CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009535	Burkholderia pseudomallei 7894 chromosome I, complete sequence	0 crisprs	csa3,DEDDh,cas3,WYL,RT	0	0	7	0
NZ_CP009536	Burkholderia pseudomallei 7894 chromosome II, complete sequence	3 crisprs	csa3,cas3,DinG	0	0	4	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

474066 : 482256

Burkholderia_virus(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004527232.1\|474066_475176_+	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	3.1e-37	31.6
WP_004193371.1\|475370_475994_+	phospholipase D family protein	NA	NA	NA	NA
WP_004527233.1\|476120_476303_-	hypothetical protein	NA	NA	NA	NA
WP_004550288.1\|477238_477700_+	avidin	NA	NA	NA	NA
WP_004527234.1\|477775_478009_+	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_004531416.1\|478044_478272_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_004557051.1\|478525_478921_+	hypothetical protein	NA	NA	NA	NA
WP_028200808.1\|479201_479624_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	9.2e-14	48.3
WP_028200809.1\|479620_480127_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.0e-19	40.9
WP_071810609.1\|480468_481071_+	hypothetical protein	NA	NA	NA	NA
WP_009920998.1\|481077_481803_+	hypothetical protein	A4PE26	Ralstonia_virus	5.8e-32	44.0
WP_076833215.1\|481823_482009_-	hypothetical protein	Q8W6S4	Burkholderia_virus	4.4e-21	85.2
WP_004196630.1\|481992_482256_-	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5

DBSCAN-SWA_2

996225 : 1005091

Yaba_monkey_tumor_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009966840.1\|996225_997068_+	alpha/beta hydrolase	Q6TUZ7	Yaba_monkey_tumor_virus	9.8e-15	29.5
WP_004188957.1\|997410_998334_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	36.5
WP_009966841.1\|998512_999808_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004532363.1\|1000034_1000937_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_004189725.1\|1001295_1001613_-	competence protein ComE	NA	NA	NA	NA
WP_004537712.1\|1001684_1002677_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009921652.1\|1002735_1003659_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004522358.1\|1003690_1005091_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-79	38.5

DBSCAN-SWA_3

1341712 : 1350969

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_028201128.1\|1341712_1343260_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2
WP_004194373.1\|1343296_1343824_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004532195.1\|1343820_1344504_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194137.1\|1344568_1345384_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_028201129.1\|1345567_1347586_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	7.0e-51	34.2
WP_004522147.1\|1347619_1348750_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.6
WP_004533561.1\|1349016_1350969_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_4

1637434 : 1695753

Burkholderia_phage(27.27%)

transposase,integrase,tRNA,plate,tail

attL 1640287:1640303|attR 1697126:1697142

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004521984.1\|1637434_1638733_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004527811.1\|1638799_1639882_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_004534980.1\|1639925_1640783_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
1640287:1640303	attL	NA	NA	NA	NA
WP_004186955.1\|1640862_1641171_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_004521981.1\|1641185_1641782_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_004521980.1\|1642065_1642854_+	dioxygenase	NA	NA	NA	NA
WP_004527813.1\|1643281_1644883_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|1645316_1645520_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_004555450.1\|1645706_1646969_-	Hsp70 family protein	NA	NA	NA	NA
WP_004198059.1\|1647664_1648270_-	nitroreductase family protein	NA	NA	NA	NA
WP_004198060.1\|1648231_1648807_+	hypothetical protein	NA	NA	NA	NA
WP_004198061.1\|1648766_1650050_-	MFS transporter	NA	NA	NA	NA
WP_004534987.1\|1650208_1650853_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004527819.1\|1651190_1651814_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_004521971.1\|1651898_1652795_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004535007.1\|1652922_1654059_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004545617.1\|1654035_1654341_+	hypothetical protein	NA	NA	NA	NA
WP_004545603.1\|1654415_1655534_-	acyltransferase	NA	NA	NA	NA
WP_004545599.1\|1655532_1656012_+	hypothetical protein	NA	NA	NA	NA
WP_004199982.1\|1655971_1656475_-	lipoprotein	NA	NA	NA	NA
WP_004204896.1\|1657078_1659244_+	peptidase	A0A0P0IY26	Acinetobacter_phage	1.9e-46	27.1
WP_009945507.1\|1659825_1660224_+	hypothetical protein	NA	NA	NA	NA
WP_004185238.1\|1660299_1660536_+	hypothetical protein	NA	NA	NA	NA
WP_004204906.1\|1660638_1660869_+	hypothetical protein	NA	NA	NA	NA
WP_009967185.1\|1661102_1661459_-	hypothetical protein	NA	NA	NA	NA
WP_004199991.1\|1661484_1662753_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004521963.1\|1662767_1665029_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_004199995.1\|1665025_1666474_+	TolC family protein	NA	NA	NA	NA
WP_004555447.1\|1666683_1667670_-	hypothetical protein	NA	NA	NA	NA
WP_004199998.1\|1667795_1668647_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_009967193.1\|1668664_1668925_+	hypothetical protein	NA	NA	NA	NA
WP_009967195.1\|1668932_1672826_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004200003.1\|1672822_1673812_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004535030.1\|1673816_1674749_+	OmpA family protein	NA	NA	NA	NA
WP_009967198.1\|1674947_1676069_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_009967199.1\|1676158_1678828_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	2.9e-89	32.0
WP_004200010.1\|1678861_1679962_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004527836.1\|1679925_1681764_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004204912.1\|1681843_1682326_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004527837.1\|1682383_1682887_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004521953.1\|1682959_1684450_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009967200.1\|1684466_1684985_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_045597230.1\|1685021_1685687_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521950.1\|1686061_1686676_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009967204.1\|1686784_1688131_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521948.1\|1688127_1688913_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004527840.1\|1689014_1689380_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	2.5e-52	88.4
WP_111952238.1\|1689483_1690074_-	hypothetical protein	NA	NA	NA	NA
WP_076852297.1\|1690467_1691070_-	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	4.3e-81	89.1
WP_004527843.1\|1690967_1691381_-\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	8.0e-71	100.0
WP_123903074.1\|1691468_1691996_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	S5WIU1	Leptospira_phage	5.1e-30	49.2
WP_100209513.1\|1691920_1692436_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.0e-27	52.5
WP_004555440.1\|1692394_1694692_-	S8 family peptidase	NA	NA	NA	NA
WP_004555439.1\|1694748_1695753_-	AAA family ATPase	Q677Q6	Lymphocystis_disease_virus	2.6e-14	31.7
1697126:1697142	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1956608 : 1987933

Burkholderia_phage(42.42%)

terminase,holin,capsid,portal,integrase,plate,head,tail

attL 1964173:1964219|attR 1987997:1988043

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004195754.1\|1956608_1957253_-	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	5.7e-07	30.4
WP_004525721.1\|1958153_1958402_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_004530408.1\|1958558_1959638_-	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_009932249.1\|1959637_1960090_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	2.3e-31	58.8
WP_009932250.1\|1960347_1960890_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.1e-47	55.8
WP_004530410.1\|1961143_1962061_-	DUF4935 domain-containing protein	A4PE40	Ralstonia_virus	4.0e-46	40.6
WP_009922658.1\|1962060_1962378_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	6.2e-15	57.0
WP_009932253.1\|1962385_1962706_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	1.0e-12	58.6
WP_038710463.1\|1962757_1963345_-\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	1.2e-43	50.0
WP_038722429.1\|1963819_1964248_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
1964173:1964219	attL	NA	NA	NA	NA
WP_076852949.1\|1964787_1965234_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_143293234.1\|1965309_1965744_+	hypothetical protein	NA	NA	NA	NA
WP_143293235.1\|1965756_1967076_+	hypothetical protein	NA	NA	NA	NA
WP_076852952.1\|1967076_1967814_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	9.4e-14	30.4
WP_009969693.1\|1968423_1968720_+	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	2.8e-49	96.9
WP_009969692.1\|1968722_1969079_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.1e-43	98.9
WP_009969691.1\|1969122_1970178_-\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	3.1e-199	96.6
WP_009969690.1\|1970174_1971944_-\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	0.0e+00	95.1
WP_009969689.1\|1972087_1972897_+\|capsid	GPO family capsid scaffolding protein	K4PAW2	Burkholderia_phage	3.7e-128	87.7
WP_009969688.1\|1972930_1973944_+\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	1.0e-175	92.6
WP_009969687.1\|1973940_1974630_+\|terminase	terminase endonuclease subunit	K4NX86	Burkholderia_phage	3.2e-112	96.1
WP_045597244.1\|1974729_1975209_+\|head	head completion/stabilization protein	A4JWU5	Burkholderia_virus	5.1e-77	95.6
WP_009969798.1\|1975208_1975460_+	hypothetical protein	K4NXI9	Burkholderia_phage	9.9e-32	83.1
WP_009969797.1\|1975456_1975663_+\|tail	tail protein	K4PAW7	Burkholderia_phage	2.2e-29	94.1
WP_009969796.1\|1975677_1976022_+	membrane protein	K4NZQ3	Burkholderia_phage	8.5e-50	98.2
WP_004524440.1\|1976023_1976296_+\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_009969795.1\|1976292_1977105_+	DUF3380 domain-containing protein	A4JWU0	Burkholderia_virus	6.5e-141	92.6
WP_009969794.1\|1977101_1977542_+	hypothetical protein	K4NXJ2	Burkholderia_phage	2.9e-63	89.0
WP_009969793.1\|1977646_1978063_+\|tail	phage tail protein	A4JWT7	Burkholderia_virus	3.0e-65	92.0
WP_038722476.1\|1978059_1978527_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.7e-72	92.9
WP_009969791.1\|1978658_1979120_-	hypothetical protein	NA	NA	NA	NA
WP_038722474.1\|1979656_1980448_-	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	2.9e-138	93.0
WP_009969789.1\|1980621_1981302_+\|plate	phage baseplate assembly protein V	K4NXJ5	Burkholderia_phage	9.1e-112	90.7
WP_009969788.1\|1981298_1981661_+\|plate	baseplate assembly protein	A4JWY3	Burkholderia_virus	6.8e-58	94.1
WP_009969786.1\|1981657_1982563_+\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	2.0e-154	94.7
WP_009969785.1\|1982555_1983110_+\|tail	phage tail protein I	A4JWT0	Burkholderia_virus	2.2e-95	95.7
WP_009969784.1\|1983120_1985484_+	hypothetical protein	Q45YG3	Burkholderia_virus	0.0e+00	86.7
WP_076852959.1\|1986605_1986941_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_045597247.1\|1986808_1987933_+\|integrase	site-specific integrase	A0A1S5NNJ1	Burkholderia_phage	2.6e-164	77.9
1987997:1988043	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3027314 : 3038263

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197486.1\|3027314_3029429_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7
WP_004530837.1\|3029726_3030236_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_071810810.1\|3030427_3030646_-	hypothetical protein	NA	NA	NA	NA
WP_004189780.1\|3030908_3031487_-	pseudouridine synthase	NA	NA	NA	NA
WP_004189552.1\|3031754_3033014_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_009929279.1\|3032986_3033169_-	hypothetical protein	NA	NA	NA	NA
WP_045597308.1\|3033181_3034786_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|3034915_3035119_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004194131.1\|3035651_3035966_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196461.1\|3035962_3038263_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1

DBSCAN-SWA_7

3199843 : 3274250

uncultured_Caudovirales_phage(31.25%)

transposase,terminase,portal,integrase,protease,capsid,plate,head,tail

attL 3202598:3202616|attR 3266360:3266378

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522511.1\|3199843_3200383_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_009969854.1\|3200480_3201617_-	murein-DD-endopeptidase	NA	NA	NA	NA
WP_004200110.1\|3201857_3202082_-	hypothetical protein	NA	NA	NA	NA
WP_004526357.1\|3202538_3203015_+	hypothetical protein	NA	NA	NA	NA
3202598:3202616	attL	NA	NA	NA	NA
WP_045597317.1\|3204685_3214009_+	contact-dependent inhibition toxin BcpA	A0A0R6PJK4	Moraxella_phage	1.2e-33	33.9
WP_123850157.1\|3214005_3214296_+	hypothetical protein	NA	NA	NA	NA
WP_004543927.1\|3214397_3214577_+	hypothetical protein	NA	NA	NA	NA
WP_020850843.1\|3214595_3214820_+	CDI system lipoprotein BcpO	NA	NA	NA	NA
WP_004556790.1\|3214844_3216602_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_004543939.1\|3216634_3216832_+	hypothetical protein	NA	NA	NA	NA
WP_004556791.1\|3217333_3217591_+	hypothetical protein	NA	NA	NA	NA
WP_004522504.1\|3219913_3220114_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_004556796.1\|3220266_3220407_+	hypothetical protein	NA	NA	NA	NA
WP_004526371.1\|3220634_3220895_-	hypothetical protein	NA	NA	NA	NA
WP_076852973.1\|3221793_3222819_+	hypothetical protein	NA	NA	NA	NA
WP_009969682.1\|3223291_3223867_-	recombinase family protein	A0A219Y912	Aeromonas_phage	8.7e-23	39.6
WP_009969683.1\|3224593_3225595_+	hypothetical protein	NA	NA	NA	NA
WP_024431614.1\|3225563_3226505_+	hypothetical protein	NA	NA	NA	NA
WP_009951642.1\|3226912_3227434_+	DNA-binding protein	NA	NA	NA	NA
WP_011850884.1\|3227656_3227827_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004535931.1\|3227826_3228306_+	hypothetical protein	NA	NA	NA	NA
WP_004524589.1\|3228842_3229100_+	hypothetical protein	NA	NA	NA	NA
WP_004524588.1\|3229096_3229438_+	hypothetical protein	NA	NA	NA	NA
WP_135351040.1\|3233176_3234376_-	hypothetical protein	NA	NA	NA	NA
WP_009964473.1\|3234426_3235641_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	3.3e-88	44.0
WP_009964475.1\|3236098_3237199_+\|integrase	site-specific integrase	A0A2D1GMX8	Marinobacter_phage	1.5e-44	31.0
WP_009964477.1\|3237232_3237463_-	hypothetical protein	NA	NA	NA	NA
WP_038720986.1\|3237459_3238239_-	hypothetical protein	Q6J1P0	Burkholderia_virus	6.5e-21	57.3
WP_025405240.1\|3238247_3238577_-	hypothetical protein	NA	NA	NA	NA
WP_009964483.1\|3238690_3240007_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_009964485.1\|3240006_3240456_-	hypothetical protein	NA	NA	NA	NA
WP_004534172.1\|3240452_3241058_-	hypothetical protein	NA	NA	NA	NA
WP_004534202.1\|3241054_3241390_-	hypothetical protein	NA	NA	NA	NA
WP_004550209.1\|3241441_3241660_-	hypothetical protein	NA	NA	NA	NA
WP_123850154.1\|3241788_3242244_-	hypothetical protein	NA	NA	NA	NA
WP_009909040.1\|3242191_3242677_-	helix-turn-helix transcriptional regulator	A0A193GYL7	Enterobacter_phage	4.4e-12	41.2
WP_076853252.1\|3242825_3243053_+	hypothetical protein	NA	NA	NA	NA
WP_009927752.1\|3243141_3243669_+	hypothetical protein	C7BGG0	Burkholderia_phage	9.7e-29	46.5
WP_025405238.1\|3243682_3244015_+	hypothetical protein	NA	NA	NA	NA
WP_009964493.1\|3244022_3244478_-	hypothetical protein	NA	NA	NA	NA
WP_099975963.1\|3244479_3244938_+	hypothetical protein	NA	NA	NA	NA
WP_009964497.1\|3245311_3245782_+	hypothetical protein	NA	NA	NA	NA
WP_009964499.1\|3245903_3248396_+	virulence protein E	A0A2D1GN57	Marinobacter_phage	8.5e-99	41.8
WP_025405237.1\|3248613_3249387_+	hypothetical protein	NA	NA	NA	NA
WP_009964504.1\|3249888_3250458_+	hypothetical protein	NA	NA	NA	NA
WP_009964506.1\|3250420_3252409_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	6.6e-179	53.3
WP_009964508.1\|3252419_3252626_+	hypothetical protein	NA	NA	NA	NA
WP_038720977.1\|3252622_3254116_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	4.1e-133	50.8
WP_009964514.1\|3254112_3255189_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	2.4e-50	38.1
WP_038720978.1\|3255215_3255560_+\|head	head decoration protein	NA	NA	NA	NA
WP_009964517.1\|3255625_3256621_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	2.8e-109	59.1
WP_009964519.1\|3256624_3256915_+	hypothetical protein	NA	NA	NA	NA
WP_009964520.1\|3256916_3257447_+\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	4.1e-11	29.0
WP_004533675.1\|3257436_3257970_+	hypothetical protein	Q9JML9	Wolbachia_phage	6.2e-23	39.5
WP_038720980.1\|3257972_3258653_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	9.0e-19	35.1
WP_009964525.1\|3258717_3258924_+	hypothetical protein	NA	NA	NA	NA
WP_004547840.1\|3258920_3259265_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_009964528.1\|3259261_3260155_+\|plate	baseplate J protein	A0A1J0I2M3	Salmonella_phage	8.4e-49	40.1
WP_004539949.1\|3260147_3260723_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.0e-32	47.7
WP_004539647.1\|3260710_3262174_+	hypothetical protein	A4JWL8	Burkholderia_virus	8.0e-214	77.8
WP_009964532.1\|3262189_3262642_+\|tail	tail assembly chaperone	A4JWL9	Burkholderia_virus	4.8e-45	77.7
WP_009964534.1\|3262708_3263878_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	3.7e-161	73.5
WP_009964536.1\|3263888_3264392_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.2e-41	50.0
WP_004533642.1\|3264461_3264764_+\|tail	phage tail assembly protein	V5YST8	Pseudomonas_phage	1.5e-05	37.2
WP_009964539.1\|3264851_3267266_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.2e-62	32.9
3266360:3266378	attR	NA	NA	NA	NA
WP_009964541.1\|3267274_3268156_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	2.0e-31	38.1
WP_009964543.1\|3268130_3268337_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.4e-15	59.7
WP_009964545.1\|3268346_3269399_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	5.4e-79	44.8
WP_009964547.1\|3269474_3269669_+	hypothetical protein	NA	NA	NA	NA
WP_038720983.1\|3269661_3270159_+	lysozyme	A4JX20	Burkholderia_virus	2.0e-68	80.0
WP_009964551.1\|3270158_3270704_+	lysozyme	Q8W6S5	Burkholderia_virus	7.3e-80	92.8
WP_009964553.1\|3270846_3271635_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	3.6e-152	96.9
WP_009964555.1\|3271670_3272372_-	hypothetical protein	A4PE26	Ralstonia_virus	1.3e-33	43.7
WP_099975964.1\|3272374_3272809_-	hypothetical protein	NA	NA	NA	NA
WP_038720984.1\|3272852_3273326_-	hypothetical protein	NA	NA	NA	NA
WP_009964559.1\|3273827_3274250_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.1e-14	46.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009536

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009536_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009536_1

342920-343012

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009536_1

>merge|NZ_CP009536|1|342920-343012|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NZ_CP009536|1|1|342920-343012|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009536.1\|WP_004529184.1\|350663_351842_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP009536.1\|WP_004187193.1\|343230_343479_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP009536.1\|WP_009969306.1\|327305_328379_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP009536.1\|WP_004530237.1\|344474_344975_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP009536.1\|WP_009969313.1\|337251_337761_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009536.1\|WP_045597586.1\|340489_342484_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_CP009536.1\|WP_004552097.1\|331638_332763_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP009536.1\|WP_004524990.1\|335145_336711_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP009536.1\|WP_004188221.1\|344971_345427_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP009536.1\|WP_004524985.1\|344173_344482_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP009536.1\|WP_009969310.1\|332912_334748_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP009536.1\|WP_004187346.1\|343475_344177_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP009536.1\|WP_045597589.1\|345416_347099_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP009536.1\|WP_045597583.1\|337818_338322_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009536.1\|WP_045597581.1\|328375_331636_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP009536.1\|WP_004188840.1\|347459_349253_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NZ_CP009536.1\|WP_004524980.1\|349263_350667_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP009536.1\|WP_004188537.1\|325782_327309_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|182103
NZ_CP009536.1\|WP_004529178.1\|338381_339407_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP009536.1\|WP_004524981.1\|347070_347328_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009536.1\|WP_004529184.1\|350663_351842_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP009536.1\|WP_004187193.1\|343230_343479_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP009536.1\|WP_009969306.1\|327305_328379_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	2.70657e-39
NZ_CP009536.1\|WP_004188221.1\|344971_345427_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_CP009536.1\|WP_004524985.1\|344173_344482_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	4.12229e-10
NZ_CP009536.1\|WP_045597586.1\|340489_342484_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP009536.1\|WP_004552097.1\|331638_332763_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.904e-25
NZ_CP009536.1\|WP_004187346.1\|343475_344177_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NZ_CP009536.1\|WP_004524980.1\|349263_350667_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP009536.1\|WP_004530237.1\|344474_344975_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	4.39073e-17
NZ_CP009536.1\|WP_009969310.1\|332912_334748_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.97736e-132
NZ_CP009536.1\|WP_004524990.1\|335145_336711_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP009536.1\|WP_045597589.1\|345416_347099_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP009536.1\|WP_045597581.1\|328375_331636_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.7979e-92
NZ_CP009536.1\|WP_004188840.1\|347459_349253_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.3979e-179
NZ_CP009536.1\|WP_004188537.1\|325782_327309_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	7.30998e-99
NZ_CP009536.1\|WP_004529178.1\|338381_339407_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0

>NZ_CP009536.1|WP_045597586.1|340489_342484_-|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIVFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAAHRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSPEASREVSREVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGADANVNADANVDAEAEARHKR
>NZ_CP009536.1|WP_004529178.1|338381_339407_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP009536.1|WP_045597583.1|337818_338322_-|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGRAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NZ_CP009536.1|WP_009969313.1|337251_337761_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLTMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP009536.1|WP_004524990.1|335145_336711_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP009536.1|WP_009969310.1|332912_334748_+|response-regulator
MHVEVFAQHSSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRWLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLDAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRARGARHAQADPRAKTAAARVQR
>NZ_CP009536.1|WP_004552097.1|331638_332763_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMNAGDFTFVLDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRKFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP009536.1|WP_045597581.1|328375_331636_+|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRARGAATLEEAFIGYLVDASAQEAQGGAGGRPGAGERAAGESLAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSEVGSEVGSDVGSDVASEAGPEAGLAASAESGAERAREPAADITADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHDLYSQFWPLAASVPVILGATILLLKKQER
>NZ_CP009536.1|WP_009969306.1|327305_328379_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQVTRKQIVAAAAVVVVALGAYYGWTLLRHQGPGDGFASGNGRIEATEIDVATKLPGRIDAILVDEGDFVKAGQPLANMQIQVLRAQYDEATAQRQRALNTAAGVQSQVAQRKSDKAAAQAMVVLRESELDAAERRLARSQTLSREGASSLQELDDDRARARSAQAAVSAAAAQVAAAQAAIEATEAQLVAAHSAVTAADATVARVQADIDDSQLASPRDGRVQYRVAQPGEVLPAGGKVLNLVDLSDVYMTFFLPETVVGRVALGADARIILDAAPNYVIPATVSFVSSTAQFTPKTVETANERQKLMFRVKARIDRELLQKHLKLVKTGLPGVAWVRVDPSKPWPAQLMVKVAQ
>NZ_CP009536.1|WP_004188537.1|325782_327309_+|efflux-transporter-outer-membrane-subunit
MTMRNDARHDERHQRRRGIARRAARHAAALALCAAVSGCLSLAPDYARKPPPVPAAYPAYPGEPGAGSRTLEQLGWRAYFVDPRLQALIETALANNRDLRIAAQRVEQARAAYGIRRADQYPTIAANAAYLRFREPGGLLLPSPIIGELYSASLSEVQWEIDFWGRVRSLKAAALDTFLASDASRRAVTVSLIGQVADAYLALCAYDERLALTNETIASRRDSLRIFRRRYEEGAISKLDLTQSEILLQQAQTLGSQLQQARDVQQHALDLLVGTNAAARTPASLDDASIAPDLAPGLPSELLANRPDVVAAEYQLRAAHANIGAARAAFFPRIALTSSIGTGSTELHNLFASGTAAWNFIPNLSVPIFDAGRNIGNLKLANARRDEALAQYEKTIQTAFRDVADALAARHWLADQVRIAQETLATQAERARLAKLRYDSGAARFLEVLDAQRDLLNAQQQLVQTRRALLASRVALYAALGGRLDEPARDGAAPRPSPEPSAKQGPLS
>NZ_CP009536.1|WP_004187193.1|343230_343479_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP009536.1|WP_004187346.1|343475_344177_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP009536.1|WP_004524985.1|344173_344482_-|membrane-protein
MIEMWETARASFDGIAAAIGLALGFVAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP009536.1|WP_004530237.1|344474_344975_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREAREARDDAARGDARHAGAGAAPDDPRGAARRDPPPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NZ_CP009536.1|WP_004188221.1|344971_345427_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP009536.1|WP_045597589.1|345416_347099_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVIDVAFDGGALSALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSGTTSGTTSGTTSGTTSGTTSGTTSGTTSGTTSDPASGSAEPQGARHGR
>NZ_CP009536.1|WP_004524981.1|347070_347328_+|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NZ_CP009536.1|WP_004188840.1|347459_349253_+|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NZ_CP009536.1|WP_004524980.1|349263_350667_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP009536.1|WP_004529184.1|350663_351842_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA

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Crispr_ID: NZ_CP009536_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009536_2

785280-785365

Orphan

Consensus_repeat	Method
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009536_2

>merge|NZ_CP009536|2|785280-785365|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGC

>NZ_CP009536|2|2|785280-785365|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009536.1\|WP_009982176.1\|792770_794600_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP009536.1\|WP_004529498.1\|796695_797130_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP009536.1\|WP_045597605.1\|785951_787229_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_CP009536.1\|WP_004196898.1\|775811_776252_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP009536.1\|WP_045597604.1\|777966_778902_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP009536.1\|WP_028201535.1\|794728_795076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009536.1\|WP_004529485.1\|778917_779508_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009536.1\|WP_004523279.1\|791742_792774_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236122
NZ_CP009536.1\|WP_004188282.1\|772277_773321_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP009536.1\|WP_071811369.1\|775237_775840_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009536.1\|WP_009982169.1\|781749_784023_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP009536.1\|WP_004188244.1\|797531_798662_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP009536.1\|WP_009969572.1\|779567_781466_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP009536.1\|WP_004530663.1\|795071_795521_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP009536.1\|WP_004552281.1\|795974_796628_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP009536.1\|WP_004187469.1\|784155_784551_-\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NZ_CP009536.1\|WP_004523292.1\|773326_774559_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	unknown	unknown	gnl\|CDD\|223997
NZ_CP009536.1\|WP_009969563.1\|776553_777669_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP009536.1\|WP_024431683.1\|787444_789286_+\|ribonucleotide-reductase-like-protein	unknown	unknown	gnl\|CDD\|180772
NZ_CP009536.1\|WP_004532595.1\|789360_791172_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098

Protein	Function_ID	Function_description	E-value
NZ_CP009536.1\|WP_009982176.1\|792770_794600_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	7.26837e-108
NZ_CP009536.1\|WP_004529498.1\|796695_797130_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP009536.1\|WP_045597605.1\|785951_787229_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	1.75355e-113
NZ_CP009536.1\|WP_004196898.1\|775811_776252_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	3.1145e-25
NZ_CP009536.1\|WP_045597604.1\|777966_778902_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.9955e-62
NZ_CP009536.1\|WP_004530663.1\|795071_795521_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	3.14402e-50
NZ_CP009536.1\|WP_009969563.1\|776553_777669_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.24551e-11
NZ_CP009536.1\|WP_004523279.1\|791742_792774_+\|hypothetical-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	3.7258e-30
NZ_CP009536.1\|WP_004188282.1\|772277_773321_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP009536.1\|WP_009982169.1\|781749_784023_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	1.85643e-56
NZ_CP009536.1\|WP_009969572.1\|779567_781466_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	4.08722e-35
NZ_CP009536.1\|WP_004188244.1\|797531_798662_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	2.53339e-55
NZ_CP009536.1\|WP_004552281.1\|795974_796628_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	4.23582e-20
NZ_CP009536.1\|WP_004187469.1\|784155_784551_-\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP009536.1\|WP_004523292.1\|773326_774559_-\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	gnl\|CDD\|223997	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion].	5.32689e-143
NZ_CP009536.1\|WP_004532595.1\|789360_791172_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	3.75845e-75
NZ_CP009536.1\|WP_024431683.1\|787444_789286_+\|ribonucleotide-reductase-like-protein	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0

>NZ_CP009536.1|WP_004187469.1|784155_784551_-|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP009536.1|WP_009982169.1|781749_784023_-|FAD-dependent-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPVSITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKMKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP009536.1|WP_009969572.1|779567_781466_+|GMC-family-oxidoreductase
MLGATRSTLWGSRERPRIAAARAPGAVASRMREEARECAGPRGAGRAPHRATAAGGKTGRRTVRAPSRARAGSNNQKVNRMKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETLVAA
>NZ_CP009536.1|WP_004529485.1|778917_779508_+|hypothetical-protein
MCRARGIGRQARGNATAPSPIAAAAIGARPRSAPRGPRISDAGRLAAARSAFAIHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQAPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_CP009536.1|WP_045597604.1|777966_778902_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLTRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCDEHAPA
>NZ_CP009536.1|WP_009969563.1|776553_777669_-|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQIRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP009536.1|WP_004196898.1|775811_776252_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP009536.1|WP_071811369.1|775237_775840_+|hypothetical-protein
MNSILAPDNAPPASATRTSPLMSALARAVVTAPLPGSDRAAEASTRVSTMRAQSASAIRIRSCRRSRSSRHGLPESPACRRKSPARPRSRRAPRPLADHTRMRFSPPRLGVRTARPPPAGRSKPARGASAIRLRVQRRSSRLTMTLINVIVIARAPQTAIVTHRGIGPRAIGRLTARRRAARPSTLETRPSYETATHRNR
>NZ_CP009536.1|WP_004523292.1|773326_774559_-|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha
MSQYGPLRLHVPEPTGRPGCKTDFSYLRLSPAGKVRKPPIDVAPADTSDLAYGLVRVLDEHGRAVGPWAPDLDPDILRKGIRAMLKTRIFDARMQIAQRQKKISFYMQCLGEEAIAVAHTLALERGDMCFPTYRQQGILMVREYPLVDMMCQLMSNERDPLKGRQLPVMYSTRDAGFFSISGNLATQFIQAVGWAMASAIKGDTRIASAWIGDGATAEADFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEGATFAGRGVGCGIASLRVDGNDFLAVYAASRWAAERARRNLGPTLIEWVTYRAGPHSTSDDPTKYRPGDDWTNFPLGDPLERLKRHMIGIGVWSEQDHEDTKAALEAEVLAAQKEAERYGTLADEHVPNVASIFEDVYKEMPAHLRRQRQQLGV
>NZ_CP009536.1|WP_004188282.1|772277_773321_-|alpha-ketoacid-dehydrogenase-subunit-beta
MTTASKEGPAASPMTMIQALRSAMDVMLERDGNVVVFGQDVGYFGGVFRCTEGLQNKYGKSRVFDAPINEGGIVGAAVGMGAYGLRPVCEIQFADYFYPASDQIVSEAARLRYRSAAEFIAPLTIRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLISAIENDDPVIFLEPKRLYNGPFDGHHERPVTPWSKHPASLVPDGYYTVPLDSAAIVRAGGDVTVLTYGTTVHVSLAAAEETGIDAEVIDLRSLWPLDLDTIVESVRRTGRCVVVHEATRTCGFGAELIALVQEHCFHWLEAPVERVTGWDTPYPHAQEWAYFPGPNRVGDALRRAMEN
>NZ_CP009536.1|WP_045597605.1|785951_787229_+|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPLEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPRRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
>NZ_CP009536.1|WP_024431683.1|787444_789286_+|ribonucleotide-reductase-like-protein
MRTINKRTRAIAHADSFVRMIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP009536.1|WP_004532595.1|789360_791172_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELAARRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLERALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDHSDAGAAVLATQRASADPLDADERARTIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NZ_CP009536.1|WP_004523279.1|791742_792774_+|hypothetical-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP009536.1|WP_009982176.1|792770_794600_+|STAS-domain-containing-protein
MTERERAARGRNDARRGGGDSGDDKAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEADAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP009536.1|WP_028201535.1|794728_795076_-|hypothetical-protein
MDGCCRLVSSRLVSSRLAPCCVYIDIQGEGDVDVDAEGNGNGNIDVIDSKRCEPSGVEPVERAVRRPRYRAQSGCLSGIHRNGIVMPDPMPPPNRFDRLRASAVIVDRTKPRRSP
>NZ_CP009536.1|WP_004530663.1|795071_795521_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKDVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP009536.1|WP_004552281.1|795974_796628_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDVYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP009536.1|WP_004529498.1|796695_797130_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP009536.1|WP_004188244.1|797531_798662_-|porin
MMNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVVRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASIVLKYASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRSANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF

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Crispr_ID: NZ_CP009536_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009536_3

2387285-2387449

Orphan

Consensus_repeat	Method
GCGAGCGCGGCGAGCGCGGCCGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP009536_3

>merge|NZ_CP009536|3|2387285-2387449|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGACAGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCGGCGAGCGCGGCCGCGCGATGGGCGCCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCGGCGAGCGCGGCCGCG

>NZ_CP009536|3|1|2387285-2387449|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGAC	AGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCG
GCGAGCGCGGCCGCGCGATGGGCG	CCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCG
GCGAGCGCGGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009536.1\|WP_004524130.1\|2397232_2397505_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NZ_CP009536.1\|WP_009968316.1\|2392603_2392855_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009536.1\|WP_004184766.1\|2397608_2399003_-\|heavy-metal-sensor-histidine-kinase-IrlS	unknown	unknown	gnl\|CDD\|273593
NZ_CP009536.1\|WP_009968315.1\|2391626_2392319_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP009536.1\|WP_004524117.1\|2382040_2383045_+\|FecR-family-protein	unknown	unknown	gnl\|CDD\|236622
NZ_CP009536.1\|WP_004537036.1\|2383171_2385817_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP009536.1\|WP_004202588.1\|2394496_2395966_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP009536.1\|WP_011853135.1\|2376381_2377395_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP009536.1\|WP_004524116.1\|2381534_2382044_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NZ_CP009536.1\|WP_157129650.1\|2390970_2391468_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009536.1\|WP_038773403.1\|2388083_2389901_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009536.1\|WP_024428520.1\|2386028_2387009_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321
NZ_CP009536.1\|WP_009968318.1\|2393017_2394277_-\|monooxygenase	unknown	unknown	gnl\|CDD\|173852
NZ_CP009536.1\|WP_028201567.1\|2379643_2380630_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP009536.1\|WP_004542736.1\|2378761_2379586_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227949
NZ_CP009536.1\|WP_004539128.1\|2396342_2396591_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009536.1\|WP_024431054.1\|2381282_2381513_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009536.1\|WP_004528277.1\|2380669_2381029_+\|lipoprotein	unknown	unknown	gnl\|CDD\|226765
NZ_CP009536.1\|WP_004202597.1\|2389897_2390908_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP009536.1\|WP_004199294.1\|2378243_2378765_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123

Protein	Function_ID	Function_description	E-value
NZ_CP009536.1\|WP_004184766.1\|2397608_2399003_-\|heavy-metal-sensor-histidine-kinase-IrlS	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NZ_CP009536.1\|WP_009968315.1\|2391626_2392319_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	3.40742e-14
NZ_CP009536.1\|WP_004524117.1\|2382040_2383045_+\|FecR-family-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	2.1512e-74
NZ_CP009536.1\|WP_004528277.1\|2380669_2381029_+\|lipoprotein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	2.7211e-31
NZ_CP009536.1\|WP_004202588.1\|2394496_2395966_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.5363e-36
NZ_CP009536.1\|WP_011853135.1\|2376381_2377395_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	7.02313e-24
NZ_CP009536.1\|WP_004524116.1\|2381534_2382044_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	7.12237e-71
NZ_CP009536.1\|WP_004524130.1\|2397232_2397505_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	9.38719e-09
NZ_CP009536.1\|WP_038773403.1\|2388083_2389901_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	2.75775e-176
NZ_CP009536.1\|WP_024428520.1\|2386028_2387009_-\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	2.37973e-52
NZ_CP009536.1\|WP_009968318.1\|2393017_2394277_-\|monooxygenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	1.09471e-136
NZ_CP009536.1\|WP_028201567.1\|2379643_2380630_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	4.51529e-28
NZ_CP009536.1\|WP_004542736.1\|2378761_2379586_+\|anti-sigma-factor	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	1.15709e-18
NZ_CP009536.1\|WP_004537036.1\|2383171_2385817_+\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	6.96412e-87
NZ_CP009536.1\|WP_004202597.1\|2389897_2390908_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	6.84336e-121
NZ_CP009536.1\|WP_004199294.1\|2378243_2378765_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	2.21088e-40

>NZ_CP009536.1|WP_024428520.1|2386028_2387009_-|ABC-transporter-permease
MRDATDRLSRFAALGALAAVLAFFAVAAPGFATLANVEHVLVNHFALLAIAALGMTLALSIGAIDLSLGTAIDVASLAFVCALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHGVWLGVAAPLWIVAALAGALHVALERSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAPQAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRARDAGQSG
>NZ_CP009536.1|WP_004537036.1|2383171_2385817_+|TonB-dependent-receptor
MDSICNRRPRRAHAGVCADTANAPAGLPEAAQPAARLGAGRPRDAAAPRCARQATSHTSHASHTLHAPCMPQFAPRRVVARVAAAALFSACAAPGVSGAAEPAAATRGYDIPAGPLDAALTRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLLTGTGLVALRQPSGGYTLARLPGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQQVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSLNATTDSVEVLKGPASLLYGIMDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTFDSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSLAWYGRDTQMVLSYEYRRFLMPFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNRETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDGEYRQVYRADMLRQPIKTPFSYLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLSERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAGIVYKWNDALSLYGSYTQSLKPTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDATNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYAGNRLWNVARHTASLAAVYDVGTVLGGDDLRIGAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQKLQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQF
>NZ_CP009536.1|WP_004524117.1|2382040_2383045_+|FecR-family-protein
MSGAKPAGGPPAVPERVARRAVQWWVELGAAPASDATRARLARWRAEHPAHDAAWRHIEAVNGRLGHVASALSARAARAALLPPRSRGRRAALKALAVLLFAGGGAWTGQAYLPWRAWGADVRTALGERRTITLADGTTVVLNTDTAIDIRFDDATRGVRLLRGEIMVTSGRDAARAVPRALVIATAHGDVRPVGTRFSVRERGDATRVDVFDGAVRIAPRRAVGRAPLITAGHGADFTRDALAGPPRVLGASAGAWVDGILVASNLRLADLLAEIDRYRPGRVRCDAAVANLRVSGTYPLDDTDRILDTLRETLPVDVEYLSRYWVTVVAARD
>NZ_CP009536.1|WP_004524116.1|2381534_2382044_+|sigma-70-family-RNA-polymerase-sigma-factor
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
>NZ_CP009536.1|WP_024431054.1|2381282_2381513_+|hypothetical-protein
MHAADAAAVATFRLSAGSASRVRRVPAVPARRFGEAAGPRAPPKRRGAPQTVRTHSPSGYKYVYNNHSHLQNSIPA
>NZ_CP009536.1|WP_004528277.1|2380669_2381029_+|lipoprotein
MIRNVLIALVCAAPVAALAEPPKAAGGMIVDDDGMTLYTFDRDTMPGKSACTGGCTANWPAALADAYDKPGGDLGFIAAAGGKHQWTYKGRPLYRFSGDAKPGQHTGDGFGGMWHVARP
>NZ_CP009536.1|WP_028201567.1|2379643_2380630_+|YceI-family-protein
MDAAGSFASFAATLACALSAWLAPSAGIAQTAWPPDAPRVAGASGPPRTPGLARTPAAVTDAPGAATAGALAASPPAATRYRLDPRHSGVTFRVDNFWHAHLTMRFARMRAELSDVGDDRLASRVDVTVDAASLGANVPFVAALVKGSAMLDVARYPEIRFVGTRFERTGATTGVLTGELTIRAMTRPITLAVRFDAGRQLEPDTGARAEREGDESDESGESNPAERRAGQSRRAAELRDGRPRDAGPGVADSRDAMRRETDSGSAHRGAEPPERIARAAPDAARPLAFVADGHFSRTAFGLSRWLPAVGDDVRLRIRAEFVRARADP
>NZ_CP009536.1|WP_004542736.1|2378761_2379586_+|anti-sigma-factor
MSDDPDLCVAPESDEPGLLALSAFVDGELPDAQSRAMARRLASDPRAAGIAAHYRAQRAALRALFADPVATRHGPCVAWPVRTPWWRRAAFAGGALAAGVALGWLGGALAPRFAPSAALQWVAPAAAQRAFARDADLAYALYAPDARHPVEIAVGRDGAPLAWLSARVGRRIAAPSLREYGFALLGARLLPGAGGPAAQFMYENAAGERLALYVSASAQREAAVRPWRDGGRHTFYWVSERTAYALSGQLDEGRLRTIAADVCGELGGHPQRWR
>NZ_CP009536.1|WP_004199294.1|2378243_2378765_+|sigma-70-family-RNA-polymerase-sigma-factor
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR
>NZ_CP009536.1|WP_011853135.1|2376381_2377395_-|AraC-family-transcriptional-regulator
MPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVLPYREHLIAHPPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLVCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTFTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSADALDSVDTAGPRAAPGRGETRGAAGAKSPARAAAKPRA
>NZ_CP009536.1|WP_038773403.1|2388083_2389901_-|sugar-ABC-transporter-ATP-binding-protein
MKAALTTAAASAAAAPDAAGAPLALDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNGAGKSTLVKLLAGLHAPDEGEITVGGVPFASGGGGSRASAGAARRHSTGIGFIHQERLLPATFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRAVLHTQFGLDLAPDRLIGELSVAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDEIARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAAPSAATARAAARADARVSARADAWGDDPHRAPAGADPARPGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGLTGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHDAVAHGIALVPENRAAHGVALTLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKVALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDRVYVMARGEIVAQCASAETTTRDVLAWATLARDARPGGGAGAHDAAARTGTPGAAGAASSAAKVAT
>NZ_CP009536.1|WP_004202597.1|2389897_2390908_-|sugar-ABC-transporter-substrate-binding-protein
MLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGAVDEVKRLGGTPIALDAGRNDSRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGIPLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGNVLVFNGFYGVPVCAIRYDQLKAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGAISAIWAAWDIPQVGATQAVDAAGRREIRTYAVDGSPEAVALVRNPTSSAAAVVAQQPALIGRTAVRNVARYLAGDRSLPAYTFVPSVLVTKDDAGVARPALGQTPAAAGLARR
>NZ_CP009536.1|WP_157129650.1|2390970_2391468_+|hypothetical-protein
MEANERFCATTPAKGTIDSCFGYGMAANARAAQAKMRGGNRTQPARALAGPAASRASMPTPISAGTRDRRRVVSIGIGQSQINFSAMLNQPDDAPLNRKRLIASQSENAAARAASNETKSSRKRSARAKFRAGMQENPYERPPRRMIRRGGGAARFDGGFANGCI
>NZ_CP009536.1|WP_009968315.1|2391626_2392319_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MATTRRHATATALAAAARPCAAPHADSFLGILIEVFARVVAALALGVFAYAAYLQWRLDPSRITLILLAVSTTLTVGLSLFAEPPKKRDWSPLALFFSVGGTFYYLVFQLTASRQLLPEAAGAAIQLIGLFWQLFAKVSLRKSFGILPANRGIVSRGAYRFVRHPMYLGYLIIDTGFLLTNFSARNLIAVALQIGLQLGRIRREERLLSEDAAYRAYRRSVRYRVIPGLF
>NZ_CP009536.1|WP_009968316.1|2392603_2392855_-|hypothetical-protein
MFSTLSHVLPRVALLGEPLANAPFVDGEITRPFRDGFWLLPHSTLCLPLAASDMVIVEPDWPGSAGALAGRQLDAGRQSPSPL
>NZ_CP009536.1|WP_009968318.1|2393017_2394277_-|monooxygenase
MSHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALRVPVHAGGAGASVPQLVQLLIELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFASGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYSTGAIFADWIDVYAQRTDDGGPVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQLFHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQAVGEISAWAYAAEAIALRAAQPSQRAYEARVGGDAAAEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASATRATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPPYVWQIGAGPGGPREPEQAA
>NZ_CP009536.1|WP_004202588.1|2394496_2395966_-|MFS-transporter
MSTLDLDAPISTPIRTASDVSRLINASGARANHARVIVLLALGGVFLDAYDLTTLSYGIEDVTREFGLTPALSGLVSASIMIGTILGSLLGGWFTDKVGRYRVFMADMLCFVVAAIVAGLAPNVEVLIAARFVMGLGVGIDLPVAMAFLAEFSKFGGRGNKASRLAAWCPMWYAASSVCFLIVFGLYFALPAEHARWLWRASLIFGAVPALAIIAVRGRYMNESPLWAANQGKLRDAARILRESYGIRAHAADDTPRAAPSQPPVSFRVLFRQPYLPRTLVASAMNLCIPFEYTAIAFFLPTILTQFLGAGVFETIAATLALNVLFALTGGLLGMRLAYRLPSRRVAIAGFALQAAALVTLALLGHPQTALGIGAAVLMLGLWLFAEGFGPGAQMMIYPALSYPASIRGTGLGFGRALTGIGSAFALFVLPILNARLGAGMFWIVAIAAFVPIVFLAAIRFEPTARDVDVDIDAGSRAQGDRARVRAAA
>NZ_CP009536.1|WP_004539128.1|2396342_2396591_-|hypothetical-protein
MKAPIIAIAFGIALAACAPLRQDSRSGEAGPPIAAPNRGGGNTPPSGARRAANEVVDYAGRPCVNQTLYVKTHPCIFPRLQR
>NZ_CP009536.1|WP_004524130.1|2397232_2397505_+|DUF4148-domain-containing-protein
MNTKTTIVWATAAALTALALSPAAFAQGKTRDEVRQELIRAQHEGVVPAGKNDYPPSAALVARNKELHAISVHGGKTDLALDQHDQTVAR
>NZ_CP009536.1|WP_004184766.1|2397608_2399003_-|heavy-metal-sensor-histidine-kinase-IrlS
MIRRLLPRTLRARLTALIILSTAATLALSGVALYSALHNRLVGMSSYEMSATLAAMRTHLANVANVDDIPRKSDLWIDQLHGHQNLDLAIYDTDGRLRFATRGFVAPRPALGAPQTRVPASAAPAGATFSYLADDAPLRGGNPRTARIVVQYDGKNDHALLRAYAYTVVVIEVLAVVLTAALAYGIAMLGLSPLRRLVARAEQMSSSRLAQPLPELDTSGELKEMEHAFNAMLKRLDESFVRLSQFSSNLAHDMRTPLTNLLAEAQVALSKPRTADEYRDVIESSIDEYQRLSRMIEDMLFLARSDNAQSHLAIRTLDAAAQAERVAGYYEPMAEDAEVSIVVRGKAEVRADALLYHRALSNLISNALNHAPRGSTITIECAQAADAATISVSDTGRGIEAPHRERIFERFYRVDPARHNSASGTGLGLAIVRSIMENHGGTCGVDSEPHVRTTFWLKFPAHAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

476207 : 565815

Leptospira_phage(13.33%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004529292.1\|476207_476936_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	8.4e-23	31.7
WP_009969386.1\|477139_477580_-	hypothetical protein	NA	NA	NA	NA
WP_038802333.1\|478139_479260_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.6e-49	39.5
WP_009969387.1\|479290_479665_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004525642.1\|482208_483429_+\|transposase	ISL3-like element ISBma1 family transposase	A9YX10	Burkholderia_phage	2.7e-239	99.8
WP_009941131.1\|483477_483807_-	hypothetical protein	NA	NA	NA	NA
WP_038722308.1\|483813_493125_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_071811406.1\|493276_493474_-	hypothetical protein	NA	NA	NA	NA
WP_004533385.1\|493474_493738_-	putative Immunity protein 75	NA	NA	NA	NA
WP_028200696.1\|494329_498988_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	8.3e-23	34.9
WP_009969391.1\|498974_500243_-	hypothetical protein	NA	NA	NA	NA
WP_009935222.1\|500258_502463_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.7e-42	28.0
WP_009982075.1\|505922_506390_+	decarboxylase	NA	NA	NA	NA
WP_009969395.1\|506545_507571_+	hypothetical protein	NA	NA	NA	NA
WP_009969396.1\|508134_508734_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_004524853.1\|508758_509169_-	RidA family protein	NA	NA	NA	NA
WP_009969397.1\|509283_510393_-	asparaginase	NA	NA	NA	NA
WP_004544583.1\|510574_511207_+	hypothetical protein	NA	NA	NA	NA
WP_004524850.1\|513241_513679_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004555369.1\|514915_515989_-	porin	NA	NA	NA	NA
WP_004540527.1\|516406_517831_-	aldehyde dehydrogenase (NADP(+))	NA	NA	NA	NA
WP_025986264.1\|518046_519231_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_004524845.1\|519241_520129_-	aldose 1-epimerase	NA	NA	NA	NA
WP_009969404.1\|520131_520902_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_004544686.1\|520916_521780_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-13	25.4
WP_004524842.1\|521776_522745_-	ABC transporter permease	NA	NA	NA	NA
WP_004524841.1\|522765_523764_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004524840.1\|523801_525004_-	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	6.9e-46	31.9
WP_004557914.1\|525014_525728_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_004544619.1\|525859_526750_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_004544660.1\|527191_527788_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	6.0e-27	38.1
WP_004524834.1\|529407_529755_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-40	72.9
WP_004524833.1\|529751_530159_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	3.2e-11	36.5
WP_009969406.1\|530591_532625_-	hypothetical protein	NA	NA	NA	NA
WP_004546333.1\|532865_535037_-	alpha-galactosidase	NA	NA	NA	NA
WP_004524829.1\|535041_535893_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_009969407.1\|535893_536817_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004524827.1\|536879_538121_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004524825.1\|538156_539401_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_004557920.1\|539443_540082_-	hypothetical protein	NA	NA	NA	NA
WP_004536893.1\|541854_543009_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_004524822.1\|544771_545512_+	hypothetical protein	NA	NA	NA	NA
WP_024429920.1\|545940_546096_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.8e-07	75.7
WP_076838784.1\|548854_549421_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_071811399.1\|549422_549677_-	hypothetical protein	NA	NA	NA	NA
WP_004544694.1\|549680_550082_-	VENN motif pre-toxin domain-containing protein	NA	NA	NA	NA
WP_076851816.1\|554364_555516_+	hypothetical protein	NA	NA	NA	NA
WP_071811398.1\|555526_555814_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157726745.1\|556820_557054_-\|transposase	transposase	S5WIU1	Leptospira_phage	3.9e-14	58.6
WP_038722314.1\|558763_559474_-	hypothetical protein	NA	NA	NA	NA
WP_009969419.1\|559489_561694_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_004533146.1\|561690_564357_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	5.2e-78	30.6
WP_004537556.1\|564369_565815_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

977433 : 1043534

Ralstonia_phage(28.57%)

transposase,plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004187738.1\|977433_979629_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_004552613.1\|980204_980861_+	hypothetical protein	NA	NA	NA	NA
WP_023358215.1\|981414_982584_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.9e-32	30.1
WP_080002191.1\|983946_984201_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_009939053.1\|984197_985217_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004533753.1\|985236_985689_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004552620.1\|986178_987093_+	ABC transporter permease	NA	NA	NA	NA
WP_076852848.1\|987076_987931_+	ABC transporter permease	NA	NA	NA	NA
WP_004552621.1\|987927_988959_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_004528499.1\|989546_989852_+	H-NS histone family protein	NA	NA	NA	NA
WP_038722417.1\|990172_992959_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.1e-89	34.6
WP_045597627.1\|992972_995213_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	6.8e-23	27.4
WP_095413486.1\|995351_996890_+	DUF2875 family protein	NA	NA	NA	NA
WP_045597630.1\|996899_997163_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004523721.1\|997577_997997_-	YjbQ family protein	NA	NA	NA	NA
WP_004523720.1\|998016_998343_-	thioredoxin family protein	NA	NA	NA	NA
WP_009967412.1\|998814_999507_+	hypothetical protein	NA	NA	NA	NA
WP_009967413.1\|1000092_1000800_-	DUF2244 domain-containing protein	NA	NA	NA	NA
WP_009967414.1\|1000796_1002392_-	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	1.9e-06	33.3
WP_004533827.1\|1002646_1002850_-	hypothetical protein	NA	NA	NA	NA
WP_009967418.1\|1003544_1005002_-	hypothetical protein	NA	NA	NA	NA
WP_157129648.1\|1005346_1005706_-	hypothetical protein	NA	NA	NA	NA
WP_045597632.1\|1006554_1008792_+	hypothetical protein	A0A2C9CZG8	Yersinia_phage	5.2e-07	46.1
WP_004545009.1\|1008858_1010310_-	PhoPQ-regulated protein	NA	NA	NA	NA
WP_004523708.1\|1010381_1010597_+	hypothetical protein	NA	NA	NA	NA
WP_004549711.1\|1010607_1011162_-	hypothetical protein	NA	NA	NA	NA
WP_004533867.1\|1011746_1012292_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_004529635.1\|1012371_1013094_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_045597633.1\|1013206_1015951_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_025986099.1\|1015943_1016516_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_004537300.1\|1016547_1017237_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004523701.1\|1017239_1018916_+	OmpA family protein	NA	NA	NA	NA
WP_004523700.1\|1019293_1019833_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004523699.1\|1019866_1021366_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004529642.1\|1021565_1022048_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_095413485.1\|1022175_1022718_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004523698.1\|1022723_1024073_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004556024.1\|1024069_1025371_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_009981084.1\|1025385_1029294_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004529647.1\|1029483_1030053_+	hypothetical protein	NA	NA	NA	NA
WP_038747471.1\|1030150_1032823_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.3e-35	26.0
WP_004523693.1\|1032897_1033167_+	PAAR motif protein	NA	NA	NA	NA
WP_028200913.1\|1033179_1036632_+	RHS repeat protein	NA	NA	NA	NA
WP_038721648.1\|1036524_1037883_-	hypothetical protein	A0A292GJ55	Xanthomonas_phage	3.4e-110	45.4
WP_004536657.1\|1037915_1038944_-	fimbrial protein	NA	NA	NA	NA
WP_009967433.1\|1038998_1040069_-	type VI secretion protein ImpA	NA	NA	NA	NA
WP_004544916.1\|1040087_1041137_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004523687.1\|1041133_1043014_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004523686.1\|1043015_1043534_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

1426332 : 1432981

Burkholderia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101536333.1\|1426332_1427452_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.5e-50	39.9
WP_076853050.1\|1427574_1427982_+	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	9.1e-35	53.3
WP_004542548.1\|1430021_1430603_+	hypothetical protein	A9YX38	Burkholderia_phage	2.2e-21	100.0
WP_160458000.1\|1430833_1431133_-	hypothetical protein	Q6JIH9	Burkholderia_virus	1.9e-34	97.2
WP_004552390.1\|1431099_1431321_-	hypothetical protein	NA	NA	NA	NA
WP_009923452.1\|1431456_1431588_-	bacteriophage protein Gp48	Q8W6Q2	Burkholderia_virus	2.6e-15	97.7
WP_004537565.1\|1431597_1431873_-	bacteriophage protein Gp49	Q6JIH4	Burkholderia_virus	5.2e-42	95.6
WP_009939402.1\|1432539_1432713_+	BrnT family toxin	NA	NA	NA	NA
WP_004525420.1\|1432696_1432981_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0

DBSCAN-SWA_4

1563964 : 1649007

Burkholderia_phage(93.33%)

plate,capsid,terminase,transposase,holin,integrase,tail

attL 1553680:1553699|attR 1617391:1617410

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1553680:1553699	attL	NA	NA	NA	NA
WP_009967802.1\|1563964_1565197_-\|capsid	minor capsid protein	B5TA65	Burkholderia_phage	6.1e-215	88.5
WP_038721755.1\|1565349_1566879_-	DUF935 family protein	B5TA67	Burkholderia_phage	4.4e-247	88.0
WP_009967805.1\|1566868_1568485_-\|terminase	phage terminase large subunit	B5TA68	Burkholderia_phage	1.4e-304	92.6
WP_009967806.1\|1568491_1568989_-	DUF1804 family protein	B5TA69	Burkholderia_phage	8.4e-83	95.2
WP_009927781.1\|1568992_1569283_-	hypothetical protein	B5TA70	Burkholderia_phage	1.3e-40	89.6
WP_038721757.1\|1569279_1569501_-	hypothetical protein	B5TA71	Burkholderia_phage	1.9e-31	89.0
WP_009967808.1\|1570069_1570744_-	lytic transglycosylase domain-containing protein	B5TA73	Burkholderia_phage	2.2e-89	81.2
WP_038721770.1\|1570740_1571052_-	membrane protein	B5TA74	Burkholderia_phage	4.4e-37	70.2
WP_009967812.1\|1571171_1571444_-	hypothetical protein	NA	NA	NA	NA
WP_009967814.1\|1571440_1571923_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_009967816.1\|1572286_1572820_-	hypothetical protein	B5TA76	Burkholderia_phage	1.5e-66	74.0
WP_038721759.1\|1572863_1573349_-	helix-turn-helix transcriptional regulator	B5TA77	Burkholderia_phage	3.4e-52	71.3
WP_009927791.1\|1573430_1573622_+	DNA-binding protein	B5TA78	Burkholderia_phage	2.7e-21	89.3
WP_099975987.1\|1574008_1574665_+	hypothetical protein	B5TA79	Burkholderia_phage	1.0e-91	81.9
WP_038721760.1\|1574704_1576330_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	B5TA80	Burkholderia_phage	6.6e-302	95.2
WP_009967820.1\|1576339_1577332_+	AAA family ATPase	B5TA81	Burkholderia_phage	3.9e-180	97.0
WP_009967822.1\|1577339_1577528_+	hypothetical protein	B5TA82	Burkholderia_phage	7.7e-13	63.8
WP_038721762.1\|1577524_1577830_+	hypothetical protein	B5TA83	Burkholderia_phage	6.4e-33	73.3
WP_038721763.1\|1577816_1578404_+	hypothetical protein	B5TA84	Burkholderia_phage	1.4e-84	92.9
WP_009967824.1\|1578400_1579027_+	DUF3164 family protein	B5TA85	Burkholderia_phage	9.6e-100	89.9
WP_009967825.1\|1579040_1579433_+	ASCH domain-containing protein	B5TA86	Burkholderia_phage	2.3e-59	83.1
WP_009967826.1\|1579496_1579769_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	2.6e-33	85.6
WP_009967827.1\|1579857_1580175_+	hypothetical protein	B5TA88	Burkholderia_phage	3.7e-07	76.5
WP_009967828.1\|1580171_1580330_+	hypothetical protein	NA	NA	NA	NA
WP_009967829.1\|1580326_1580638_+	hypothetical protein	B5TA89	Burkholderia_phage	1.0e-30	64.6
WP_009967830.1\|1580639_1581074_+	regulatory protein GemA	B5TA90	Burkholderia_phage	6.3e-58	81.1
WP_009967831.1\|1581070_1581472_+	hypothetical protein	B5TA91	Burkholderia_phage	1.7e-62	89.5
WP_009967832.1\|1581687_1582836_+	hypothetical protein	B5TA92	Burkholderia_phage	9.1e-181	82.8
WP_009967834.1\|1582880_1583237_+	hypothetical protein	B5TA94	Burkholderia_phage	1.1e-41	77.1
WP_009967836.1\|1583288_1584236_+	hypothetical protein	B5TA95	Burkholderia_phage	5.6e-168	94.0
WP_038721772.1\|1584309_1584711_+	hypothetical protein	B5TA96	Burkholderia_phage	2.5e-16	75.8
WP_009967839.1\|1584707_1585211_+	DUF1320 family protein	B5TA97	Burkholderia_phage	1.5e-87	91.6
WP_009967840.1\|1585207_1585642_+	virion morphogenesis protein	B5TA98	Burkholderia_phage	1.0e-55	76.4
WP_009967842.1\|1585641_1586238_+	DUF1834 family protein	B5TA99	Burkholderia_phage	2.4e-47	48.2
WP_009967844.1\|1586224_1586491_+	hypothetical protein	B5TAA0	Burkholderia_phage	3.1e-15	63.2
WP_009967845.1\|1586537_1588016_+\|tail	tail sheath protein	B5TAA1	Burkholderia_phage	8.9e-221	76.0
WP_038721765.1\|1588062_1588434_+	hypothetical protein	B5TAA2	Burkholderia_phage	1.6e-46	72.4
WP_009967847.1\|1588527_1589076_+	hypothetical protein	B5TAA3	Burkholderia_phage	2.6e-61	67.4
WP_099975988.1\|1589454_1591800_+\|tail	phage tail tape measure protein	B5TAA4	Burkholderia_phage	5.6e-193	68.0
WP_038721767.1\|1591799_1593176_+	multidrug DMT transporter	B5TAA5	Burkholderia_phage	1.7e-194	75.3
WP_009967850.1\|1593179_1594346_+	hypothetical protein	B5TAA6	Burkholderia_phage	8.9e-184	80.3
WP_009967851.1\|1594342_1594837_+\|plate	baseplate assembly protein	B5TAA7	Burkholderia_phage	4.5e-52	61.4
WP_038721769.1\|1594922_1595510_+\|tail	tail protein	B5TAA8	Burkholderia_phage	5.3e-76	68.8
WP_009967855.1\|1595506_1596628_+\|plate	baseplate J/gp47 family protein	B5TAA9	Burkholderia_phage	4.0e-149	71.3
WP_009967856.1\|1596627_1597224_+	DUF2313 domain-containing protein	B5TAB0	Burkholderia_phage	2.3e-58	60.7
WP_009967858.1\|1597235_1598522_+	hypothetical protein	A4JWL8	Burkholderia_virus	3.2e-126	61.8
WP_009967859.1\|1598535_1598970_+\|tail	tail assembly chaperone	A4JWL9	Burkholderia_virus	6.1e-45	78.3
WP_004542564.1\|1599216_1599423_+	hypothetical protein	NA	NA	NA	NA
WP_004551378.1\|1599718_1601134_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_004525527.1\|1601228_1602170_+	alpha-E domain-containing protein	NA	NA	NA	NA
WP_004525528.1\|1602178_1603135_+	transglutaminase family protein	NA	NA	NA	NA
WP_045597678.1\|1603271_1606694_+	transglutaminase family protein	NA	NA	NA	NA
WP_004187774.1\|1606833_1609530_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_004542546.1\|1609520_1610543_+	transglutaminase family protein	NA	NA	NA	NA
WP_045597680.1\|1610730_1612233_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_004535247.1\|1612336_1613548_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_004187681.1\|1613861_1614935_-	FUSC family protein	NA	NA	NA	NA
WP_004196021.1\|1615173_1616139_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_025986123.1\|1616211_1616979_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_009969848.1\|1617124_1618192_-	2-aminoethylphosphonate aminotransferase	NA	NA	NA	NA
1617391:1617410	attR	NA	NA	NA	NA
WP_004530031.1\|1618206_1619388_-	phosphonopyruvate decarboxylase	NA	NA	NA	NA
WP_004525540.1\|1619384_1621073_-	phosphoenolpyruvate mutase	NA	NA	NA	NA
WP_004525541.1\|1621069_1621837_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_004206084.1\|1621875_1622877_-	HpnL family protein	NA	NA	NA	NA
WP_009969809.1\|1622873_1623647_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_009969808.1\|1623643_1624339_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_009969807.1\|1624703_1626218_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_004525545.1\|1627927_1628866_+	hypothetical protein	NA	NA	NA	NA
WP_004202234.1\|1628899_1629448_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004190846.1\|1629450_1630956_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|1631099_1631627_+	hypothetical protein	NA	NA	NA	NA
WP_004190879.1\|1631706_1632138_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004196180.1\|1632151_1634014_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|1634010_1635000_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004525547.1\|1635002_1637873_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_004536618.1\|1637863_1640155_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004190563.1\|1640320_1642609_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004547074.1\|1642612_1644829_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004525550.1\|1644828_1645899_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004525551.1\|1645901_1646618_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|1646660_1647050_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004202226.1\|1647055_1647649_+	hypothetical protein	NA	NA	NA	NA
WP_004525552.1\|1647645_1649007_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009535

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009536

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection