CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP009486	Burkholderia ubonensis MSMB22 chromosome II, complete sequence	3 crisprs	csa3,PD-DExK,Cas14u_CAS-V,cas3,DinG	2
NZ_CP009488	Burkholderia ubonensis MSMB22 chromosome I, complete sequence	0 crisprs	csa3,DEDDh,Cas14u_CAS-V,cas3,WYL,cas4,PD-DExK,DinG,RT	5
NZ_CP009487	Burkholderia ubonensis MSMB22 chromosome III, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009486_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009486_1

5684-5782

Orphan

Consensus_repeat	Method
CCGCATTAACTTAAACCAACCAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009486_1

>merge|NZ_CP009486|1|5684-5782|CRISPRCasFinder
CCGCATTAACTTAAACCAACCAGCCTCCACGATTCCCGGTGCAGTTCAGCAACTGAAAATCGCCGACGCTGAAGCCGCATTAACTTAAACCAACCAACC

>NZ_CP009486|1|1|5684-5782|CRISPRCasFinder
CCGCATTAACTTAAACCAACCAGCC	TCCACGATTCCCGGTGCAGTTCAGCAACTGAAAATCGCCGACGCTGAAG
CCGCATTAACTTAAACCAACCAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009486.1\|WP_045563734.1\|11637_12906_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP009486.1\|WP_045563731.1\|6150_6708_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP009486.1\|WP_042588269.1\|8288_9098_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP009486.1\|WP_042588330.1\|15369_16659_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|237902
NZ_CP009486.1\|WP_045565259.1\|10573_11578_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274824
NZ_CP009486.1\|WP_045563728.1\|2255_2552_-\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|376390
NZ_CP009486.1\|WP_045563733.1\|9520_10357_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP009486.1\|WP_045563736.1\|14200_15178_-\|chromate-resistance-protein	unknown	unknown	gnl\|CDD\|378257
NZ_CP009486.1\|WP_143135343.1\|2703_3087_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009486.1\|WP_071738725.1\|3821_4373_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP009486.1\|WP_157641939.1\|1332_2037_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP009486.1\|WP_045563735.1\|13025_14204_-\|chromate-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP009486.1\|WP_042588331.1\|16730_17522_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379243
NZ_CP009486.1\|WP_045563732.1\|9104_9548_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228

Protein	Function_ID	Function_description	E-value
NZ_CP009486.1\|WP_045563734.1\|11637_12906_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.87293e-17
NZ_CP009486.1\|WP_045563731.1\|6150_6708_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	3.19829e-55
NZ_CP009486.1\|WP_042588269.1\|8288_9098_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.9024e-24
NZ_CP009486.1\|WP_042588330.1\|15369_16659_+\|MFS-transporter	gnl\|CDD\|237902	PRK15075, PRK15075, tricarballylate/proton symporter TcuC.	0
NZ_CP009486.1\|WP_045565259.1\|10573_11578_-\|hypothetical-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	4.24059e-13
NZ_CP009486.1\|WP_045563728.1\|2255_2552_-\|H-NS-histone-family-protein	gnl\|CDD\|376390	pfam00816, Histone_HNS, H-NS histone family.	3.24737e-17
NZ_CP009486.1\|WP_045563733.1\|9520_10357_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.06886e-33
NZ_CP009486.1\|WP_045563736.1\|14200_15178_-\|chromate-resistance-protein	gnl\|CDD\|378257	pfam09828, Chrome_Resist, Chromate resistance exported protein. Members of this family of bacterial proteins, are involved in the reduction of chromate accumulation and are essential for chromate resistance.	1.3188e-63
NZ_CP009486.1\|WP_071738725.1\|3821_4373_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.09458e-52
NZ_CP009486.1\|WP_157641939.1\|1332_2037_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.17562e-75
NZ_CP009486.1\|WP_045563735.1\|13025_14204_-\|chromate-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	2.30559e-125
NZ_CP009486.1\|WP_042588331.1\|16730_17522_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|379243	pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	1.85955e-35
NZ_CP009486.1\|WP_045563732.1\|9104_9548_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.7927e-14

>NZ_CP009486.1|WP_071738725.1|3821_4373_+|recombinase-family-protein
MIIGYARVSTDEQNLGLQIDALNQARCDKIFTDNGFSGADFSRPGLDAALSSLMPGDSFVVWRLDRLGRSLSKLIDLVTHLRGRDVQFTSITESINTDTPGGLLVFHLMAALAQFERSLISERTRAGLAAARARGVKLGRRHALDNQQRIQALELMKNFPISEVAARYDVHPRTLKRLFSSNK
>NZ_CP009486.1|WP_143135343.1|2703_3087_-|hypothetical-protein
MAHIRDVAKRRVSKVDDSTTMDLVSRLLILAAPSGPEDLDSYIRMFESAAFALIGRYFYGNDRIAARAAYRNGFRDGLGGVNLETSRLKLVDPLEANISSNILEMLRNEGWSHGAEIERRFRDFQSS
>NZ_CP009486.1|WP_045563728.1|2255_2552_-|H-NS-histone-family-protein
MGTYQELLLQLDRLKREIEMAREQEARLIAAEIANVLASHGVRLEEILGSGVRSRKTEVRPKYWDPETGATWSGRGRMPLWLVGQDLEKFRLPRQDES
>NZ_CP009486.1|WP_157641939.1|1332_2037_-|EAL-domain-containing-protein
MALLRKEFFVVYQPIVDASSNRVVMHEALIRWRHPVRGVVMPRDFIDVAEGSEIICGITDSVLDQVFMMLSVRQGLPFEAPVSINISPVCLVHGCIVDVIRKKMEIYGVDANSVFLEITETAPVDASDHVLNQFSELQAMGVRILMDDFGVGFSEVANLLRLPFNGIKIDSSLLCQVPNDNRYCVLISGVIEIALKLGLTVVAEGIESHQQLEWIRRYPGVLAQGWLFGLPLEL
>NZ_CP009486.1|WP_045563731.1|6150_6708_-|recombinase-family-protein
MLIGYARVSTDEQHLDLQLGSLRAFGCETVFQDHGGSGARFDRPGLAQALRAVNMGDTLVVWRLDRLGRSIQHLLELISHLQCKDVQFVSLTECIDTTSPTGRFIFHMLAALAEFERALIAERTRAGLAAARQRGSHLGRPRSLTPEQIEQARALAQISNIRAVSQHYNVDVRTLKRYLRLATAA
>NZ_CP009486.1|WP_042588269.1|8288_9098_+|IS5-family-transposase
MKTRKPYPSDVSDEEWSFVVPYLALVREDSEQRRHELREVFNALRWLIRSGAPWRMLPNDLPPWEAVYQQTQRWMRAGCFEAIVHDLRELLRVCDGRKAQPSAMILDSRTLQSTPESGARAGYDGAKRRKGSKVHLAVDTLGQLLALHVTPANEQDREQVEQLAHAVQELTGQSVALAYVDQGYTGEAARQAAQSHGIELEVVKHTEAKRGFVLLPRRWVVERSFAWAARFRRLARDYERLPHTLAGFHFLAFACLMLPKIIDFIHIGS
>NZ_CP009486.1|WP_045563732.1|9104_9548_-|GNAT-family-N-acetyltransferase
MPAATPATLRFSTDKHELDIDAIYDFLHRDAYWSKGIPRDVFDRSIDGSLCFGAYVGARQVGFARLVTDHATFAYLCDVFVLPAERGKGYGRALIDHVFAQDMVQGLRRIMLVTSDAHALYRPVGFEPPSHPERMMELRRPDIYTAR
>NZ_CP009486.1|WP_045563733.1|9520_10357_-|Fic-family-protein
MSSQPATLLKFLKSIDADQATLDAARPLSQQAVASLRDTLVREWAGQASVIEGGAPTPRETRAVLECITIDGTTLREHLDATHHRDAIGYVEDIVSKREALSERQIRNLHRLALNRIGDVRRYRQENVAIAGASTVPPGFLDLPADMAALIGWYREAGAMHPVMRAAELHARLLKIHPFVDGNGRTARLLLAFELMKDGYPPAIIRNEDRPAYHDALDRACAGGEFDNIACVVAEAVRRALHLYLDVLGLPYAAKPDADHFPNHPNGEPTCPLPPPPR
>NZ_CP009486.1|WP_045565259.1|10573_11578_-|hypothetical-protein
MPFALSVVFGASSPLDRCVFAAGDDAPSGSLPLQHVADVPLPGRPTRLDYASLDASRHLLFIAHLGDGEVIVFDTRASRVTARIADVSSVHGVLAVPELSRVYASATGADEIVAIDAATLKIVARMPGGQYPDGMAYAPDVHKLYVSDEYGKTETVIDVRSNRRVATIPLDGEVGNTQYDPVSRHIFVNVQTRGQLVEIDPATDRVVGRFDLPGAKGNHGLLIDARDGLAFIACEGNDKLIVFDLHTKQVVRSFDVGADPDVLALDPGPGTLYVAGEAGTVSMFRVQGANVARIGEGRVGPNAHVVAVDPTTHRSYFPLKRVDGRPVLRIFEPR
>NZ_CP009486.1|WP_045563734.1|11637_12906_-|MFS-transporter
MHVPSGRVAVSFAIRLARRFLPAGVEHAAWIILVSRGLRGFCDGFIAVLLPAYLLSLGFAQFDVGLISTATLMGSAVATIAVGMVASRFPHRRMLTLAAIMMAATGVGFASLSSMWPLLVVAFVGTLNPSSGDVSLFLPLEQARLAEAATGHARTSLFARYSLVGAVSAASGSLAAGLPLWIASHAGMSLLAAMRAMFLVYAAAGLAVCVLYTRLPRTGSHAAAAAPPLGPSRRIVTRLALLFSVDAFAGGLVVNSLLSLWLMQRFGFSVGAAGRFFFCTGLLAAGSQLAAAPLSRKIGLLNTMVFTHIPSSVCLIGAALAPSLPATLALLLMRSALSQMDVPTRTAYVMAVVTPAERAAAASFTSVPRSLAAAVAPTLAGGLFGLGWLGAPLVACGALKIAYDLSLLAAFRHIKLHEGERR
>NZ_CP009486.1|WP_045563735.1|13025_14204_-|chromate-transporter
MTTTIATNAPTYTLGQLVGYMLRLGAFGFGGPVALAGYMRRDLVEKYGWITEADYKEGLTLAQLAPGPMAAQLAIYLGFVHYRILGATLVGLAFVLPSFLMVLGLGFAYAHFGGLSWMQAVFYGVGAAVVGIIAMSAYKLTTKTVANDKLLWAIFLTLAAVTFITESEIAWLFIVAGLIGWFWRAPPKWLHKGGPNALAGANLPAATGLLSGIDLPQLVQIGAFFAKAGAFVFGSGLAIVPFLYGGVVTEHHWLNDKQFVDAVAVAMITPGPVVITVGFIGYLVAGLPGACVAALGTFLPCYLFTIIPAPYVKKYGHRPDVKAFVNGITAAAVGAITGSVLVIAKRSIVDVPTAIVAVATVVLLWRFKKLQEPVIVIAAALFGLVAYPLLHR
>NZ_CP009486.1|WP_045563736.1|14200_15178_-|chromate-resistance-protein
MDAGSTWLLLVLTLPTENATARMRFWRALKAKGCAVLRDGIYLLPYTDERERMLRELAGAIAESGGTAHLLRAPSLDASQEGEFRALFDRDEEYAAFNLTLAEARKTLAGQSATELARLLRRLRKDFDTIRAIDYFPGDSATRAEVALRDFIALVDTVLSPGEPHAAERAIRVLAIDAYQGRTWATRQRMWVDRVASAWLIRRFIDTRARFIWLASPADCPPDALGFDFDGAAFTHVGERVTFEVLLASFGLDKDPALMRLGEIVHALDVGGPAVPEAVGFEAVMAGTRQRAENDDQLLEQMGAVLDALYVHFASNGKSETGGRS
>NZ_CP009486.1|WP_042588330.1|15369_16659_+|MFS-transporter
MSHSVATPSPSRAAAVFRVTAGNFLEQFDFFLFGFYATQIASVFFPSTSEFASLMMTFAVFGAGFLMRPLGAIVLGAYIDEVGRRKGLIVTLSIMASGTILIAFVPGYASIGLLAPAAVLAGRLLQGFSAGAELGGVSVYLAEMATPGRKGFYTSWQSASQQVSIVVAAALGFALNQWLSAAQIAAWGWRVPFLVGCLIVPAIFMLRRNLQETEEYAQRRHRPSMREVFATLARNWAVVLGGMLLVAMTTTSFYLITVYAPTFGKTVLHLSTADSLLVTLCVAVSNFIWLPIGGALSDRFGRRPVLLAMTALNVLTAYPALSLLAHAPSFVNMLLVLLWLSFMYGLYNGAMVAALTEVMPADVRVAGFSLAYSLATAVFGGFTPAISTALIHSTGDKAAPGFWMSFAAACAFGATVLLYSRRRDALRAA
>NZ_CP009486.1|WP_042588331.1|16730_17522_+|substrate-binding-domain-containing-protein
MNHRPFTRRAAIWLAAAALAATALQARAAELRVMISGGFTAAYQQLGPGFTAATGDTLDTIRGPSMGQSKEAIPNRLARGEQADAVIMVGYALDKLIQEGKVMPASRVELADSRIGMVVRAGAPKPDIGTVDGLKDALLRAKSVAYSDSASGVYIEKEMFRKLGIDAQVRPKASMVPKIPVASVVANGDYEIGFQQVSELLPAPGVTYVGKVPEAVQSVTRFAGGIPVGAAHPENARKLLDYLASPQAQPVVRATGLDSVTTR

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Crispr_ID: NZ_CP009486_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009486_2

83741-83836

Orphan

Consensus_repeat	Method
CGACACGCCGCCGTTGATCGTGCC	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of NZ_CP009486_2

>merge|NZ_CP009486|2|83741-83836|CRISPRCasFinder
CGACACGCCGCCGTTGATCGTGCCCGAGTTGGTAAACGTATTGCCCTGCCCCGGCGTGCCGTTCGAGCCGAACGACACGCGGCCGTTGATCGTGCC

>NZ_CP009486|2|2|83741-83836|CRISPRCasFinder
CGACACGCCGCCGTTGATCGTGCC	CGAGTTGGTAAACGTATTGCCCTGCCCCGGCGTGCCGTTCGAGCCGAA
CGACACGCGGCCGTTGATCGTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009486.1\|WP_042588384.1\|90122_90833_-\|response-regulator	unknown	unknown	gnl\|CDD\|236738
NZ_CP009486.1\|WP_157379808.1\|91946_92090_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009486.1\|WP_045563780.1\|86488_88879_+\|patatin-like-phospholipase-domain-containing-protein	unknown	unknown	gnl\|CDD\|132844
NZ_CP009486.1\|WP_045565263.1\|69523_69964_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009486.1\|WP_045563783.1\|94564_95503_-\|serine-protease	unknown	unknown	gnl\|CDD\|223343
NZ_CP009486.1\|WP_052686435.1\|92098_93550_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009486.1\|WP_045563776.1\|74509_75403_-\|PenA-family-class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|185339
NZ_CP009486.1\|WP_088500864.1\|93876_94521_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP009486.1\|WP_045563779.1\|85197_86232_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564
NZ_CP009486.1\|WP_045565264.1\|70587_73245_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009486.1\|WP_045563784.1\|95801_96701_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP009486.1\|WP_010089816.1\|76915_77167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009486.1\|WP_042588374.1\|66131_67178_+\|DUF1016-family-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
NZ_CP009486.1\|WP_045565265.1\|77274_79494_-\|amylo-alpha-1,6-glucosidase	unknown	unknown	gnl\|CDD\|225942
NZ_CP009486.1\|WP_042588383.1\|88915_90046_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236724
NZ_CP009486.1\|WP_045563781.1\|91056_91971_+\|glutaminase	unknown	unknown	gnl\|CDD\|234880
NZ_CP009486.1\|WP_045563774.1\|67271_67934_+\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NZ_CP009486.1\|WP_045563775.1\|67930_69301_+\|sensor-histidine-kinase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182388
NZ_CP009486.1\|WP_042588373.1\|65532_65886_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP009486.1\|WP_045563777.1\|75517_76408_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176176

Protein	Function_ID	Function_description	E-value
NZ_CP009486.1\|WP_042588384.1\|90122_90833_-\|response-regulator	gnl\|CDD\|236738	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional.	1.3638e-83
NZ_CP009486.1\|WP_045563780.1\|86488_88879_+\|patatin-like-phospholipase-domain-containing-protein	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	1.1545e-57
NZ_CP009486.1\|WP_045563776.1\|74509_75403_-\|PenA-family-class-A-beta-lactamase	gnl\|CDD\|185339	PRK15442, PRK15442, beta-lactamase TEM; Provisional.	5.22959e-75
NZ_CP009486.1\|WP_088500864.1\|93876_94521_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.16307e-43
NZ_CP009486.1\|WP_045563779.1\|85197_86232_-\|rod-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	8.66857e-158
NZ_CP009486.1\|WP_045563783.1\|94564_95503_-\|serine-protease	gnl\|CDD\|223343	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones].	4.06217e-42
NZ_CP009486.1\|WP_045563784.1\|95801_96701_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.64156e-37
NZ_CP009486.1\|WP_042588374.1\|66131_67178_+\|DUF1016-family-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	1.22376e-93
NZ_CP009486.1\|WP_045565265.1\|77274_79494_-\|amylo-alpha-1,6-glucosidase	gnl\|CDD\|225942	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism].	3.10881e-118
NZ_CP009486.1\|WP_042588383.1\|88915_90046_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	5.56748e-71
NZ_CP009486.1\|WP_045563781.1\|91056_91971_+\|glutaminase	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP009486.1\|WP_045563774.1\|67271_67934_+\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	8.00208e-85
NZ_CP009486.1\|WP_045563775.1\|67930_69301_+\|sensor-histidine-kinase-N-terminal-domain-containing-protein	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	4.50406e-64
NZ_CP009486.1\|WP_042588373.1\|65532_65886_-\|NirD/YgiW/YdeI-family-stress-tolerance-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	1.95735e-25
NZ_CP009486.1\|WP_045563777.1\|75517_76408_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176176	cd08487, PBP2_BlaA, The C-terminal substrate-binding domain of LysR-type trnascriptional regulator BlaA which involved in control of the beta-lactamase gene expression; contains the type 2 periplasmic binding fold. This CD represents the C-terminal substrate binding domain of LysR-type transcriptional regulator, BlaA, that involved in control of the expression of beta-lactamase genes, blaA and blaB. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. The blaA gene is located just upstream of blaB in the opposite direction and regulates the expression of the blaB. BlaA also negatively auto-regulates the expression of its own gene, blaA. BlaA (a constitutive class A penicllinase) belongs to the LysR family of transcriptional regulators, whereas BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin binding protein but it does not act as a beta-lactamase. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.31848e-117

>NZ_CP009486.1|WP_045565265.1|77274_79494_-|amylo-alpha-1,6-glucosidase
MPNHADETTTRAPQVAPVPPTQASGPAFIAPEADPQADARNNQYVLKAGDAFVVSDALGDVSGHDDGLFVDDMRVLSKWRLTFGGRAPSLLSGATSADNASFTAHLTNRPLPPLGGHETPEGVIHIERMRVLANNVLYEALTLTNYGASEAEVPLSVSFAADFKDMFEVRGTHRARRGTIAQPRIDAGAVRLRYDGLDRVERAVTLNFSPAPDALSVDRADYRLTIAAQACVSIYLSVEATVGAARGETPGCGRAALRTALVAVHRAMRARRATMARVRTGNPLFNAWLDRSLADLGLLTTQLDTGPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRFLAAHQARETSAFRDAEPGKIMHEFRKSEMAATGEVPFALYYGGVDTTPLFVVLAGAYVEHTGDDALIDELWPALERAIQWVSDKCDRNPYGLLDYQRTSERGLANQGWKDSHDSVFHADGRFPDGPIALVEVQAYACAAFDAMSACSQRRGHAADATRYALRARTLREQVEALFWMPDANFYGIALDGHGELCRVLASNAGHLLAFGLPDPARGAAVADALGSTLFQTGWGVRTLAAGQPRFNPMAYHNGSVWPHDNALAARGLARYGDKAAVLNLLRSLFEAAVSFEMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGAPFMMLQACLGVSVDAARHEVRVERPALPEGVDWLRIDDLRVGDDSVSLTFRRVDGQVVAAAEPGRVKVVAVL
>NZ_CP009486.1|WP_010089816.1|76915_77167_-|hypothetical-protein
MTTDKRPDDGEQKLEHLEAAVNHLHESIESQRIAVGAAKGILFSLIETLGALIGDPDLPEHARSGYEALRNKARDLRGSLDKH
>NZ_CP009486.1|WP_045563777.1|75517_76408_+|LysR-family-transcriptional-regulator
MTKLRPHLPLNALRAFESSARHLNFTRAGLELSVTQAAVSQQVRALEERLGCMLFTRLPRGLGLTDEGRALLPVLSDAFSRIETVLKQFDGGRFHEVLSIGVVGTFALGWLMPRLKRFGDVHPFVELRLRTNNNVVDLAAEGLDFAIRFGVGNWPATRNERLLDAPLTALCTPEIAARVAQPGDLANETQLRSYRTDEWLGWFAAAQLEPWPVNGPVFDSSRLMVEAAMQGAGVALAPACMFTRELQLGLLARPFDIDVQAGGYWLTSLKSKPLTPAMTLFRDWIANEAAGAAPVE
>NZ_CP009486.1|WP_045563776.1|74509_75403_-|PenA-family-class-A-beta-lactamase
MTYSSQRRTLLLAAATAPLALTLSACASPLANASSVGAASSLAELERAAGGRLGVHALDTATGRRVRHRADERFPFCSTFKAILIAAVLAESVARPALFTQRVTYRQADLLEWSPVTEKHVDTGMTVSELCEATAQYSDNAAANLLMKLLGGPAAVTAFARSIGDDTFRLDRWEPELNTALPGDARDTTTPAAMAASLRALALGDALPAPQRAQFAQWLRGNKTGDKRIRAGVPTGWQVGDKTGTGDYGTTNDIGVLWPPARGPIVLTVYYTQARADAKRKDDVIAAATRIAIAALG
>NZ_CP009486.1|WP_045565264.1|70587_73245_-|hypothetical-protein
MPILLTRYGIAPEKTFMARPGKPPAGKAAPKAAATVGDPTPAIPLGKTTEAHYTVRSLRGGYVYVYYEVSKSWEAYAVDNEGRLTSVSLDGYMPPQAWPFHAACARNMQKVANASLLTILDPKTAGKVWFGFSDAWWTAAVRTDNESESVRRHHMRCIDVGGWYNDNQPAKVPAHASAMTNVDAVVADYAMSGDDCRRLFFWSPFPGLRHDGLQIPRAHALKAESQRLLKDKGLVVVLDDPVAILQEISAYIDKRWYSFMSQNDAKDPLHPGETWRRKSALSSALDVLKQRVEREAEASVYGDARAAQENIEWLDGGDGRRVYNVALSSPDYRKLAQPILDEKVSQADLDMARKKRWGAYAKLFDPAQREAFEKRYEAASALYDAEYTAPLANAHAAWLRSAKLHAVFDHHFDMHDINSGVAFSGVALSCMRGTGGLGACMQVYSDWYEQPIDRSPIWRAKLLNHQPLLQAVDSVSGSADSPFTNVDNWINLSVVYSTAVEKIKARGAALSAPGTRANAIESVDVLPALLQELGVLPMTRLTKGGKAGTALLATLGMRAGHPVRWVQVVGTRRDFFMSVMEVIQASQKKRGISLGNLQYSLKDQLRMFGIEGVALDEKIQFWTVVFDEQAQRDLANQRVPPAQRGDALGKTLKVVTVEEFSKSTLARTVEFATRPGSLAGVGLLLSCLGLQQAGSADASMKHLQTRAVMKIAALYSAGAGSLLELVRVGAKAVKVAKERRIPLLSPWLSARLGERGFMIWEGLGGVAVGVGTIILGLIDLQNAIESEKRKQPGMLVLYAINSGSEFAVGGYTAAIGVRLIIWRVVTGFSPVIFWLTAVIFVASIIIEVEKDPPTIDWVRQCLWGKENNYKSEAEELDNFDKALIG
>NZ_CP009486.1|WP_045565263.1|69523_69964_-|hypothetical-protein
MWPTDEGMRGQWEYYRRYMEEGPDTLPEPEILLPIERKRESFRMGAQLCWFWAGPMLGPAIFLAPLTVPGSLLRWFIMHVTRRLPRWPQHVVDACPISPDDKYAFKPAQSLNVSLDLAFIVTASVLALDATLIYWFVSWLSQPGFH
>NZ_CP009486.1|WP_045563775.1|67930_69301_+|sensor-histidine-kinase-N-terminal-domain-containing-protein
MTGLRRALMRWSGASLRRRLLFWLLPAACVIGLLASAGTYWGALRELDDLLDDQMRSMTKQIVVGPNGELSFSGDARGKHRFKADDPDAVLLQVWRNGTLVYSTDRDLTLPPPAQAGIASVDVGGQSWRTYVTERGGTTIRVAQARHARWEAIAGIAVHLLWPVLSMLPVLAIGLWFGIGAGLRPLRLIAAGLKRRNANNLEPVDVASMPNEVRPLAEAINDLLARLDRSFTLQRHFIADAAHELRTPIMGLSIQSQLLRRAATPDERERILAQIHAGTTRLGHLAEQLLTLARIEPDAQTAAFAPVDLAALCRAVVADRARVADAHRVDLGAIGASPVTVAGNADTLRVLLNNLVDNAIRYAGDGACIDVSARVDGATPVLEVSDDGPGIPEAERADVWERFYRGAGAQAATSSGSGLGLSIVKRIAEQHRATVTLGTSAGGRGLTVTVRFNAPA
>NZ_CP009486.1|WP_045563774.1|67271_67934_+|response-regulator
MRVLLVEDDPLIGSGLEHGLKQEGFAVDWVKDGDAASLALRTTGYGLLLLDLGLPNRDGLSVLAALRRRDENLPAIIITARDGLSDRIAGLDSGADDYLVKPFALEELLARIRAVNRRHAGRAQTMLAVGPLRLDPVKHLVWLDDAEVTLSPKEFVLLHELMREPGAVISREQFEERLYSWGEEIESNAVQVHIHNLRKKLGHDMIRTVRGVGYRIGDAA
>NZ_CP009486.1|WP_042588374.1|66131_67178_+|DUF1016-family-protein
MTDTLSAGPWGDDYRSWLTDLKQRVEHARQRAAASANRELVTLYWQIGRDILERQQQRGWGAKVIDQLARDLKDAFPDMRGFSPRNLKYMRALAQAWPAPEFVQQPAAQLPWFHLCTLLDKVKDPADRDWYAGKSLEHGWSRNVLAMQIDTQAHTRAGSAVTNFDARLPPPQSDLAREALKDPYVFDFLGLTEDAQERDIEQALTRHITRFLLELGAGFAFVGRQYRLEVGGDEFFIDLLFYHLKLRCYVVVELKATPFRPDYAGQLNFYLSAVDAQLRAPEDQPTIGLLLCRERNRLVAEYALRGMANPMGVAEYQLLRQIPKSLESGLPSIDRIEAELRPDLPEVE
>NZ_CP009486.1|WP_042588373.1|65532_65886_-|NirD/YgiW/YdeI-family-stress-tolerance-protein
MKQLARILTIALAALPAAVYAQYTGPSALTTTTVKELLANGKDDQHVQLQGRIVKHVGGEDYEFADATGTIRVEIDDKLWAGGQPVSDKSEVKLTGEFERKWSGRVKVDADRIDVVR
>NZ_CP009486.1|WP_045563779.1|85197_86232_-|rod-shape-determining-protein
MSTPLFGKLFAHPVAIDPGTATTRIYTHDRGVVLNQPSVICYRKPGGALARQTLEAVGERAKALLGREPIHLEAVRPLQHGVIADAQAAEQMIRHFIDMSRTRSRFGRRVEVALCVPSSATAVERHALSEAALAAGAASVTLVDEALAAAFGAGLPVTDAIGSLVVDIGGGTTEVAVVALGGVVYREAIRIGGEQFDAAIISHVRALYGVQLGEQTAEHVKKTIGTASAGVPRETMRVVGRSAVDGLPRTIELSNHDVADALAAPLNAVVSAVKRTLENAPPELVTDIADGGIVLTGGGSLLANLGKRLRDETGLAARVADDPLTCAVRGAAAAMGRVPMRAAA
>NZ_CP009486.1|WP_045563780.1|86488_88879_+|patatin-like-phospholipase-domain-containing-protein
MTAPDSYRWREVRRLCPMLAALWCCAAIAQPAPAAGASAAPDAAALPNASHACRPDGGPDGRPAVGLVLSGGGARGYAHLGVLKVLEDNRIPIDCIAATSMGAVVGGLYASGMAAAEMQKRLSETNLADIAFDATERADLPQSRREDERLYANGATLGFSGKGVKAPAGIVQGNRLQALLADWTAAVPINQPFDKLPIPYRAIATDLQTGQMVVLDHGSLPLAIRASMAMPGLFAPAEINDRALVDGGLVRNLPVDSARQMGADVVIAVDIGSQLRPLDALASPADVAQQMVGILIRQNVAAQRKQLAPQDVLLTPELGTLTFTDFQKANEAIAAGAAAATAALPRLKRYALTQEQYAAYRAAHTQPQPPAIRITDIEIRTNGGVPQRVVRDALHVKPGDTYDPKAVSRDLLTLTTGGNFESVTQQVVSNGDENRLVIDAREKYWGPNFLLFGLGMSSSSTDQGGFRLHVGYRRPWLTESGLEFRTDATVGSDLNAVHVELRQPLSVKYGDYIAPYAEYQRRYANLYDDTGDVKVTQYMIQTARAGIDFGVPIGRLGDFRIGLAYTHSHGSPTYNLPLQLLDSDVTGQTALLFPSYSADALSARARLVIDQLDDPMFPRKGYFAEFRVERSLMSRNGASSDTVDSRITDAPYTEVYGKLMVAQQFGRHSVSAGVEGGKSIGGTNLINAFNFTLGGFQHLAAYAADQLNGDSLVYGQITYMNQLATFSSSPVKALFVGASAEVGNVWAGGARIGGGALKQSYTFFTSLTTAFGPLYMGVALAPGGRRNIYLQLGRTY
>NZ_CP009486.1|WP_042588383.1|88915_90046_-|two-component-sensor-histidine-kinase
MIKRPAAHPDAPRLSPLRYVRWRWMHFRRAWTDTRADRIPSWSRLYVRTYLHLLGLVLLTALVPALALCVVLSPHLVWHAFDALPGDVWLVLAFVFAAPALAAYRWMRPVWSDLVMVRERAIDFTGGRFNTRARESHSVIIGPLARTLNALAMRMERLIAAQRDLTNGISHELRTPLARVRFALEILREPGSAAEYESALDGIAQDVTELDELIDMSLTYARLEYSSLQSNLEPTALAAWLEHQVNDAALLYPEKTIETRIAIATDVRVEMDRRLMSYAMRNLLRNASKYARSRIVVGIAIDHGNIGIYVEDDGPGVPESERERIFEAFVRLDRRTGGYGLGLAITRQVLQAHNGRIAVVDPAELGGARFEISWPA
>NZ_CP009486.1|WP_042588384.1|90122_90833_-|response-regulator
MSFRILLVEDDTRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSIRPDLVILDVNLPGKDGFEICREARKQYDGVIIMVTARDEPFDELLGLEIGADDYVHKPVEPRILLARIKAQLRRTPARAADSSAPQPERYTFGKFSIDRTGRTVMLPDGSAPDLTSAEFDLLWALVCHAGEVVSRDDLMLQLRGVEFDGLDRTIDGRISKLRRKLRDDASNPQRIKTIRSKGYQFSKHAWD
>NZ_CP009486.1|WP_045563781.1|91056_91971_+|glutaminase
MNYQPILERIHTELAPWIGQGRVADYIPELAKVPADKFGMAVVTLDGNVYTVGDARERFSIQSISKLFACTLAFQLLGDALWDRVGREPSGNAFNSLVQLETERGKPRNPFINAGALVVTDVLCRRFVKAETALVEFVRRLIGAADIDYDSRVALSELQHAERNRAMAHFMASFGNMQMPPETVIDAYCRQCAIEMNCVELARAALFLANGGIAPVTGERIVDSSSAKRLSALMLTCGTYDAAGDFVYRVGLPAKSGVGGGIVAVLPGEMAVCVWAPGLDANGNSLAGTRALEWLTTYSGRSIF
>NZ_CP009486.1|WP_157379808.1|91946_92090_-|hypothetical-protein
MLTDAHWKLPKGEFSVALADARRYRPAAVAPDQSRLTSALQKIDRPE
>NZ_CP009486.1|WP_052686435.1|92098_93550_-|hypothetical-protein
MLHSFFYPATLMAFEAVIKTDPQCAIAYWGLAMAQPPNPLVPPFDEAALKRGSDAVEKGLALGPKTERERDWLLAAEAFYKDYDKVPQSQRTSAYEHAMARLTQKYPGDSEAAIFYALALDEAAPPSDKTYANQLKAAAILEKIYREQPDHPGIAHYLIHSYDYSPLAQRGLPFADKYAQIAPAAPHAVHMPSHIYSMLGMWAASVKSNEAALKVMREEAARSWPGATHPSAPHSWDFMEYAYLQLGQDARARQVRDDADAATKFPFDRLVTYTGLAAVPARYALERGAWQEAAALEPRGSRWPQAEAITYFARALGCARGGKADMAQTNIDMLTQLRAKLEQSGQPYWAEQVQVQILAASAWLAHAQGKDEDALKQMRAAADLEDGSEKNVAMENRLYPMREQLGEMLLDLKRPADALKEYEASMQATPNRLRGLYGAATAADLAQDRQKAKLYYGKLVVLTREADSNRAEVRQAKLYLDQH
>NZ_CP009486.1|WP_088500864.1|93876_94521_-|response-regulator-transcription-factor
MSPLRVAVVAASSQVRASLQALVDATPTLDFAGSAADAAAIADRFAGEWPDVVLVELEPQAGDWPMSGADRHPAMPALVLLTDDADSDWIHDALAGGATALLPRGATRGEITAAIEAVAAGLCVLSPETLARLLAQRKAPRQTASAMLVEMLTPREIEVLTMLAEGLGNKEIARQLDISDNTVKFHLSSIFGKLGASSRTEAVMQGMRHGLIMV
>NZ_CP009486.1|WP_045563783.1|94564_95503_-|serine-protease
METPTPGGNPLQDLSANLAAIAERVGQSVVAVHGRHRFPSSGVIWQPGVVVTAAHTLRYEEGIEVSLADGRTVAAVLAGRDPGTDLAVLRMGDVASSPVETGDARSLKAGHLVLAVARVDRFGASADFGVVGTAGGPWRTWRGGQLDAFVRLDGGLRPGFSGAALADMQGRVMGLCTSALAPGAGMLIPASTVARVCDELSRKGRVSRGYLGVGTQTVNLPQAWVTKLNLASGRGLLVVSLAAGGPAEQAGVLIGDVLIELDGQPCRDMDDVHAALGGERIGQSLKIGLIRGGERSECTVTVGERPQRNSCC
>NZ_CP009486.1|WP_045563784.1|95801_96701_+|LysR-family-transcriptional-regulator
MTLAQLQALAAVVELGSLTAAADRLSRSQSAISHALTELEDITQVKLLVRDRQPVVLTAAGERLWPYIRNVVREAQTLRQQFSLSRGKLEGRLVVASLPSVSLAFVVPALEALKAMHPGVSAVLLEGTDMEVEGWIEDGTADVGVVAGAKTFANNLPLLDEDFVAVAAAGTFDGRKSVSAKQLSALPFIFSKAGCGPVIADYFARGGAQLRAAFNVVEMRTILSMAEAGMGVSIVPRVTLTYTPFGGKVLELSPRLHRSVRLSWNTTGNAVTDEFVRLAATQRAKAAQATKTRAKKGKQ

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Crispr_ID: NZ_CP009486_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009486_3

2678462-2678536

Orphan

Consensus_repeat	Method
CCGTCGCCGTCCGCCTCCGCGACGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009486_3

>merge|NZ_CP009486|3|2678462-2678536|CRISPRCasFinder
CCGTCGCCGTCCGCCTCCGCGACGCCGTCCGCGAGTCCGTCGCCAACCGCGTCGCCGTCTGCCTCCGCGAACCCG

>NZ_CP009486|3|3|2678462-2678536|CRISPRCasFinder
CCGTCGCCGTCCGCCTCCGCGACGCCG	TCCGCGAGTCCGTCGCCAACC
GCGTCGCCGTCTGCCTCCGCGAACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009486.1\|WP_045565239.1\|2683483_2684788_-\|type-III-secretion-system-inner-membrane-ring-subunit-SctD	unknown	unknown	gnl\|CDD\|274166
NZ_CP009486.1\|WP_045565237.1\|2681602_2682484_-\|type-III-secretion-inner-membrane-ring-lipoprotein-SctJ	unknown	unknown	gnl\|CDD\|274190
NZ_CP009486.1\|WP_088502227.1\|2680844_2681585_-\|SctK-family-type-III-secretion-system-sorting-platform-protein	unknown	unknown	gnl\|CDD\|284089
NZ_CP009486.1\|WP_045565231.1\|2661726_2663694_-\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|132152
NZ_CP009486.1\|WP_045565241.1\|2687082_2689269_-\|type-III-secretion-system-export-apparatus-subunit-SctV	unknown	unknown	gnl\|CDD\|376386
NZ_CP009486.1\|WP_042588297.1\|2654275_2655199_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NZ_CP009486.1\|WP_045565235.1\|2678857_2680237_-\|type-III-secretion-system-ATPase-SctN	unknown	unknown	gnl\|CDD\|224079
NZ_CP009486.1\|WP_045565240.1\|2684768_2686808_-\|type-III-secretion-system-outer-membrane-ring-subunit-SctC	unknown	unknown	gnl\|CDD\|274174
NZ_CP009486.1\|WP_010099708.1\|2660211_2660880_+\|type-III-secretion-system-export-apparatus-subunit-SctR	unknown	unknown	gnl\|CDD\|237210
NZ_CP009486.1\|WP_042588305.1\|2680233_2680863_-\|type-III-secretion-system-stator-protein-SctL	unknown	unknown	gnl\|CDD\|180763
NZ_CP009486.1\|WP_045565510.1\|2655850_2658058_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP009486.1\|WP_010089798.1\|2655386_2655848_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP009486.1\|WP_045565229.1\|2659059_2660208_+\|type-III-secretion-system-cytoplasmic-ring-protein-SctQ	unknown	unknown	gnl\|CDD\|274196
NZ_CP009486.1\|WP_045565230.1\|2660876_2661683_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP009486.1\|WP_042588308.1\|2683131_2683341_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009486.1\|WP_042588311.1\|2686807_2687086_-\|type-III-secretion-system-export-apparatus-subunit-SctS	unknown	unknown	gnl\|CDD\|130470
NZ_CP009486.1\|WP_045565228.1\|2658417_2658816_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|294013
NZ_CP009486.1\|WP_045565233.1\|2665034_2665844_-\|type-III-secretion-system-export-apparatus-subunit-SctT	unknown	unknown	gnl\|CDD\|130468
NZ_CP009486.1\|WP_045565238.1\|2682551_2683019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009486.1\|WP_045565232.1\|2663992_2665024_-\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	unknown	unknown	gnl\|CDD\|376521

Protein	Function_ID	Function_description	E-value
NZ_CP009486.1\|WP_045565239.1\|2683483_2684788_-\|type-III-secretion-system-inner-membrane-ring-subunit-SctD	gnl\|CDD\|274166	TIGR02500, Yop_proteins_translocation_protein_D, type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.03992e-76
NZ_CP009486.1\|WP_045565237.1\|2681602_2682484_-\|type-III-secretion-inner-membrane-ring-lipoprotein-SctJ	gnl\|CDD\|274190	TIGR02544, YOP_proteins_translocation_lipoprotein, type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.58864e-84
NZ_CP009486.1\|WP_088502227.1\|2680844_2681585_-\|SctK-family-type-III-secretion-system-sorting-platform-protein	gnl\|CDD\|284089	pfam06578, YscK, YOP proteins translocation protein K (YscK). This family consists of several YscK proteins. The function of this protein is unknown but it belongs to an operon involved in the secretion of Yop proteins across bacterial membranes.	2.55212e-06
NZ_CP009486.1\|WP_045565231.1\|2661726_2663694_-\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|132152	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.	9.03174e-172
NZ_CP009486.1\|WP_045565241.1\|2687082_2689269_-\|type-III-secretion-system-export-apparatus-subunit-SctV	gnl\|CDD\|376386	pfam00771, FHIPEP, FHIPEP family.	0
NZ_CP009486.1\|WP_042588297.1\|2654275_2655199_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	5.63141e-58
NZ_CP009486.1\|WP_045565235.1\|2678857_2680237_-\|type-III-secretion-system-ATPase-SctN	gnl\|CDD\|224079	COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP009486.1\|WP_045565240.1\|2684768_2686808_-\|type-III-secretion-system-outer-membrane-ring-subunit-SctC	gnl\|CDD\|274174	TIGR02516, type_III_yscC, type III secretion outer membrane pore, YscC/HrcC family. A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	8.05748e-124
NZ_CP009486.1\|WP_010099708.1\|2660211_2660880_+\|type-III-secretion-system-export-apparatus-subunit-SctR	gnl\|CDD\|237210	PRK12797, PRK12797, type III secretion system protein YscR; Provisional.	2.02413e-102
NZ_CP009486.1\|WP_042588305.1\|2680233_2680863_-\|type-III-secretion-system-stator-protein-SctL	gnl\|CDD\|180763	PRK06937, PRK06937, HrpE/YscL family type III secretion apparatus protein.	1.47456e-33
NZ_CP009486.1\|WP_045565510.1\|2655850_2658058_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	1.00397e-149
NZ_CP009486.1\|WP_010089798.1\|2655386_2655848_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.9146e-79
NZ_CP009486.1\|WP_045565229.1\|2659059_2660208_+\|type-III-secretion-system-cytoplasmic-ring-protein-SctQ	gnl\|CDD\|274196	TIGR02551, translocation_protein_Q, type III secretion system apparatus protein YscQ/HrcQ. Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	8.10973e-22
NZ_CP009486.1\|WP_045565230.1\|2660876_2661683_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	2.93786e-80
NZ_CP009486.1\|WP_042588311.1\|2686807_2687086_-\|type-III-secretion-system-export-apparatus-subunit-SctS	gnl\|CDD\|130470	TIGR01403, Secretion_system_apparatus_protein_SsaS, type III secretion protein, HrpO family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.16101e-16
NZ_CP009486.1\|WP_045565228.1\|2658417_2658816_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	1.28438e-27
NZ_CP009486.1\|WP_045565233.1\|2665034_2665844_-\|type-III-secretion-system-export-apparatus-subunit-SctT	gnl\|CDD\|130468	TIGR01401, Secretion_system_apparatus_protein_SsaT, type III secretion protein SpaR/YscT/HrcT. This model represents members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (TIGRFAMs:TIGR01400). [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.7561e-47
NZ_CP009486.1\|WP_045565232.1\|2663992_2665024_-\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	gnl\|CDD\|376521	pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.	6.56932e-100

>NZ_CP009486.1|WP_045565233.1|2665034_2665844_-|type-III-secretion-system-export-apparatus-subunit-SctT
MLDQVTGFNDVAAALRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGIAVVIAAFVAPAIDPAQVAALPFLMWCLLVAKEAVVGVLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFDWMVKLSAPVVIVLVLVELGIGLVGRAVPQLNIFVFAQPVKSVLAMLMMMLFLPVVYASLHALLSPDSGLMALLRALFAPHGAT
>NZ_CP009486.1|WP_045565232.1|2663992_2665024_-|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein
MAEKDQKPTAKRLREAREKGDVPKSAETISTAFFVGTCVALAVGLGALFERLQGLFRLVFDAAGAADPGARLAALVGSAARDWMTLSAEIVGAGLALGLLAGFVQVGGVMAWSRLVPQLSRLNPAEGLKNMASLRNVVNLVKMLLKTVLLVATLGWLIVESLDPAVQSGFTRPMSILALIMKLLMLLFGWAALVYVAMAIIDIVHQHHEFNKKMKMSIDEVRREHKDDEGDPHIQAKRRQLARELQYASLQDRIDFASVVVYSSRVAVALYYGGMGSLPWVLARGEGEAAERIVRLARDALRPTLANVGLAQALYDSTPENGTIQPRHFREVAALLKWATGAN
>NZ_CP009486.1|WP_045565231.1|2661726_2663694_-|asparagine-synthase-(glutamine-hydrolyzing)
MCGIDGFLNSAAFDEETARATLARMTASLAHRGPDAQGTWLDAQAGIALGHRRLAIVDLSVHGRQPMASVCGRFVLVFNGEIYNHRALRAELERTGRAPAWRGHSDTEVLLAAIAAWGVEAALRRATGMFAIALWNRESRVLTLARDRIGEKPLYYGRIGDALVFASELKALRSFPGFDGAIDRDALCLYLRQSSVPAPYTIYRGIRKLPPGTFIQFEHARDTPRARAYWTLEHAIEAGRAEPFEGTAQEAVGLLDGILRKAVAQQMEADVPLGAFLSGGVDSSAIVALMQAQSAAPVDTFTIGFHEAGYDEAGYAKAVARHLGTRHTELYVTADHALAVVPKLPSIYDEPFSDASQIPTFLVAELTRRHVKVSLSGDGGDELFGGYTRYFLTPRLWRKLHRVPAAVRARIAAALHALRPDHADQLAAVAQSAWSGAEARETPPRIGDRLHKLGHVMTADSRIGLYRLLMSAVHHPERIALAGQEPPTPLDTASAWPADLTFAEQAMAIDTLTYLPTDILTKVDRAAMAVSLETRMPFLDHHVVEFAWRLPAALRLPDGRSKVLLRRLLDAYVPASLIDRPKQGFCAPIDHWLRGSLRDWAQTLLHPARLREEGFFDAAAVERLWRQHQTGRMNWQHQLWTVLMFQAWLEAQRAA
>NZ_CP009486.1|WP_045565230.1|2660876_2661683_+|lytic-transglycosylase-domain-containing-protein
MSARGPRRNGASKACSLVIAACVLAPCMPERAQAAPRVVPPAGFAQLARACAPNVDPQTLAALIRTESGFNPFAIGVVGARLTRQPASLAEAQATTRALAARGISYSVGLAQVNERNFAKYGLDESTMFEPCRNLQAGGAILTECFARSSGTGRPAQAALQAALSCYYSGNFTTGFSSGYVSRVIASARSNAREGGVEPIPLARDEPPPARRRRIAAAATAPPEPTRRPVSPPASVDAPSCRARPVVMMCRGLEAAEAKRLCVRCLDQ
>NZ_CP009486.1|WP_010099708.1|2660211_2660880_+|type-III-secretion-system-export-apparatus-subunit-SctR
MGSLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQQRHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRAEGVKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMISPTTISVPFKLLLFVALDGWAMLVHGLVLSYRVAG
>NZ_CP009486.1|WP_045565229.1|2659059_2660208_+|type-III-secretion-system-cytoplasmic-ring-protein-SctQ
MHALSLTNADADDAADRASPLAPAPSTAAAVPLDASPHLPRLSAAAARGLSYAYGAMAAVPLTLGDHAYEARWRVDAQPAAGAHAYRFVVGPATGTLWIDPAAEAEWLGDAADPAVPAVIRAALLADLGAPLSAALQAATRQRVELLPPPPSPPAWRAAPAALRFELRRADGAWRCHGAVLFDAPDALAVFFAERPAARPDARAVYAGLPVPLVFEIGRTELTTAELADVVAGDIIAIEHWRAHEQNLLCVARLPAAPAWEITGRPSGNRLTVERIREMPLEPTRTDTPPTLSPDAPPHEAPRTLDALAVDLRFELPSTSMPLGELAVLQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVVTLTQPAPRER
>NZ_CP009486.1|WP_045565228.1|2658417_2658816_+|winged-helix-turn-helix-transcriptional-regulator
MDCKYLYIDNIKINFVRRTIEIDDKPVDVTPREFDVVEFLLDNMNKIVPRQAIQEAVWGRELAVSSRTLDTHISRIRAKLRLDHDKNLRIIPIYAVGYRLVLFGAAMTHAERHDPAPAVRAVSQHDRVADYV
>NZ_CP009486.1|WP_045565510.1|2655850_2658058_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTIGIDSPNAVRPARRTFLKAAGAAAVSLTVGFEWFGLGRRALAATTPAAGFAPNAFLRITPDGLVTVVAKHVEMGQGAYTGIATIVAEELDADWSSVRVESAPADAKRYANLAFGTMQGTGGSSAMANSWQQLREAGGKARAMLVSAAAARWNVPAGELTTKDGFVIHAKTGRQAGYGTLVAQAAKLPVPDKVTLKQPAEFRLIGHKIPRVDAAPKSDGTAQFTLDVTFPGMLVALLQRPPRFGATVKSFDASGAKAVPGVVSVVQVPRGVAVVATGFWAAKQGRDALKVEWDDTHAEKRGSDAILREYRQLANQPGAPARTDGDAGAAIAGAARKLSATYEFPYLAHAPMEPLDAVVKLTPDGCEIWAGDQFQTIDQANAAQVAGLKPEQVKIHTMYAGGSFGRRANAWSDYVVEAVSIAKALGANGKPVKLQWTREDDITGGLYRPMYVHKLDAGLTADGKLVGWRHRIVGQSILAGTPFEAVMVKNGIDATSVEGAANLPYAVPNVSVELTTTKAGVPVLWWRVVGSSHTAYAVEAFIDEAAHAAGKDPYAFRRDLLAKEPRMRAVLELAAGKAGWDPAKPLPKGRGRGIAVAEAFKSYVAQVAEVSVGADGKVKVERIVCAVDCGIAINPDIVAAQMEGGIGFGLGAVMHSAITLKDGQVEQRNFDGYQVLRIAEMPKVEVYVVPSAEAPTGVGEPGVAPVGPAVANAIFAATGKRHYTLPFDSGDGAKA
>NZ_CP009486.1|WP_010089798.1|2655386_2655848_+|(2Fe-2S)-binding-protein
MSTSFVLNGKNVTLDVDPTTPVLWAIREHAGLTGTKFGCGMAQCGACTVHLEGQAVRSCVLPVAGIAGKHVTTIEGLQSKPARAVQAAWVKLQVPQCGYCQSGQIMSATALLEQNPKPTDADIDAAMNGNICRCATYARIRAAIHDAAATLGA
>NZ_CP009486.1|WP_042588297.1|2654275_2655199_-|AraC-family-transcriptional-regulator
MDLTDIAASRESGRRELAALISRFAPVDGSHATAIPALAFHKHTHPVDLGCGVSRAAFVLAAQGAKRVVVADQAYEYDTQHCLITSIDLPILSRVTKASPDAPYLCLSLALDPQRIVELAAEMRLPDAQPGPEGEGIALAELTPPLLDAALRLVRLLDAPADIPVMAPLIEKELIYRLMTSEQGARLRHMAVAGSQTHRIARAIEWIRDHFAEPMRVETLAQAVNMSVSSLHHHFKNVTTLSPLQYQKQLRLHEARRLLLRQGGDVGSVAATVGYESASQFSREYSRLFGAPPLRDVVQLRRKELLG
>NZ_CP009486.1|WP_045565235.1|2678857_2680237_-|type-III-secretion-system-ATPase-SctN
MSAPLDEAGAPAGDGDAAPFDRGRLVGELDAGLAFFSPVSVQGRVNHAVGQILNATGIRARLGEICELRTPGQPTLLAEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHVFAVGEGLYGRVLDGLGRPLDARGPVTGAAWVSTQQDPPNPLARQMIDTPFPTGVRVIDGLMTLGVGQRVGIFAPSGVGKSTLLGMIARGARADVNVIALVGERGREVREFIEHALSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDEGKRVLLLVDSLTRFARAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGARGSITALYTVLVEGDEESDPIAEEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVANRAHQQAAARVRELIAKYQEIELLVQIGEYREGSDRLGDLALRARDAIAAFCAQASHEDVRFDALLARLTKLANDHA
>NZ_CP009486.1|WP_042588305.1|2680233_2680863_-|type-III-secretion-system-stator-protein-SctL
MGLAFLITSDNLQLLSERKVLKEREYAALLDASAVIATAHEEAARIVADAQREFDRRQAAGYEEGMRRAQREQAAQAYAQSLAAARTMESMKDAMAEIVVKAVRAIVGEMSTQTLYAAALARIAPLVRDEAFLTVRIAPGREDEMREALAGAFAGQSNRQKIRIVEDAQLERHACTVETPSGRIDASLDLQIDALRQAIRRDALKGAAR
>NZ_CP009486.1|WP_088502227.1|2680844_2681585_-|SctK-family-type-III-secretion-system-sorting-platform-protein
MAAGDPAAGDPAPGAAPLPWLQPLAPPPAARRAAFHRLVCDFNLRPDRYLHVTRVPADWPARYRSPDAFGPAGQKLVARHLLDAHDVAGRHDFDAANPCARLALLPGAALEQLASYAGLLLHRAWLRDALAVRRMRAEVAAKLGGDALDLALERAPEFGALADTLDPWRGEPAALPAVIRARGGRLLADFIGAAGDAVARRVTLKFNRAIDAEAPYWLNRAQRDQFGELLFLFLIPERLASWDWLF
>NZ_CP009486.1|WP_045565237.1|2681602_2682484_-|type-III-secretion-inner-membrane-ring-lipoprotein-SctJ
MTTIDSTPRAAAWRSRAARALLAGLLVLLAGCQKELYSGLSEADANQMIAVLGDAGIGASKDNDARDTSERDAWQVSVADGDLHAALSVLRANGLPKPRHASLGELFQKQGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPENDPLADKIRPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLFLQPAAERAARVDGIGSALADIVRLRSPLGWLVFALILLTGAVIALSAARRGMFGARLAGLLGVARGAQANANGSAGGGSLRTPDGARDGA
>NZ_CP009486.1|WP_045565238.1|2682551_2683019_-|hypothetical-protein
MSVTGVSVAPGAAALASGAQQQAGAASDPAQVRQFDALMQPGASPGGAAPAAPASVPSDASPAVRMTPAQANHSSLVERLRTYGNDLDARYANIDKHRTEMLTSMADNRSDPLMTMVKAMDFQWTATTTISEYQLSLSVAQAANGFTHTVLKTQE
>NZ_CP009486.1|WP_042588308.1|2683131_2683341_-|hypothetical-protein
MGASTGGVTNTGDVQKQADDLTKTQLELTKINFQVQQSTATFETSNAVTAQEGTANAQVAQHLSSAGRA
>NZ_CP009486.1|WP_045565239.1|2683483_2684788_-|type-III-secretion-system-inner-membrane-ring-subunit-SctD
MSTTAIDPHGDGALPGGAAALASPWNLCFLSGPMYGRTMSLARGANWIGTSADCEVILPDREIGAKQVCLQVGALAVTVQNHGGDALAPVLFNDAPLGASRRSLTPQDVVTIGTIRLGIARHAHASVAVPDETGAPEAAREAAWLGWLTGGLRRLGSRRLVIAVVALWVGVLLGALGYGLVAWSGRLPWQHESVLARTHRLQRLLHAYPELAVSPRDDGALVSGYVSDAAARERVAQIVAGVDNAALGNLYVVSDLVATAQTYFSDTALTVTYLGRGRIELTGAAARAQIEPRIRNYMKDARPALEVVDHVRDAEAAAPRTTATLGGSAGIPEITTVFAGDGDQRYIETVDGSRYFEGAKLKEGPTVVSIGADEVVFERNGQRITVPLGVAPAPPVPPVPPVASGAAAGVAQPVPGPALPPDANAPAPASGAAR
>NZ_CP009486.1|WP_045565240.1|2684768_2686808_-|type-III-secretion-system-outer-membrane-ring-subunit-SctC
MRRRVASVWFQSRGLQRAALALCATALLSASLCMMLAQPARAADLRWRNKPFTIVANGKKIADFIRELAASQGVTAIVDPKVDGVISGRFSGTPQQTLDTICSTYGLTWYYDGSFLYVDPADQSQTQMIPIPPNAAGEIGRALQAMQVADKRFTLVINDRANSVYVAGPRRYVELVRQAIGTVGDPAANGQHADVRAFRLKYGWASDVTINRSGREVVVPGVATILRRLFGKGGGGTNLVPASAPLGQAARQVKLGSGLTIAVPRLDFPDISGGPRSGGYGGGYASDGAGAFSPFASAGGGDTLPQIEADPAINAVIVRDLPENMYRYQSLIGQLDERPRIVEINVTIIDINEDSLDSLGIDWRLHTKHGDVQIGNGANPLTGNTQFGGAGNPPLTFGIDTSEAGQIGAFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTTGTSIKVTPMIVDEAARAAAAGGPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKTGNHMERFYLLTPRVVTTASMYAPDGSPVNPGLAVPPNPDGLSMYRPPDNDVAVPLTPKPLPGTKFGPPALPPPKDAAAQPAMTAGAPAHVDDRH
>NZ_CP009486.1|WP_042588311.1|2686807_2687086_-|type-III-secretion-system-export-apparatus-subunit-SctS
MTGSAILDLTRQALMLVLLLSLPIVAIATVTGLVVAILQAVTQVQDANLGMAVRLIAVMVALVLLSGWLGGEVLRFAQQALERMFVSSTGVF
>NZ_CP009486.1|WP_045565241.1|2687082_2689269_-|type-III-secretion-system-export-apparatus-subunit-SctV
MAEPKALPRDWQRMFSAGRGVSGRRLGASPRADLFLAAFIVAVVALFILPLPQIALDGMISLNLAVSVVLLTVSTYVPSAVSFSSFPALLLFTTLFRLALNIASCKLILLHANAGHVIDAFGRLVVGNNVVVGGVVFLVIAVVQFIVIAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERREKLEQESQMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMGIGDALQRYAILTVGDGMASQIPSLLVSIAAGIVTTRVATRDARQRQLGEQLGEQLGAHPRALLIAALVLAGFLVVPGFPKWSFALIAAGLGAFAFTQLKRKTAAPSFNLIHVAGRVGAADDGQPAKAAHAAGVTSLIAVSLSDDLRTSLNLAQLQAALASAKARVDADVGTVFPRLTLNDDEGAAAGTYRIYLQDVLAASGALKPGWLLWDGASPLPERAERQPAEAFGPFPTALWIKPDGAAPDAKWLTSEAALAAHVEQIVRRHADELLGIQETQALVHLVRRDHPELVGELTRLVPLQRVTDVLRRLLAEQVPIRNLRVIFESLITWAPNEPDDVVALVELVRVDLRRMITDRHAGAARQLRVVLFEQNLQERIESAVMRTKQGNFLALSSAMKQDICEQVRAIVQAAGANGPHGAARLAVMVALGARRYVKTILQPVLPELAVLSYQEVEEDVQLHTIGWVKNPPDDGTVGAGAEVRAPGAAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

353958 : 426929

uncultured_virus(22.22%)

holin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045565287.1\|353958_354984_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_045563935.1\|356058_357939_+	ATP-dependent endonuclease	E5E3R2	Burkholderia_phage	2.5e-284	81.0
WP_059920973.1\|358809_360078_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.3e-39	43.3
WP_045563940.1\|360360_361383_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_045563941.1\|361408_363076_-	hydroxylamine reductase	NA	NA	NA	NA
WP_010089345.1\|363250_363451_-	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_045563942.1\|363532_364342_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.2e-08	37.0
WP_045563943.1\|364522_366589_+	c-type cytochrome	NA	NA	NA	NA
WP_042588600.1\|366738_367425_+	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	NA	NA	NA	NA
WP_042588601.1\|367459_368416_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_045565288.1\|368495_368894_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_045565289.1\|368922_369861_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_045563944.1\|370004_370430_+	PACE efflux transporter	NA	NA	NA	NA
WP_080340558.1\|370503_370914_-	hypothetical protein	NA	NA	NA	NA
WP_042588605.1\|371252_372203_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_162487840.1\|372308_373289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_042588607.1\|373445_374342_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_073563892.1\|374334_375432_-	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-27	33.8
WP_052686397.1\|376233_377208_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_045563946.1\|377265_378825_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.3e-81	36.8
WP_045563947.1\|378856_379831_+	isoaspartyl peptidase/L-asparaginase	NA	NA	NA	NA
WP_045563948.1\|380194_380845_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_010089329.1\|381060_381276_+	hypothetical protein	NA	NA	NA	NA
WP_045563949.1\|381372_382272_+	hypothetical protein	NA	NA	NA	NA
WP_162487841.1\|383625_392739_+	hemagglutinin	NA	NA	NA	NA
WP_045563952.1\|392840_393515_+	OmpA family protein	NA	NA	NA	NA
WP_045565296.1\|393917_395063_+	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_045563953.1\|395077_396232_+	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_045563954.1\|396255_397392_+	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_045563955.1\|397410_397782_-	hypothetical protein	NA	NA	NA	NA
WP_045565297.1\|397862_398663_-	EAL domain-containing protein	NA	NA	NA	NA
WP_045563956.1\|399184_400327_-	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_045563957.1\|400487_402485_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_045563958.1\|402534_403320_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_042588622.1\|403337_404945_-	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	6.0e-21	56.3
WP_045563959.1\|404986_406168_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_088502216.1\|406365_407088_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_045563960.1\|407406_409569_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_045563961.1\|409726_410518_+	hypothetical protein	NA	NA	NA	NA
WP_080340559.1\|410541_411609_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_045563962.1\|411658_412369_+	c-type cytochrome	NA	NA	NA	NA
WP_162487818.1\|412365_413361_+	c-type cytochrome	NA	NA	NA	NA
WP_045563963.1\|413648_415565_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_139253459.1\|415622_415823_+	hypothetical protein	NA	NA	NA	NA
WP_042588631.1\|415980_416412_-	GFA family protein	NA	NA	NA	NA
WP_045565300.1\|416451_417645_-	porin	NA	NA	NA	NA
WP_052686401.1\|418125_420867_+	AAA family ATPase	NA	NA	NA	NA
WP_045563964.1\|420893_421433_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_080340561.1\|421546_422008_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045563965.1\|422072_422684_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_045563966.1\|422702_424025_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.3e-10	25.8
WP_045563967.1\|424021_424762_-	response regulator	W8CYM9	Bacillus_phage	2.6e-27	34.4
WP_045563968.1\|425002_425578_+	thioredoxin family protein	NA	NA	NA	NA
WP_045563969.1\|425660_426929_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.3e-42	42.7

DBSCAN-SWA_2

1306370 : 1362752

uncultured_Caudovirales_phage(25.0%)

plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045564485.1\|1306370_1306802_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_045564486.1\|1306814_1307477_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_060212190.1\|1307473_1308820_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_045564488.1\|1308877_1310266_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_045564489.1\|1310527_1312879_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.4e-10	31.0
WP_157641991.1\|1312883_1313729_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_045564491.1\|1313791_1316446_+	hypothetical protein	NA	NA	NA	NA
WP_045564492.1\|1317069_1317510_+	hypothetical protein	NA	NA	NA	NA
WP_045565392.1\|1319473_1319914_+	hypothetical protein	NA	NA	NA	NA
WP_071753798.1\|1319981_1320233_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_045565393.1\|1320312_1321509_+	hypothetical protein	NA	NA	NA	NA
WP_045564493.1\|1321505_1325036_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_045564494.1\|1325052_1326867_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_045565394.1\|1326965_1327946_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_045564495.1\|1327992_1328637_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_162487828.1\|1328784_1329504_-	hypothetical protein	NA	NA	NA	NA
WP_010098089.1\|1329510_1329942_-	hypothetical protein	NA	NA	NA	NA
WP_045564497.1\|1330030_1331632_-	tyrosinase family protein	NA	NA	NA	NA
WP_045564498.1\|1332221_1333100_+	hypothetical protein	NA	NA	NA	NA
WP_162487829.1\|1333099_1333270_+	hypothetical protein	NA	NA	NA	NA
WP_080340651.1\|1333343_1335134_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_045564499.1\|1335179_1337147_-	glycosyltransferase	M1HVH2	Acanthocystis_turfacea_Chlorella_virus	3.8e-25	26.4
WP_042588732.1\|1337149_1338487_-	hypothetical protein	NA	NA	NA	NA
WP_045564500.1\|1338507_1339971_-	multidrug transporter	NA	NA	NA	NA
WP_042588734.1\|1340718_1341123_+	TIGR02594 family protein	A0A249Y3Q7	Serratia_phage	1.7e-28	43.7
WP_045564501.1\|1341151_1342588_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_045565396.1\|1342598_1344173_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_045564502.1\|1344204_1345296_-	HlyD family secretion protein	NA	NA	NA	NA
WP_010098074.1\|1345360_1345792_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_045564503.1\|1345841_1346780_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_042587257.1\|1346881_1347310_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_045564504.1\|1347564_1348812_+	aconitase X catalytic domain-containing protein	NA	NA	NA	NA
WP_045564505.1\|1348804_1349290_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_045564506.1\|1349406_1350516_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_045564507.1\|1350593_1352627_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_042587262.1\|1352665_1353070_-	DUF2471 domain-containing protein	NA	NA	NA	NA
WP_045564508.1\|1353226_1354120_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_045564509.1\|1354207_1354996_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_045564510.1\|1355003_1355429_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_045564511.1\|1355425_1358155_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.1e-86	31.6
WP_006479553.1\|1358294_1358780_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_045564512.1\|1358872_1360621_-	OmpA family protein	NA	NA	NA	NA
WP_045564513.1\|1360647_1361403_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_045564514.1\|1361399_1362752_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009488

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

928166 : 936844

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045566553.1\|928166_929612_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.6e-52	28.2
WP_045566554.1\|929864_930761_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.8e-27	36.3
WP_045566555.1\|930757_931309_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.0e-48	51.9
WP_045566556.1\|931293_932187_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.7e-97	58.1
WP_045566557.1\|932198_933260_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.1e-86	47.7
WP_045566558.1\|933753_935106_+	FkbM family methyltransferase	NA	NA	NA	NA
WP_045566559.1\|935102_935726_+	acetyltransferase	NA	NA	NA	NA
WP_045566560.1\|935740_936844_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L470	Tupanvirus	1.2e-44	33.7

DBSCAN-SWA_2

1045901 : 1058910

Bodo_saltans_virus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063889959.1\|1045901_1047092_+	Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter	A0A2H4UVM2	Bodo_saltans_virus	4.0e-06	25.0
WP_045566627.1\|1047187_1048243_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.4e-71	45.6
WP_071733195.1\|1048268_1049207_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_042583174.1\|1049218_1049896_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_045566628.1\|1049901_1051422_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	1.4e-24	33.3
WP_010091451.1\|1051455_1052001_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_042583172.1\|1051997_1052684_+	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	5.2e-06	24.3
WP_045566629.1\|1052725_1053541_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	6.3e-35	30.5
WP_045566630.1\|1053685_1055563_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	4.2e-58	37.1
WP_042583169.1\|1055567_1056701_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.1e-24	38.2
WP_045566631.1\|1056957_1058910_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	3.5e-148	49.2

DBSCAN-SWA_3

1371155 : 1419891

uncultured_Caudovirales_phage(57.14%)

transposase,plate,integrase

attL 1414853:1414901|attR 1419986:1420034

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042582990.1\|1371155_1372256_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_042582989.1\|1372219_1374055_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_042582988.1\|1374120_1374606_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_010096526.1\|1374668_1375172_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_042582987.1\|1375240_1376731_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_045566761.1\|1376746_1377274_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_045566762.1\|1377317_1377959_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045566763.1\|1378333_1378945_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_042582984.1\|1379047_1380394_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_042582983.1\|1380390_1381170_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_045566764.1\|1381227_1381605_-	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_045567868.1\|1381621_1382014_-	hypothetical protein	NA	NA	NA	NA
WP_071733161.1\|1382399_1382813_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_045566765.1\|1382942_1383449_-	DUF4265 domain-containing protein	A0A2H4JD65	uncultured_Caudovirales_phage	6.4e-38	47.6
WP_059705640.1\|1383456_1384047_-	hypothetical protein	NA	NA	NA	NA
WP_045566767.1\|1384093_1384417_-	hypothetical protein	NA	NA	NA	NA
WP_045566768.1\|1384584_1386414_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.8e-13	44.1
WP_045566769.1\|1387244_1387439_-	hypothetical protein	NA	NA	NA	NA
WP_157376861.1\|1387435_1387612_-	hypothetical protein	NA	NA	NA	NA
WP_045566770.1\|1387791_1388133_-	hypothetical protein	NA	NA	NA	NA
WP_045567869.1\|1388311_1388800_-	DUF4265 domain-containing protein	NA	NA	NA	NA
WP_042582972.1\|1388947_1389211_-	hypothetical protein	NA	NA	NA	NA
WP_143135278.1\|1389463_1389793_-	hypothetical protein	NA	NA	NA	NA
WP_071733162.1\|1390254_1390728_-	DUF4265 domain-containing protein	NA	NA	NA	NA
WP_045566771.1\|1396301_1399475_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.9e-56	27.8
WP_045566772.1\|1399796_1400597_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_045566773.1\|1400683_1400887_-	hypothetical protein	NA	NA	NA	NA
WP_029226620.1\|1401279_1401531_-	hypothetical protein	NA	NA	NA	NA
WP_045566774.1\|1401733_1402285_-	hypothetical protein	NA	NA	NA	NA
WP_033355802.1\|1402358_1402910_-	hypothetical protein	NA	NA	NA	NA
WP_045566775.1\|1402896_1404837_-	TIGR02594 family protein	A0A1U9ZAE8	Proteus_phage	3.7e-09	35.2
WP_052686560.1\|1404861_1405341_-	hypothetical protein	NA	NA	NA	NA
WP_045566777.1\|1405413_1408311_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	6.5e-50	23.3
WP_045566778.1\|1409217_1409433_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_045566779.1\|1409774_1410599_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_042582963.1\|1410714_1411578_+	beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	A0A0P0YM34	Yellowstone_lake_phycodnavirus	6.5e-22	30.3
WP_080340773.1\|1411721_1412951_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_088507991.1\|1412956_1414081_+	heptosyltransferase	NA	NA	NA	NA
WP_155016937.1\|1414276_1414486_-	dioxygenase	NA	NA	NA	NA
1414853:1414901	attL	NA	NA	NA	NA
WP_045566781.1\|1415304_1416171_-	hypothetical protein	NA	NA	NA	NA
WP_157652714.1\|1416170_1416314_-	hypothetical protein	NA	NA	NA	NA
WP_157652715.1\|1416889_1417339_+	hypothetical protein	NA	NA	NA	NA
WP_045565817.1\|1417483_1418686_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_045567872.1\|1418853_1419891_-\|integrase	tyrosine-type recombinase/integrase	W6MYA3	Pseudomonas_phage	2.9e-45	37.1
1419986:1420034	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1588082 : 1673371

Burkholderia_phage(60.61%)

transposase,holin,integrase,tail,plate

attL 1629510:1629528|attR 1681605:1681623

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010093000.1\|1588082_1588436_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_045566844.1\|1588583_1590002_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	2.6e-44	30.1
WP_045567881.1\|1590435_1591446_+	hypothetical protein	NA	NA	NA	NA
WP_045566845.1\|1591445_1592072_+	hypothetical protein	NA	NA	NA	NA
WP_010093004.1\|1592111_1592846_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_042586791.1\|1592868_1593684_-	flagellar biosynthesis protein FlhG	NA	NA	NA	NA
WP_045566846.1\|1593676_1595440_-	flagellar biosynthesis protein FlhF	NA	NA	NA	NA
WP_042586789.1\|1595436_1597539_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_045566847.1\|1597535_1598735_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_045566849.1\|1599360_1600617_-	DUF3443 domain-containing protein	NA	NA	NA	NA
WP_045566850.1\|1600631_1601135_-	DUF2844 domain-containing protein	NA	NA	NA	NA
WP_010093013.1\|1601362_1602097_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_029226639.1\|1602098_1602494_-	chemotaxis response regulator CheY	Q56AR1	Bacillus_thuringiensis_phage	2.1e-07	31.9
WP_010093015.1\|1602560_1603637_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_042586783.1\|1603654_1604446_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
WP_045566851.1\|1604442_1605408_-	chemotaxis protein CheR	NA	NA	NA	NA
WP_045566852.1\|1605411_1607316_-	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	9.6e-10	63.8
WP_010093021.1\|1607352_1607868_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_045566853.1\|1607915_1610147_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_010093024.1\|1610180_1610558_-	response regulator	NA	NA	NA	NA
WP_042586779.1\|1610574_1611597_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_010093026.1\|1611610_1612471_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_042586778.1\|1612647_1613202_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_010093028.1\|1613294_1613615_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_042586777.1\|1614275_1615340_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_042586776.1\|1615526_1615823_-	H-NS histone family protein	NA	NA	NA	NA
WP_045566854.1\|1616118_1616862_+	aquaporin Z	NA	NA	NA	NA
WP_042586774.1\|1617030_1617855_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_045566855.1\|1618000_1618879_-	ATPase	NA	NA	NA	NA
WP_042586772.1\|1619023_1619626_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_006401410.1\|1619712_1619925_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_045566856.1\|1620489_1621308_+	flagellin	NA	NA	NA	NA
WP_042586770.1\|1621499_1622924_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_042586769.1\|1622957_1623254_+	flagellar protein FliT	NA	NA	NA	NA
WP_045566857.1\|1623421_1625704_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045566858.1\|1625700_1628190_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045566859.1\|1628186_1630685_-	tetratricopeptide repeat protein	NA	NA	NA	NA
1629510:1629528	attL	NA	NA	NA	NA
WP_045566860.1\|1630699_1631905_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_080340738.1\|1631901_1632882_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	5.2e-84	46.2
WP_045566861.1\|1632839_1634627_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_042586764.1\|1635030_1635816_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_042586763.1\|1635816_1637202_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_045566862.1\|1637198_1637921_+	WbqC family protein	NA	NA	NA	NA
WP_045566863.1\|1638067_1639225_+	dTDP-4-amino-4,6-dideoxygalactose transaminase	A0A0F7LAY0	uncultured_marine_virus	1.8e-19	34.9
WP_045567883.1\|1639227_1642632_+	glycosyltransferase	NA	NA	NA	NA
WP_045567884.1\|1642650_1642908_-	hypothetical protein	NA	NA	NA	NA
WP_045567885.1\|1643043_1644618_-	TIGR04222 domain-containing membrane protein	NA	NA	NA	NA
WP_042586759.1\|1645214_1645421_+\|tail	tail protein X	E5E3W5	Burkholderia_phage	1.1e-20	72.1
WP_010095861.1\|1645436_1645781_+	membrane protein	A4JWU2	Burkholderia_virus	6.7e-39	79.6
WP_045566864.1\|1645782_1646049_+\|holin	phage holin family protein	E5E3W3	Burkholderia_phage	1.6e-24	66.3
WP_045566865.1\|1646052_1646883_+	N-acetylmuramidase family protein	A4JWZ0	Burkholderia_virus	1.1e-95	68.0
WP_059813410.1\|1646879_1647320_+	protein lysB	K4NXJ2	Burkholderia_phage	6.0e-16	45.2
WP_045566867.1\|1647436_1647892_+\|tail	phage tail protein	E5E3V9	Burkholderia_phage	8.1e-32	56.5
WP_045566868.1\|1647888_1648800_+\|plate	baseplate J/gp47 family protein	E5FFH3	Burkholderia_phage	4.1e-75	50.2
WP_045566869.1\|1648792_1649359_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	7.7e-40	58.0
WP_052686531.1\|1649355_1650306_+	hypothetical protein	A4JWL8	Burkholderia_virus	5.1e-36	35.0
WP_042586752.1\|1651534_1652218_+\|plate	phage baseplate assembly protein V	E5E3V6	Burkholderia_phage	1.2e-76	67.3
WP_042586751.1\|1652214_1652577_+	GPW/gp25 family protein	K4PAX6	Burkholderia_phage	4.2e-39	66.7
WP_045566870.1\|1652573_1653488_+\|plate	baseplate J/gp47 family protein	E5FFH3	Burkholderia_phage	3.1e-123	74.6
WP_045566871.1\|1653480_1654023_+\|tail	phage tail protein I	E5FFH2	Burkholderia_phage	8.1e-71	70.9
WP_045566873.1\|1655430_1655892_+	hypothetical protein	U3TK13	Ralstonia_phage	4.5e-06	29.9
WP_045566874.1\|1655931_1657104_+\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	1.7e-187	82.8
WP_010095894.1\|1657138_1657642_+\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	4.8e-70	74.3
WP_045566875.1\|1657711_1658095_+\|tail	phage tail assembly protein	A4JWS5	Burkholderia_virus	6.0e-28	64.8
WP_010095898.1\|1658103_1658217_+\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	1.8e-09	81.1
WP_045566876.1\|1658232_1660785_+	hypothetical protein	A4JWS3	Burkholderia_virus	1.9e-154	47.5
WP_045566877.1\|1660814_1661270_+\|tail	phage tail protein	K4NXK5	Burkholderia_phage	3.1e-39	62.8
WP_045566878.1\|1661266_1662346_+	phage late control D family protein	K4PAY4	Burkholderia_phage	3.9e-133	72.4
WP_042586742.1\|1662477_1662774_-	hypothetical protein	E5E3U3	Burkholderia_phage	4.2e-13	51.6
WP_124471127.1\|1663143_1663599_-	helix-turn-helix transcriptional regulator	E5E3U2	Burkholderia_phage	2.1e-43	62.9
WP_010095910.1\|1663725_1663941_+	hypothetical protein	E5E3U1	Burkholderia_phage	2.0e-20	81.4
WP_010095912.1\|1664065_1664314_+	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	5.9e-37	91.5
WP_045566879.1\|1664517_1664781_+	hypothetical protein	E5E3N6	Burkholderia_phage	4.2e-17	63.9
WP_045566880.1\|1664784_1667577_+	toprim domain-containing protein	E5E3N5	Burkholderia_phage	0.0e+00	92.4
WP_071764486.1\|1667573_1667933_+	hypothetical protein	NA	NA	NA	NA
WP_080340739.1\|1667942_1668392_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_045566881.1\|1668259_1669336_+\|integrase	site-specific integrase	A0A1S5NNJ1	Burkholderia_phage	3.0e-170	84.3
WP_042586738.1\|1669715_1670597_+	cytochrome c5 family protein	NA	NA	NA	NA
WP_045565817.1\|1670852_1672055_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_045567889.1\|1672345_1673371_-\|transposase	IS110 family transposase	NA	NA	NA	NA
1681605:1681623	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3017448 : 3124885

111

uncultured_Caudovirales_phage(21.74%)

transposase,tRNA,protease,capsid,head,terminase,integrase,tail,portal,plate

attL 3015527:3015545|attR 3080465:3080483

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3015527:3015545	attL	NA	NA	NA	NA
WP_045567501.1\|3017448_3018975_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	4.7e-84	35.2
WP_143135230.1\|3019058_3020163_-	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	3.7e-06	35.5
WP_045567503.1\|3020296_3021994_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	7.9e-56	29.9
WP_045567504.1\|3022003_3023083_-	hypothetical protein	NA	NA	NA	NA
WP_010091965.1\|3023219_3024473_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_042584366.1\|3024531_3025227_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.0e-33	41.2
WP_042584365.1\|3025304_3026093_+	TatD family hydrolase	NA	NA	NA	NA
WP_045567505.1\|3026150_3028625_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_045567506.1\|3028709_3029540_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_045567507.1\|3029679_3031341_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.3e-151	52.2
WP_010091972.1\|3031337_3032192_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	4.0e-48	40.9
WP_006478406.1\|3032296_3033580_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	3.8e-151	62.4
WP_042584362.1\|3033661_3034096_+	cell division protein FtsB	NA	NA	NA	NA
WP_045567977.1\|3034188_3034536_-	hypothetical protein	NA	NA	NA	NA
WP_042584361.1\|3034640_3035591_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_045567508.1\|3035616_3036141_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_088501203.1\|3036336_3037191_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_042584359.1\|3037320_3038211_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_042584358.1\|3038306_3039137_+	PHP domain-containing protein	NA	NA	NA	NA
WP_045567509.1\|3039210_3039843_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_045567510.1\|3039897_3040560_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_010091982.1\|3040568_3041771_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_045567511.1\|3041767_3042379_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_045567512.1\|3042425_3043331_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_045567513.1\|3043441_3044587_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_045567514.1\|3044591_3045368_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_162296965.1\|3045461_3045644_+	hypothetical protein	NA	NA	NA	NA
WP_045567515.1\|3045966_3047190_-	cupin domain-containing protein	NA	NA	NA	NA
WP_042584350.1\|3047222_3047765_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_045567516.1\|3047744_3049022_-	membrane protein	NA	NA	NA	NA
WP_059902055.1\|3049002_3051615_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.3e-25	24.3
WP_045567518.1\|3051849_3053151_+\|integrase	integrase family protein	C7BGE7	Burkholderia_phage	2.2e-151	59.1
WP_071733872.1\|3053101_3053344_-	AlpA family phage regulatory protein	C7BGF0	Burkholderia_phage	9.3e-19	61.6
WP_157642547.1\|3053352_3053718_-	hypothetical protein	B5TA88	Burkholderia_phage	8.8e-05	65.0
WP_045567520.1\|3053710_3054070_-	hypothetical protein	NA	NA	NA	NA
WP_045567979.1\|3054171_3055524_-	hypothetical protein	NA	NA	NA	NA
WP_045567521.1\|3055523_3056123_-	hypothetical protein	NA	NA	NA	NA
WP_045567522.1\|3056119_3056476_-	hypothetical protein	NA	NA	NA	NA
WP_045567523.1\|3056527_3056746_-	hypothetical protein	NA	NA	NA	NA
WP_157660973.1\|3056873_3057332_-	hypothetical protein	NA	NA	NA	NA
WP_080340754.1\|3057279_3057831_-	helix-turn-helix transcriptional regulator	A0A193GYL7	Enterobacter_phage	9.5e-11	37.4
WP_045567527.1\|3058203_3058761_+	hypothetical protein	C7BGG0	Burkholderia_phage	7.1e-30	47.1
WP_045567528.1\|3058762_3059146_+	hypothetical protein	NA	NA	NA	NA
WP_045567529.1\|3059304_3061803_+	virulence protein E	A0A2D1GN57	Marinobacter_phage	7.2e-98	41.2
WP_045567980.1\|3062018_3062792_+	zinc finger-like domain-containing protein	NA	NA	NA	NA
WP_045567530.1\|3063166_3063541_+	hypothetical protein	NA	NA	NA	NA
WP_045567531.1\|3063622_3063814_+	hypothetical protein	NA	NA	NA	NA
WP_045567532.1\|3064310_3066425_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	1.9e-179	52.7
WP_045567533.1\|3066438_3066645_+	hypothetical protein	NA	NA	NA	NA
WP_045567534.1\|3066641_3068135_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	3.8e-139	52.5
WP_045567981.1\|3068124_3069222_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.0e-48	35.5
WP_045567535.1\|3069234_3069579_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	2.4e-20	52.9
WP_045567536.1\|3069645_3070641_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	4.6e-112	60.3
WP_045567537.1\|3070642_3070933_+	hypothetical protein	NA	NA	NA	NA
WP_045567538.1\|3070938_3071466_+\|tail	phage tail protein	D4HTU8	Vibrio_phage	7.0e-19	29.8
WP_045567539.1\|3071458_3071986_+	hypothetical protein	Q9JML9	Wolbachia_phage	2.3e-22	37.9
WP_045567540.1\|3071982_3072663_+\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	3.4e-18	29.8
WP_045567541.1\|3072727_3072934_+	hypothetical protein	NA	NA	NA	NA
WP_045567542.1\|3072930_3073275_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.5e-25	51.9
WP_045567543.1\|3073271_3074165_+\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	3.2e-48	38.1
WP_045567544.1\|3074154_3074721_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	2.6e-35	48.9
WP_052686550.1\|3074717_3075803_+	hypothetical protein	A4JWL8	Burkholderia_virus	6.4e-67	43.9
WP_045567545.1\|3075816_3076272_+\|tail	phage tail protein	NA	NA	NA	NA
WP_045567546.1\|3076352_3077522_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.5e-162	74.0
WP_045567547.1\|3077532_3078036_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	2.3e-43	49.4
WP_045567983.1\|3078120_3078450_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_045567548.1\|3078516_3080949_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	2.1e-54	33.0
3080465:3080483	attR	NA	NA	NA	NA
WP_045567549.1\|3080961_3081843_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.7e-33	38.7
WP_045567550.1\|3081817_3082024_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.6e-16	61.2
WP_045567551.1\|3082033_3083086_+	phage late control D protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.7e-80	47.1
WP_045567552.1\|3083159_3083609_+	hypothetical protein	NA	NA	NA	NA
WP_045567553.1\|3083605_3084172_+	N-acetylmuramidase	A0A0E3JI96	Rhodoferax_phage	6.7e-52	55.3
WP_052686551.1\|3084168_3084801_+	hypothetical protein	NA	NA	NA	NA
WP_045567554.1\|3084981_3085218_-	hypothetical protein	NA	NA	NA	NA
WP_045567555.1\|3085612_3086401_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	1.5e-145	91.2
WP_045567556.1\|3086440_3087151_-	immunity 52 family protein	A4PE26	Ralstonia_virus	1.3e-36	39.3
WP_071733818.1\|3087163_3087772_-	hypothetical protein	NA	NA	NA	NA
WP_045567559.1\|3088119_3088623_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	3.4e-23	46.2
WP_080340755.1\|3088626_3089037_-	PAAR domain-containing protein	Q8W6S2	Burkholderia_virus	4.0e-14	48.8
WP_045567560.1\|3089127_3089778_-	hypothetical protein	Q8W6R9	Burkholderia_virus	9.4e-42	44.7
WP_162487879.1\|3090094_3090826_+	hypothetical protein	NA	NA	NA	NA
WP_045567562.1\|3091359_3091983_-	hypothetical protein	NA	NA	NA	NA
WP_157380455.1\|3092665_3093277_+	hypothetical protein	NA	NA	NA	NA
WP_045567986.1\|3094513_3095248_-	immunity 52 family protein	A4PE26	Ralstonia_virus	5.3e-33	40.1
WP_060284440.1\|3095253_3095622_-	hypothetical protein	NA	NA	NA	NA
WP_071737961.1\|3095716_3096196_-	hypothetical protein	NA	NA	NA	NA
WP_045567564.1\|3096188_3096692_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	4.6e-20	41.7
WP_045567565.1\|3096696_3097107_-	PAAR domain-containing protein	Q8W6S2	Burkholderia_virus	6.8e-14	48.8
WP_080340756.1\|3097360_3098194_-	nucleotide-binding protein	NA	NA	NA	NA
WP_157641787.1\|3098464_3099019_-	hypothetical protein	NA	NA	NA	NA
WP_045567567.1\|3099468_3099807_-	hypothetical protein	NA	NA	NA	NA
WP_045567568.1\|3100029_3100956_+	DUF2806 domain-containing protein	A0A291AUV8	Sinorhizobium_phage	1.4e-25	32.3
WP_157641788.1\|3101237_3101597_-	hypothetical protein	NA	NA	NA	NA
WP_157641789.1\|3101651_3102038_-	hypothetical protein	NA	NA	NA	NA
WP_157641790.1\|3103078_3103726_+	hypothetical protein	NA	NA	NA	NA
WP_059920973.1\|3103965_3105234_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.3e-39	43.3
WP_045567571.1\|3106545_3107526_+	hypothetical protein	NA	NA	NA	NA
WP_157641734.1\|3108371_3109568_+	hypothetical protein	NA	NA	NA	NA
WP_045567572.1\|3111606_3113010_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_045567573.1\|3113507_3114143_+	LysE family translocator	NA	NA	NA	NA
WP_042584345.1\|3114222_3115026_-	inositol monophosphatase	NA	NA	NA	NA
WP_042584344.1\|3115304_3116123_+	RNA methyltransferase	NA	NA	NA	NA
WP_010092003.1\|3116297_3117071_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_042584343.1\|3117117_3117918_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_045567574.1\|3117941_3118433_-	peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	2.6e-07	29.6
WP_042584342.1\|3118523_3119099_-	peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	2.4e-12	39.3
WP_042584341.1\|3119156_3119879_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045567575.1\|3120113_3121511_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	2.4e-42	34.6
WP_045567576.1\|3121554_3122355_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_006478433.1\|3122457_3123429_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_045567577.1\|3123475_3124885_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009486

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009488

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection