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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP009538 Burkholderia pseudomallei K96243 chromosome I, complete sequence 5 crisprs WYL,RT,cas3,DEDDh,csa3,DinG 0 1 282 0
NZ_CP009537 Burkholderia pseudomallei K96243 chromosome II, complete sequence 3 crisprs cas3,csa3,DinG 0 0 6 0

Results visualization

1. NZ_CP009538
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009538_1 205115-205251 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009538_2 1518583-1518705 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009538_3 1587214-1587293 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009538_4 1810133-1810203 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009538_5 3707773-3707871 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP009538_4 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder 1810156-1810180 25 MN035431 Leviviridae sp. isolate H2_Bulk_35_scaffold_4486 hypothetical protein (H2Bulk354486_000001) gene, partial cds; hypothetical protein (H2Bulk354486_000002) gene, complete cds; and RNA-dependent RNA polymerase (H2Bulk354486_000003) gene, partial cds 916-940 3 0.88
NZ_CP009538_4 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder 1810156-1810180 25 MK524491 Mycobacterium phage Whabigail7, complete genome 48031-48055 4 0.84
NZ_CP009538_4 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder 1810156-1810180 25 MT498041 Mycobacterium phage KingCyrus, complete genome 49006-49030 4 0.84
NZ_CP009538_4 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder 1810156-1810180 25 KX619650 Mycobacterium phage Jerm, complete genome 48140-48164 4 0.84
NZ_CP009538_4 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder 1810156-1810180 25 JN408460 Mycobacterium phage Turbido, complete genome 48033-48057 4 0.84
NZ_CP009538_4 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder 1810156-1810180 25 MH077576 Mycobacterium phage AbbyPaige, complete genome 48089-48113 4 0.84
NZ_CP009538_4 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder 1810156-1810180 25 KU985095 Mycobacterium phage ChipMunk, complete genome 48992-49016 4 0.84
NZ_CP009538_4 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder 1810156-1810180 25 MH825704 Mycobacterium phage LilTurb, complete genome 48017-48041 4 0.84
NZ_CP009538_4 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder 1810156-1810180 25 KU985093 Mycobacterium phage EvilGenius, complete genome 48993-49017 4 0.84

1. spacer 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder matches to MN035431 (Leviviridae sp. isolate H2_Bulk_35_scaffold_4486 hypothetical protein (H2Bulk354486_000001) gene, partial cds; hypothetical protein (H2Bulk354486_000002) gene, complete cds; and RNA-dependent RNA polymerase (H2Bulk354486_000003) gene, partial cds) position: , mismatch: 3, identity: 0.88

tggtgcggctgccgctttgcgggag	CRISPR spacer
cggtgaggctgccgctttgcaggag	Protospacer
.**** **************.****

2. spacer 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder matches to MK524491 (Mycobacterium phage Whabigail7, complete genome) position: , mismatch: 4, identity: 0.84

tggtgcggctgccgctttgcgggag	CRISPR spacer
gcgtgcggctgtcgctctgcgggag	Protospacer
  *********.****.********

3. spacer 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder matches to MT498041 (Mycobacterium phage KingCyrus, complete genome) position: , mismatch: 4, identity: 0.84

tggtgcggctgccgctttgcgggag	CRISPR spacer
gcgtgcggctgtcgctctgcgggag	Protospacer
  *********.****.********

4. spacer 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder matches to KX619650 (Mycobacterium phage Jerm, complete genome) position: , mismatch: 4, identity: 0.84

tggtgcggctgccgctttgcgggag	CRISPR spacer
gcgtgcggctgtcgctctgcgggag	Protospacer
  *********.****.********

5. spacer 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder matches to JN408460 (Mycobacterium phage Turbido, complete genome) position: , mismatch: 4, identity: 0.84

tggtgcggctgccgctttgcgggag	CRISPR spacer
gcgtgcggctgtcgctctgcgggag	Protospacer
  *********.****.********

6. spacer 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder matches to MH077576 (Mycobacterium phage AbbyPaige, complete genome) position: , mismatch: 4, identity: 0.84

tggtgcggctgccgctttgcgggag	CRISPR spacer
gcgtgcggctgtcgctctgcgggag	Protospacer
  *********.****.********

7. spacer 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder matches to KU985095 (Mycobacterium phage ChipMunk, complete genome) position: , mismatch: 4, identity: 0.84

tggtgcggctgccgctttgcgggag	CRISPR spacer
gcgtgcggctgtcgctctgcgggag	Protospacer
  *********.****.********

8. spacer 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder matches to MH825704 (Mycobacterium phage LilTurb, complete genome) position: , mismatch: 4, identity: 0.84

tggtgcggctgccgctttgcgggag	CRISPR spacer
gcgtgcggctgtcgctctgcgggag	Protospacer
  *********.****.********

9. spacer 4.1|1810156|25|NZ_CP009538|CRISPRCasFinder matches to KU985093 (Mycobacterium phage EvilGenius, complete genome) position: , mismatch: 4, identity: 0.84

tggtgcggctgccgctttgcgggag	CRISPR spacer
gcgtgcggctgtcgctctgcgggag	Protospacer
  *********.****.********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 22426 18 Ralstonia_phage(100.0%) coat NA
DBSCAN-SWA_2 32531 : 35330 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_3 46683 : 52278 3 uncultured_phage(50.0%) NA NA
DBSCAN-SWA_4 87168 : 95943 11 Ralstonia_virus(33.33%) integrase attL 79100:79115|attR 90755:90770
DBSCAN-SWA_5 110196 : 121615 10 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_6 128361 : 129507 1 Halovirus(100.0%) NA NA
DBSCAN-SWA_7 133784 : 141091 7 Bacillus_phage(20.0%) NA NA
DBSCAN-SWA_8 159696 : 160098 1 Wolbachia_phage(100.0%) NA NA
DBSCAN-SWA_9 171655 : 175999 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_10 179319 : 180684 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 189899 : 190928 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_12 207952 : 214458 2 Virus_Rctr197k(50.0%) NA NA
DBSCAN-SWA_13 225577 : 226348 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_14 261054 : 262329 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_15 292228 : 292819 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_16 318637 : 332526 15 Micromonas_sp._RCC1109_virus(40.0%) NA NA
DBSCAN-SWA_17 336448 : 340392 3 Burkholderia_virus(50.0%) NA NA
DBSCAN-SWA_18 347099 : 353047 3 Hokovirus(50.0%) NA NA
DBSCAN-SWA_19 367361 : 384101 24 Pseudomonas_phage(22.22%) portal,integrase,terminase,tail,capsid,head attL 361153:361171|attR 374450:374468
DBSCAN-SWA_20 396307 : 397072 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_21 403712 : 413462 5 Bacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_22 417584 : 423110 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_23 438565 : 439519 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_24 444681 : 446580 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_25 452901 : 460867 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_26 464995 : 471507 3 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_27 488905 : 489508 1 Ochrobactrum_phage(100.0%) NA NA
DBSCAN-SWA_28 492976 : 494317 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_29 498261 : 498987 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_30 503621 : 513904 9 Bacillus_virus(20.0%) transposase NA
DBSCAN-SWA_31 538884 : 539454 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_32 542827 : 545005 1 Indivirus(100.0%) tRNA NA
DBSCAN-SWA_33 556797 : 557421 1 Vibrio_virus(100.0%) NA NA
DBSCAN-SWA_34 569084 : 571142 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_35 580176 : 581688 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_36 585521 : 586838 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_37 595261 : 597103 1 Liberibacter_phage(100.0%) NA NA
DBSCAN-SWA_38 604407 : 605235 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_39 611827 : 612007 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_40 625014 : 628511 4 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_41 643766 : 650778 6 Prochlorococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_42 654105 : 665072 10 Agrobacterium_phage(16.67%) protease NA
DBSCAN-SWA_43 668375 : 669221 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_44 683752 : 685910 2 Bacillus_thuringiensis_phage(50.0%) NA NA
DBSCAN-SWA_45 694714 : 695644 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_46 699077 : 712446 12 Catovirus(16.67%) tRNA NA
DBSCAN-SWA_47 736537 : 738409 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_48 746846 : 750616 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_49 753948 : 760653 3 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_50 765128 : 768394 3 uncultured_Mediterranean_phage(50.0%) protease NA
DBSCAN-SWA_51 773655 : 777413 4 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_52 795389 : 796103 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_53 800411 : 804009 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_54 818770 : 830246 8 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_55 857498 : 859307 1 Ectocarpus_siliculosus_virus(100.0%) NA NA
DBSCAN-SWA_56 888847 : 890164 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_57 896515 : 903056 4 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_58 911706 : 913164 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_59 916908 : 917688 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_60 922062 : 922779 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_61 926884 : 928417 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_62 931507 : 932230 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_63 937588 : 938653 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_64 959957 : 961829 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_65 973565 : 979127 5 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_66 988700 : 989525 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_67 1021436 : 1023029 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_68 1032589 : 1036669 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_69 1058710 : 1060738 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_70 1102712 : 1118128 14 Burkholderia_virus(14.29%) NA NA
DBSCAN-SWA_71 1122238 : 1123132 1 Thermobifida_phage(100.0%) NA NA
DBSCAN-SWA_72 1129747 : 1134359 6 uncultured_Mediterranean_phage(66.67%) tRNA NA
DBSCAN-SWA_73 1148888 : 1150758 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_74 1155757 : 1163444 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_75 1168537 : 1170304 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_76 1176479 : 1178048 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_77 1183901 : 1188034 4 Cedratvirus(50.0%) NA NA
DBSCAN-SWA_78 1191708 : 1198052 4 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_79 1210276 : 1211884 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_80 1217029 : 1219596 4 Red_sea_bream_iridovirus(50.0%) NA NA
DBSCAN-SWA_81 1223843 : 1225616 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_82 1260961 : 1262275 1 Stx2-converting_phage(100.0%) NA NA
DBSCAN-SWA_83 1266994 : 1267837 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_84 1274938 : 1275424 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_85 1284287 : 1285367 1 Dickeya_phage(100.0%) NA NA
DBSCAN-SWA_86 1297457 : 1299104 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_87 1304601 : 1305279 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_88 1309181 : 1310366 1 Emiliania_huxleyi_virus(100.0%) NA NA
DBSCAN-SWA_89 1348173 : 1349109 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_90 1359598 : 1361158 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_91 1368365 : 1373222 3 Escherichia_phage(33.33%) tRNA NA
DBSCAN-SWA_92 1383558 : 1390167 5 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_93 1408490 : 1409798 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_94 1426393 : 1431379 4 Sinorhizobium_phage(50.0%) NA NA
DBSCAN-SWA_95 1439432 : 1441438 2 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_96 1445636 : 1446929 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_97 1469451 : 1471095 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_98 1483197 : 1488176 5 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_99 1492016 : 1584744 100 Burkholderia_phage(49.12%) portal,plate,terminase,holin,tail,capsid,tRNA,head,protease NA
DBSCAN-SWA_100 1589057 : 1594329 4 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_101 1601099 : 1602219 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_102 1607563 : 1612293 2 Pseudomonas_phage(50.0%) integrase attL 1609768:1609784|attR 1618227:1618243
DBSCAN-SWA_103 1616463 : 1623401 6 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_104 1643858 : 1646411 2 Klosneuvirus(50.0%) holin NA
DBSCAN-SWA_105 1652631 : 1654458 2 Brazilian_cedratvirus(50.0%) NA NA
DBSCAN-SWA_106 1657577 : 1662663 2 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_107 1667606 : 1668404 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_108 1696815 : 1699341 3 Ralstonia_phage(50.0%) NA NA
DBSCAN-SWA_109 1717734 : 1721451 3 Catovirus(33.33%) NA NA
DBSCAN-SWA_110 1729208 : 1736327 6 Cedratvirus(25.0%) tRNA NA
DBSCAN-SWA_111 1745629 : 1747360 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_112 1759053 : 1760601 1 Hepacivirus(100.0%) NA NA
DBSCAN-SWA_113 1768252 : 1770763 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_114 1789876 : 1792804 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_115 1799846 : 1813273 14 Ralstonia_phage(50.0%) coat,integrase attL 1803448:1803500|attR 1814995:1815047
DBSCAN-SWA_116 1816462 : 1817107 1 Apis_mellifera_filamentous_virus(100.0%) NA NA
DBSCAN-SWA_117 1834833 : 1835982 1 Stenotrophomonas_phage(100.0%) NA NA
DBSCAN-SWA_118 1860162 : 1860558 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_119 1871677 : 1873099 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_120 1885177 : 1887711 3 Agrobacterium_phage(50.0%) NA NA
DBSCAN-SWA_121 1902197 : 1906420 3 Escherichia_phage(50.0%) integrase attL 1897737:1897750|attR 1908798:1908811
DBSCAN-SWA_122 1924163 : 1924850 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_123 1949636 : 1950827 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_124 1954816 : 1969924 7 Cafeteria_roenbergensis_virus(20.0%) NA NA
DBSCAN-SWA_125 2011037 : 2012926 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_126 2029648 : 2030467 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_127 2034119 : 2035046 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_128 2039673 : 2040744 1 Faustovirus(100.0%) NA NA
DBSCAN-SWA_129 2047016 : 2049347 2 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_130 2053893 : 2074955 18 Pseudomonas_phage(16.67%) plate,transposase,integrase,protease attL 2053723:2053738|attR 2062571:2062586
DBSCAN-SWA_131 2086077 : 2088339 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_132 2091862 : 2094028 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_133 2105548 : 2105752 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_134 2111207 : 2119667 7 Pseudomonas_phage(33.33%) tRNA NA
DBSCAN-SWA_135 2133846 : 2139323 6 Acinetobacter_phage(60.0%) NA NA
DBSCAN-SWA_136 2156215 : 2160104 2 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_137 2180394 : 2180901 1 Pelagibacter_phage(100.0%) NA NA
DBSCAN-SWA_138 2188613 : 2189063 1 Rhizoctonia_fumigata_mycovirus(100.0%) NA NA
DBSCAN-SWA_139 2196064 : 2201976 6 Streptococcus_phage(66.67%) transposase NA
DBSCAN-SWA_140 2206265 : 2206817 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_141 2210660 : 2215227 3 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_142 2236351 : 2239856 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_143 2244146 : 2244647 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_144 2251315 : 2251732 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_145 2259130 : 2260066 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_146 2268479 : 2274215 4 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_147 2281156 : 2282545 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_148 2289785 : 2291487 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_149 2300233 : 2300602 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_150 2309526 : 2313908 4 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_151 2340923 : 2345971 4 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_152 2350352 : 2351312 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_153 2354455 : 2354944 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_154 2363166 : 2367045 4 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_155 2375129 : 2382760 7 Pandoravirus(33.33%) protease NA
DBSCAN-SWA_156 2397420 : 2414494 14 Hokovirus(11.11%) tRNA,transposase NA
DBSCAN-SWA_157 2417724 : 2419152 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_158 2426476 : 2427133 1 Amsacta_moorei_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_159 2433727 : 2437918 5 Synechococcus_phage(60.0%) NA NA
DBSCAN-SWA_160 2469121 : 2472693 4 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_161 2481235 : 2482483 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_162 2504322 : 2505327 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_163 2512498 : 2521759 6 Acinetobacter_phage(75.0%) NA NA
DBSCAN-SWA_164 2534302 : 2535745 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_165 2548402 : 2549410 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_166 2553899 : 2555881 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_167 2560714 : 2561746 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_168 2565354 : 2577900 11 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_169 2584222 : 2585245 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_170 2588771 : 2590190 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_171 2599715 : 2601276 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_172 2613438 : 2618145 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_173 2628921 : 2632888 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_174 2635906 : 2639531 4 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_175 2644296 : 2645766 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_176 2649514 : 2660047 9 Bacillus_virus(40.0%) tRNA NA
DBSCAN-SWA_177 2671497 : 2673657 3 Ralstonia_phage(100.0%) integrase attL 2666458:2666471|attR 2673986:2673999
DBSCAN-SWA_178 2681318 : 2681819 1 Escherichia_coli_O157_typing_phage(100.0%) NA NA
DBSCAN-SWA_179 2685903 : 2689287 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_180 2692937 : 2694432 2 Lake_Baikal_phage(50.0%) NA NA
DBSCAN-SWA_181 2703632 : 2704649 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_182 2717376 : 2718399 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_183 2723362 : 2726891 2 Burkholderia_virus(50.0%) NA NA
DBSCAN-SWA_184 2740226 : 2744778 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_185 2750969 : 2763345 12 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_186 2776420 : 2777641 1 Burkholderia_phage(100.0%) transposase NA
DBSCAN-SWA_187 2783968 : 2784574 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_188 2787716 : 2789810 2 Streptococcus_phage(50.0%) transposase NA
DBSCAN-SWA_189 2795730 : 2796702 1 Yersinia_phage(100.0%) NA NA
DBSCAN-SWA_190 2809941 : 2814501 4 Agrobacterium_phage(50.0%) NA NA
DBSCAN-SWA_191 2833260 : 2844995 12 Trichoplusia_ni_ascovirus(16.67%) protease NA
DBSCAN-SWA_192 2865741 : 2867607 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_193 2889407 : 2890202 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_194 2909653 : 2910895 1 environmental_halophage(100.0%) NA NA
DBSCAN-SWA_195 2916600 : 2918523 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_196 2927826 : 2929578 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_197 2937780 : 2939241 1 Bandra_megavirus(100.0%) NA NA
DBSCAN-SWA_198 2945356 : 2946880 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_199 2968895 : 2974117 2 Catovirus(50.0%) NA NA
DBSCAN-SWA_200 2988159 : 2989713 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_201 2998695 : 3002361 2 Indivirus(50.0%) NA NA
DBSCAN-SWA_202 3010872 : 3016866 4 Erysipelothrix_phage(50.0%) transposase NA
DBSCAN-SWA_203 3023246 : 3037233 13 Lake_Baikal_phage(28.57%) tRNA NA
DBSCAN-SWA_204 3041727 : 3045627 3 Only_Syngen_Nebraska_virus(33.33%) NA NA
DBSCAN-SWA_205 3056965 : 3057742 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_206 3061534 : 3064351 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_207 3070247 : 3073803 4 Indivirus(66.67%) tRNA NA
DBSCAN-SWA_208 3084643 : 3087790 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_209 3092019 : 3093858 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_210 3097004 : 3105944 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_211 3110439 : 3115643 5 Yellowstone_lake_phycodnavirus(33.33%) NA NA
DBSCAN-SWA_212 3118891 : 3119956 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_213 3136656 : 3140352 3 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_214 3153086 : 3154637 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_215 3164923 : 3167489 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_216 3180574 : 3183180 2 Ralstonia_phage(50.0%) NA NA
DBSCAN-SWA_217 3192548 : 3193331 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_218 3203439 : 3204084 1 Emiliania_huxleyi_virus(100.0%) NA NA
DBSCAN-SWA_219 3210193 : 3214806 4 Hokovirus(50.0%) NA NA
DBSCAN-SWA_220 3220083 : 3223951 3 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_221 3228576 : 3229173 1 Pandoravirus(100.0%) tRNA NA
DBSCAN-SWA_222 3264441 : 3265167 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_223 3270170 : 3278358 12 Burkholderia_virus(42.86%) NA NA
DBSCAN-SWA_224 3287304 : 3292003 3 Agrobacterium_phage(33.33%) protease NA
DBSCAN-SWA_225 3299439 : 3300156 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_226 3305439 : 3313937 7 Burkholderia_phage(66.67%) NA NA
DBSCAN-SWA_227 3318082 : 3318721 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_228 3323524 : 3329011 6 Acanthamoeba_polyphaga_lentillevirus(33.33%) NA NA
DBSCAN-SWA_229 3334163 : 3335342 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_230 3343647 : 3345423 1 Ostreococcus_tauri_virus(100.0%) NA NA
DBSCAN-SWA_231 3351932 : 3358424 5 Burkholderia_phage(33.33%) NA NA
DBSCAN-SWA_232 3362372 : 3363380 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_233 3376337 : 3378935 1 Cronobacter_phage(100.0%) NA NA
DBSCAN-SWA_234 3390229 : 3404595 15 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_235 3418761 : 3422892 4 Powai_lake_megavirus(50.0%) NA NA
DBSCAN-SWA_236 3426727 : 3428986 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_237 3447604 : 3448300 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_238 3451366 : 3452959 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_239 3461223 : 3463310 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_240 3475302 : 3478473 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_241 3488571 : 3489549 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_242 3513914 : 3514829 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_243 3519985 : 3520990 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_244 3551502 : 3554751 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_245 3559255 : 3563068 4 Burkholderia_virus(50.0%) NA NA
DBSCAN-SWA_246 3569945 : 3571037 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_247 3575116 : 3576237 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_248 3591922 : 3594214 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_249 3602039 : 3602645 1 Freshwater_phage(100.0%) NA NA
DBSCAN-SWA_250 3612254 : 3613577 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_251 3626968 : 3627349 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_252 3630896 : 3634914 4 Shigella_phage(50.0%) integrase NA
DBSCAN-SWA_253 3652381 : 3673018 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_254 3686181 : 3687174 1 Faustovirus(100.0%) NA NA
DBSCAN-SWA_255 3702669 : 3706892 4 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_256 3733564 : 3734926 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_257 3754634 : 3772092 3 Tupanvirus(66.67%) NA NA
DBSCAN-SWA_258 3777479 : 3778370 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_259 3786161 : 3787769 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_260 3793115 : 3794879 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_261 3803391 : 3810314 4 Leptospira_phage(50.0%) NA NA
DBSCAN-SWA_262 3825889 : 3833305 6 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_263 3839308 : 3846536 6 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_264 3849946 : 3853801 5 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_265 3865352 : 3866336 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_266 3870767 : 3871106 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_267 3880846 : 3885433 4 Rhizobium_phage(50.0%) NA NA
DBSCAN-SWA_268 3898203 : 3899976 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_269 3924387 : 3925818 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_270 3930547 : 3932011 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_271 3940927 : 3943855 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_272 3947912 : 3950601 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_273 3954725 : 3955946 1 Burkholderia_phage(100.0%) transposase NA
DBSCAN-SWA_274 3960402 : 3961587 1 Gordonia_phage(100.0%) NA NA
DBSCAN-SWA_275 3964797 : 3972218 7 Bacillus_phage(25.0%) tRNA NA
DBSCAN-SWA_276 3991489 : 3992599 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_277 4000176 : 4001148 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_278 4012655 : 4018994 3 Bacillus_phage(66.67%) tRNA NA
DBSCAN-SWA_279 4031110 : 4031911 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_280 4037757 : 4040789 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_281 4045970 : 4047527 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_282 4051207 : 4058954 5 Klosneuvirus(33.33%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP009537
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009537_1 28516-28680 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009537_2 1259515-1259607 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP009537_3 1689858-1690003 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 15622 : 119583 105 Burkholderia_virus(54.55%) capsid,protease,head,plate,holin,terminase,portal,tail NA
DBSCAN-SWA_2 631911 : 695054 48 Ostreococcus_tauri_virus(12.5%) plate,transposase NA
DBSCAN-SWA_3 1386324 : 1463335 53 Streptococcus_phage(15.38%) plate,transposase NA
DBSCAN-SWA_4 1873116 : 1938912 49 Ralstonia_phage(28.57%) plate,holin,transposase NA
DBSCAN-SWA_5 2329624 : 2340655 16 Burkholderia_virus(61.54%) integrase,transposase attL 2318080:2318096|attR 2361445:2361461
DBSCAN-SWA_6 2492210 : 2563732 55 Vibrio_phage(25.0%) plate,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage