010962907.1\|948563_949475_+	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	8.6e-17	38.5
WP_070356933.1\|949461_950805_-	DNA repair protein RadA	NA	NA	NA	NA
WP_081420822.1\|951400_951583_-	hypothetical protein	NA	NA	NA	NA
WP_010081866.1\|951657_952395_-	putative folate metabolism gamma-glutamate ligase	NA	NA	NA	NA
WP_038199174.1\|952396_952876_-	dihydrofolate reductase	G3MBI7	Bacillus_virus	8.0e-14	33.8
WP_095742789.1\|952872_954153_-	dihydropteroate synthase	S4VNV0	Pandoravirus	2.4e-25	27.8
WP_007548841.1\|954149_954536_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_095742869.1\|954575_955232_-	CADD family putative folate metabolism protein	NA	NA	NA	NA
WP_010962901.1\|955421_955745_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.4e-16	44.6
WP_010962900.1\|955872_956493_-	3'-5' exonuclease	NA	NA	NA	NA
WP_095742790.1\|956778_956961_+	hypothetical protein	NA	NA	NA	NA
WP_010082361.1\|957804_958101_+	hypothetical protein	NA	NA	NA	NA
WP_095742791.1\|959656_961930_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_006279944.1\|961944_962217_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_012673289.1\|962229_962490_-	hypothetical protein	NA	NA	NA	NA
WP_095742788.1\|962579_962987_-\|transposase	transposase	NA	NA	NA	NA
WP_010082361.1\|963199_963496_-	hypothetical protein	NA	NA	NA	NA
WP_010962938.1\|966629_968243_+	hypothetical protein	NA	NA	NA	NA
WP_022626382.1\|968420_968768_+\|transposase	transposase	NA	NA	NA	NA
WP_049973597.1\|968934_969270_+	hypothetical protein	NA	NA	NA	NA
WP_095742792.1\|969686_971117_-	2-polyprenylphenol 6-hydroxylase	A0A0R6PHP6	Moraxella_phage	5.9e-20	24.0
WP_038199232.1\|971113_971854_-	metal ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	8.0e-05	21.6
WP_010962934.1\|971845_972727_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_095742788.1\|972950_973358_-\|transposase	transposase	NA	NA	NA	NA
WP_010082361.1\|973571_973868_-	hypothetical protein	NA	NA	NA	NA
WP_095742793.1\|974280_974994_+	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_010963019.1\|975312_976206_+	sigma-70 family RNA polymerase sigma factor	A0A248SJA5	Salicola_phage	9.0e-27	29.4
WP_006279310.1\|976198_976696_+	hypothetical protein	NA	NA	NA	NA
WP_095742794.1\|976819_977977_+	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	2.1e-52	36.7
WP_010963021.1\|978056_978794_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_007550541.1\|978835_978988_-\|transposase	transposase	NA	NA	NA	NA
WP_095742795.1\|979272_980031_-	cytochrome c1	NA	NA	NA	NA
WP_006280242.1\|980399_981629_-	cytochrome b/b6	NA	NA	NA	NA
WP_010082675.1\|981733_981904_-	DnaJ domain-containing protein	NA	NA	NA	NA
WP_095742796.1\|981924_983502_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.1e-06	36.6
WP_022626406.1\|983521_983770_-	DnaJ domain-containing protein	NA	NA	NA	NA
WP_022626407.1\|983942_984506_+	NifU family protein	A0A218MN08	uncultured_virus	2.1e-05	30.0
WP_095742797.1\|984502_985729_+\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	2.8e-26	26.7

DBSCAN-SWA_8

1019461 : 1078973

Bacillus_phage(14.29%)

transposase,portal,terminase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095742788.1\|1019461_1019869_+\|transposase	transposase	NA	NA	NA	NA
WP_095742805.1\|1020183_1020516_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_095742870.1\|1020519_1022121_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	4.4e-40	36.2
WP_081420837.1\|1022384_1022696_+	hypothetical protein	NA	NA	NA	NA
WP_010081992.1\|1022692_1023346_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010081993.1\|1023347_1023995_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	3.3e-18	33.3
WP_006279425.1\|1024245_1024524_+	DUF2671 domain-containing protein	NA	NA	NA	NA
WP_010081994.1\|1024553_1025258_-	DsbA family protein	NA	NA	NA	NA
WP_010963012.1\|1025312_1025774_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_010963011.1\|1026070_1026661_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_022626401.1\|1026657_1027947_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_010963009.1\|1027914_1028877_-	J domain-containing protein	NA	NA	NA	NA
WP_010963008.1\|1029501_1030569_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	6.8e-114	59.3
WP_007548750.1\|1030756_1031449_+	phosphatidylserine decarboxylase	A0A1V0SDU9	Indivirus	4.7e-15	41.5
WP_010081963.1\|1031445_1032216_+	hypothetical protein	NA	NA	NA	NA
WP_038199325.1\|1032238_1033582_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_070356966.1\|1033583_1035050_+	amino acid carrier protein	NA	NA	NA	NA
WP_010963004.1\|1035062_1035641_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_010082000.1\|1035631_1037509_-	hypothetical protein	NA	NA	NA	NA
WP_083250476.1\|1037561_1038473_-	cation diffusion facilitator family transporter	A0A1V0SED0	Indivirus	1.0e-09	28.2
WP_095742806.1\|1045141_1046419_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.2e-93	49.7
WP_010081954.1\|1046459_1047680_-	MFS transporter	NA	NA	NA	NA
WP_095742871.1\|1047815_1049042_-	MFS transporter	NA	NA	NA	NA
WP_006280043.1\|1050822_1051311_+	hypothetical protein	NA	NA	NA	NA
WP_095742807.1\|1051356_1052550_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_010082013.1\|1052618_1053635_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_007549273.1\|1054037_1054856_+	CBS domain-containing protein	NA	NA	NA	NA
WP_006280047.1\|1054922_1055201_-	hypothetical protein	NA	NA	NA	NA
WP_006280049.1\|1055281_1055575_-	hypothetical protein	NA	NA	NA	NA
WP_007549277.1\|1055708_1056746_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.9e-61	41.1
WP_010081959.1\|1056742_1057465_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.7e-36	39.4
WP_010081960.1\|1057539_1058250_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_006279489.1\|1058233_1058611_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_095742808.1\|1058832_1060083_+	DUF3333 domain-containing protein	NA	NA	NA	NA
WP_006279487.1\|1060089_1060887_+	phosphoribosylformylglycinamidine synthase subunit PurQ	A9YX36	Burkholderia_phage	3.5e-22	32.8
WP_095742809.1\|1060880_1061117_+	hypothetical protein	NA	NA	NA	NA
WP_095742810.1\|1061689_1063153_+\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	3.4e-55	32.0
WP_010081984.1\|1063506_1064484_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_010081985.1\|1064483_1065101_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_010081986.1\|1065351_1065585_+	hypothetical protein	NA	NA	NA	NA
WP_080717643.1\|1065560_1065824_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_010962986.1\|1066059_1067253_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	5.7e-85	44.4
WP_095742811.1\|1067307_1069851_-	hypothetical protein	NA	NA	NA	NA
WP_010962984.1\|1069854_1071342_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_010962983.1\|1071755_1073690_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_070356957.1\|1073698_1075366_+	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	2.0e-88	36.4
WP_010082066.1\|1075486_1075852_+	hypothetical protein	NA	NA	NA	NA
WP_010962980.1\|1076249_1076894_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_010082068.1\|1076899_1077706_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010082069.1\|1077938_1078232_+\|transposase	transposase	NA	NA	NA	NA
WP_081420798.1\|1078303_1078651_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-08	39.4
WP_010082072.1\|1078808_1078973_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LK055284

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection