CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010973	Burkholderia pseudomallei strain vgh07 isolate human chromosome 1, complete sequence	2 crisprs	RT,DEDDh,DinG,csa3,cas3,WYL	0	2	8	0
NZ_CP010974	Burkholderia pseudomallei strain vgh07 isolate human chromosome 2, complete sequence	4 crisprs	cas3,DinG,csa3	1	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010973_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010973_1

608449-608571

Orphan

Consensus_repeat	Method
GCGGCGGCGGTGGCGGCGGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP010973_1

>merge|NZ_CP010973|1|608449-608571|PILER-CR
GCGGCTACGGTGGCGGCGGCGGCGGTTACGGCGGCGGCCGGGACATGGAGCGCGGCGGCGGTGGCGGCCGTGCGTCGGGTGGCGGCGGCGCGGGTGCGCGCAGCGGCGGCGGTGGCGGTGGCG

>NZ_CP010973|1|1|608449-608571|PILER-CR
GCGGCTACGGTGGCGGCGGCG	GCGGTTACGGCGGCGGCCGGGACATGGAGC
GCGGCGGCGGTGGCGGCCGTG	CGTCGGGTGGCGGCGGCGCGGGTGCGCGCAGCGG
CGGCGGTGGCGGTGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010973.1\|WP_045243357.1\|599675_600290_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP010973.1\|WP_004530936.1\|595814_596798_-\|KpsF/GutQ-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|182814
NZ_CP010973.1\|WP_004522845.1\|611578_611830_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010973.1\|WP_004537849.1\|603696_606564_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP010973.1\|WP_004552430.1\|612002_612320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010973.1\|WP_004552424.1\|619683_620385_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010973.1\|WP_004202932.1\|602392_603478_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223701
NZ_CP010973.1\|WP_004522854.1\|596925_598935_+\|sodium/hydrogen-exchanger-family-protein	unknown	unknown	gnl\|CDD\|235131
NZ_CP010973.1\|WP_024431663.1\|618553_619021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010973.1\|WP_011204830.1\|608762_609494_-\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NZ_CP010973.1\|WP_004200146.1\|595275_595815_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|224692
NZ_CP010973.1\|WP_020850417.1\|599018_599582_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP010973.1\|WP_044362381.1\|601211_602093_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP010973.1\|WP_045243358.1\|609836_611417_+\|hydrolase	unknown	unknown	gnl\|CDD\|293817
NZ_CP010973.1\|WP_009936297.1\|616797_618186_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010973.1\|WP_004552428.1\|614872_616219_-\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP010973.1\|WP_004195190.1\|606777_607965_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP010973.1\|WP_009936298.1\|618208_618532_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010973.1\|WP_004526064.1\|600302_601160_+\|DUF4743-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_CP010973.1\|WP_017844066.1\|612807_614835_-\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824

Protein	Function_ID	Function_description	E-value
NZ_CP010973.1\|WP_045243357.1\|599675_600290_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.58971e-42
NZ_CP010973.1\|WP_004530936.1\|595814_596798_-\|KpsF/GutQ-family-sugar-phosphate-isomerase	gnl\|CDD\|182814	PRK10892, PRK10892, arabinose-5-phosphate isomerase KdsD.	2.0924e-136
NZ_CP010973.1\|WP_004537849.1\|603696_606564_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP010973.1\|WP_004202932.1\|602392_603478_-\|membrane-protein	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.89446e-15
NZ_CP010973.1\|WP_004522854.1\|596925_598935_+\|sodium/hydrogen-exchanger-family-protein	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	1.57079e-95
NZ_CP010973.1\|WP_011204830.1\|608762_609494_-\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	1.80272e-47
NZ_CP010973.1\|WP_004200146.1\|595275_595815_-\|HAD-family-hydrolase	gnl\|CDD\|224692	COG1778, COG1778, Low specificity phosphatase (HAD superfamily) [General function prediction only].	1.33155e-78
NZ_CP010973.1\|WP_020850417.1\|599018_599582_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	3.50645e-93
NZ_CP010973.1\|WP_044362381.1\|601211_602093_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	0
NZ_CP010973.1\|WP_045243358.1\|609836_611417_+\|hydrolase	gnl\|CDD\|293817	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes proteins required for natural transformation competence including Neisseria gonorrhoeae ComA, Pseudomonas stutzeri ComA, Bacillus subtilis ComEC (also known as ComE operon protein 3) and Haemophilus influenza ORF2 encoded by the rec-2 gene, as well as Escherichia coli YcaI which does not mediate spontaneous plasmid transformation on nutrient-containing agar plates. It also includes the phosphorylcholine esterase (Pce) domain of choline-binding protein e from streptococcus pneumonia. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. .	5.07618e-05
NZ_CP010973.1\|WP_004552428.1\|614872_616219_-\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	4.07401e-16
NZ_CP010973.1\|WP_004195190.1\|606777_607965_+\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.31309e-122
NZ_CP010973.1\|WP_004526064.1\|600302_601160_+\|DUF4743-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	6.01841e-81
NZ_CP010973.1\|WP_017844066.1\|612807_614835_-\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	4.31707e-35

>NZ_CP010973.1|WP_004195190.1|606777_607965_+|MFS-transporter
MSNPSATSTRMSAPELRATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVLVGIALGAYGVTQSLLYIFYGWASDKFGRKPVIAAGLLIFALGSFVAAFAHDITWIIVGRVIQGMGAVSSAVLAFIADLTSEHNRTKAMAMVGGSIGMSFAVAIVGAPIVFHWVGMSGLFAIVGALSVAAIGVVLWVVPDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVASHWQVYLPVMGLAFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLGVATHTILIVAAILFVYFLGFNILEASQPSLVSKLAPGSRKGAATGVYNTTQSIGLALGGVVGGVLLKHGGPDTVFFACSALVAVWLIIAAGMKQPPRKA
>NZ_CP010973.1|WP_004537849.1|603696_606564_-|excinuclease-ABC-subunit-UvrA
MEQIRIRGARTHNLKNVNLDLPRHKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYCPDHEIPLEAQSVSQMVDAALALPEETRLMILAPVVANRKGEHAELFDEMQAQGFVRFRVRSGGGAANEGAAKIYEVDSLPKLKKNDKHTIDVVVDRLKVRPDMKQRLAESFETALRLADGRAIALEMDTDREHLFSSKFACPICSYSLQELEPRLFSFNNPMGACPECDGLGQITFFDPKRVVAHPSLSLAAGAVKGWDRRNQFYFQMLQSLAAFYDFDIDTAFEDLPEKIRKILLYGSGKQTIPFSYINERGRTTIREHVFEGIIPNLERRYRETDSAAVREELAKYQNNQPCPSCDGTRLRREARFVRVGQGDYARAIFEVSSWPLRDALGYFDGLTLDGAKREIADKVIKEIVARLTFLNNVGLDYLSLERSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVIVVEHDEDMIRTADYVVDMGPGAGEHGGMIVAEGTPKQVQANGDSLTGQYLVGKRTIEYPDERISPDAQRMLRIVDAHGNNLKHVDLDLPVGLLTCITGVSGSGKSTLINDTLYNAVARHLYGSATEPAPHESIEGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPASKERGYDPGRFSFNVKGGRCESCQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVQYKGRNISEVLDMTVEHAYEFFSAVPVVARKLKTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIALLLEVIHRLRDQGNTVVIIEHNLDVIKTADWVIDLGPEGGAGGGQIIAQGTPEQVAKTKASFTGKYLAPLLKRKK
>NZ_CP010973.1|WP_004202932.1|602392_603478_-|membrane-protein
MEKQSEPTREPQAREPHLRSVRLTSDFSLPKLSAIEIGSYLLALFGLWLVLHLKLLGGLLAGLLVYQLVHMIAPAIERHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRTPEWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGIDRHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALPIFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLEYFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVKRELIYLRLI
>NZ_CP010973.1|WP_044362381.1|601211_602093_+|formyltetrahydrofolate-deformylase
MPADHSFILKLSCPDRRGIVHAVSGFLLERGSNILDSAQFGDSRTGEFFMRVHFEQAGACGAAAALDALRAEFAPLAEAFAMRWELHDAAVKPRVVILVSKIGHCLNDLLFRYRTGQLPIEISAIVSNHKDFYQLAASYDIPFHHLPLAAGASADAKAAQEARVLEVIDGHAADLVVLARYMQILSPALCERLAGHAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDHSMTPDELTAVGRDVECVTLARAVKWHVEHRIVLNGTKTVVFR
>NZ_CP010973.1|WP_004526064.1|600302_601160_+|DUF4743-domain-containing-protein
MTFACIAAARRFDAAAHVPFAIAGRQVGWLRRGDVARLARWPDVFEFPAGRVELAARYDSVDARSMALASPIGALAAEGAIVGWRDEIYAIRNRFDDPPLAYIERAASRFFGTMTYAVHLNGIVEYAPSAPLAMWLGRRSATKATDPGMLDNVVAGGIGWGLGIEDTIAKECWEEAGIAAELAARAIPGRVAHVLRSLPEGTQAEQIFVYDLPLPRDFVPHNQDGEVAEHLLAGVDEIVAWLRAGEATVDASLAMLDSLLRHRAIAAEDARGIDALFAPPPPGLG
>NZ_CP010973.1|WP_045243357.1|599675_600290_+|LysE-family-translocator
MPNFMLFLATSIAITVAPGPDNLQVLARGISQGRAAGLVAALGFASGVLFHTTLAAFGVAALLRSSPVAFHLLKLAGGAYLIWIGIKALRSKGLATAHARAPQPLSTIFRQSVIGNLLNPKVTLFFVVFLPQFVDPHGAQPVALQMLELGALFMAQTAAVFSVFGVGAGAIGVWLKRRPRVGVWLDRLAGATFVALGLRVALKD
>NZ_CP010973.1|WP_020850417.1|599018_599582_+|adenine-phosphoribosyltransferase
MMSTSDAPLDPVEFIHSRIRTVPDWPQPGVMFRDITPLLQSAKALRVLVDLFVERYVDAKLDYIAGLDARGFIIAPIVAYELSVGFVPIRKVGKLPYATQRESYALEYGTATVEIHEDACKPGDRVVIVDDLIATGGTMMAGKNLLERLGAVVVEGAAIVDLPDLGGSALLREAGLPLYTVTEFPGH
>NZ_CP010973.1|WP_004522854.1|596925_598935_+|sodium/hydrogen-exchanger-family-protein
MISPLEMTLLLLLASVVGVVVFRSLNLPPMLGYLTVGILVGPHALGFAADLERAEHLAEFGVVFLMFSIGLEFSLSKLRAMRRLVFGLGLAQVLGTIAIALVLGALFERWMHITWEGSVALGGALAMSSTAIVSKMLAERLEIETEHGRNIFGVLLFQDLAVVPLLIVIAAFGGESSKDLAMSLGFAAVKIVVALALLLIVGQRFMTRWLNVVARRRSQELFVLNLLLVTLGAAFITDRFGLSLALGAFIAGMLISETPYRHQVEEDIKPFRDVLLGLFFVTTGMLLDPSVIWRHPLLVLAFFVGQVLLKSVMITGLARAFGATPGVAMRTGLGLAQAGEFGFVLLNLILDRHLVDATLLQSILASMLLSMLAAPFLIQNADRIVMRLSAAEWMQQSLQMTRIATQSIKQKGHVIICGYGRAGQNLARMLEQEGIAYVALDLDPDRVTAAAAAGESVVFGDAARRESLLAAGIHRAAAVAVTYANTPSALRVLHNVHELEPTLPAIVRTVDDADLEKLLAAGATEVIPEIVEGSLMLASHTLVLMGVPMRRVVRRVEEMRDARYSLLRGYFHGADDADDDDHEQVRLQSVPVDARADAVGRSLSELGLFALGLEVTAIRRHGIRGVEPDPETKLRASDIVVLRGLPEALAQAEERLSRHRREGGSAAVA
>NZ_CP010973.1|WP_004530936.1|595814_596798_-|KpsF/GutQ-family-sugar-phosphate-isomerase
MIAKINDDRALALARDVLDIEANAVRALAEQLDGEFVAAVGLLLNCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVHPAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRLGAKLIAMTGRPASSLAMLSDVHLNAGVAKEACPLNLAPTASTTAALALGDALAVAVLDARGFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLDATLSDALFQITAKRMGMTAVIDDANRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRHPRTIAPDHLAVEAVELMERHRINQMLVVDERGALIGALNMHDLFSKKVI
>NZ_CP010973.1|WP_004200146.1|595275_595815_-|HAD-family-hydrolase
MSAPPATAAERASRVKLMIFDVDGVLTDGGLHFTAAGDAMKSFNTLDGHGVKLLGEAGIATAIITGRRSEALAARAKEMRIAHLHEGVENKLAVFGELLRALGLEPGECGYMGDDWPDLAVMLRCGFAAAPANAHPDVIARAHWVAEARGGHGAVREVCDAILRAQHRYDALLAAACGA
>NZ_CP010973.1|WP_011204830.1|608762_609494_-|dienelactone-hydrolase-family-protein
MGTRSIAYDCGGARLTGYFADDAPNTKKPAVLIAHEAFGLNEHIRARARRLAELGYAAFALDMYGAEGFPMPEAIRRHIELMSTPGLMHARASAALSVLMEQPGVDRERVAAIGFCQGGISALELARGGAPIRCAVGFHPGLMRPAGSQDGPIRAKVLMMIGARDPDVPAADQAAFAAEMQEKQVDWQLHLFGGVGHAYTNPDADGWNKPGYGYSRAADQRAWTMMLALFDEVFGGAAAVGKA
>NZ_CP010973.1|WP_045243358.1|609836_611417_+|hydrolase
MNPFFGAQREWQDVPVPARAYARLDNLHLPHADAPDRRAALRFDLIDADWLDNQAGADNPLFDLGRRHRMRAAWKRWFAAARGGDADDPFRAAPLYVLEVSVPFDAREWRKRLGLTREAMANDAHGEILAAFRRRWYELTVLREADARAGAMLGLLHRGIADEGLRVCCLAALAPAAHAAGLTALGTLAGSPALTSASLKPLVRDVRATYLGVYDVGQANANALLGGIRGRDLHGVVWHGVFPTLYFDLGMPLQSQRHTAPSNVRFCFTAEPPIVLSHWHDDHLGGVALPTAAGCPTPQQMDWIVPDYSLATRHKALVTAIWVAGGSVHVFSASPAGRRLQAATASGHLLTLTRGTARDPNNGGIVMQVSSAQQQARRFADPPRSWLLPGDCDYKHFPSTFTPTNVIALVAPHHGADLRKGSVPVPPAASGYLRLVYSFGRDNKYQHPRQGFVDAHHAAGWTHPVVPATGAITCVSGDDVRTTNVHSPWSAKPRGVLVGWSKAPHSVPACTLGGGATNCTLPLAKV
>NZ_CP010973.1|WP_004522845.1|611578_611830_-|hypothetical-protein
MRLIEPNEHAGYLAALHARGLSGNEFTLRETDTTDPKGDENIGQTGFVTITRHSTHATREYPLGDAGDWLQHFKKDLEAGAFD
>NZ_CP010973.1|WP_004552430.1|612002_612320_-|hypothetical-protein
MIAPDPESTFRGLPLTPEQNAEVMHYIKIRTQRGLPWDTPELEAMIRDMMLPPEDEAADSDFLSDEARAVAERAMSSVEDEMDPIEAREEWRAAMEAENMKGLRR
>NZ_CP010973.1|WP_017844066.1|612807_614835_-|RNA-directed-DNA-polymerase
MLTDMLPFEVPPTFSNRGYYRFLRNNSIEIEKEQVRWICETTDLDQTMRLLFGIKPDVGIATEVVTEWGRQKTRRFVPIGKCEMATIPFNFRVTHNLDGRILSVVHPRNQVAVASFYATHSALIIYHTSVSEFSIRRPVSVSRYAYFKDKLHEERMDAVAGLEEEDREYEQLGSYFVYRKFRNIHRFFESYEYHECEKKYDAMVQFDVSKCFDSIYTHSLPWAVLGKDQTKFSLKQSKATFGGQFDALMQNLNQKETNGIVTGPEFSRIFAEIILQSVDVELMTRLAQESNLTHKIDYEIFRYVDDFFVFYNAEFAQLKIFETLQEVLKSKKLSVNTSKIKRYQKPIITEITIAKEWISSLLNDEIDPVCEKESQVDPAVLPTHKLMCSINANRLITRYKSAIKEAGVTYGDLLNYTFAIAENKIEKLFKAYVASDKSDRDRKHLSKALLAIMEFAFFAYSASPKVNHTVRLCRMIVTSVDFLHVQGLPYELKHLLFKYVHDNVMQQLEKNTMSALREVESLYLLISLSQIGREYWLPLSVLLRHFLIEEKEGTGDYIRPTGFMSHFSITTLLSYIKDKVRYAKLKRFVEAHVITKLEHMKAHCPNDAETLIMLLDLVVCPYISATAKDNIGQIFGLDAEGLSSVQSCNDHWFTAWGDKFDLGKELDAKRSREVY
>NZ_CP010973.1|WP_004552428.1|614872_616219_-|RNA-directed-DNA-polymerase
MIDQMFTAENFRRIYDAENRKGIDLATRYFPSLEPFTLAVRDKVQEIRDLRKVETTLTAEDFKAQLLALKAELVVLKEDKSSAIDILMGDISQKVLQPSFKIDLSQKTGPKGKPVFCIDADPETFFVIKQLQHNIHRIYSIKQANRHDLVCQLRDMLGSKFPFELVRTDISSFYESINRKHLVEKLDRDQLLSPASKKYIKQALDSYGTISGALIGIPRGVGISAYLAELYLRPVDKAIRAIPGLVLYCRFVDDIVAVFARPPIGKSLGSFKDRIIAIFGDSGLAHNSAKTSEFKLADTSTKKFEYLGYRFLLKPSQFKISPSAAKVTKYRARMDAAFEDYWRERPINPKGAFRKLVGRIKFLTGNTRLSNSKSCAVTGIYFNNSIVTDLSSFQLLDKRLKARIAELKRTSLQNQLKKLRFTTGFEERRYHNFSTKELQTIVRAWKHG
>NZ_CP010973.1|WP_009936297.1|616797_618186_-|hypothetical-protein
MKTFVAAILVADLMIAGQAAADAIQPNQTAATVKYADVVQLFPNALYPSKHGALTTYDGLHLRGNGFDAVNPAANILLIDGNRALQMCVQDKPTAGCTPGFSVAGITGGTELEVNGIPENFKGFRRIAVATTSGAQGLGTAIPSSAPTVTFSPFGAIWPRVAALIVLVASISLVPIVFRRRVPLSGAPAGTMIRQWQLLLVEPDTNTFSLSRLQLVVWTFVALFAWSYLSIARSVIQMTPTFGDIPGSLAGLLGISVGATVSTLTLNVVKGGKAAGPTSPSFSDFISVGGVVAPDRLQYLLWTVVGAIAYVTLTLSLDPARIQQYIELPTGFLTLSGISAAGYLGARIARSAGPIVSRVTAAPDAETQAVTLTVEGTALSKSGKYLIAYSTNNGYGSAVAITASELQLPIVANVEDQDGSPDLYKKLVIVFKPARGNWFGQQSQKGQFSIINPDGQRADWPF
>NZ_CP010973.1|WP_009936298.1|618208_618532_-|hypothetical-protein
MEVDWNTIFEGATDAAITAMGNNAGEVADYLGQVIQSHKQRLQLIGGFYASGSISADDLREKLDQEENTYNLQLQALDCTAEAALQIGINAFVNNLYTALLSTVKLV
>NZ_CP010973.1|WP_024431663.1|618553_619021_-|hypothetical-protein
MNKTKVGASWIYACFFMIAIALLASCTTHLVAPYDQSNQTALATISSDIMGFYEGLLETPLTQRNYASSEKMYGQIESEIRVFLIKQPLILVNKPSLDASKDLLDRWEKARSDHRKNNTYSDADLTIDRANFQGILSAIFQGETAKQMASSPTAK
>NZ_CP010973.1|WP_004552424.1|619683_620385_+|hypothetical-protein
MKKRTFLKNQLINAWTECVKYDYPTGVINGERALQACLYHRLINDFKANGMENCRRIFIEPTIDVKGRTSRRIPDMMICDTNNVIAIFELKFHPRVTLSGRFGDALRGGVEKDLDTLLSVAQDLNGVSAKPQADASHIEVSNERYLGVSGASKTYGLASNLMLVWAGIYKRSDRSDASSTERLARVFDDAGVTIQGGFLELHAQTQEEAHPVLVDRYSGWKTPRILYGDATLA

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Crispr_ID: NZ_CP010973_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010973_2

1392760-1392901

Orphan

Consensus_repeat	Method
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010973_2

>merge|NZ_CP010973|2|1392760-1392901|CRISPRCasFinder
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCGGCGGACGAATGCCGTTCGCAAGTTCGCAGCGGTTCGCGCTGGAACGGCGTCTGCCGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCTGGCG

>NZ_CP010973|2|1|1392760-1392901|CRISPRCasFinder
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCGGCGG	ACGAATGCCGTTCGCAAGTTCGCAGCGGTTCGCGCTGGAACGGCGTCTGC
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCTGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010973.1\|WP_004191983.1\|1394305_1394530_-\|lipoprotein	unknown	unknown	unknown
NZ_CP010973.1\|WP_004534542.1\|1380215_1383560_+\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|335690
NZ_CP010973.1\|WP_004192284.1\|1401445_1402381_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_CP010973.1\|WP_004193167.1\|1375486_1375666_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010973.1\|WP_045243379.1\|1383556_1387369_+\|exodeoxyribonuclease-V-subunit-beta	unknown	unknown	gnl\|CDD\|236784
NZ_CP010973.1\|WP_004534567.1\|1377356_1379633_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372320
NZ_CP010973.1\|WP_004195184.1\|1398254_1399079_+\|DUF1223-domain-containing-protein	unknown	unknown	gnl\|CDD\|369071
NZ_CP010973.1\|WP_004193486.1\|1402756_1403953_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP010973.1\|WP_004193488.1\|1390058_1390463_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP010973.1\|WP_009941946.1\|1399069_1400206_+\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP010973.1\|WP_004526525.1\|1400221_1401013_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP010973.1\|WP_004547698.1\|1387365_1390062_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|236783
NZ_CP010973.1\|WP_004193339.1\|1397788_1398094_+\|pentapeptide-MXKDX-repeat-protein	unknown	unknown	gnl\|CDD\|131998
NZ_CP010973.1\|WP_004191162.1\|1375370_1375490_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010973.1\|WP_004526507.1\|1375807_1377172_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP010973.1\|WP_004538449.1\|1390876_1392160_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP010973.1\|WP_004192878.1\|1377168_1377360_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010973.1\|WP_004521865.1\|1395217_1397149_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP010973.1\|WP_004545149.1\|1393123_1394056_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP010973.1\|WP_004193128.1\|1394781_1394994_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532

Protein	Function_ID	Function_description	E-value
NZ_CP010973.1\|WP_004534542.1\|1380215_1383560_+\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	0
NZ_CP010973.1\|WP_004192284.1\|1401445_1402381_+\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	4.46808e-57
NZ_CP010973.1\|WP_045243379.1\|1383556_1387369_+\|exodeoxyribonuclease-V-subunit-beta	gnl\|CDD\|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0
NZ_CP010973.1\|WP_004534567.1\|1377356_1379633_-\|hypothetical-protein	gnl\|CDD\|372320	pfam12805, FUSC-like, FUSC-like inner membrane protein yccS. This family has similarities to the fusaric acid resistance protein family. The proteins are lodged in the inner membrane.	5.92051e-82
NZ_CP010973.1\|WP_004195184.1\|1398254_1399079_+\|DUF1223-domain-containing-protein	gnl\|CDD\|369071	pfam06764, DUF1223, Protein of unknown function (DUF1223). This family consists of several hypothetical proteins of around 250 residues in length which are found in both plants and bacteria. The function of this family is unknown. Structurally it lies in the Thioredoxin-like superfamily.	3.14399e-68
NZ_CP010973.1\|WP_004193486.1\|1402756_1403953_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.94618e-60
NZ_CP010973.1\|WP_004193339.1\|1397788_1398094_+\|pentapeptide-MXKDX-repeat-protein	gnl\|CDD\|131998	TIGR02953, conserved_hypothetical_protein, pentapeptide MXKDX repeat protein. Members of this protein family are small bacterial proteins, each with an N-terminal signal sequence followed by up to 11 imperfect repeats of a pentapeptide. The pentapeptide repeat usually follows the form Met-Xaa-Lys-Asp-Xaa.	0.000353246
NZ_CP010973.1\|WP_009941946.1\|1399069_1400206_+\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	3.97302e-55
NZ_CP010973.1\|WP_004526525.1\|1400221_1401013_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	1.21624e-90
NZ_CP010973.1\|WP_004547698.1\|1387365_1390062_+\|AAA-family-ATPase	gnl\|CDD\|236783	PRK10875, recD, exodeoxyribonuclease V subunit alpha.	1.99839e-72
NZ_CP010973.1\|WP_004193488.1\|1390058_1390463_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	3.43394e-65
NZ_CP010973.1\|WP_004526507.1\|1375807_1377172_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP010973.1\|WP_004538449.1\|1390876_1392160_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.2533e-53
NZ_CP010973.1\|WP_004521865.1\|1395217_1397149_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP010973.1\|WP_004545149.1\|1393123_1394056_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	4.58404e-12
NZ_CP010973.1\|WP_004193128.1\|1394781_1394994_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	5.81885e-06

>NZ_CP010973.1|WP_004538449.1|1390876_1392160_-|EAL-domain-containing-protein
MPKTQGFSPESLISQFTRCDAGWCVRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETILLDRLTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDRIWQIKPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDADVDFVQGFCFGRPAPSLEHARRAAPARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTSPIVRRVFVAEANGEQVEPSVTIETPDAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDFSSYGDGR
>NZ_CP010973.1|WP_004193488.1|1390058_1390463_+|aminoacyl-tRNA-hydrolase
MTLRYAFSPDEVELTAVRAQGAGGQNVNKVSSAIHLRFDIRASSLPDDVKARLFARADQRITREGVIVIKAQEYRTQEKNRAAALARLDTLIRSAGVTPRKRVATRPTRASKERRLAEKGRRSEVKSGRGRVVE
>NZ_CP010973.1|WP_004547698.1|1387365_1390062_+|AAA-family-ATPase
MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVALRALAQRYDEPYDDVRAALAASGVTAFDGIVRGGECPLVVDRDGRLYLARYFEYETRLANALVERSRCGGAPAGGADALSPDALGERLVRYFGPQKERGVDWQRVAALIALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPELRIALAAPTGKAAQRMQEALHARAGSLPAELAARLPRTSCTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPNARLVLLGDKDQLAAVEAGAVFAELSARPAFSPATCATIARALGVGEAEFVAALPDGFVVQAAGAERVADARAAAADMDAAARGTAGAAAAAARATAAAAARMTTAAAAARGGAPESAAQRAPAPHAGRRGGGRASNRTVDDAQGSLFAFDDDAFGVGTSGGEPGAGAQGAGRRDGGAPSPDGPHAGRRDGGASPGVAHSRRDAFDARARSGPADVSDLENAARAYAPAGAAGPADSPADASFVEPAAWIEADELAWLDNAVFSFSEGASANAEADGRRSAAATATDAGARTAPPVAREATAPTPRETARSDGSAVAPLTDCVVWLERNYRFGLDSPIGRLSLAIRRGAVQDALDALSTQDDAAARFSDDGGATLSAATVEQLARGFAGYAAALRDALATPEPDALPLFDVLNRFRVLCATRTGARGAEEVNARMAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWFRGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELVYTAITRARARVQVIGSRAVLALAIATRTARDSGLAARIADALRARQEGAR
>NZ_CP010973.1|WP_045243379.1|1383556_1387369_+|exodeoxyribonuclease-V-subunit-beta
MSHVAPSGPSASELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALDTGDDGGDPFIARLFETTLAPERGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDGALRFELAADFWRTRVEPVAAAYPAFAEWLVEYGAGPAALDAQLARRLKKPLARLRWDGLHAADDGAESAARAHFDTAAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKLTQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDAAPAELAQRKRTRRVVSFDDLLANLYRALDAHPWLRETLRARYPAALIDEFQDTDPLQFAIFDTIFAPAGPLFLVGDPKQAIYSFRAADLHTYLAARARASARYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVRAGSRGRAPLVDATDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAASGIAVLVQTHRQGSLVKRVLAAWGIGSVELAQASVFATIDAEQLERVLAAIDAPGDLRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPADADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHDESGCAVLHYGCDDEAAERASREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDESGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHRYLRVRMRGYDYDAHIAGYLYVFVRGVRPDWRNDGASAGVHARRPARALIEALDALMREGDA
>NZ_CP010973.1|WP_004534542.1|1380215_1383560_+|exodeoxyribonuclease-V-subunit-gamma
MLHLFYSNRHETLADALLDDLAFASDGAGPWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLAQWLWAQIGEVLTVPAHSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTYRPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLREARAFDPDVIARARVKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDIVTAARAESLDAADRLDYQEVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYADNPAPTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPCLAPSDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPERDVGAPELVEWLRADAVAARYGIDATALETVQTWLAASGARRGLAPDAAEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTDDLDGFARRIARDLTPQGWGDVFADALARFFDSGPAVADALSGVRDALDAMLAAMAEGAAGAALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLARADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDELLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLLAEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVDTEPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASPEVPGGATGAVRRDHALDALAQLAGNVRRALADGATRVPFAFDVAPAWPAAGDARWFGEHDAALAAAATREPLRLHGALARLTAAGQVIYRYARPGARDYLAAWLAHLVYCAIDPGGPRRTLWFGSGDTFEFAPVAAPLEQLAPLAALFRAGRRMPLAFFPRSAWALVSESESKAAGVWINDRVAGEADDASLALAWRGANPSLDEPFGALAHLVFDPLVEHLRRAS
>NZ_CP010973.1|WP_004534567.1|1377356_1379633_-|hypothetical-protein
MRYSVEIRKFFYSQYFFGGLRIALGVSLPAVLSLAVLHDRELGFTIATGALGACVVDMPGPLKYKHNEMLACSVIGFFSALATGLATPNIFALWLTIVPLTFALSLIVVYGNRWPQISFATLFMMVMTLEEKFTPLQALVNASWILAGGLWYTYWATIVSRWQARRIEQQALAESLFACASYLLARADFYDLDADLDECYRNLVARQITAVETQETARDIVLRNLPKLRRGKLDPGRTMMFNLFINSVDLHEMFVGAHTDYPLVRSTFGGSDLMIFYRDLIRKAAADLEEIGFAVLENRLPHSRISVKAELRAIEYEIELMRKKQFAATHPEAYAAVLATFRRIWSATRLIDKMRRNLSGSADAQRTELKIDKALTRFLQKRRMSPLLIFSNLNMGSPSLRHALRVTIAVAVGFWLGRLLPLTNAYWIVMTSIIILKPGYSLTKQRNAQRIVGTLIGCAASLALIYTVHEPHVLIAIMFGSMVMSYSLLLFNYAASVVFTSSYVLLLFHLLAPGNMRIIGERAIDTVVGCMIAIAASRLFPYWEYRAIGKLVADALATTRKYFEATWRAGRGKAAPAVPAADGAAAVPAVAAVVDAVAPGLDGDYQYRLARKNVHIAFANLGQAFQRMMLEPKAHQKFVPELNDLLVQTHVLGAQITAAAPLLRHACEQGNPPALERGMAAVREHLEQAEAGVPPPANQAETSKQLTRELDSMVVDAERSDAGADLAHDLKVLAHQCKQMLASSLLIRKDASVIRLPE
>NZ_CP010973.1|WP_004192878.1|1377168_1377360_-|hypothetical-protein
MSRPPPPFLSTVSRRARTQGFPDYCPRASIGMIYPAPSCLYNFSSASAGPHRPADDTNHSETR
>NZ_CP010973.1|WP_004526507.1|1375807_1377172_-|amino-acid-permease
MKNLQRHLSARHIRFLALGSAIGTGLFYGSASAIRLAGPAVILAYIVGGAAVYMVMRALGEMAVREPVPGSFGHYATENLGPFAGFVTGWTYTLEMVIVAIADITAFGIYMGFWFPHVPQWIWVLAIVAIICGLNLCHVKVFGELEFWLSIVKVGAIVAMIGGGAAILFTGMRLGSGGAPSLANLWSHGGFLPNGVGGLVASLSVVIFAYGGIEVIGMSAGEAKEPERAIPRAINAVPMRILLFYVLTMIVLMSIFPWTGVGANGSPFVQIFSALGVRSAAEILNLVVISAAISAINSDIFGAGRMMYAMALQGQAPRALAAMSARGVPWVTVLVMAGALLVGVVLNYLMPKDVFLMVAASATFATVWVWLMILLSQVAMRRRLGAAEVAALKFKVPFWPVGPALTIAFMAFVIAMLGYFDDTRVALFVGAAWLAILALVFYTRIRPRLAAVAR
>NZ_CP010973.1|WP_004193167.1|1375486_1375666_+|hypothetical-protein
MNDPRSKKNPVFGVAILIVVVIALVIGTILYNAISQKHEYDEAHPHAASAASAASAQHG
>NZ_CP010973.1|WP_004191162.1|1375370_1375490_+|hypothetical-protein
MRIARKKTDESRRAQRTAVRMRLRVECRLDEFLMERDRR
>NZ_CP010973.1|WP_004545149.1|1393123_1394056_-|DMT-family-transporter
MNLKNALLLIVLAALWGASFLFIRVGVAEFGVAPLMALRVGIGALFLVALMLTRYAPRELIALLRQHARPLFVVGLLNSAAPFCLFAFAELTLSAGVTSVINATTPLWGALVAYLWLKDSLSLPRALGLVIGFAGVLTLVWDQVFSPHGANPASPATAALAAAAALGATLLYGIAANFTKRKLTGVDPLVSATGSMVGATILLLPFALATWPAAPVSAHAWGSVLALGIACTGVAYFIFFHLIAHIGPARAITVTFVIPVFGILWGALFLGERVSFAMLEGCVIVLLGTALATGAIRRIPGVRPQRNEAA
>NZ_CP010973.1|WP_004191983.1|1394305_1394530_-|lipoprotein
MNKTLVAAALASVALAGCYYPYGYYPASGYYAAPVQTAPVYVAPAYPAYYYPAPSLSLNFGYWSGGGRGYWRHH
>NZ_CP010973.1|WP_004193128.1|1394781_1394994_-|glycine-zipper-2TM-domain-containing-protein
MKSIRRIGVCAMLIATMASLSACDTMTTRQRNAAIGAGIGGVAGAAIGGNALSTIGGAAAGGLVGSQVGK
>NZ_CP010973.1|WP_004521865.1|1395217_1397149_-|phosphomethylpyrimidine-synthase-ThiC
MNANPKFLSADARVDAAAVAPLPNSRKVYVTGSQPDIRVPMREITQADTPTSFGGEKNPPIYVYDTSGPYTDPDAKIDIRAGLPALRQRWIDARGDTETLAGLTSDYGRERAADPATAELRFPGLHRHPRRAKAGKNVTQMHYARQGIITPEMEYIAIRENQRRAEYLESLKASGPNGAKLAAMMGRQHAGQAFGAAAFGANAPAEITPEFVRDEVARGRAIIPANINHPETEPMIIGRNFLVKINANIGNSAVTSSIGEEVDKMTWAIRWGGDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVNGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVRLQYVPLTANRMTGIVSRGGSIMAKWCLAHHKESFLYEHFEEICEIMKAYDVSFSLGDGLRPGSIYDANDEAQLGELKTLGELTQIAWKHDVQVMIEGPGHVPMQLIKENMDLQLDWCKEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLGLPNKDDVKEGIITYKLAAHAADLAKGHPGAQVRDNALSKARFEFRWQDQFNLGLDPDKAREFHDETLPKDSAKVAHFCSMCGPHFCSMKITQDVREFAAQQGVSENDALKKGMEVKAVEFVKSGSEIYHRQ
>NZ_CP010973.1|WP_004193339.1|1397788_1398094_+|pentapeptide-MXKDX-repeat-protein
MKRNLIAFACVAGFALAAPFAHAQNDAMSKDGMGMSKDAMSKGAMSGDAMSKDAMSKDAMSKDRMGKRHDHMAKGGMKAGPMSKDAMKEPMSSDKMSPMSN
>NZ_CP010973.1|WP_004195184.1|1398254_1399079_+|DUF1223-domain-containing-protein
MSTDMSISFSVSLRAVAAALSLAAAGAAQAAADGACMARSPDGRQALVELYTSEGCSSCPPADDWLARLAARRAALRVVPLALHVDYWDGLGWADRFAQHRFTERQHALAARGGGRFVYTPEVAVDGRELRDWRDADAFGRRVVATAAEPARVGIALAAKRRAGALDVALSVTPRVGAPRALDAYLALYENGVESQVRAGENRGATLRHERVVRQWIGPLAATADAHASLDVRRALPLPANLRAADAARYGVAAFVEDPATGDVLQALDLPLCG
>NZ_CP010973.1|WP_009941946.1|1399069_1400206_+|cytochrome-b/b6-domain-containing-protein
MRLNDARAIDQRTRVSPMSATPTTSASTTAMAGARASGAADAPARAPTGADVDAGATAWADATANATANATTDPTIDATADATTDAMANVTTDAATRVTANPPIHETANVPASTAAAATTEAVAGARAGAALDAAHPGATQTMSQTMSQTMAQTMTQAGTEAASPAGTDAAASGACITRATRARRPIHPLWVRASHWLNALAAVTMALSGWRIYNASPIYAGFVFPRGATLGGWLGGALQWHFAAMWLLFFNGVFYLTMGVATRRFTRKLLPLSASGVARDLRDALRGRLSHDDLSVYNALQRAAYVAAIADLALLVLSGLVIWKSVQFPLLREWLGGYDRARVVHFWAMAFLVAFFVVHVAMAALVPRSLLAMLRGH
>NZ_CP010973.1|WP_004526525.1|1400221_1401013_+|molybdopterin-dependent-oxidoreductase
MSENDRKKRENDIARIDRASLLIDVRKSLALPSRRLFGKRMLTLGGLAMLTGCTLRDDASVDDFLEKVSRANDRVQAWLFGPTRLAPTYAEADITRPFPFNAFYGIDEVPRVDADGFRLAVSGLVTGQRSWSLPALYALPHAEQITRHICVEGWSAIGRWGGTPFREFLRRVGADTSAKYVGFKCADDYYESIDMATALHPQTLLAFEYDGKRLPPEYGFPMKLRMPTKLGYKNPKHIVEIFVTNAYPGGYWVDQGYNWFGGS
>NZ_CP010973.1|WP_004192284.1|1401445_1402381_+|EamA-family-transporter
MTPFDRFLAFVARHPPRLPQSRSGRVALALVFIYFAWGSTYLALHVALESFPPLLLSGLRNLLAGVGLFVFAMRRRPVRPTLVEIRNAALVGTMLVTMSSGLIALGMRTVSSGSAAVMVATVPLFATVIASVAGRRVTGGEWGAVALGMVGIVVLNSGGPSSPGSTLGSITVLAGALFWAGGAHLAARLALPHDLFLSTALQIGLGGAASTCIAWVLGERIGHVAWVPGAAFVYLMLAGTMAAYVAYGYLIRHTSPIIASSCMYVNPVVAVALGALLLGEPVTAATVIATIAILGSVGLSFVFDPARRRAQ
>NZ_CP010973.1|WP_004193486.1|1402756_1403953_-|MFS-transporter
MSSQPRHSAGTPGHYSRSLLLLLATIAGVSVANIYYNQPLLDAFRASFPGSASWIGVVPTATQLGYATGMLVLAPLGDRFDRRTLILLQIAGLSAALVVAAAAPTLGVLAAASLAIGILATIAQQAVPFAAEIAPPAARGQAVGTVMSGLLLGILLARTAAGFVAEYFGWRAVFAASVAALAALAAVIVARLPRSSPTSTLPYGKLLASMWQLVRELRGLREASMTGGAIFAAFSAFWPVLTLLLAGAPFHLGPQAAGLFGIVGAAGALAAPYAGRFADKRGPRAIISLAIALIAASFAIFALSGASLIGLVIGVIVLDVGVQAAQISNQSRIYALKPDARSRVNTVFMVCYFIGGAIGSSAGVAAWRATGWLGMCAVGLLFSIVAAIVHFRGGAGAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010973_1	1.1\|608470\|30\|NZ_CP010973\|PILER-CR	608470-608499	30	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	33342-33371	5	0.833
NZ_CP010973_1	1.1\|608470\|30\|NZ_CP010973\|PILER-CR	608470-608499	30	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	104466-104495	5	0.833
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP023712	Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence	21498-21531	6	0.824
NZ_CP010973_1	1.1\|608470\|30\|NZ_CP010973\|PILER-CR	608470-608499	30	NZ_LR134447	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence	42857-42886	7	0.767
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	201578-201611	7	0.794
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP019879	Komagataeibacter nataicola strain RZS01 plasmid pKNA04, complete sequence	10179-10212	7	0.794
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP019879	Komagataeibacter nataicola strain RZS01 plasmid pKNA04, complete sequence	29512-29545	7	0.794
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	41075-41108	7	0.794
NZ_CP010973_1	1.1\|608470\|30\|NZ_CP010973\|PILER-CR	608470-608499	30	NZ_CP034650	Xanthomonas vasicola strain NCPPB 1060 plasmid pXVH29, complete sequence	5173-5202	8	0.733
NZ_CP010973_1	1.1\|608470\|30\|NZ_CP010973\|PILER-CR	608470-608499	30	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	457347-457376	8	0.733
NZ_CP010973_1	1.1\|608470\|30\|NZ_CP010973\|PILER-CR	608470-608499	30	NZ_CP025432	Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence	33590-33619	9	0.7
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NC_014642	Achromobacter xylosoxidans A8 plasmid pA82, complete sequence	132288-132321	9	0.735
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP033971	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed2, complete sequence	321080-321113	10	0.706
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1019267-1019300	10	0.706
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP024895	Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence	285348-285381	10	0.706
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP023779	Nocardia terpenica strain NC_YFY_NT001 plasmid p_NC_YFY_NT001, complete sequence	55545-55578	11	0.676
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	920944-920977	11	0.676
NZ_CP010973_1	1.2\|608521\|34\|NZ_CP010973\|PILER-CR	608521-608554	34	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	920934-920967	11	0.676

1. spacer 1.1|608470|30|NZ_CP010973|PILER-CR matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.833

gcggtt--acggcggcggccgggacatggagc	CRISPR spacer
--ggttcgccggcggcggccggaagatggagc	Protospacer
  ****   *************.* *******

2. spacer 1.1|608470|30|NZ_CP010973|PILER-CR matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.833

gcggttacggcggcggccgggacatggagc-	CRISPR spacer
gcggttgcggcggcggtcgggac-cggggcg	Protospacer
******.*********.****** .**.**

3. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP023712 (Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.824

cgtgcgtcgggtggcggcggcgcgggtgcgcgca-	CRISPR spacer
ggtgcggcgggtgccggcggcgcgggag-gcgccc	Protospacer
 ***** ****** ************ * ****

4. spacer 1.1|608470|30|NZ_CP010973|PILER-CR matches to NZ_LR134447 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence) position: , mismatch: 7, identity: 0.767

gcggttacggcggcggccgggacatggagc	CRISPR spacer
gcggtgacggcggcgaccgggacgacgccc	Protospacer
***** *********.*******.  *  *

5. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgcgtcgggtggcggcggcgcgggtgcgcgca	CRISPR spacer
cggggcgcgggtggcggtggcgcgggcgcgcgcg	Protospacer
** *   **********.********.******.

6. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP019879 (Komagataeibacter nataicola strain RZS01 plasmid pKNA04, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgcgtcgggtggcggcggcgcgggtgcgcgca-	CRISPR spacer
ggtgcgtcgggtggcgatggcgcggg-acgggctt	Protospacer
 ***************..******** .** **

7. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP019879 (Komagataeibacter nataicola strain RZS01 plasmid pKNA04, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgcgtcgggtggcggcggcgcgggtgcgcgca-	CRISPR spacer
ggtgcgtcgggtggcgatggcgcggg-acgggctt	Protospacer
 ***************..******** .** **

8. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

cgtgc-gtcgggtggcggcggcgcgggtgcgcgca	CRISPR spacer
-gtgtgggcgggtgccggcggcgcggatgcgctcc	Protospacer
 ***. * ****** ***********.***** *

9. spacer 1.1|608470|30|NZ_CP010973|PILER-CR matches to NZ_CP034650 (Xanthomonas vasicola strain NCPPB 1060 plasmid pXVH29, complete sequence) position: , mismatch: 8, identity: 0.733

gcggttacggcggcggccgggacatggagc	CRISPR spacer
tgatttacggcggcggcggcgacatggatt	Protospacer
  . ************* * ******** .

10. spacer 1.1|608470|30|NZ_CP010973|PILER-CR matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 8, identity: 0.733

gcggttacggcggcggccgggacatggagc	CRISPR spacer
gcggttacggcggcgggcgggcggctggtc	Protospacer
**************** ****  .. *. *

11. spacer 1.1|608470|30|NZ_CP010973|PILER-CR matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 9, identity: 0.7

gcggttacggcggcggccgggacatggagc	CRISPR spacer
cgttttacggcggcggcggcgacatggccg	Protospacer
    ************* * *******

12. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NC_014642 (Achromobacter xylosoxidans A8 plasmid pA82, complete sequence) position: , mismatch: 9, identity: 0.735

cgtgcgtcgggtggcggcggcgcgggtgcgcgca	CRISPR spacer
cgccgctccggtggcggcgtcgcgggtgcgcagg	Protospacer
**.   ** ********** ***********. .

13. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP033971 (Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

cgtgcgtcgggtggcggcggcgcgggtgcgcgca	CRISPR spacer
ggttcgtcgggtggcggcggctcgggcggaacgg	Protospacer
 ** ***************** ****.* .   .

14. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.706

cgtgcgtcgggtggcggcggcgcgggtgcgcgca	CRISPR spacer
ggtgcggcgggcggcggcggcgcggcctctgcct	Protospacer
 ***** ****.************* . *   *

15. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP024895 (Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cgtgcgtcgggtggcggcggcgcgggtgcgcgca	CRISPR spacer
ctatcccggggtggcggcgacgcgggagcgcggc	Protospacer
*   * . ***********.****** *****

16. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP023779 (Nocardia terpenica strain NC_YFY_NT001 plasmid p_NC_YFY_NT001, complete sequence) position: , mismatch: 11, identity: 0.676

cgtgcgtcgggtggcggcggcgcgggtgcgcgca	CRISPR spacer
tcaccgtagggtggcggcggcgcggctgtcgggg	Protospacer
.   *** ***************** **.  * .

17. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.676

cgtgcgtcgggtggcggcggcgcgggtgcgcgca	CRISPR spacer
ggtgcggcgggcggcggcggcgcggcctttgcct	Protospacer
 ***** ****.************* . .   *

18. spacer 1.2|608521|34|NZ_CP010973|PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.676

cgtgcgtcgggtggcggcggcgcgggtgcgcgca	CRISPR spacer
ggtgcggcgggcggcggcggcgcggcctttgcct	Protospacer
 ***** ****.************* . .   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

128696 : 219505

Burkholderia_phage(80.0%)

protease,portal,plate,capsid,tail,tRNA,head,terminase,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024431929.1\|128696_129788_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	2.4e-191	91.7
WP_004523107.1\|129861_130146_-	hypothetical protein	NA	NA	NA	NA
WP_004200731.1\|130142_130625_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_004553744.1\|131162_132167_-	hypothetical protein	NA	NA	NA	NA
WP_154218334.1\|132268_132637_-	hypothetical protein	NA	NA	NA	NA
WP_004200732.1\|133045_133450_+	PaaI family thioesterase	NA	NA	NA	NA
WP_004189208.1\|133487_134357_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_004525849.1\|134477_135494_-	D-2-hydroxyacid dehydrogenase family protein	NA	NA	NA	NA
WP_004189230.1\|135932_136988_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004525850.1\|137212_139822_-	DNA topoisomerase III	A0A2P1ELA0	Moumouvirus	7.7e-18	25.7
WP_004190199.1\|140032_140404_-	thioredoxin family protein	NA	NA	NA	NA
WP_004553745.1\|140463_141654_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.0e-21	39.2
WP_004525852.1\|141882_142386_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	2.1e-12	34.3
WP_004525853.1\|142417_143401_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.3e-07	38.0
WP_004525854.1\|143521_144157_+	LysE family translocator	NA	NA	NA	NA
WP_004189409.1\|144266_145124_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_004523097.1\|145571_146981_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_004188929.1\|146977_147568_+	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_004523096.1\|147569_149978_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_004189647.1\|149978_150662_+	response regulator	NA	NA	NA	NA
WP_076836148.1\|151689_152031_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014696807.1\|152731_155524_-	hypothetical protein	K4NXL6	Burkholderia_phage	0.0e+00	100.0
WP_004524471.1\|155535_155790_-	hypothetical protein	K4NZY7	Burkholderia_phage	4.5e-40	100.0
WP_004531070.1\|155786_156146_-	hypothetical protein	K4NXB4	Burkholderia_phage	1.1e-60	100.0
WP_004524469.1\|156148_156355_-	hypothetical protein	K4NZT3	Burkholderia_phage	2.7e-35	100.0
WP_004531069.1\|156523_156763_-	hypothetical protein	K4PAZ5	Burkholderia_phage	1.4e-35	100.0
WP_004524467.1\|156766_156961_-	hypothetical protein	K4NXL1	Burkholderia_phage	1.6e-26	100.0
WP_004524466.1\|157004_157202_-	hypothetical protein	K4NZY3	Burkholderia_phage	1.6e-29	100.0
WP_004549898.1\|157207_157426_-	hypothetical protein	K4NXB1	Burkholderia_phage	1.1e-34	100.0
WP_004524465.1\|157441_157987_-	Bro-N domain-containing protein	K4NZS9	Burkholderia_phage	7.8e-98	100.0
WP_004549899.1\|158072_158321_-	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	3.0e-41	100.0
WP_004549900.1\|158308_158605_-	phage DNA-binding protein	E5E3P2	Burkholderia_phage	5.4e-37	84.3
WP_004531068.1\|158608_158845_-	hypothetical protein	K4NZX7	Burkholderia_phage	2.4e-35	100.0
WP_004549901.1\|158928_159387_+	helix-turn-helix transcriptional regulator	K4NXA8	Burkholderia_phage	5.2e-79	100.0
WP_004549902.1\|159439_160162_+	hypothetical protein	K4NZS4	Burkholderia_phage	1.1e-126	100.0
WP_004549903.1\|160596_161028_+	hypothetical protein	A0A089FKT7	Burkholderia_phage	8.6e-76	100.0
WP_004552642.1\|161041_162142_-	phage late control D family protein	K4PAY4	Burkholderia_phage	3.6e-203	100.0
WP_004524457.1\|162141_162567_-\|tail	phage tail protein	K4NXK5	Burkholderia_phage	1.2e-72	100.0
WP_004555835.1\|162584_165545_-	hypothetical protein	K4NZX3	Burkholderia_phage	0.0e+00	100.0
WP_004552648.1\|165547_165661_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-14	100.0
WP_004531064.1\|165669_166014_-\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	1.0e-55	100.0
WP_004524455.1\|166071_166581_-\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	4.9e-94	100.0
WP_014696808.1\|166596_167769_-\|tail	phage tail sheath protein	K4PAY0	Burkholderia_phage	1.5e-223	100.0
WP_004531062.1\|167824_168496_-\|tail	phage tail fiber assembly protein	K4NXJ9	Burkholderia_phage	3.0e-115	100.0
WP_038803061.1\|168512_170876_-	phage Tail collar domain protein	K4NZW8	Burkholderia_phage	0.0e+00	100.0
WP_004531060.1\|170886_171441_-\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	2.2e-100	100.0
WP_004531059.1\|171433_172339_-\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	3.0e-163	100.0
WP_004531058.1\|172335_172698_-\|plate	bacteriophage baseplate assembly protein W	K4PAX6	Burkholderia_phage	1.7e-61	100.0
WP_004531057.1\|172694_173375_-\|plate	phage baseplate assembly protein V	K4NXJ5	Burkholderia_phage	3.0e-123	100.0
WP_004531056.1\|173548_174325_+	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	1.6e-149	100.0
WP_009897040.1\|174490_175021_-	hypothetical protein	K4NX96	Burkholderia_phage	3.0e-94	100.0
WP_004531055.1\|175147_175615_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.2e-78	100.0
WP_004531054.1\|175611_176028_-\|tail	phage tail protein	A4JWT7	Burkholderia_virus	3.3e-72	100.0
WP_009971799.1\|176132_176573_-	bacteriophage protein	K4NXJ2	Burkholderia_phage	3.8e-71	100.0
WP_004531051.1\|176569_177382_-	DUF3380 domain-containing protein	K4NZW0	Burkholderia_phage	1.2e-150	100.0
WP_004524440.1\|177378_177651_-\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_004524439.1\|177652_177997_-	membrane protein	K4NZQ3	Burkholderia_phage	2.9e-50	100.0
WP_004524438.1\|178011_178218_-\|tail	tail protein	K4PAW7	Burkholderia_phage	2.4e-31	100.0
WP_004524437.1\|178214_178466_-	hypothetical protein	K4NXI9	Burkholderia_phage	7.6e-40	100.0
WP_004531050.1\|178465_178945_-\|head	head completion/stabilization protein	K4NZV5	Burkholderia_phage	5.8e-81	100.0
WP_004531049.1\|179044_179734_-\|terminase	terminase endonuclease subunit	K4NX86	Burkholderia_phage	2.5e-117	100.0
WP_004531048.1\|179730_180744_-\|capsid	phage major capsid protein, P2 family	K4NZP8	Burkholderia_phage	7.2e-190	100.0
WP_004552664.1\|180777_181587_-\|capsid	GPO family capsid scaffolding protein	K4PAW2	Burkholderia_phage	4.2e-148	100.0
WP_004531046.1\|181730_183500_+\|terminase	terminase ATPase subunit family protein	K4NXI4	Burkholderia_phage	0.0e+00	100.0
WP_004531045.1\|183496_184552_+\|portal	phage portal protein	K4NZV0	Burkholderia_phage	4.0e-207	100.0
WP_004524431.1\|184658_184931_+	BrnT family toxin	K4NX81	Burkholderia_phage	1.0e-45	100.0
WP_004524430.1\|184890_185163_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	6.3e-48	100.0
WP_004554069.1\|185774_186131_-	hypothetical protein	A0A089GLD7	Burkholderia_phage	1.3e-37	100.0
WP_004531044.1\|186413_187115_-	hypothetical protein	A0A089FKS8	Burkholderia_phage	1.0e-134	100.0
WP_004554070.1\|187360_187834_-	DUF4065 domain-containing protein	K4NZT7	Burkholderia_phage	2.8e-88	100.0
WP_004190026.1\|188767_189502_+	7-cyano-7-deazaguanine synthase QueC	A0A1B0Z0B4	Vibrio_phage	1.6e-50	42.5
WP_004189241.1\|189595_190228_+	7-carboxy-7-deazaguanine synthase	R4TAH8	Halovirus	2.1e-06	30.9
WP_004189793.1\|190247_190700_+	6-carboxytetrahydropterin synthase QueD	A0A088FAL2	Vibrio_phage	7.6e-14	30.8
WP_045243345.1\|191121_191907_+	hypothetical protein	NA	NA	NA	NA
WP_004523094.1\|191903_192680_+	sel1 repeat family protein	NA	NA	NA	NA
WP_004525857.1\|193015_194164_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_045243346.1\|194175_196587_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_004523092.1\|196770_197283_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_004189331.1\|197279_198353_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_004189550.1\|198472_199516_-	rod shape-determining protein	NA	NA	NA	NA
WP_004189769.1\|199881_200181_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_004525859.1\|200293_201784_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_004523090.1\|201786_203259_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_004523089.1\|203385_204225_+	polyphosphate kinase	NA	NA	NA	NA
WP_004190029.1\|204256_205027_+	exodeoxyribonuclease III	R4TWA8	Phaeocystis_globosa_virus	3.4e-30	33.8
WP_004525861.1\|205337_206402_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.3e-80	45.8
WP_004531039.1\|206613_207558_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004534253.1\|207931_208984_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_004523086.1\|208973_210287_-	AmpG family muropeptide MFS transporter	NA	NA	NA	NA
WP_004545692.1\|210298_210913_-	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_004545672.1\|210909_212055_-	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_004525865.1\|212403_213096_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_009951681.1\|213062_213866_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_004200214.1\|213862_214762_-	acetylglutamate kinase	NA	NA	NA	NA
WP_004198312.1\|215086_215338_+	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_004525866.1\|215355_216636_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_004198315.1\|216655_217198_+	response regulator transcription factor	NA	NA	NA	NA
WP_004523084.1\|217615_218959_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	5.3e-39	28.4
WP_004203414.1\|218968_219505_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_2

970220 : 981178

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197486.1\|970220_972335_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7
WP_004526282.1\|972635_973145_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	4.2e-13	42.2
WP_071810810.1\|973336_973555_-	hypothetical protein	NA	NA	NA	NA
WP_004189780.1\|973817_974396_-	pseudouridine synthase	NA	NA	NA	NA
WP_004189552.1\|974663_975923_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189626.1\|975895_976078_-	hypothetical protein	NA	NA	NA	NA
WP_038716055.1\|976090_977701_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|977830_978034_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004194131.1\|978566_978881_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196461.1\|978877_981178_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1

DBSCAN-SWA_3

1523164 : 1529138

Burkholderia_phage(33.33%)

integrase

attL 1510560:1510575|attR 1530976:1530991

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1510560:1510575	attL	NA	NA	NA	NA
WP_076853114.1\|1523164_1523434_+	CopG family transcriptional regulator	A0A0A8JBA5	Ralstonia_phage	5.3e-23	58.6
WP_076853128.1\|1523782_1524004_-	DNA-binding protein	NA	NA	NA	NA
WP_038715417.1\|1524257_1524728_+	hypothetical protein	NA	NA	NA	NA
WP_038715415.1\|1524762_1525782_-\|integrase	site-specific integrase	A0A0A1I5U0	Burkholderia_phage	2.1e-48	38.2
WP_071810706.1\|1525955_1526384_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5NNJ1	Burkholderia_phage	4.6e-21	47.4
WP_038723435.1\|1526561_1527263_-	LysR family transcriptional regulator	A4PE26	Ralstonia_virus	7.8e-34	42.7
WP_038777473.1\|1527265_1527868_-	hypothetical protein	NA	NA	NA	NA
WP_045243382.1\|1528209_1528713_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	8.7e-19	38.7
WP_045243383.1\|1528715_1529138_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.1e-13	46.0
1530976:1530991	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2403387 : 2411578

Ralstonia_virus(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004527232.1\|2403387_2404497_+	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	3.1e-37	31.6
WP_004193371.1\|2404691_2405315_+	phospholipase D family protein	NA	NA	NA	NA
WP_004193710.1\|2405441_2405624_-	hypothetical protein	NA	NA	NA	NA
WP_004550288.1\|2406562_2407024_+	avidin	NA	NA	NA	NA
WP_004527234.1\|2407099_2407333_+	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_004531416.1\|2407368_2407596_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_009937072.1\|2407849_2408245_+	hypothetical protein	NA	NA	NA	NA
WP_004527236.1\|2408525_2408951_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_004527237.1\|2408947_2409454_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	5.1e-19	40.1
WP_038763587.1\|2409795_2410398_+	hypothetical protein	NA	NA	NA	NA
WP_004534826.1\|2410404_2411130_+	hypothetical protein	A4PE26	Ralstonia_virus	1.7e-31	43.5
WP_004535518.1\|2411314_2411578_-	hypothetical protein	Q8W6S4	Burkholderia_virus	5.0e-26	85.5

DBSCAN-SWA_5

2925707 : 2934515

Tanapox_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038715033.1\|2925707_2926550_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	2.7e-17	26.6
WP_038715031.1\|2926892_2927816_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.4e-43	36.2
WP_038732146.1\|2927994_2929266_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004550116.1\|2929492_2930395_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	3.3e-53	39.9
WP_004189725.1\|2930719_2931037_-	competence protein ComE	NA	NA	NA	NA
WP_045243436.1\|2931108_2932101_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	6.9e-28	30.9
WP_009921652.1\|2932159_2933083_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004527508.1\|2933114_2934515_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.1e-79	38.5

DBSCAN-SWA_6

3269784 : 3279029

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522151.1\|3269784_3271332_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2
WP_004194373.1\|3271368_3271896_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004532195.1\|3271892_3272576_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194137.1\|3272640_3273456_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_004194350.1\|3273639_3275646_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	9.7e-53	35.0
WP_004522147.1\|3275679_3276810_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.6
WP_004194034.1\|3277076_3279029_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_7

3563178 : 3617384

Burkholderia_phage(44.44%)

plate,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004521984.1\|3563178_3564477_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004527811.1\|3564543_3565626_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_004534980.1\|3565669_3566527_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_004186955.1\|3566606_3566915_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_004521981.1\|3566929_3567526_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_004521980.1\|3567809_3568598_+	dioxygenase	NA	NA	NA	NA
WP_004527813.1\|3569074_3570676_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|3571109_3571313_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_004198058.1\|3571499_3572762_-	Hsp70 family protein	NA	NA	NA	NA
WP_004198059.1\|3573433_3574039_-	nitroreductase family protein	NA	NA	NA	NA
WP_004535766.1\|3574000_3574576_+	hypothetical protein	NA	NA	NA	NA
WP_004535445.1\|3574535_3575819_-	MFS transporter	NA	NA	NA	NA
WP_004534987.1\|3575977_3576622_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004527819.1\|3576959_3577583_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_004555449.1\|3577674_3578571_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004535007.1\|3578698_3579835_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004547585.1\|3579811_3580117_+	hypothetical protein	NA	NA	NA	NA
WP_038715107.1\|3580191_3581310_-	acyltransferase	NA	NA	NA	NA
WP_004527823.1\|3581308_3581788_+	hypothetical protein	NA	NA	NA	NA
WP_004199982.1\|3581747_3582251_-	lipoprotein	NA	NA	NA	NA
WP_004204896.1\|3582854_3585020_+	peptidase	A0A0P0IY26	Acinetobacter_phage	1.9e-46	27.1
WP_076873039.1\|3585601_3586000_+	hypothetical protein	NA	NA	NA	NA
WP_004185238.1\|3586075_3586312_+	hypothetical protein	NA	NA	NA	NA
WP_004204906.1\|3586414_3586645_+	hypothetical protein	NA	NA	NA	NA
WP_076839825.1\|3586878_3587235_-	hypothetical protein	NA	NA	NA	NA
WP_004199991.1\|3587260_3588529_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004521963.1\|3588543_3590805_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_004527831.1\|3590801_3592250_+	TolC family protein	NA	NA	NA	NA
WP_004521960.1\|3592459_3593428_-	hypothetical protein	NA	NA	NA	NA
WP_004199998.1\|3593553_3594405_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_004200000.1\|3594555_3594669_+	hypothetical protein	NA	NA	NA	NA
WP_004527833.1\|3594676_3598570_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004200003.1\|3598566_3599556_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004527834.1\|3599560_3600493_+	OmpA family protein	NA	NA	NA	NA
WP_004527835.1\|3600691_3601813_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004521956.1\|3601902_3604572_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.7e-89	32.1
WP_004200010.1\|3604605_3605706_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004527836.1\|3605669_3607508_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004204912.1\|3607587_3608070_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004527837.1\|3608127_3608631_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004521953.1\|3608703_3610194_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004521952.1\|3610210_3610729_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004531875.1\|3610765_3611437_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521950.1\|3611811_3612426_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004521949.1\|3612534_3613881_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521948.1\|3613877_3614663_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004527840.1\|3614764_3615130_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	2.5e-52	88.4
WP_025988194.1\|3616151_3616634_-	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	5.0e-72	86.9
WP_004527843.1\|3616651_3617065_-\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	8.0e-71	100.0
WP_004527844.1\|3617057_3617384_-\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	6.6e-52	98.1

DBSCAN-SWA_8

3859287 : 3868175

Burkholderia_phage(20.0%)

integrase

attL 3859008:3859023|attR 3875025:3875040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3859008:3859023	attL	NA	NA	NA	NA
WP_024428549.1\|3859287_3859932_-	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	3.4e-07	30.5
WP_004525721.1\|3860832_3861081_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_004530408.1\|3861237_3862317_-	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_009932249.1\|3862316_3862769_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	2.3e-31	58.8
WP_009932250.1\|3863026_3863569_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.1e-47	55.8
WP_004530410.1\|3863822_3864740_-	DUF4935 domain-containing protein	A4PE40	Ralstonia_virus	4.0e-46	40.6
WP_009922658.1\|3864739_3865057_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	6.2e-15	57.0
WP_009932253.1\|3865064_3865385_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	1.0e-12	58.6
WP_038710463.1\|3865436_3866024_-\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	1.2e-43	50.0
WP_076804979.1\|3866195_3866375_+	hypothetical protein	NA	NA	NA	NA
WP_045243456.1\|3867035_3868175_+\|integrase	site-specific integrase	E7EJR3	Mycobacterium_phage	8.6e-06	26.3
3875025:3875040	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010974

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010974_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010974_1

106032-106096

Orphan

Consensus_repeat	Method
GGGCAGGATGCCACCGCGTCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010974_1

>merge|NZ_CP010974|1|106032-106096|CRISPRCasFinder
GGTCAGGATGCCACCGCGTCGGGCACATCAAGCACGGCAACGGGGCAGGATGCCGCCGCGTCGGG

>NZ_CP010974|1|1|106032-106096|CRISPRCasFinder
GGTCAGGATGCCACCGCGTCGGG	CACATCAAGCACGGCAACG
GGGCAGGATGCCGCCGCGTCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010974.1\|WP_004523700.1\|117249_117789_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|226047
NZ_CP010974.1\|WP_004547825.1\|115219_116896_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP010974.1\|WP_004524152.1\|95157_95421_+\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
NZ_CP010974.1\|WP_004533867.1\|109726_110272_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP010974.1\|WP_009945829.1\|101824_103282_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004529630.1\|106838_108290_-\|PhoPQ-regulated-protein	unknown	unknown	gnl\|CDD\|226737
NZ_CP010974.1\|WP_045243508.1\|98350_99082_-\|DUF2244-domain-containing-protein	unknown	unknown	gnl\|CDD\|378350
NZ_CP010974.1\|WP_004547810.1\|111186_113931_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP010974.1\|WP_162465357.1\|100971_101550_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004531579.1\|114527_115217_+\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|378275
NZ_CP010974.1\|WP_154220220.1\|103626_103986_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004523716.1\|99078_100674_-\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
NZ_CP010974.1\|WP_004529637.1\|113923_114496_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP010974.1\|WP_004537686.1\|93489_95148_+\|DUF2875-family-protein	unknown	unknown	gnl\|CDD\|288282
NZ_CP010974.1\|WP_004523708.1\|108361_108577_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004531587.1\|97072_97765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004529635.1\|110351_111074_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP010974.1\|WP_011326446.1\|108587_109142_-\|membrane-protein	unknown	unknown	gnl\|CDD\|284781
NZ_CP010974.1\|WP_004523721.1\|95835_96255_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_CP010974.1\|WP_004523720.1\|96274_96601_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245

Protein	Function_ID	Function_description	E-value
NZ_CP010974.1\|WP_004523720.1\|96274_96601_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	5.63925e-18
NZ_CP010974.1\|WP_004523700.1\|117249_117789_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|226047	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	7.24528e-84
NZ_CP010974.1\|WP_004524152.1\|95157_95421_+\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	6.77264e-23
NZ_CP010974.1\|WP_004529635.1\|110351_111074_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	6.76191e-96
NZ_CP010974.1\|WP_004529630.1\|106838_108290_-\|PhoPQ-regulated-protein	gnl\|CDD\|226737	COG4287, PqaA, PhoPQ-activated pathogenicity-related protein [General function prediction only].	0
NZ_CP010974.1\|WP_045243508.1\|98350_99082_-\|DUF2244-domain-containing-protein	gnl\|CDD\|378350	pfam10003, DUF2244, Integral membrane protein (DUF2244). This domain, found in various bacterial hypothetical and putative membrane proteins, has no known function.	5.42888e-38
NZ_CP010974.1\|WP_004547810.1\|111186_113931_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP010974.1\|WP_004531579.1\|114527_115217_+\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|378275	pfam09850, DotU, Type VI secretion system protein DotU. DotU is a family of Gram-negative bacterial proteins that form part of the membrane-joining complex of the type VI secretion system. DotU binds tightly to IcmF and together they are tethered to the inner membrane at one end and the peptidoglycan layer at the other; they interact with Lip1 which then tethers the peptidoglycan layer to the outer membrane.	1.02221e-28
NZ_CP010974.1\|WP_004523716.1\|99078_100674_-\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
NZ_CP010974.1\|WP_004533867.1\|109726_110272_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	6.50534e-21
NZ_CP010974.1\|WP_004547825.1\|115219_116896_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	6.5331e-35
NZ_CP010974.1\|WP_004529637.1\|113923_114496_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.61685e-22
NZ_CP010974.1\|WP_011326446.1\|108587_109142_-\|membrane-protein	gnl\|CDD\|284781	pfam07437, YfaZ, YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.	8.98696e-13
NZ_CP010974.1\|WP_004523721.1\|95835_96255_-\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	1.018e-53
NZ_CP010974.1\|WP_004537686.1\|93489_95148_+\|DUF2875-family-protein	gnl\|CDD\|288282	pfam11394, DUF2875, Protein of unknown function (DUF2875). This family of proteins with unknown function appear to be restricted to Proteobacteria.	0

>NZ_CP010974.1|WP_154220220.1|103626_103986_-|hypothetical-protein
MMNTPLSTRSTNFNSLVHRLTARLHALVTTRNSSGLLAWKTRDELERLFPAGTPMTHVGWRLGPPHQAVEYPGGCVTWIFLSNGQWLREPGRLLMWSAQTRSLRLTFDREQILTQMQLD
>NZ_CP010974.1|WP_009945829.1|101824_103282_-|hypothetical-protein
MPIRQTHIWIFGFVIACVLAMSGPLTYTFENTFQQTVDIDRKKQGTVAEATAFDARSAEQPSASDADRMHELPRIDAARSPTDHFDELPIHLAAFGGGEPSPSGPLPPGPLPDTSFAPFPFQHGFDTAIHAGPPIPAPPESTLARTDAPPRDETPFEPGMPQPSETVDTQLSFYADMVAQAIERTAYDSIALAKLDSDTTAPPDMTPERHDALANMNAPMFYADMLTASIHVPPSNDRTLSVPSLLTHQAIGIAWMELFARELPATATQAAPTRHAVSFAATLQAEPFDLAQWSEPDEAHSDGPPLELDGQRTIAPPYPRAGTLPPGTRPTYTDSPPDTGIVQAAAMLATGFESAGKHAAALRGQPPGADECRMGARAIGLGRSGMERLAIEQLVSSARAAYDCARARIHGRATAFANAPASAQPSNHLDANGDPMRIAFLPRLASEPFQEAFSIPGDTAGIASAFAVADDQTGHRNRMAAANSD
>NZ_CP010974.1|WP_162465357.1|100971_101550_+|hypothetical-protein
MARKIVKQLTAPVRDKAVRVPPSGRRANVFFDEFDAMRALRNACVAPVCGVSAILRAKAERRISPPPAPRIGGATSVRGAALYRDSNLDRLRTESGERFDFARAHCIIKSRRPVAERGFHDCRASACRANERSGRGGCAPSRRGAMRGAGVVQGAAGGRIAEEKYPVLLAETRGKLETTSMPRPYGAEFHSA
>NZ_CP010974.1|WP_004523716.1|99078_100674_-|cytochrome-c-oxidase-subunit-I
MSEISTNMPHVRDAAHHAPTGWRRWLFATNHKDIGTLYLLFSIVNLMIGGVMALMIRAELFEPGLQLMRPEFFNQLSTEHGFIMIFGAIMPAFVGLANWMIPLQIGASDMAFARMNNFSFWLLPVSSALLIGSFFVPGGAPAAGWTMYAPLSTQMGPGMDLSIFAIHIAGASSIMGAINIVVTVVNMRAPGLTLMKMPMFAWTWIITSFLLIAIMPVLAGAVTMVLFDRHFGTSFFNASGGGDPVLYQHIFWYFGHPEVYVMILPGFGMISQVIPAFSRKPLFGYASMVYATASIGILSFMVWAHHMFVTGMPVAGQLFFMYATMTIAVPTGVKVFNWVATMWRGSLTFETPMLFSIGFIFVFLIGGLTGVTLAMAPLNVALHGTYYIIAHFHYVMVAASLFSIYAGWYFWVPKWTGYFYDERRGRIHFWGSMISFNVTFFPMHFLGLAGMPRRYADYPAQFTDFNQIATIGAFAFGLMQVYFLFWVALPTYLGKTRRCVDAKPWDGAQGLEWTLPSPAPYHSFETPPAVK
>NZ_CP010974.1|WP_045243508.1|98350_99082_-|DUF2244-domain-containing-protein
MTARPRTRRHARAHADAGANANANADADADADADVNMKADARCDTRKHAQRHCTPAFVAHDPRLMTRDVAENRRVWLLKRNCALSPRQSLISMGLLAALTLAIAMPFAIAGAWAVFACAIGEIAAMCGCFLRYARHAVDYDCVALTEQRLEVIQCDGAQLRRYDWNPLWVAVDLDAADARDPTIRIRHGSETVLVGRHVTLARRRHVAEELNAALAASAGDFGDTDFAPSVRQRQPEPLAAHR
>NZ_CP010974.1|WP_004531587.1|97072_97765_+|hypothetical-protein
MNSQHARFIRPVLGTLCIVSLAALSGCRGDACFGFDGCFDDGGVQTVTLSGTAATGPALASATVNVDCARGSVATLSDGGGHYSVTFDAALPCAITVTSGGTSLHSLAYAGGTFNTTPQTELMLVYLAAQLGTSPARLIGDLPNSSRLQQALENQTNVQAAQTAVVANLQQRYAVMFAVPEFLTTPFFVGQPGVDGDLGALANAGAIDANGMPDALAVSLLQQAGAAHPL
>NZ_CP010974.1|WP_004523720.1|96274_96601_-|thioredoxin-family-protein
MHSSQAYTADAPTRAEVDALAGATVIEFGANWCGICAGAQPAIRDAFSVHADVRHLKIEDGPGRPLGRSFGIKLWPTLVFLRDGTEVARVVRPTHAEQIETIGFAALV
>NZ_CP010974.1|WP_004523721.1|95835_96255_-|YjbQ-family-protein
MQQSIQHITVEARGRGLVEFTPQVRAFVEVQSVSTGLLTVFCRHTSASLLIQENADPSVQRDIERYFAALAPEDDARYEHDTEGADDMPAHLRTALTQVQLSIPVEHGRMVLGTWQGIYLFEHRRAPHRRDVVLHLIGE
>NZ_CP010974.1|WP_004524152.1|95157_95421_+|PAAR-domain-containing-protein
MRGVIRIGDSTSHGGRVETGREGSTVMGRAVACVGDRCTCPMNGHEHCVIVEGDEDVRIEGRAVAFDGHRTSCGATLVSSMPTSGRV
>NZ_CP010974.1|WP_004537686.1|93489_95148_+|DUF2875-family-protein
MKPRIWPFAAVFVLIALGWTFVVMAQHYHYWQATGQEMPGMAASIRNGVLVALGVVAAVFTASYVWLHRAPHESTPATMSSASAAVDTHAATNYGNNGVPALLGQTGANYVLEVRGLGLVTGHETNEEIWKAIQAKADNHSTYMSQNPADYPANKDERMTDLGLSTRISFKFGARNSVEYWPVPVFIWEPPKDRRFGRPGAALDGIRQEASLGVTLLLWQEDANTDDGASIIEKLFAFFDSHPDVPEAVIYTLDGSMKRWLNETPGYIDTFEQSNIPSMPDSMVAMLVSRSDRVDRLIRPYAVEQTENVNNGTTDYDITRLWNFFWKVNQDRGPDSFTAHYEADEKRAGVNTPMSAGFVTSAWWQTKLPDFWKTISNKGPGEFKPTPYIPVRWTTWQVKQFDNAPLLGYLHRPIDVKLADAHGKPLKTAQQAQALKAGWQQAVDTLPTGETPKRIFYDTTGDRAWVAPINQALAQSGPSAPSLDDVKEGYDIGRRIGNTGISSPLVQIGLGLIASYHEGGASATIHRRPNGTATIVMVSPPTHKQPDVNPFR
>NZ_CP010974.1|WP_004529630.1|106838_108290_-|PhoPQ-regulated-protein
MLSLAYPRAEAAPIAFPCPIDARRDLTDTLACYRQTVENQPLNYTMTSIVQLPGIEQRTYRLVSQSWSPDQLVRPDTWVHEVALYIPQDALPRRALVIANDGTRHPGEGETPRTPNDFLPDTLADIARSTRTAVISVSDVPNQLLSYADDGKPKAEDDSVARSWTLFMQSPHTRGAMPLHVPMAASIWRAMSLAERELTSLGIHRFVVSGISKRAWTTWLALIGDQRVDAIAPFAIDLLSTRAALENMYRSYGGNWPLAFYPYYAEGIDRTLDSPAFGLLMRIEDPLSYLGTRHSSRLAVPKYIVNASGDDFFVPDNSQRYFDKLPGAKALRMVPNSSHSDIRRATLDSLVPFVKRIQHGKALPQVDAAPIETNGQTILRLRTSERPRQLLLWQATNPLARDFRYACGIRYTSTPIAMNGARPQQLVLVPPTNGWRAYFVEATFDDGFVATSQTYILGDGYPSTPPPAVGGSCRTLPGRDTHS
>NZ_CP010974.1|WP_004523708.1|108361_108577_+|hypothetical-protein
MAIVGEPPEELIDRLLRACRPLAPILPIAPMPQAKRRDERRVLQGKTWREMHRALVPFDRRTIQKEKPAAR
>NZ_CP010974.1|WP_011326446.1|108587_109142_-|membrane-protein
MSRTESSIFAKRSDWPRVFSKLGLVASSIGVFAFMPNARASDYSIAIGNGYQSVSRTPTGTGFGFLLDATRSGEDAYSIGSGLSFGVRIGAVSLTVAGKALHVRSADGRSGLTTPIGVIAGIPAASRLSLVARAFYTPRAIFNAALGAYTQATAGVRWTYKPINLEAGWRYEALKGRNGTRDPR
>NZ_CP010974.1|WP_004533867.1|109726_110272_+|type-1-fimbrial-protein
MKKKVVSFAVATLFGLVAAQSVYAQSIDQGQVKFTGELTANTCTIDAGSKDQIVPLPKVSTSALAAPGDVAGSTAFEIKVSKCAADVKKVAAHFEMENMDPNTRTLKNEATGADAATNVTIQLVNSDGTELPVGSTGSYFDVTGTDDARGATMIYGGQYYALDTTTAGKVESHTLFTLAYE
>NZ_CP010974.1|WP_004529635.1|110351_111074_+|fimbria/pilus-periplasmic-chaperone
MCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAGASPDEIKVPFVLMPPVFRVEPKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAEQNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRNEKGVSVLRAENRSPYYISISQATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE
>NZ_CP010974.1|WP_004547810.1|111186_113931_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMIAAGAVACGVGSLCMPVVAAEFDGTRTGEQSRPDAMGEAPSGAEPGTRGRQALLVASHASPSAPTTVSFNSRLLMGGGIDLSRFERGNPVVAGIYPVDVTVNGERRGRMDVEFRDVRGGDSAAPCFTRAMLDRLGVEGDIVAKRLDAARDATGAASGQTPTLSASACIGLRDALPDATYTLDSADLTLDLTIPQVDMRKTARGYVDPSRWDNGVNAGLLQYNLSGYASENKFFGNHASSLFLGLQAGANIGAWRVRQRSNLMWANRSAGMSWRSLETYVQRDITALRSQITLGDSYTTGEIFESFGVRGMQLASDDRMLPVSLQSYAPTVRGVADTNARVAVRQRGNVIYEASVPPGPFEFDDLPPTGYGGDLDVTITESDGRTKHFTVPFASVRQLLRPGMQRFNFTVGQYRDALSNGKPWVAQLTYQRGMTNLLTGYAGLLSSTGYASGLIGVALNTPIGAFAFDVTSARTHLPGQGARNGFSSHLSYSKMVPSTGTHFSMAAYRYSTANYYSLADAVTARYGYNAEERAWRNDYRARTRLQLNVNQRIGDRSSAYVSSSLLNYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSSDDRTVTQVGVNLSIPLGSGAYTKRNAFSSLTTSLSRASNGDSSIQANLSGSTAHVVPIDYGVNVSRSVTGDSNFASLGVYGTYRSPFGTYSGNASVDNRARQASFGANGAVVLHRGGVTLSPPLGSAAALVEAKGARGGKLINGQGATIDRFGYAVIPSLMPYRANTVAIDPSELPDDVELANTSEEVVPRNNSIVFVKMETKRGRPVFAATETEDGKPLPMGSELFDVEGKSLGGVGQGGMAFLRGLQGAGNVVAKWGAGASEQCTMPYLVPADQAQAKQSRAIVRIRLRCEPRLSADASQTPHGDGGTRND
>NZ_CP010974.1|WP_004529637.1|113923_114496_+|type-1-fimbrial-protein
MIEMNGLKFRRGAARRWPSIAAAAMFAASAACGAPPSPTVTIKFKGSYNPVTCTVVEGNENKTVHLPTISTSSLANAGETAGATGFDISVLCDGYAGNVLAYFENGPTTNENGNLDVEDPSDGQSASGVQVQLLNGDGSPIKVGDISTMKTVSVEASTPTPIPFFARYYATGKSGAGKVRTYVTFVIQML
>NZ_CP010974.1|WP_004531579.1|114527_115217_+|DotU-family-type-IV/VI-secretion-system-protein
MSIEMPAQPLRMLLQDTMLHVALLTQGARISRVHDWRARCIALVRQFEQALQDGGYRGGIANELSLAQCVFLDEITMRNLSPEQKEEWLRELLQFRFHSTRDGLSKVRARVDRLCSGHSANAALLEMYSLFHEFGLLGDKQGHALADARVSEARPTPGKKAVETAEVWKDGGAANEAAHGRSWRIVGGLLAFAALMTMWLVIDTRLSHEVEQMEVTSGDEAAIHPASGD
>NZ_CP010974.1|WP_004547825.1|115219_116896_+|OmpA-family-protein
MSRQIRFWLVWGAIPFVVLASLCLPLRMQPEWSHVLTIVLIIAAIVLAIEIFEHSRETAQDRTAEAEIDDHELAVIIVAGPHASSLFNSSGDDTAFRREAGALWLRADSVEQLRDTMMRVKASRGRFPDAAVVPLVSESDDESDMRQAFAKWRTELREALCYPDAAYVLPCYLAVYTCLGFKGADGARPKWTGDAIEIGTRQMNAASKVGELLASIRQQLLRPSPTGSSAQCALGLGVFDWLDATALLSSMTMLANTPPFMLKGLTLANVGRRPIRPGAWTRWLTVRTGLHIRQTKSSMAPLPVPRVAKHAESGIREGWSSARHLVSTRASFVPALVFSTVSTLGIAVAVSGWMNSRMIQRVSNDIADYRSGADEWIGRKRFAQARLEHDRTAIVQTLLDGVPTGFGWGLYRGQELLVKLDTVLDSPRTASIAMQLDTVSLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADSSGSDAANFQLSEARARAIRDWFVDQGVLKTRFIVQGAGDTHPIADNDSPSGRAQNRRVEVLLIPDVASDRKASGTEL
>NZ_CP010974.1|WP_004523700.1|117249_117789_+|type-VI-secretion-system-contractile-sheath-small-subunit
MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPAVGDRKFFSIDIDNFDERMKAMKPRVAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALAKAPKPVAEQAENRESKEKH

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Crispr_ID: NZ_CP010974_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010974_2

1314024-1314188

Orphan

Consensus_repeat	Method
GCGAGCGCGGCGAGCGCGGCCGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP010974_2

>merge|NZ_CP010974|2|1314024-1314188|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGACAGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCGGCGAGCGCGGCCGCGCGATGGGCGCCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCGGCGAGCGCGGCCGCG

>NZ_CP010974|2|1|1314024-1314188|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGAC	AGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCG
GCGAGCGCGGCCGCGCGATGGGCG	CCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCG
GCGAGCGCGGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010974.1\|WP_004524117.1\|1308742_1309747_+\|FecR-family-protein	unknown	unknown	gnl\|CDD\|236622
NZ_CP010974.1\|WP_004524116.1\|1308236_1308746_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NZ_CP010974.1\|WP_038787218.1\|1312767_1313748_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321
NZ_CP010974.1\|WP_004554968.1\|1319370_1319622_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004528285.1\|1321263_1322733_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP010974.1\|WP_004184766.1\|1324399_1325794_-\|heavy-metal-sensor-histidine-kinase-IrlS	unknown	unknown	gnl\|CDD\|273593
NZ_CP010974.1\|WP_004524124.1\|1319784_1321044_-\|monooxygenase	unknown	unknown	gnl\|CDD\|173852
NZ_CP010974.1\|WP_004539128.1\|1323130_1323379_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_044363288.1\|1314822_1316631_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP010974.1\|WP_045243552.1\|1309873_1312549_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP010974.1\|WP_024431047.1\|1306353_1307340_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP010974.1\|WP_004553368.1\|1303070_1304066_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP010974.1\|WP_004537359.1\|1305471_1306296_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227949
NZ_CP010974.1\|WP_024428521.1\|1316627_1317638_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP010974.1\|WP_004528283.1\|1317700_1318198_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_017882257.1\|1307735_1307963_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004528277.1\|1307379_1307739_+\|lipoprotein	unknown	unknown	gnl\|CDD\|226765
NZ_CP010974.1\|WP_045243553.1\|1324032_1324305_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NZ_CP010974.1\|WP_004206353.1\|1318356_1319049_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP010974.1\|WP_004199294.1\|1304953_1305475_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123

Protein	Function_ID	Function_description	E-value
NZ_CP010974.1\|WP_004524117.1\|1308742_1309747_+\|FecR-family-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	2.1512e-74
NZ_CP010974.1\|WP_004524116.1\|1308236_1308746_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	7.12237e-71
NZ_CP010974.1\|WP_038787218.1\|1312767_1313748_-\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	2.89418e-52
NZ_CP010974.1\|WP_004528285.1\|1321263_1322733_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.49614e-36
NZ_CP010974.1\|WP_004184766.1\|1324399_1325794_-\|heavy-metal-sensor-histidine-kinase-IrlS	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NZ_CP010974.1\|WP_045243553.1\|1324032_1324305_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	3.85307e-09
NZ_CP010974.1\|WP_044363288.1\|1314822_1316631_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	9.56514e-176
NZ_CP010974.1\|WP_045243552.1\|1309873_1312549_+\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	7.58156e-87
NZ_CP010974.1\|WP_004537359.1\|1305471_1306296_+\|anti-sigma-factor	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	1.13852e-18
NZ_CP010974.1\|WP_024431047.1\|1306353_1307340_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	5.57838e-28
NZ_CP010974.1\|WP_004553368.1\|1303070_1304066_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	5.68078e-24
NZ_CP010974.1\|WP_024428521.1\|1316627_1317638_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	1.08818e-121
NZ_CP010974.1\|WP_004524124.1\|1319784_1321044_-\|monooxygenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	3.81867e-137
NZ_CP010974.1\|WP_004528277.1\|1307379_1307739_+\|lipoprotein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	2.7211e-31
NZ_CP010974.1\|WP_004206353.1\|1318356_1319049_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	8.15398e-14
NZ_CP010974.1\|WP_004199294.1\|1304953_1305475_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	2.21088e-40

>NZ_CP010974.1|WP_038787218.1|1312767_1313748_-|ABC-transporter-permease
MRDATDRLSRFAALGALAAVLAFFAVAAPGFATLANVERVLVNHFALLAIAALGMTLALSIGAIDLSLGTAIDVASLAFVCALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHGVWLGVAAPLWIVAALAGALHVALERSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAPQAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRARDAGQSG
>NZ_CP010974.1|WP_045243552.1|1309873_1312549_+|TonB-dependent-receptor
MDSICNRRPRRAHAGVCADTANAPAGLPEAAQPAARLGAGRPRDAAAPRCARQATSHTSHTSHTSHASHTLHAPCMPQFAPQFAPRRVVARVAAAALFSACAAPGVSGAAEPAAATRAYDIPAGPLDAALTRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLLTGTGLVALRQPSGGYTLARLPGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQQVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSLNATTDSVEVLKGPASLLYGIMDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTFDSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSLAWYGRDTQVVLSYEYRRFLMPFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNRETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDGEYRQVYRADMLRQPIKTPFSYLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLSERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAGIVYKWNDALSLYGSYTQSLKPTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDATNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYAGNRLWNVARHTASLAAVYDVGTVLGGDDLRIGAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQKLQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQF
>NZ_CP010974.1|WP_004524117.1|1308742_1309747_+|FecR-family-protein
MSGAKPAGGPPAVPERVARRAVQWWVELGAAPASDATRARLARWRAEHPAHDAAWRHIEAVNGRLGHVASALSARAARAALLPPRSRGRRAALKALAVLLFAGGGAWTGQAYLPWRAWGADVRTALGERRTITLADGTTVVLNTDTAIDIRFDDATRGVRLLRGEIMVTSGRDAARAVPRALVIATAHGDVRPVGTRFSVRERGDATRVDVFDGAVRIAPRRAVGRAPLITAGHGADFTRDALAGPPRVLGASAGAWVDGILVASNLRLADLLAEIDRYRPGRVRCDAAVANLRVSGTYPLDDTDRILDTLRETLPVDVEYLSRYWVTVVAARD
>NZ_CP010974.1|WP_004524116.1|1308236_1308746_+|sigma-70-family-RNA-polymerase-sigma-factor
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
>NZ_CP010974.1|WP_017882257.1|1307735_1307963_+|hypothetical-protein
MTGKGGAAANPRAATAIVVAASGSISPASRRTALSTMKATANATARRRDGGTMKAPKEPIASGGAVLAGSVESPV
>NZ_CP010974.1|WP_004528277.1|1307379_1307739_+|lipoprotein
MIRNVLIALVCAAPVAALAEPPKAAGGMIVDDDGMTLYTFDRDTMPGKSACTGGCTANWPAALADAYDKPGGDLGFIAAAGGKHQWTYKGRPLYRFSGDAKPGQHTGDGFGGMWHVARP
>NZ_CP010974.1|WP_024431047.1|1306353_1307340_+|YceI-family-protein
MDAAGSFASFAATLACALSAWLAPSAGIAQTAWPPDAPRVAGASGPPRTPGLARTPAAVTDAPGAATAGALAASPPAATRYRLDPRHSGVTFRVDNFWHAHLTMRFARMRAELSDVGDDRLASRVDVTVDAASLGANVPFVAALVKGSAMLDVARYPEIRFVGTRFERTGATTGVLTGELTIRAMTRPITLAVRFDAGRQLEPDTGARAEREGDESDESGESNPAERRAGQGRRAAELRDGRPRDAGPGVADSRDAMRRETDSGSAHRGAEPPERIARAAPDAARPLAFVADGHFSRTAFGLSRWLPAVGDDVRLRIRAEFVRTRADP
>NZ_CP010974.1|WP_004537359.1|1305471_1306296_+|anti-sigma-factor
MSDDPDLCVAPESDEPGLLALSAFVDGELPDAQSRAMARRLASDPRAAGIAAHYRAQRAALRALFADPVAPRHGPCVAWPVRTPWWRRAAFAGGALAAGVALGWLGGALAPRFAPSAALQWVAPAAAQRAFARDADLAYALYAPDARHPVEIAAGRDGAPLAWLSARVGRRIAAPSLREYGFALLGARLLPGAGGPAAQFMYENAAGERLALYVSASAQREAAVRPWRDGGRHTFYWVSERTAYALSGQLDEGRLRSIAADVCGELGGHPQRWR
>NZ_CP010974.1|WP_004199294.1|1304953_1305475_+|sigma-70-family-RNA-polymerase-sigma-factor
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR
>NZ_CP010974.1|WP_004553368.1|1303070_1304066_-|AraC-family-transcriptional-regulator
MPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVLPYREHLIAHPPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLVCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTFTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSVDTAGPRAAPGGGETRGAAGAKSPARAAAKPRA
>NZ_CP010974.1|WP_044363288.1|1314822_1316631_-|sugar-ABC-transporter-ATP-binding-protein
MKVALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNGAGKSTLVKLLAGLHAPDEGEITVGGVPFASGGGGSRAPAGAARRHSTGIGFIHQERLLPATFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRAVLHTQFGLDLAPDRLIGELSVAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDEIARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAAPSAATARAAARADARVSARADAWGDDAHRAPAGADPARPGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGLTGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHDAVAHGIALVPENRAAHGVALTLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKVALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDRVYVMARGEIVAQCASAETTTRDVLAWATLARDARPGGGAGAHDAAARTGTPGAASSAAKVAT
>NZ_CP010974.1|WP_024428521.1|1316627_1317638_-|sugar-ABC-transporter-substrate-binding-protein
MLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGAVDEVKRLGGTPIALDAGRNDSRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGIPLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGNVLVFNGFYGVPVCAIRYDQLKAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGTISAIWAAWDIPQVGATQAVDAAGRREIRTYAVDGSPEAVALVRNPTSSAAAVVAQQPALIGRTAVRNVARYLAGDRSLPAYTFVPSVLVTKDDAGVARPALGQTPAAAGLARR
>NZ_CP010974.1|WP_004528283.1|1317700_1318198_+|hypothetical-protein
MEANERFCATTPAKGTIDSCFGYGMAANARAAQAKMRGGHRTRPARALAGPAASRASMPTPISVGTRDRRRVVSIGIGQSQINFSAMLNKPDDAPLNRKRLIAGQSENAAARAASNETKSSRKRSARAKFRAGMLENPYEGPPRRMIRRGGGAARFDGDFANGCI
>NZ_CP010974.1|WP_004206353.1|1318356_1319049_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MATTRRHATATALAAAARPCAAPHADSFLGILIEVFARVVAALALGVFAYAAYLQWRLDPSRITLILLAVSTTLTVGLSLFAEPPKKRDWSPLALFFSVGGTFYYLVFQLTASRQLLPEAAGAAIQLIGLFWQLFAKVSLRKSFGILPANRGIVSRGAYRFVRHPMYLGYLIIDAGFLLTNFSARNLIAVALQIGLQLGRIRREERLLSEDAAYRAYRRSVRYRVIPGLF
>NZ_CP010974.1|WP_004554968.1|1319370_1319622_-|hypothetical-protein
MFSTLSHVLPRVVLLGEPLANAPFVDGEITRPFRDGFWLLPYSTLCLPLAASDTVIVEPDRPGSAGALAGRQLDAGRQSPSPL
>NZ_CP010974.1|WP_004524124.1|1319784_1321044_-|monooxygenase
MSHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALRVPVHAGGAGASVPQLVQLLIELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFASGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYSTGAIFADWIDVYAQRTDDGGPVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQLFHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIALRAAQPSQRAYEARGGGDAAAEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASATRATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPPYVWQIGAGPGGPREPEQAA
>NZ_CP010974.1|WP_004528285.1|1321263_1322733_-|MFS-transporter
MSTLDLDAPISTPIRTASDVSRLINASGARANHARVIVLLALGGVFLDAYDLTTLSYGIEDVTREFGLTPALSGLVSASIMIGTILGSLLGGWFTDKVGRYRVFMADMLCFVVAAIVAGLAPNVEVLIAARFVMGLGVGIDLPVAMAFLAEFSKFGGRGNKASRLAAWCPMWYAASSVCFLIVFGLYFALPAEHARWLWRASLIFGAAPALAIIAVRGRYMNESPLWAANQGKLRDAARILRESYGIRAHAADDTPRAAPSQPPVSFRVLFRQPYLPRTLVASAMNLCIPFEYTAIAFFLPTILTQFLGAGVFETIAATLALNVLFALTGGLLGMRLAYRLPSRRVAIAGFALQAAALVTLALLGHPQTALGIGAAVLMLGLWLFAEGFGPGAQMMIYPALSYPASIRGTGLGFGRALTGIGSAFALFVLPILNARLGAGMFWIVAIAAFVPIVFLAAIRFEPTARDVDVDIDAGSRAQGDRARVRAAA
>NZ_CP010974.1|WP_004539128.1|1323130_1323379_-|hypothetical-protein
MKAPIIAIAFGIALAACAPLRQDSRSGEAGPPIAAPNRGGGNTPPSGARRAANEVVDYAGRPCVNQTLYVKTHPCIFPRLQR
>NZ_CP010974.1|WP_045243553.1|1324032_1324305_+|DUF4148-domain-containing-protein
MNTKTTIVWATAAALTALALSPAAFSQGKTRDEVRQELIRAQHEGVVPAGKNDYPPSAALVARNKELHAISVHGGKTDLALDQHDQTLAR
>NZ_CP010974.1|WP_004184766.1|1324399_1325794_-|heavy-metal-sensor-histidine-kinase-IrlS
MIRRLLPRTLRARLTALIILSTAATLALSGVALYSALHNRLVGMSSYEMSATLAAMRTHLANVANVDDIPRKSDLWIDQLHGHQNLDLAIYDTDGRLRFATRGFVAPRPALGAPQTRVPASAAPAGATFSYLADDAPLRGGNPRTARIVVQYDGKNDHALLRAYAYTVVVIEVLAVVLTAALAYGIAMLGLSPLRRLVARAEQMSSSRLAQPLPELDTSGELKEMEHAFNAMLKRLDESFVRLSQFSSNLAHDMRTPLTNLLAEAQVALSKPRTADEYRDVIESSIDEYQRLSRMIEDMLFLARSDNAQSHLAIRTLDAAAQAERVAGYYEPMAEDAEVSIVVRGKAEVRADALLYHRALSNLISNALNHAPRGSTITIECAQAADAATISVSDTGRGIEAPHRERIFERFYRVDPARHNSASGTGLGLAIVRSIMENHGGTCGVDSEPHVRTTFWLKFPAHAA

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Crispr_ID: NZ_CP010974_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010974_3

2510935-2511027

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010974_3

>merge|NZ_CP010974|3|2510935-2511027|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NZ_CP010974|3|2|2510935-2511027|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010974.1\|WP_004198321.1\|2506397_2507423_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP010974.1\|WP_028358946.1\|2496464_2499701_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP010974.1\|WP_004188840.1\|2515405_2517199_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NZ_CP010974.1\|WP_045243598.1\|2508498_2510499_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_CP010974.1\|WP_045243597.1\|2505817_2506321_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004524981.1\|2515016_2515274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004524995.1\|2495394_2496468_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP010974.1\|WP_004529174.1\|2500977_2502813_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP010974.1\|WP_004524990.1\|2503144_2504710_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP010974.1\|WP_004524985.1\|2512188_2512497_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP010974.1\|WP_004529180.1\|2507653_2508502_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP010974.1\|WP_004187346.1\|2511490_2512192_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP010974.1\|WP_004539325.1\|2505250_2505760_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_009972317.1\|2512977_2513433_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP010974.1\|WP_004529182.1\|2512489_2512981_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP010974.1\|WP_004546783.1\|2499703_2500828_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP010974.1\|WP_004524979.1\|2518609_2519788_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP010974.1\|WP_004524980.1\|2517209_2518613_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP010974.1\|WP_045243599.1\|2513422_2515045_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP010974.1\|WP_004187193.1\|2511245_2511494_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067

Protein	Function_ID	Function_description	E-value
NZ_CP010974.1\|WP_004198321.1\|2506397_2507423_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP010974.1\|WP_028358946.1\|2496464_2499701_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.40928e-92
NZ_CP010974.1\|WP_004188840.1\|2515405_2517199_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.3979e-179
NZ_CP010974.1\|WP_045243598.1\|2508498_2510499_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP010974.1\|WP_009972317.1\|2512977_2513433_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	1.17254e-62
NZ_CP010974.1\|WP_004524995.1\|2495394_2496468_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.83012e-39
NZ_CP010974.1\|WP_004529174.1\|2500977_2502813_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.08999e-132
NZ_CP010974.1\|WP_004524985.1\|2512188_2512497_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	4.12229e-10
NZ_CP010974.1\|WP_004524990.1\|2503144_2504710_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP010974.1\|WP_004529180.1\|2507653_2508502_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	1.01746e-33
NZ_CP010974.1\|WP_004187193.1\|2511245_2511494_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP010974.1\|WP_004524979.1\|2518609_2519788_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP010974.1\|WP_004529182.1\|2512489_2512981_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	6.86601e-17
NZ_CP010974.1\|WP_004546783.1\|2499703_2500828_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.30959e-25
NZ_CP010974.1\|WP_004524980.1\|2517209_2518613_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP010974.1\|WP_045243599.1\|2513422_2515045_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP010974.1\|WP_004187346.1\|2511490_2512192_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122

>NZ_CP010974.1|WP_045243598.1|2508498_2510499_-|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGCVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAARRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSREVSPEASREVSREVSCEVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGADANVDAEAEARHKR
>NZ_CP010974.1|WP_004529180.1|2507653_2508502_-|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEATERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_CP010974.1|WP_004198321.1|2506397_2507423_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGATFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP010974.1|WP_045243597.1|2505817_2506321_-|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREARAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NZ_CP010974.1|WP_004539325.1|2505250_2505760_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNSELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP010974.1|WP_004524990.1|2503144_2504710_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP010974.1|WP_004529174.1|2500977_2502813_+|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRAKTAAARVQR
>NZ_CP010974.1|WP_004546783.1|2499703_2500828_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMNAGDFTFVLDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP010974.1|WP_028358946.1|2496464_2499701_+|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRARGAATLEEAFIGYLVDASAQEAQGGAGGRPGAGERAAGESLAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSEVGSDVASEAGPEAGLAASAESGAERAREPAADITADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHDLYSQFWPLAASVPVILGATILLLKKQER
>NZ_CP010974.1|WP_004524995.1|2495394_2496468_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQVTRKQIVAAAAVVVVALGAYYGWTLLRHQGPGDGFASGNGRIEATEIDVATKLPGRIDAILVDEGDFVKAGQPLANMQIQVLRAQYDEATAQRQRALNTAAGVQSQVAQRKSDKAAAQAMVVLRESELDAAERRLARSQTLSREGASSLQELDDDRARARSAQAAVSAAAAQVAAAQAAIEATEAQLVAAHSAVTAADATVARVQADIDDSQLASPRDGRVQYRVAQPGEVLPAGGKVLNLVDLSDVYMTFFLPETVVGRVALGADARIILDAAPNYVIPATVSFVSSTAQFTPKTVETANERQKLMFRVKARIDRELLQKHLKLVKTGLPGVAWVRVDPSKPWPAQLMVKVPQ
>NZ_CP010974.1|WP_004187193.1|2511245_2511494_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP010974.1|WP_004187346.1|2511490_2512192_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP010974.1|WP_004524985.1|2512188_2512497_-|membrane-protein
MIEMWETARASFDGIAAAIGLALGFVAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP010974.1|WP_004529182.1|2512489_2512981_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREARDDAARGDARHAGAGAAPDDPRGAARRDPPPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NZ_CP010974.1|WP_009972317.1|2512977_2513433_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWCTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP010974.1|WP_045243599.1|2513422_2515045_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVIDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGVPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAVASGAGPGTTSGTTSGTTSGTTSDPASGSAEPQGARHGR
>NZ_CP010974.1|WP_004524981.1|2515016_2515274_+|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NZ_CP010974.1|WP_004188840.1|2515405_2517199_+|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NZ_CP010974.1|WP_004524980.1|2517209_2518613_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP010974.1|WP_004524979.1|2518609_2519788_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHTVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHVRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA

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Crispr_ID: NZ_CP010974_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010974_4

2931320-2931405

Orphan

Consensus_repeat	Method
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010974_4

>merge|NZ_CP010974|4|2931320-2931405|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGC

>NZ_CP010974|4|3|2931320-2931405|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010974.1\|WP_004196898.1\|2921897_2922338_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP010974.1\|WP_038715292.1\|2927835_2930109_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP010974.1\|WP_004532554.1\|2916909_2918361_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP010974.1\|WP_014920251.1\|2925003_2925594_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004545438.1\|2931982_2933254_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_CP010974.1\|WP_004536946.1\|2925653_2927552_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP010974.1\|WP_004532595.1\|2935384_2937196_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NZ_CP010974.1\|WP_004187469.1\|2930241_2930637_-\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NZ_CP010974.1\|WP_004523292.1\|2919411_2920644_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	unknown	unknown	gnl\|CDD\|223997
NZ_CP010974.1\|WP_004188244.1\|2943558_2944689_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP010974.1\|WP_004523279.1\|2937757_2938789_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP010974.1\|WP_004523291.1\|2924052_2924988_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP010974.1\|WP_004547980.1\|2933468_2935310_+\|ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|180772
NZ_CP010974.1\|WP_038716088.1\|2940746_2941091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010974.1\|WP_004530665.1\|2938785_2940618_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP010974.1\|WP_004530663.1\|2941094_2941544_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP010974.1\|WP_004200705.1\|2941997_2942651_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP010974.1\|WP_004188282.1\|2918362_2919406_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP010974.1\|WP_004529498.1\|2942718_2943153_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP010974.1\|WP_004200700.1\|2922639_2923755_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454

Protein	Function_ID	Function_description	E-value
NZ_CP010974.1\|WP_004196898.1\|2921897_2922338_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	3.1145e-25
NZ_CP010974.1\|WP_038715292.1\|2927835_2930109_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	9.94047e-57
NZ_CP010974.1\|WP_004532554.1\|2916909_2918361_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	2.41184e-132
NZ_CP010974.1\|WP_004545438.1\|2931982_2933254_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	2.62791e-114
NZ_CP010974.1\|WP_004536946.1\|2925653_2927552_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	4.48837e-35
NZ_CP010974.1\|WP_004532595.1\|2935384_2937196_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	3.75845e-75
NZ_CP010974.1\|WP_004187469.1\|2930241_2930637_-\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP010974.1\|WP_004523292.1\|2919411_2920644_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	gnl\|CDD\|223997	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion].	5.32689e-143
NZ_CP010974.1\|WP_004188244.1\|2943558_2944689_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	2.53339e-55
NZ_CP010974.1\|WP_004523279.1\|2937757_2938789_+\|hypothetical-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	3.7258e-30
NZ_CP010974.1\|WP_004523291.1\|2924052_2924988_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.07132e-61
NZ_CP010974.1\|WP_004547980.1\|2933468_2935310_+\|ribonucleotide-reductase	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_CP010974.1\|WP_004530665.1\|2938785_2940618_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.21999e-106
NZ_CP010974.1\|WP_004530663.1\|2941094_2941544_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	3.14402e-50
NZ_CP010974.1\|WP_004200705.1\|2941997_2942651_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	6.31252e-20
NZ_CP010974.1\|WP_004188282.1\|2918362_2919406_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP010974.1\|WP_004529498.1\|2942718_2943153_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP010974.1\|WP_004200700.1\|2922639_2923755_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11

>NZ_CP010974.1|WP_004187469.1|2930241_2930637_-|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP010974.1|WP_038715292.1|2927835_2930109_-|FAD-dependent-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGESVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGCDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP010974.1|WP_004536946.1|2925653_2927552_+|GMC-family-oxidoreductase
MLGATRSTLWGSRERPRIAAARAPGAVASRMREEARECAGPRGAGRAPHRATAAGGKTGRRTVRAPSRARAGSNNQKVNRMKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_CP010974.1|WP_014920251.1|2925003_2925594_+|hypothetical-protein
MCRARGIGRQARGNATAPSPIAAAAIGARPRSAPRGPRISDAGRLAAARSAFAMHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQTPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_CP010974.1|WP_004523291.1|2924052_2924988_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCDEHAPA
>NZ_CP010974.1|WP_004200700.1|2922639_2923755_-|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP010974.1|WP_004196898.1|2921897_2922338_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP010974.1|WP_004523292.1|2919411_2920644_-|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha
MSQYGPLRLHVPEPTGRPGCKTDFSYLRLSPAGKVRKPPIDVAPADTSDLAYGLVRVLDEHGRAVGPWAPDLDPDILRKGIRAMLKTRIFDARMQIAQRQKKISFYMQCLGEEAIAVAHTLALERGDMCFPTYRQQGILMVREYPLVDMMCQLMSNERDPLKGRQLPVMYSTRDAGFFSISGNLATQFIQAVGWAMASAIKGDTRIASAWIGDGATAEADFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEGATFAGRGVGCGIASLRVDGNDFLAVYAASRWAAERARRNLGPTLIEWVTYRAGPHSTSDDPTKYRPGDDWTNFPLGDPLERLKRHMIGIGVWSEQDHEDTKAALEAEVLAAQKEAERYGTLADEHVPNVASIFEDVYKEMPAHLRRQRQQLGV
>NZ_CP010974.1|WP_004188282.1|2918362_2919406_-|alpha-ketoacid-dehydrogenase-subunit-beta
MTTASKEGPAASPMTMIQALRSAMDVMLERDGNVVVFGQDVGYFGGVFRCTEGLQNKYGKSRVFDAPINEGGIVGAAVGMGAYGLRPVCEIQFADYFYPASDQIVSEAARLRYRSAAEFIAPLTIRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLISAIENDDPVIFLEPKRLYNGPFDGHHERPVTPWSKHPASLVPDGYYTVPLDSAAIVRAGGDVTVLTYGTTVHVSLAAAEETGIDAEVIDLRSLWPLDLDTIVESVRRTGRCVVVHEATRTCGFGAELIALVQEHCFHWLEAPVERVTGWDTPYPHAQEWAYFPGPNRVGDALRRAMEN
>NZ_CP010974.1|WP_004532554.1|2916909_2918361_-|2-oxo-acid-dehydrogenase-subunit-E2
MGVHVIKMPDIGEGIAEVELGLWHVKVGDRVKEDQAIADVMTDKASVEIPSPVTGVVVALGGKEGDVLAVGSELVRLEVEGDGNHKAEPDGGARAAAAQPERVADTAHAHASAAAKSARGEHGAGHGRDDARAASSGTSSGASHTQHAEREARGHRESSEYREDRSVSRGASQTDVERGPASPPPARRPGERPLASPAVRKRAWDLGVELRYVHGTGEAGRILHEDLDAYLQGRGAAAQRARGGQAAYVERHDEEAVPVIGLRRKIAQRMQDAKRRIPHFSYVEEIDVTELEALRAELNRKYGDTRGRLTVLPLLARAMVIALREFPQINARYDDEAGVVTRHGAVHLGIATQSKAGLMVPVVRHAEARDPWSIAAEVARLADAARAGRAERDELSGSTITITSLGALGGIASTPVINSPEVGIVGVNRIVERPMFRGGAVVARKLMNLSSSFDHRVIDGMDAAEFIQAVRGLLEQPALLFVE
>NZ_CP010974.1|WP_004545438.1|2931982_2933254_+|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPLEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPRRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
>NZ_CP010974.1|WP_004547980.1|2933468_2935310_+|ribonucleotide-reductase
MRTINKRTRAIAHADSFVRMIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRVGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP010974.1|WP_004532595.1|2935384_2937196_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELAARRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLERALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDHSDAGAAVLATQRASADPLDADERARTIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NZ_CP010974.1|WP_004523279.1|2937757_2938789_+|hypothetical-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP010974.1|WP_004530665.1|2938785_2940618_+|STAS-domain-containing-protein
MTERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDCSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEADAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP010974.1|WP_038716088.1|2940746_2941091_-|hypothetical-protein
MLSSRLVSSRLVSSRLAPCCVYIDIQGEGDVDVDAEGNGNGNIDVIDSKRCEPSGVEPVERAVRRPRYRVQSGCLSGIHRNGIVMPALMPPTNRFDRLRASAVIVDRTKPRRSP
>NZ_CP010974.1|WP_004530663.1|2941094_2941544_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKDVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP010974.1|WP_004200705.1|2941997_2942651_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDIYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP010974.1|WP_004529498.1|2942718_2943153_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP010974.1|WP_004188244.1|2943558_2944689_-|porin
MMNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVVRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASIVLKYASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRSANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP010974_1	1.1\|106055\|19\|NZ_CP010974\|CRISPRCasFinder	106055-106073	19	NZ_CP010974.1	105467-105485	1	0.947
NZ_CP010974_1	1.1\|106055\|19\|NZ_CP010974\|CRISPRCasFinder	106055-106073	19	NZ_CP010974.1	105551-105569	1	0.947
NZ_CP010974_1	1.1\|106055\|19\|NZ_CP010974\|CRISPRCasFinder	106055-106073	19	NZ_CP010974.1	105089-105107	2	0.895
NZ_CP010974_1	1.1\|106055\|19\|NZ_CP010974\|CRISPRCasFinder	106055-106073	19	NZ_CP010974.1	105887-105905	2	0.895

1. spacer 1.1|106055|19|NZ_CP010974|CRISPRCasFinder matches to position: 105467-105485, mismatch: 1, identity: 0.947

cacatcaagcacggcaacg	CRISPR spacer
cacatcgagcacggcaacg	Protospacer
******.************

2. spacer 1.1|106055|19|NZ_CP010974|CRISPRCasFinder matches to position: 105551-105569, mismatch: 1, identity: 0.947

cacatcaagcacggcaacg	CRISPR spacer
cacatcgagcacggcaacg	Protospacer
******.************

3. spacer 1.1|106055|19|NZ_CP010974|CRISPRCasFinder matches to position: 105089-105107, mismatch: 2, identity: 0.895

cacatcaagcacggcaacg	CRISPR spacer
cacatcgagcacggcgacg	Protospacer
******.********.***

4. spacer 1.1|106055|19|NZ_CP010974|CRISPRCasFinder matches to position: 105887-105905, mismatch: 2, identity: 0.895

cacatcaagcacggcaacg	CRISPR spacer
cacatcgagcacggcgacg	Protospacer
******.********.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

445522 : 450261

Burkholderia_virus(71.43%)

transposase,integrase

attL 435687:435703|attR 462088:462104

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
435687:435703	attL	NA	NA	NA	NA
WP_045243524.1\|445522_446722_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	6.9e-224	99.2
WP_004542626.1\|446718_446868_-	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	7.4e-19	98.0
WP_004542548.1\|447123_447705_+	hypothetical protein	A9YX38	Burkholderia_phage	2.2e-21	100.0
WP_004552392.1\|447935_448154_-	hypothetical protein	Q6JIH9	Burkholderia_virus	9.8e-36	98.6
WP_004545584.1\|448356_448599_-	hypothetical protein	NA	NA	NA	NA
WP_009923452.1\|448736_448868_-	bacteriophage protein Gp48	Q8W6Q2	Burkholderia_virus	2.6e-15	97.7
WP_038716556.1\|448877_449153_-	hypothetical protein	Q8W6Q1	Burkholderia_virus	1.4e-42	97.8
WP_004549731.1\|449723_449993_+	BrnT family toxin	NA	NA	NA	NA
WP_004525420.1\|449976_450261_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
462088:462104	attR	NA	NA	NA	NA

DBSCAN-SWA_2

603045 : 674503

Vibrio_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004525541.1\|603045_603813_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_004206084.1\|603851_604853_-	HpnL family protein	NA	NA	NA	NA
WP_004525542.1\|604849_605623_-	hypothetical protein	NA	NA	NA	NA
WP_004188272.1\|605619_606309_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_004188420.1\|606673_608188_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_004530037.1\|609908_610847_+	hypothetical protein	NA	NA	NA	NA
WP_004202234.1\|610880_611429_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004190846.1\|611431_612937_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|613080_613608_+	hypothetical protein	NA	NA	NA	NA
WP_004190879.1\|613687_614119_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_038717909.1\|614132_615995_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|615991_616981_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004525547.1\|616983_619854_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_004536618.1\|619844_622136_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004190563.1\|622301_624590_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004547074.1\|624593_626810_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004525550.1\|626809_627880_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004525551.1\|627882_628599_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|628641_629031_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004530042.1\|629036_629630_+	type VI secretion lipoprotein TssJ	NA	NA	NA	NA
WP_004525552.1\|629626_630988_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004525553.1\|631070_632729_+	OmpA family protein	NA	NA	NA	NA
WP_004525554.1\|632725_636229_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190863.1\|636287_636647_+	hypothetical protein	NA	NA	NA	NA
WP_004190471.1\|636669_637095_+	hypothetical protein	NA	NA	NA	NA
WP_004536812.1\|637415_637691_+	hypothetical protein	NA	NA	NA	NA
WP_004524288.1\|638241_639141_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004528659.1\|639373_640693_+	glycosyltransferase	NA	NA	NA	NA
WP_011205597.1\|640689_642276_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_004530795.1\|642504_643500_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_038724161.1\|643625_643808_+	hypothetical protein	NA	NA	NA	NA
WP_038730422.1\|643804_645388_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004547675.1\|645880_647134_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004530050.1\|647657_649322_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	4.1e-57	31.6
WP_076886253.1\|649454_651020_-	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_045243530.1\|651208_652225_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004523135.1\|652658_653858_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_004198247.1\|654035_655061_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009933096.1\|655230_655482_+	hypothetical protein	NA	NA	NA	NA
WP_004523136.1\|655493_656768_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.3e-105	54.1
WP_004535113.1\|656840_657812_+	membrane dipeptidase	NA	NA	NA	NA
WP_004186987.1\|657962_658496_+	4-vinyl reductase	NA	NA	NA	NA
WP_004186960.1\|658556_660620_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004186901.1\|660622_662548_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_004202150.1\|662552_663725_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004530055.1\|663721_664507_+	drug:proton antiporter	NA	NA	NA	NA
WP_004535147.1\|664558_665800_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004530056.1\|665820_666966_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004186918.1\|667075_667939_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004530057.1\|668119_669775_+	APC family permease	NA	NA	NA	NA
WP_004186920.1\|669861_670737_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_004551409.1\|670880_671753_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004186939.1\|671915_673469_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_004530058.1\|673465_674503_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_3

2643331 : 2694523

Streptococcus_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004546323.1\|2643331_2644060_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	7.1e-22	31.2
WP_009950539.1\|2644279_2645713_+	amidohydrolase family protein	NA	NA	NA	NA
WP_038716574.1\|2645738_2646392_+	glutathione S-transferase	NA	NA	NA	NA
WP_004546323.1\|2646572_2647301_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	7.1e-22	31.2
WP_076823033.1\|2647354_2647657_-	hypothetical protein	NA	NA	NA	NA
WP_009950543.1\|2647726_2649487_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_076873196.1\|2649912_2650212_-	hypothetical protein	NA	NA	NA	NA
WP_004546318.1\|2653138_2653336_-	hypothetical protein	NA	NA	NA	NA
WP_004529300.1\|2653336_2653600_-	putative Immunity protein 75	NA	NA	NA	NA
WP_004546328.1\|2654191_2658850_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	8.3e-23	34.9
WP_004530178.1\|2658836_2660105_-	hypothetical protein	NA	NA	NA	NA
WP_004546303.1\|2660120_2662325_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.9e-42	27.7
WP_004524834.1\|2664299_2664647_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-40	72.9
WP_085952178.1\|2664833_2665945_-\|transposase	IS3-like element ISBp1 family transposase	NA	NA	NA	NA
WP_038714911.1\|2666695_2668729_-	hypothetical protein	NA	NA	NA	NA
WP_004555376.1\|2668969_2671141_-	alpha-galactosidase	NA	NA	NA	NA
WP_004524829.1\|2671145_2671997_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004524828.1\|2671997_2672921_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004524827.1\|2672983_2674225_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004524825.1\|2674260_2675505_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_004557920.1\|2675547_2676186_-	hypothetical protein	NA	NA	NA	NA
WP_004533396.1\|2677958_2679113_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_004524822.1\|2680455_2681196_+	hypothetical protein	NA	NA	NA	NA
WP_009960547.1\|2681624_2681780_+	recombinase family protein	A0A0C4UR34	Shigella_phage	2.0e-06	67.6
WP_004552183.1\|2681745_2682252_+	recombinase family protein	A0JC18	Ralstonia_phage	3.3e-18	52.8
WP_161645915.1\|2681927_2682725_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004557924.1\|2684538_2685105_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_085965050.1\|2685853_2686989_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	3.1e-16	28.8
WP_085965013.1\|2688243_2689424_-\|transposase	IS3-like element ISBps1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.2e-60	42.9
WP_004546292.1\|2690050_2691202_+	hypothetical protein	NA	NA	NA	NA
WP_158331393.1\|2691212_2691467_-	hypothetical protein	NA	NA	NA	NA
WP_045243605.1\|2692510_2694523_-\|transposase	transposase	S5WIU1	Leptospira_phage	1.2e-31	51.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010973

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010974

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection