CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	0 crisprs	DEDDh,WYL	0	0	1
NZ_CP009549	Burkholderia sp. 2002721687 chromosome I, complete sequence	1 crisprs	WYL,cas3,RT,DEDDh,csa3,DinG	0	1	7
NZ_CP009548	Burkholderia sp. 2002721687 chromosome II, complete sequence	3 crisprs	cas3,csa3,RT,DinG	2	0	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

110031 : 207220

Tupanvirus(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006029260.1\|110031_110454_+\|transposase	transposase	NA	NA	NA	NA
WP_009917397.1\|112211_113057_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_006029264.1\|113295_114534_-	MFS transporter	NA	NA	NA	NA
WP_006029265.1\|114589_115465_-	thioesterase	NA	NA	NA	NA
WP_006029266.1\|115445_116291_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_006029267.1\|116295_117888_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_006029268.1\|117900_120369_-	peptide synthase	D0R7J2	Paenibacillus_phage	1.3e-38	35.6
WP_009915096.1\|120349_123826_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	3.2e-51	27.4
WP_006029270.1\|123865_127855_-	SDR family oxidoreductase	D0R7J2	Paenibacillus_phage	7.3e-52	39.8
WP_009915097.1\|127847_132440_-	type I polyketide synthase	NA	NA	NA	NA
WP_043283262.1\|132447_137040_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.4e-67	25.2
WP_006029273.1\|137381_139304_+	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	5.8e-39	24.1
WP_009915100.1\|139857_140568_+	LuxR family transcriptional regulator	A0A1I9KF49	Aeromonas_phage	4.7e-18	28.4
WP_006029275.1\|140684_141542_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_043283265.1\|141592_142825_-	sodium:proton antiporter	NA	NA	NA	NA
WP_043283296.1\|143455_143863_+	DUF4902 domain-containing protein	NA	NA	NA	NA
WP_006029278.1\|143945_144566_+	N-acylhomoserine lactone synthase	NA	NA	NA	NA
WP_006029279.1\|144634_146152_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	3.9e-46	29.8
WP_045554675.1\|146268_147288_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_006029280.1\|147577_147823_+	acyl carrier protein	NA	NA	NA	NA
WP_004528420.1\|147988_148912_+	chlorinating enzyme	NA	NA	NA	NA
WP_009915110.1\|149002_149299_+	acyl carrier protein	NA	NA	NA	NA
WP_080595245.1\|150133_150382_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_009917079.1\|150368_150782_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_045554676.1\|151179_152733_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.1e-155	54.8
WP_045554677.1\|152763_153108_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.7e-40	69.6
WP_063840029.1\|153104_153509_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	4.2e-16	44.8
WP_051990355.1\|154076_155471_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_006029673.1\|155467_156376_-	polysaccharide deacetylase	NA	NA	NA	NA
WP_009917210.1\|156372_157245_-	polysaccharide deacetylase	NA	NA	NA	NA
WP_006029672.1\|157252_158092_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006029671.1\|158188_158992_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-33	40.3
WP_006029670.1\|158988_159882_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_006029669.1\|159875_161309_-	argininosuccinate lyase	NA	NA	NA	NA
WP_009917209.1\|161435_162314_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006029667.1\|162360_163494_-	porin	NA	NA	NA	NA
WP_043283425.1\|165430_166654_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	6.7e-49	31.1
WP_045554678.1\|167839_168640_-	thioesterase	NA	NA	NA	NA
WP_043283376.1\|168636_169551_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_006029660.1\|169618_170524_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_009916649.1\|170580_171546_-	phosphotransferase family protein	NA	NA	NA	NA
WP_006029658.1\|171542_172715_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_099975905.1\|172711_178483_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	3.2e-64	27.0
WP_082262297.1\|178479_187725_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.3e-56	19.5
WP_043283373.1\|187721_191285_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	5.0e-28	30.8
WP_006029652.1\|191281_195946_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_006029651.1\|195972_200949_-	non-ribosomal peptide synthase	A0A2K9L3I8	Tupanvirus	9.5e-41	27.6
WP_009916311.1\|202762_203575_+	helix-turn-helix transcriptional regulator	A0A291LAM3	Bordetella_phage	2.6e-12	38.0
WP_085954782.1\|205054_205865_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_043283425.1\|205996_207220_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	6.7e-49	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009549

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009549_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009549_1

2503585-2503778

Orphan

Consensus_repeat	Method
CGCAACCTCGAGCACCCCGCTCGCGCCGCTCACGAACATCGTGTCGACGGT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP009549_1

>merge|NZ_CP009549|1|2503585-2503778|PILER-CR
CCGCTCGCGCCGATCACGGCCGCCGTCGGCGGCCTGACGGGCACGCTGAGCGGCGTCGGCGGCGCAACCTCGGGCACCCCGCTCGCGCCGCTCACGAACGTCGTGTCGACGGTCACGGGTGCGCTCTCGGGCGCCGCGGGCAGCGCAGGCTCGAGCTCGCCGCTCGCGCCGCTCACGAACATCGTGTCGACGGT

>NZ_CP009549|1|1|2503585-2503778|PILER-CR
CCGCTCGCGCCGATCACGGCCGCCGTCGGCGGCCTGACGGGCACGCTGAGC	GGCGTCGGCGGCGCAACCTCGGGCACCCCGCTCGCGCCGCTCAC
GAACGTCGTGTCGACGGTCACGGGTGCGCTCTCGGGCGCCGCGGGCAGCGC	AGGCTCGAGCTCGCCGCTCGCGCCGCTCAC
GAACATCGTGTCGACGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009549.1\|WP_009912631.1\|2507493_2507955_+\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP009549.1\|WP_043282663.1\|2493575_2494595_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP009549.1\|WP_015602285.1\|2499625_2500537_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
NZ_CP009549.1\|WP_006026543.1\|2509892_2511323_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NZ_CP009549.1\|WP_043282581.1\|2496931_2498170_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|349765
NZ_CP009549.1\|WP_006026552.1\|2500624_2501092_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP009549.1\|WP_043282582.1\|2492594_2493539_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227343
NZ_CP009549.1\|WP_006026540.1\|2516019_2517846_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP009549.1\|WP_162486747.1\|2517798_2517939_+\|pyridoxal-dependent-decarboxylase	unknown	unknown	unknown
NZ_CP009549.1\|WP_043282579.1\|2511422_2512682_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP009549.1\|WP_006026544.1\|2508687_2509785_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP009549.1\|WP_009912636.1\|2512801_2515666_-\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP009549.1\|WP_006026550.1\|2501676_2501874_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NZ_CP009549.1\|WP_041861706.1\|2501088_2501595_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227295
NZ_CP009549.1\|WP_006026548.1\|2504173_2505436_+\|collagen-like-triple-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|374271
NZ_CP009549.1\|WP_006026554.1\|2498236_2499562_-\|type-II-and-III-secretion-system-protein-family-protein	unknown	unknown	gnl\|CDD\|227299
NZ_CP009549.1\|WP_006026560.1\|2492183_2492573_-\|DUF3613-domain-containing-protein	unknown	unknown	gnl\|CDD\|289069
NZ_CP009549.1\|WP_006026545.1\|2508102_2508513_-\|transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP009549.1\|WP_006026556.1\|2495587_2496928_-\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP009549.1\|WP_043282580.1\|2505585_2507265_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387

Protein	Function_ID	Function_description	E-value
NZ_CP009549.1\|WP_009912631.1\|2507493_2507955_+\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.74309e-37
NZ_CP009549.1\|WP_043282663.1\|2493575_2494595_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	3.90377e-15
NZ_CP009549.1\|WP_015602285.1\|2499625_2500537_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	1.09932e-52
NZ_CP009549.1\|WP_006026543.1\|2509892_2511323_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NZ_CP009549.1\|WP_043282581.1\|2496931_2498170_-\|fimbrial-protein	gnl\|CDD\|349765	cd03111, CpaE-like, pilus assembly ATPase CpaE. This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.	4.11239e-73
NZ_CP009549.1\|WP_006026552.1\|2500624_2501092_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	2.06223e-10
NZ_CP009549.1\|WP_043282582.1\|2492594_2493539_-\|pilus-assembly-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	2.56101e-12
NZ_CP009549.1\|WP_006026540.1\|2516019_2517846_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP009549.1\|WP_043282579.1\|2511422_2512682_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP009549.1\|WP_006026544.1\|2508687_2509785_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	3.91487e-177
NZ_CP009549.1\|WP_009912636.1\|2512801_2515666_-\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP009549.1\|WP_006026550.1\|2501676_2501874_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	5.11406e-13
NZ_CP009549.1\|WP_041861706.1\|2501088_2501595_-\|hypothetical-protein	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.86908e-13
NZ_CP009549.1\|WP_006026548.1\|2504173_2505436_+\|collagen-like-triple-helix-repeat-containing-protein	gnl\|CDD\|374271	pfam15984, Collagen_mid, Bacterial collagen, middle region. Collagen_mid is the conserved central region of bacterial collagen triple helix repeat proteins.	1.88558e-36
NZ_CP009549.1\|WP_006026554.1\|2498236_2499562_-\|type-II-and-III-secretion-system-protein-family-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	2.42088e-96
NZ_CP009549.1\|WP_006026560.1\|2492183_2492573_-\|DUF3613-domain-containing-protein	gnl\|CDD\|289069	pfam12266, DUF3613, Protein of unknown function (DUF3613). This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 126 amino acids in length.	1.81435e-13
NZ_CP009549.1\|WP_006026545.1\|2508102_2508513_-\|transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	7.6999e-25
NZ_CP009549.1\|WP_006026556.1\|2495587_2496928_-\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	2.48494e-158
NZ_CP009549.1\|WP_043282580.1\|2505585_2507265_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	3.85464e-65

>NZ_CP009549.1|WP_006026550.1|2501676_2501874_-|Flp-family-type-IVb-pilin
MKTQGTRINMKQLMHRFFKEEAGVTAIEYGLIAGLIAVAIATTVGTVGTDLSSLFSTIASKLPAA
>NZ_CP009549.1|WP_041861706.1|2501088_2501595_-|hypothetical-protein
MIRLFSIGFFFAWAAAVAIADCRNRRIPNELVFAGFAAVIIFTFCRQNPFETTLTGALVGATVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLPALPRLWIVASVAAGIHALGLMLVTRTPLGSLGRNGAPAFAFALGARRSAPYAAFLVAPAAAWLAYLIHTGGTR
>NZ_CP009549.1|WP_006026552.1|2500624_2501092_-|pilus-assembly-protein
MMRALGRFRSPRRQRGATAIEFAILFPLFFLILYGIVTYGMIFAAQQSLTLAATEGARAALNYQVAQTQAAALGLRAAAACTAANNLTGWLSGATCTTSSNYTCSYDSTMFCIQVTVTYPYAANPLVPAVALFDAVLPTTLTSRATVQINPTNII
>NZ_CP009549.1|WP_015602285.1|2499625_2500537_-|Flp-pilus-assembly-protein-CpaB
MANHLTKIIAVLLIGIAILLGLYAWVLGRKPAPVAPAAAPAAATAMVPVVVAARALPAGQPIPADALKVQQTPTPIAGAFPNPTLVTGRIPASDIVAQAPVLESELMSGLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGAEIAQTQARLLLSRVRVLSFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDVAAQTVAIRAPGGAGASNQAAAGLVLSALSGGGASAQTARAAPAPARVTAAAAPRAGGGIEVIRGGRAETVAY
>NZ_CP009549.1|WP_006026554.1|2498236_2499562_-|type-II-and-III-secretion-system-protein-family-protein
MKNKLIAWAMAFGVLLSFAAQAAEMGAIELTTGAQRQIAVGRGVQRVAIGDPNVADVLVIKGGRGGVLLVAKAAGSTSLMVWERGRDEPAVYTVDVVSGAARALLDGGAPGVRAYDGTAVVSGSAATLDAHARALAVGKGMAGKGGGVVDASTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPATPGELSEQRDGPVWRSYLGGALSPDAGPGFSK
>NZ_CP009549.1|WP_043282581.1|2496931_2498170_-|fimbrial-protein
MNARTQSLAEPAVTDYFVCASPHGEHVRWLAQTLVSAGAVESAPLEPAALAQRIAGLNPVLVFVDFSGGRAQAASAAAAAVRVSHPGLPVVALGSLGEPESALAALRAGVRDFIDFSAPAEDALRITRGLLDHVGDQPSRHGRLIALLGARAGMGASTLAANLSVLVQKRSAALGRQTALVDLGLPAGDGALFLNTRCEFDFVEAVRNLRRFDRTFVNTALARHASGVALTSLPPNLAGLRDVSYASCVGLLNRLRAFFDCQIVDLGGFSNRDFVAQTANAADESWLLCDQGVASVVSAAELLESLRDAGVDTDNVRLVVNQYDPALGLAPAQIAERLGLALAATLPSRRVPIGHAANQGKLIVDAAERDPYVRALEPLVERATGGTGAAAPRPAGGFSALRRFIQPTSKRS
>NZ_CP009549.1|WP_006026556.1|2495587_2496928_-|CpaF-family-protein
MAHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRAVAQALTKELAGFGPIEDLLADPHVEDILINGYSDVYVSKHGILTKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLANGTFNDEIGALLEAAVAARCNILVSGGTSSGKTSLLNALAFHIPEVERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMMQAMNTGHDGSMGTIHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAVDFIVQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVNADGDETDAWESLGIHPHSPKLARFRQALAGGGFGGEPYGRGGGFNV
>NZ_CP009549.1|WP_043282663.1|2493575_2494595_-|type-II-secretion-system-F-family-protein
MDPSRLGAIALVLGSIGVLMLAGLAIMQAVLARRTGRTLADALDQRAAALEAAAARAAAGAASAVGAARASAADAAPDECRPRFATLLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTRGVFLSARIACAIALPAAVALAGGETVRTHLTAWVALCVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHALTAARR
>NZ_CP009549.1|WP_043282582.1|2492594_2493539_-|pilus-assembly-protein
MRRSSFSPMTTAALAALALSLAACGAFKESGYGIGAQAERAALMQAAADRNATPDTPGMYLGLIGRMQSQGLHYASLAHIDAYEKQYGASPDTILLRADALRATDQPAASTVAYRQLLGTPLAARGYRGLGLLAGASGDFDAASQALAQASALAPTDSLTLSDLAYARMRSGDVGGARVPLMKAAELDQNNPKILSNLALFLLATGQTRDALGLMNQLKLAPAVRTEIRNDATKIAAASRARQRALARPGAPGAAAAAGMAIAANAAAGGAAGSSGEAAASRGAVAVAAAPAPVAAATAPAFEPTVPLLQRFSQ
>NZ_CP009549.1|WP_006026560.1|2492183_2492573_-|DUF3613-domain-containing-protein
MTTHDHTQTAAARSGRGRALCAATLALAAVLACAAGAARAQSSQPQPQHDAPPASEIGHASQTWFALQASNREAAPAQPMIGEAASLAYARYLESFKTKIPAFYGSAAGMSGGGGGGADYLLTPASRSQ
>NZ_CP009549.1|WP_006026548.1|2504173_2505436_+|collagen-like-triple-helix-repeat-containing-protein
MNQQRFVPSFALAAWRVPLTALATACVLAACGGSDVTAPPSAGGGTSGTSGTSGTSGTSGTSGTAGTSGVVNTLGKTATDLGNTIGSTSVPGLGSGVTQGVGATVGSTGGIVNAAADALSNGLGQIGSTQNPVGTTVAGLGNVVSAASNTVQGLSQTVQALGTGPLAPLSPVTTPVAGALATAANGVNAAGTMLGNALSTGPVQQITQPISSAVTPLVITAGQVTQTVGTTTGVGQPVSGLLQQVGGAISSAGKQIAGTSPSQPLVGDVGQLVSAVGNTVTNAGGLVNPAAPNGAAPIPGLITSLVGGSTATVATGSGTSSGSTLGSPLSGLLSSLGGGALPTGSLGGSAVSGGASNPLAPITSLASGGTSAGANPLAPVTGLLNPLTGTLSGSTSSTGGATGLLAPVTGTLGTLGSFGK
>NZ_CP009549.1|WP_043282580.1|2505585_2507265_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MKSRHDSWMLLLALVAAAGAAHAQSRSGGNPLEALPQINTPSKPSVTVQVAPQEVQVQALLARHLTPTSFQVEGVKSIPFEEISQRFTPLVGKDITIGQLIETANGVTKLYQERGYALSFAFVPAQTFEGGVVRVTVVEGYVANLKITGRPGAMEPKVRAIAAHIMDDRPLRRATFERYVNTFGLLPGVTVKANVPPPQNTDGATTLELNVDRKPINVSAGLNTNNPGVQGLFTVTENGLTSLGEQMSISALFPKGPNNQTYVSFSGAVPIGSNGLVTRLDASHYRGNPSVDQTVLPNVQRTVINDKLGLSASYPLMLSNQRSLLGTVSGYASHNEDRYQNRSTGAMIGLRSQVRVLQMQLDYTSVQPKQVQKLSFNVAKAFDILGASKSGFTNLPGVTTTNPASTTFVRTGATFAQTNEWPFKIGSTVQLTGQYSPDSLPTTEQISFGAQRFALGYQPGETSGDSGWGASFELNRAFTPGFTYLKNITPYIAYDMARVYLHSGTPVPRRLSSVGLGVRLTDSRFYNLDVSIAKPVGDAPIESASRSPRVNASFSYQLY
>NZ_CP009549.1|WP_009912631.1|2507493_2507955_+|DUF2147-domain-containing-protein
MFQMTRSLRSITVAGALLACAASAFAQADSPIGTWQTIDDHTGKPKALVQITADSAGELSGKVLKGLGENDTPDRRCTACTDERKDQLIKGMTIIKAMKKDGEGWDGGNILDPENGKVYKCKMKLEEGGQKLIVRGYIGVSLLGRSQTWMRAQ
>NZ_CP009549.1|WP_006026545.1|2508102_2508513_-|transposase
MTPYRDITDEEWQRVAPLLPELRPRKELRGRPLADTRAVLNGVLWVIYSGANWSAMPRRFPAYQTCHRRFKAWHESGALKRVLVELFGTQSDDLCELMAMRMRTHARSKAAQARSGAASTATSPAPRHEHSLEHVA
>NZ_CP009549.1|WP_006026544.1|2508687_2509785_-|cell-division-protein-ZapE
MNVTEYYEHELKTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVIRPDLPRGVYMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMTSNYDPDDLYPDGLHRDRMLPAIALLKERLDVLNVDAGVDYRQRTLTQVRMYHTPLGAQADRELRHAFAQLAAVPDENPILHIEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSAAVAADDLYVEGPMANEFSRTVSRIVEMQSKEYLEAPRRLIDTSLT
>NZ_CP009549.1|WP_006026543.1|2509892_2511323_-|dihydrolipoyl-dehydrogenase
MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACIEKWKNPAGALKLGGTCLNVGCIPSKALLASSEEFENAQHHLADHGISVDGVKMDVAKMLARKDGIVEKMTGGIEFLFKKNKITWLKGHGKFTGKTDAGVTIEVSGEGETEVVTAKNVIIATGSKARHLPNVPVDNKIVADNEGALTFDTVPKKLAVIGAGVIGLELGSVWRRLGAEVTVLEALPAFLGAADEALAKEAAKLFKKQGLDIHLGVKIDEVKTGANGVSIAYTDKDGNAKTLDADRLIVSVGRVPNTENLGLEAIGLKANERGFIDVDDHCRTAVTNVYAIGDVVRGPMLAHKAEDEGVLVAEVIDGQKPHIDYNCIPWVIYTYPEIAWVGKTEQQLKAEGREIKSGRFPFSINGRALGMNAPDGFVKMIADVKTDELLGVHVIAANASDLIAEAVVAMEFKAASEDVARICHPHPSMSEVMREAALAVDKRSLNS
>NZ_CP009549.1|WP_043282579.1|2511422_2512682_-|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MAIVEVKVPQLSESVSEATMLQWKKKPGEAVAQDEILIELETDKVVLEVPAPAAGVLAQVLQNDGDTVVADQVIATIDTEAKAGAAEAAAGAAEVKPAAAPAAAPAPAAQPAAAAASPAASKLMAEKGIGAADVAGSGRDGRITKGDVLSAGSAPKAAAAPAQALAAAKPSLPEVKVPASATTWLNDRPEQRVPMSRLRARIAERLLESQQTNAILTTFNEVNMQPVMDLRAKYKDKFEKEHGVKLGFMSFFVKAAVHALKKFPLVNASIDGNDIVYHGYFDIGIAVGSPRGLVVPILRNADQMSLADIEKKIAEFGQKAKDGKLSIEEMTGGTFSISNGGVFGSMLSTPIINPPQSAILGVHATKERPVVENGQIVIRPINYLALSYDHRIIDGREAVLSLVAMKDALEDPARLLLDL
>NZ_CP009549.1|WP_009912636.1|2512801_2515666_-|2-oxoglutarate-dehydrogenase-E1-component
MSDVMKQFQLNSYLFGGNASYVEELYEAYLDNPASVPDNWREYFDALQNVPATDGSSASDVAHNPIVESFAQRAKANAFIPRESGGNLATARKQVHVQSLISAYRFLGSQWANLDPLKRRERPAIPELEPAFYDFSEADLDQTFSASNLYFGFEQASLRDIVKGLRDTYCGTIGVEFMYISDPEQKRWWQERLESSRATPNFSADKKKHILNRLTAAEGLERYLHTKYVGQKRFSLEGGESFIASMDEVVQRAGSKGVQEIVIGMAHRGRLNVLVNTLGKMPADLFAEFEGKHVDDLPAGDVKYHKGFSSDIATEGGPVHLSLAFNPSHLEIVNPVVEGSAKARMDRRGDADGLQVLPVQIHGDAAFAGQGVVMETLNLAQTRGYGTHGTLHIVINNQIGFTTSDPRDARSTLYCTDVVKMIEAPVLHVNGDDPEAVVLATQIAIDYRMQFHKDVVIDIVCFRKLGHNEQDTPAVTQPLMYKKIAQHPGTRALYAEKLAQQGVISAEDADGFVKAYRKAMDDGHHTVDPVLSNYKSKYAVDWMPFLNRKWTDAADTAVPLAELKRLGERITTVPQNFKVHPLVERVINDRRNMARGDQPLDWGMGEHLAYASLVASGYAVRLTGQDSGRGTFTHRHAVLHDQNRERWNDGTYVPLQNISEGQAKFNVIDSVLSEEAVLGFEYGYSTAEPNTLVLWEAQFGDFANGAQVVIDQFISSGEVKWGRVSGLTMLLPHGYEGQGPEHSSARIERYLQLCAEHNMQVVQPTTPAQIFHLLRRQMIRLFRKPLIVATPKSLLRHKEAVSDLSELAKGSFQPVLGEVDGGIDAKKVKRVIACSGRVYYDLVAHRREAKANDAAIVRIEQLYPFAHKQFEAEMKKYENATEVVWVQDEPQNQGPWFYVEHHLKEGMKEGQKLAYSGRPASASPAVGYYAKHYEQQKALIEGAFGRLKSASVAK
>NZ_CP009549.1|WP_006026540.1|2516019_2517846_-|translational-GTPase-TypA
MTRALRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVAERVMDSNDIEKERGITILAKNCAVEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLKPIVVVNKVDRPGARIDWVINQTFDLFDKLGATEEQLDFPVVYASGLNGYASLDPAARDGDMRPLFEAILQHVPVRPADPEAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGQPVVMRFGPEGEVLNRKINQVLSFKGLERVQVESAEAGDIVLINGIEDVGIGATICAVEAPEALPMITVDEPTLTMNFLVNSSPLAGREGKFVTSRQIRDRLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRREGYELAVSRPRVVMQEVDGVKHEPYELLTVDLEDEHQGGVMEELGRRKGEMLDMVSDGRGRTRLEYRIPARGLIGFQSEFLTLTRGTGLMSHIFDSYAPVREGSVGERRNGVLISQDDGAAVAYALWKLQDRGRMFVKPGDALYEGMIIGIHSRDNDLVVNPIKGKQLTNVRASGTDEAVRLVPPIQMSLEYAVEFIDDDELVEVTPQSIRLRKRHLKEHERRRASREAEAG
>NZ_CP009549.1|WP_162486747.1|2517798_2517939_+|pyridoxal-dependent-decarboxylase
MVDVGDDGDVAKGAGHRNLKTDGTRKRARTVLPDARAICSLESLKL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	KT221034	Streptomyces phage SF3, complete genome	17567-17596	6	0.8
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	KT221033	Streptomyces phage SF1, complete genome	35267-35296	6	0.8
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1318119-1318148	6	0.8
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	786403-786432	6	0.8
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	466158-466187	6	0.8
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	232270-232299	7	0.767
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	NC_015724	Cupriavidus necator N-1 plasmid pBB2, complete sequence	158018-158047	7	0.767
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	MH727550	Corynebacterium phage Juicebox, complete genome	16187-16216	7	0.767
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	119078-119107	8	0.733
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	119078-119107	8	0.733
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	121970-121999	8	0.733
NZ_CP009549_1	1.2\|2503731\|30\|NZ_CP009549\|PILER-CR	2503731-2503760	30	NZ_CP021004	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pE, complete sequence	33294-33323	8	0.733

1. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to KT221034 (Streptomyces phage SF3, complete genome) position: , mismatch: 6, identity: 0.8

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gcggggcgcgctctcgcgcgccgcgggcgg	Protospacer
   ***.********* ***********.*

2. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to KT221033 (Streptomyces phage SF1, complete genome) position: , mismatch: 6, identity: 0.8

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gcggggcgcgctctcgcgcgccgcgggcgg	Protospacer
   ***.********* ***********.*

3. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
cacgggtgcgctcgcgggcgccaagtgcga	Protospacer
************* ********. * **..

4. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.8

-cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
ctacctgt-cgctctcgcgcgccgcgggcac	Protospacer
 .**  ** ******** ************

5. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 6, identity: 0.8

cacgggtgcgctctcgggcgccg---cgggcag	CRISPR spacer
gacggctgcgctctcgggcgccatctcggg---	Protospacer
 **** ****************.   ****

6. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 7, identity: 0.767

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gccgccggcgctctccggcgccgccggcag	Protospacer
  **   ******** ******** *****

7. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to NC_015724 (Cupriavidus necator N-1 plasmid pBB2, complete sequence) position: , mismatch: 7, identity: 0.767

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gccgcccgcgctctccggcgccgccggcag	Protospacer
  **  .******** ******** *****

8. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to MH727550 (Corynebacterium phage Juicebox, complete genome) position: , mismatch: 7, identity: 0.767

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gaaggccgcggtctcgggcgccgcgggccc	Protospacer
 * ** .*** *****************

9. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.733

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
cgcgggtgcggtctcggtcgccgcgtcggt	Protospacer
*.******** ****** *******   .

10. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.733

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
cgcgggtgcggtctcggtcgccgcgtcggt	Protospacer
*.******** ****** *******   .

11. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.733

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
cgcgggtgcggtctcggtcgccgcgtcggt	Protospacer
*.******** ****** *******   .

12. spacer 1.2|2503731|30|NZ_CP009549|PILER-CR matches to NZ_CP021004 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pE, complete sequence) position: , mismatch: 8, identity: 0.733

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
taagggtgcgctctcggccgctgcggtggc	Protospacer
.* ************** ***.****  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

320551 : 329549

Ralstonia_phage(37.5%)

integrase

attL 308100:308115|attR 333847:333862

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
308100:308115	attL	NA	NA	NA	NA
WP_009913961.1\|320551_321475_+	AAA family ATPase	E5F074	Ralstonia_phage	4.0e-30	36.5
WP_043281864.1\|321471_322842_+	type II secretory pathway protein	NA	NA	NA	NA
WP_009913959.1\|322941_323523_+	hypothetical protein	A0A0K2QQ53	Ralstonia_phage	5.5e-09	53.1
WP_043281862.1\|323967_324747_+	hypothetical protein	A0A1W5LU59	Ralstonia_phage	2.7e-35	41.1
WP_045554880.1\|324957_325701_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	4.2e-54	48.7
WP_009913956.1\|325741_326074_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	3.7e-18	51.9
WP_009913954.1\|326081_326399_+	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	1.1e-14	55.7
WP_158354520.1\|326442_327324_+	DUF4935 domain-containing protein	A4PE40	Ralstonia_virus	3.8e-46	42.4
WP_009913949.1\|328316_328550_+	hypothetical protein	NA	NA	NA	NA
WP_043281860.1\|328787_329549_+	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	2.3e-100	75.1
333847:333862	attR	NA	NA	NA	NA

DBSCAN-SWA_2

937821 : 947006

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009913494.1\|937821_939771_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.0e-147	50.3
WP_006025367.1\|940034_941168_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	9.1e-24	38.2
WP_009913491.1\|941199_943161_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	3.8e-54	32.3
WP_006025369.1\|943327_944143_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	9.7e-36	32.1
WP_006025370.1\|944207_944891_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	3.3e-05	26.0
WP_006025371.1\|944887_945415_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_006025372.1\|945452_947006_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2

DBSCAN-SWA_3

1279006 : 1314681

Ralstonia_phage(37.14%)

integrase,capsid,head,transposase,tail,plate

attL 1308506:1308522|attR 1321407:1321423

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009913260.1\|1279006_1279801_-	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	1.5e-102	65.5
WP_009913259.1\|1279950_1280343_-	hypothetical protein	A0A1S5NV54	Burkholderia_phage	1.9e-13	37.5
WP_006025663.1\|1281515_1282088_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_006025664.1\|1282084_1283152_-\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	2.1e-67	42.7
WP_006025665.1\|1283151_1283502_-	hypothetical protein	A0A2H4JDR8	uncultured_Caudovirales_phage	2.3e-26	56.5
WP_006025666.1\|1283567_1284170_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	1.3e-37	42.4
WP_009916826.1\|1284166_1285291_-\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	4.1e-77	42.3
WP_006025668.1\|1285274_1286585_-	DMT family permease	A0A2H4JGT4	uncultured_Caudovirales_phage	1.0e-42	29.4
WP_006025669.1\|1286586_1288839_-\|tail	tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	9.5e-57	30.3
WP_006025670.1\|1288969_1289368_-	hypothetical protein	NA	NA	NA	NA
WP_006025671.1\|1289364_1289742_-	hypothetical protein	A0A0M3LRV6	Mannheimia_phage	1.3e-22	42.5
WP_006025672.1\|1289771_1291193_-\|tail	tail sheath protein	B7SDP8	Haemophilus_phage	5.5e-103	48.0
WP_006025673.1\|1291196_1291424_-	DUF2635 domain-containing protein	A0A0M3LQM9	Mannheimia_phage	1.9e-05	56.5
WP_006025674.1\|1291420_1292089_-	DUF1834 family protein	NA	NA	NA	NA
WP_006025675.1\|1292093_1292507_-	DUF1320 domain-containing protein	A0A2P9JZJ4	Alteromonadaceae_phage	1.5e-13	40.4
WP_006025676.1\|1292513_1293047_-	hypothetical protein	NA	NA	NA	NA
WP_006025677.1\|1293165_1294059_-\|head	head protein	A0A0M4UKB9	Ralstonia_phage	7.0e-112	64.3
WP_006025678.1\|1294101_1294512_-	hypothetical protein	A0A0M4TU84	Ralstonia_phage	1.2e-29	53.7
WP_006025679.1\|1294578_1295688_-	hypothetical protein	A0A0M5N0Q6	Ralstonia_phage	2.3e-72	47.4
WP_006025680.1\|1295887_1296472_-	phage virion morphogenesis protein	B7SDZ4	Pseudomonas_virus	7.2e-09	39.3
WP_006025681.1\|1296575_1297889_-\|capsid	minor capsid protein	Q6QIB9	Burkholderia_phage	4.8e-61	47.3
WP_006025682.1\|1297878_1299450_-	DUF935 domain-containing protein	A0A0M5MS00	Ralstonia_phage	2.2e-145	52.1
WP_006025683.1\|1299479_1301264_-	hypothetical protein	A0A0M4U7A1	Ralstonia_phage	2.1e-253	73.7
WP_006025684.1\|1301265_1301463_-	hypothetical protein	NA	NA	NA	NA
WP_043282361.1\|1301475_1301973_-	DUF1804 family protein	A0A0A1IX73	Pseudomonas_phage	2.6e-55	67.5
WP_006025686.1\|1301976_1302186_-	hypothetical protein	NA	NA	NA	NA
WP_006025687.1\|1302182_1302452_-	hypothetical protein	NA	NA	NA	NA
WP_006025688.1\|1302475_1302709_-	conjugal transfer protein TraR	A0A0M4UVB2	Ralstonia_phage	7.8e-07	45.3
WP_006025689.1\|1302709_1303330_-	hypothetical protein	Q6QIC6	Burkholderia_phage	7.2e-07	32.3
WP_006025690.1\|1303310_1303556_-	hypothetical protein	A0A0M4UKB4	Ralstonia_phage	1.2e-10	44.3
WP_006025691.1\|1303574_1304096_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	2.1e-36	53.4
WP_006025692.1\|1304235_1304670_-\|transposase	transposase	A0A0A1IWZ1	Pseudomonas_phage	5.2e-20	40.7
WP_006025693.1\|1304666_1305077_-	regulatory protein GemA	A0A0M5MRZ7	Ralstonia_phage	1.7e-25	44.5
WP_006025694.1\|1305143_1305842_-	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	1.2e-31	37.8
WP_006025695.1\|1305854_1306115_-	hypothetical protein	NA	NA	NA	NA
WP_006025696.1\|1306117_1306735_-	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	6.6e-61	53.5
WP_009916815.1\|1306768_1307074_-	hypothetical protein	NA	NA	NA	NA
WP_009916814.1\|1307070_1307508_-	hypothetical protein	NA	NA	NA	NA
WP_009916813.1\|1307519_1307837_-	hypothetical protein	NA	NA	NA	NA
WP_009916811.1\|1307891_1308197_-	hypothetical protein	NA	NA	NA	NA
WP_006025700.1\|1308196_1308556_-	hypothetical protein	NA	NA	NA	NA
1308506:1308522	attL	NA	NA	NA	NA
WP_006025701.1\|1308548_1309184_-	hypothetical protein	L7P7I3	Pseudomonas_phage	1.3e-24	36.8
WP_006025702.1\|1309173_1309476_-	hypothetical protein	NA	NA	NA	NA
WP_099975908.1\|1309475_1310108_-	ATP-binding protein	A0A0M4UT94	Ralstonia_phage	9.5e-55	66.9
WP_009916808.1\|1310253_1312512_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M4U788	Ralstonia_phage	9.9e-147	59.0
WP_006025705.1\|1312511_1312985_-	hypothetical protein	A0A0M3VI79	Ralstonia_phage	5.4e-47	58.7
WP_080595004.1\|1313028_1313385_-	transcriptional regulator	A0A0M4UV99	Ralstonia_phage	1.3e-24	61.1
WP_059213559.1\|1313576_1314029_+	helix-turn-helix transcriptional regulator	Q5ZQZ8	Pseudomonas_phage	6.4e-05	43.8
WP_009916804.1\|1314042_1314681_+	hypothetical protein	A0A0M4UKA3	Ralstonia_phage	1.9e-31	47.9
1321407:1321423	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1331086 : 1339519

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006025719.1\|1331086_1332487_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.2e-78	38.3
WP_015601685.1\|1332518_1333442_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	5.7e-16	27.5
WP_006025721.1\|1333500_1334493_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	1.0e-26	30.6
WP_006025722.1\|1334564_1334882_+	competence protein ComE	NA	NA	NA	NA
WP_009916396.1\|1335220_1336123_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	2.3e-54	40.2
WP_006025724.1\|1336218_1337454_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_006025725.1\|1337632_1338556_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.4e-43	35.9
WP_080595006.1\|1338676_1339519_-	alpha/beta hydrolase	A7XCB7	Tanapox_virus	3.2e-18	27.1

DBSCAN-SWA_5

2631282 : 2722326

Ralstonia_phage(50.0%)

integrase,head,transposase,terminase,tail,tRNA,coat

attL 2655019:2655037|attR 2719041:2719059

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006026452.1\|2631282_2633907_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.9e-80	39.6
WP_045554854.1\|2634145_2635261_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_043282559.1\|2635640_2636861_+	CoA transferase	NA	NA	NA	NA
WP_006026449.1\|2637055_2637862_+	hypothetical protein	NA	NA	NA	NA
WP_041861885.1\|2638187_2638397_-	ornithine acetyltransferase	NA	NA	NA	NA
WP_006026447.1\|2638677_2640387_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	1.4e-185	56.9
WP_006026446.1\|2640420_2640903_-	NUDIX hydrolase	A0A0G2SS60	Proteus_phage	2.6e-20	41.2
WP_009912747.1\|2640921_2641308_-	hypothetical protein	NA	NA	NA	NA
WP_006026444.1\|2641509_2643609_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_043282558.1\|2643710_2644571_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_043282556.1\|2644613_2645987_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_006026441.1\|2646220_2647804_+	acid phosphatase	NA	NA	NA	NA
WP_006026440.1\|2647977_2649171_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_009912761.1\|2649214_2649847_-	response regulator transcription factor	NA	NA	NA	NA
WP_043282555.1\|2649847_2651920_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	9.1e-30	26.8
WP_006026437.1\|2652010_2652334_+	hypothetical protein	NA	NA	NA	NA
WP_006026436.1\|2652330_2653296_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_006026435.1\|2653311_2655723_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
2655019:2655037	attL	NA	NA	NA	NA
WP_043282554.1\|2655767_2656604_-	molecular chaperone	NA	NA	NA	NA
WP_006026433.1\|2656621_2657146_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_006026432.1\|2657228_2657789_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_043282658.1\|2657841_2658387_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009912775.1\|2659187_2660081_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_080595033.1\|2660506_2661778_+	MFS transporter	NA	NA	NA	NA
WP_006026428.1\|2661831_2662758_+	amidohydrolase family protein	NA	NA	NA	NA
WP_009917351.1\|2663250_2663532_+	H-NS histone family protein	NA	NA	NA	NA
WP_009917353.1\|2663739_2664042_-	hypothetical protein	NA	NA	NA	NA
WP_006026424.1\|2664486_2665143_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_006026423.1\|2665167_2666118_-	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	4.2e-06	36.1
WP_006026422.1\|2666260_2667109_+	hypothetical protein	NA	NA	NA	NA
WP_006026421.1\|2667137_2668298_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_006026420.1\|2668310_2669489_+	CoA transferase	NA	NA	NA	NA
WP_006026418.1\|2670869_2671709_-	CoA ester lyase	NA	NA	NA	NA
WP_006026417.1\|2671784_2672051_-	hypothetical protein	NA	NA	NA	NA
WP_006026416.1\|2672282_2673596_-	divalent metal cation transporter	NA	NA	NA	NA
WP_156436722.1\|2673953_2674502_+	hypothetical protein	NA	NA	NA	NA
WP_156436723.1\|2674513_2674879_+	hypothetical protein	NA	NA	NA	NA
WP_006026414.1\|2675467_2676946_+	PHB depolymerase family esterase	NA	NA	NA	NA
WP_009916596.1\|2677041_2678598_-	MCE family protein	NA	NA	NA	NA
WP_041861722.1\|2678820_2679054_-	hypothetical protein	NA	NA	NA	NA
WP_006026412.1\|2679120_2679783_-	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_006026411.1\|2680019_2680601_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_006026410.1\|2680779_2681115_+	hypothetical protein	NA	NA	NA	NA
WP_009916599.1\|2681717_2682056_-	H-NS histone family protein	NA	NA	NA	NA
WP_009916600.1\|2682348_2683635_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.3e-171	71.7
WP_006026409.1\|2683767_2684673_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.3e-131	76.4
WP_006026408.1\|2685755_2686775_+\|integrase	site-specific integrase	A0A0A1I5U0	Burkholderia_phage	1.6e-48	38.0
WP_006026407.1\|2686831_2687851_+\|integrase	site-specific integrase	A0A1L7DQ84	Ralstonia_phage	4.9e-77	48.1
WP_009916602.1\|2687969_2688305_-	hypothetical protein	NA	NA	NA	NA
WP_009916603.1\|2688301_2688757_-	lysozyme	A0A1S6L191	Ralstonia_phage	5.6e-33	52.6
WP_006026405.1\|2688756_2688975_-	hypothetical protein	NA	NA	NA	NA
WP_006026404.1\|2688978_2690775_-\|terminase	phage terminase large subunit	A0A1L7DQE6	Ralstonia_phage	4.0e-276	77.3
WP_006026403.1\|2690764_2691079_-	hypothetical protein	A0A1S6L1A7	Ralstonia_phage	6.0e-10	45.3
WP_043282551.1\|2691075_2691264_-	hypothetical protein	NA	NA	NA	NA
WP_080595031.1\|2691273_2691678_-	hypothetical protein	A0A1S5NV54	Burkholderia_phage	8.8e-14	33.8
WP_006026402.1\|2691677_2693243_-	hypothetical protein	A0A1S6L1B3	Ralstonia_phage	5.2e-38	50.0
WP_006026401.1\|2693323_2698225_-	transglycosylase SLT domain-containing protein	A0A1L7DQA5	Ralstonia_phage	4.8e-239	37.0
WP_006026400.1\|2698292_2700398_-	hypothetical protein	A0A0A1I5M8	Burkholderia_phage	3.7e-79	33.1
WP_009916605.1\|2700587_2701493_-	hypothetical protein	B5BTX1	Ralstonia_phage	7.3e-16	37.3
WP_009916606.1\|2701492_2704054_-	hypothetical protein	A0A0A1I627	Burkholderia_phage	2.7e-249	50.8
WP_080595030.1\|2704053_2704665_-\|tail	phage tail protein	A0A0A1I5V9	Burkholderia_phage	6.3e-48	47.3
WP_006026396.1\|2704723_2705737_-	hypothetical protein	A0A1L7DQF3	Ralstonia_phage	9.0e-132	70.2
WP_009916609.1\|2705877_2706732_-	hypothetical protein	A0A0A1I5M7	Burkholderia_phage	4.0e-48	52.0
WP_009916610.1\|2706738_2708298_-\|head,tail	head-tail joining protein	A0A1L7DQD6	Ralstonia_phage	2.4e-176	63.3
WP_009916611.1\|2708297_2708741_-	hypothetical protein	NA	NA	NA	NA
WP_009916612.1\|2708750_2709353_-	hypothetical protein	NA	NA	NA	NA
WP_006026391.1\|2709353_2709785_-	hypothetical protein	NA	NA	NA	NA
WP_009916614.1\|2709792_2709963_-	hypothetical protein	A0A1S6L1E2	Ralstonia_phage	2.1e-09	56.9
WP_006026390.1\|2710039_2712496_-	DNA-directed RNA polymerase	A0A0A8KWP2	Burkholderia_phage	1.0e-274	57.5
WP_006026389.1\|2712495_2713419_-	hypothetical protein	A0A0A1I650	Burkholderia_phage	1.9e-67	46.4
WP_009916616.1\|2713432_2714143_-	hypothetical protein	A0A0A1I625	Burkholderia_phage	4.2e-35	44.0
WP_006026387.1\|2714135_2714363_-	hypothetical protein	A0A1S6L1D4	Ralstonia_phage	2.6e-15	57.0
WP_009916617.1\|2714362_2715565_-	hypothetical protein	F1ADQ5	Caulobacter_phage	2.5e-120	56.3
WP_009916618.1\|2715564_2715966_-	hypothetical protein	A0A1L7DQG2	Ralstonia_phage	1.3e-17	48.0
WP_009916619.1\|2715943_2716891_-	hypothetical protein	A0A1L7DQH5	Ralstonia_phage	3.1e-78	53.2
WP_144411943.1\|2716890_2717811_-	hypothetical protein	A0A1L7DQE1	Ralstonia_phage	5.2e-70	55.0
WP_099975903.1\|2717822_2720270_-	DNA polymerase A family protein	A0A1L7DQB7	Ralstonia_phage	7.2e-284	63.0
2719041:2719059	attR	NA	NA	NA	NA
WP_006026384.1\|2720272_2721487_-	AAA family ATPase	A0A1S6L1C9	Ralstonia_phage	1.8e-150	65.0
WP_009916623.1\|2721519_2722326_-	DNA primase	A0A1L7DQD5	Ralstonia_phage	3.7e-64	47.8

DBSCAN-SWA_6

2832374 : 2886039

Burkholderia_phage(20.0%)

integrase,transposase,tRNA,protease

attL 2857600:2857623|attR 2884487:2884510

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045554907.1\|2832374_2833559_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	2.2e-214	93.0
WP_006026271.1\|2833630_2833804_-	hypothetical protein	NA	NA	NA	NA
WP_006026269.1\|2834104_2836051_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_006026268.1\|2836274_2836487_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_006026267.1\|2836738_2836963_+	hypothetical protein	NA	NA	NA	NA
WP_006026266.1\|2837107_2838040_+	DMT family transporter	NA	NA	NA	NA
WP_006026264.1\|2838526_2839819_+	EAL domain-containing protein	NA	NA	NA	NA
WP_006026263.1\|2840096_2840501_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_043282531.1\|2840497_2843170_-	AAA family ATPase	A0A1P8DII4	Virus_Rctr197k	8.2e-15	36.3
WP_006026261.1\|2843166_2846979_-	exodeoxyribonuclease V subunit beta	G3MA40	Bacillus_virus	4.7e-08	29.4
WP_006026260.1\|2846975_2850320_-	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
WP_006026259.1\|2850582_2852877_+	membrane protein	NA	NA	NA	NA
WP_009911841.1\|2852873_2853065_+	hypothetical protein	NA	NA	NA	NA
WP_006026258.1\|2853061_2854426_+	amino acid permease	NA	NA	NA	NA
WP_006026256.1\|2854970_2856008_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006026255.1\|2855997_2857674_+	iron ABC transporter permease	NA	NA	NA	NA
2857600:2857623	attL	NA	NA	NA	NA
WP_006026254.1\|2857684_2858455_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.8
WP_009892050.1\|2858493_2858961_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_006026252.1\|2859105_2859735_+	cysteine dioxygenase	NA	NA	NA	NA
WP_006026251.1\|2860222_2861140_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_009911821.1\|2861201_2861843_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_009911820.1\|2861981_2862443_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_006026248.1\|2862532_2862988_-	hypothetical protein	NA	NA	NA	NA
WP_009916732.1\|2863308_2865249_+	DUF839 domain-containing protein	NA	NA	NA	NA
WP_080595023.1\|2865914_2867300_-	hypothetical protein	NA	NA	NA	NA
WP_158354529.1\|2867301_2869023_-	hypothetical protein	NA	NA	NA	NA
WP_006026245.1\|2869094_2870636_-	ATP-binding protein	NA	NA	NA	NA
WP_043282527.1\|2870645_2873069_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_080595022.1\|2873099_2873927_-\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_144411946.1\|2874203_2874800_-	hypothetical protein	NA	NA	NA	NA
WP_006026243.1\|2875130_2876408_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.5e-102	49.4
WP_009916975.1\|2878243_2879278_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_006026240.1\|2879788_2881297_-	Fic family protein	NA	NA	NA	NA
WP_009916973.1\|2884677_2886039_-\|protease	Zn-dependent protease	NA	NA	NA	NA
2884487:2884510	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3392545 : 3403452

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006024809.1\|3392545_3394846_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.3e-167	42.2
WP_006024808.1\|3394842_3395157_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	1.2e-13	45.8
WP_004196460.1\|3395686_3395890_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_043282172.1\|3396013_3397612_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_006024806.1\|3397782_3399042_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	8.9e-12	63.0
WP_006024805.1\|3399306_3399885_+	pseudouridine synthase	NA	NA	NA	NA
WP_080594897.1\|3400145_3400361_+	hypothetical protein	NA	NA	NA	NA
WP_043282056.1\|3400553_3401063_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	3.2e-13	40.2
WP_006024803.1\|3401337_3403452_+	elongation factor G	E4ZFJ7	Streptococcus_phage	1.5e-56	26.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009548

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009548_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009548_1

1211110-1211364

Orphan

Consensus_repeat	Method
GAGNAAGCGCTGAAGCGCTAACTC	CRT

5 spacers

The CRISPR arrays of NZ_CP009548_1

>merge|NZ_CP009548|1|1211110-1211364|CRT
GAGTAAGCGCTGAAGCGCCAGCTCTGGTCAACCACGGCATGGGATCGGAGCAAGCGCTGAAGCGCTAACTGCGGTCGACCGCCGAGGGACCAGAGTAAGCGCTGAAGCGCTAACTCTGGTCAACCACGGCATGGGATCGGAGCAAGCGCTGAAGCGCTAACTCCGATCGACCGCCGAGGGACCAGAGTAAGCGCTGAAGCGCTAACTCTGGTCAACCACGGCATGGGATCGGAGTAAGCGCTGAAGCGCTAACTC

>NZ_CP009548|1|1|1211110-1211364|CRT
GAGTAAGCGCTGAAGCGCCAGCTC	TGGTCAACCACGGCATGGGATCG
GAGCAAGCGCTGAAGCGCTAACTG	CGGTCGACCGCCGAGGGACCA
GAGTAAGCGCTGAAGCGCTAACTC	TGGTCAACCACGGCATGGGATCG
GAGCAAGCGCTGAAGCGCTAACTC	CGATCGACCGCCGAGGGACCA
GAGTAAGCGCTGAAGCGCTAACTC	TGGTCAACCACGGCATGGGATCG
GAGTAAGCGCTGAAGCGCTAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009548.1\|WP_015603854.1\|1204058_1204349_-\|muconolactone-Delta-isomerase	unknown	unknown	gnl\|CDD\|213786
NZ_CP009548.1\|WP_006028011.1\|1211383_1212661_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|176889
NZ_CP009548.1\|WP_041862155.1\|1208963_1209989_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|373110
NZ_CP009548.1\|WP_006028007.1\|1214961_1215378_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|238608
NZ_CP009548.1\|WP_006028020.1\|1201063_1203070_+\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
NZ_CP009548.1\|WP_043283007.1\|1217215_1217749_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009548.1\|WP_006028019.1\|1203069_1203678_+\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131889
NZ_CP009548.1\|WP_043283008.1\|1215414_1217043_-\|phospholipase-D-family-protein	unknown	unknown	gnl\|CDD\|197212
NZ_CP009548.1\|WP_045554718.1\|1204638_1205658_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP009548.1\|WP_009915779.1\|1217777_1219064_+\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|377281
NZ_CP009548.1\|WP_006028015.1\|1205816_1206719_-\|catechol-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|239543
NZ_CP009548.1\|WP_006028008.1\|1213509_1214754_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP009548.1\|WP_006028010.1\|1212675_1213173_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-beta	unknown	unknown	gnl\|CDD\|238357
NZ_CP009548.1\|WP_085954781.1\|1210171_1210989_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP009548.1\|WP_006028002.1\|1221100_1222741_+\|acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236239
NZ_CP009548.1\|WP_009915778.1\|1219226_1220807_+\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP009548.1\|WP_006028018.1\|1203678_1204011_+\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
NZ_CP009548.1\|WP_006028013.1\|1208003_1208891_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176136
NZ_CP009548.1\|WP_006028009.1\|1213193_1213523_+\|non-heme-iron-oxygenase-ferredoxin-subunit	unknown	unknown	gnl\|CDD\|239604
NZ_CP009548.1\|WP_006028014.1\|1206750_1207914_-\|muconate-cycloisomerase	unknown	unknown	gnl\|CDD\|162905

Protein	Function_ID	Function_description	E-value
NZ_CP009548.1\|WP_015603854.1\|1204058_1204349_-\|muconolactone-Delta-isomerase	gnl\|CDD\|213786	TIGR03221, muco_delta, muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol. [Energy metabolism, Other].	1.05071e-51
NZ_CP009548.1\|WP_006028011.1\|1211383_1212661_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|176889	cd08880, RHO_alpha_C_ahdA1c-like, C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. Other oxygenases belonging to this subgroup include the alpha subunits of anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1, a polycyclic aromatic hydrocarbon dioxygenase from Cycloclasticus sp. strain A5 (PhnA dioxygenase), salicylate-5-hydroxylase from Ralstonia sp. U2, ortho-halobenzoate 1,2-dioxygenase from Pseudomonas aeruginosa strain JB2, and the terephthalate 1,2-dioxygenase system from Delftia tsuruhatensis strain T7. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	1.34687e-120
NZ_CP009548.1\|WP_041862155.1\|1208963_1209989_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|373110	pfam14525, AraC_binding_2, AraC-binding-like domain. This domain is related to the AraC ligand binding domain pfam02311.	2.1637e-28
NZ_CP009548.1\|WP_006028007.1\|1214961_1215378_+\|HIT-family-protein	gnl\|CDD\|238608	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.	3.17453e-50
NZ_CP009548.1\|WP_006028020.1\|1201063_1203070_+\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
NZ_CP009548.1\|WP_043283007.1\|1217215_1217749_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.72807e-15
NZ_CP009548.1\|WP_006028019.1\|1203069_1203678_+\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|131889	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	2.46242e-90
NZ_CP009548.1\|WP_043283008.1\|1215414_1217043_-\|phospholipase-D-family-protein	gnl\|CDD\|197212	cd09113, PLDc_ymdC_like_2, Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins. Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli cardiolipin (CL) synthase. The prototype of this subfamily is an uncharacterized protein ymdC specified by the o493 (ymdC) gene. Although the functional characterization of ymdC and similar proteins remains unknown, members of this subfamily show high sequence homology to bacterial CL synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Moreover, ymdC and its similar proteins contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characteriszes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.	1.10906e-80
NZ_CP009548.1\|WP_045554718.1\|1204638_1205658_-\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.06676e-41
NZ_CP009548.1\|WP_009915779.1\|1217777_1219064_+\|DUF445-domain-containing-protein	gnl\|CDD\|377281	pfam04286, DUF445, Protein of unknown function (DUF445). Predicted to be a membrane protein.	3.83767e-134
NZ_CP009548.1\|WP_006028015.1\|1205816_1206719_-\|catechol-1,2-dioxygenase	gnl\|CDD\|239543	cd03460, 1,2-CTD, Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.	9.49996e-163
NZ_CP009548.1\|WP_006028008.1\|1213509_1214754_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	8.76566e-77
NZ_CP009548.1\|WP_006028010.1\|1212675_1213173_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-beta	gnl\|CDD\|238357	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.	6.74106e-38
NZ_CP009548.1\|WP_085954781.1\|1210171_1210989_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.25663e-26
NZ_CP009548.1\|WP_006028002.1\|1221100_1222741_+\|acetolactate-synthase-large-subunit	gnl\|CDD\|236239	PRK08322, PRK08322, acetolactate synthase large subunit.	0
NZ_CP009548.1\|WP_009915778.1\|1219226_1220807_+\|Na+/H+-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	3.41478e-74
NZ_CP009548.1\|WP_006028018.1\|1203678_1204011_+\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	1.81522e-37
NZ_CP009548.1\|WP_006028013.1\|1208003_1208891_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176136	cd08445, PBP2_BenM_CatM_CatR, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold. This CD includes the C-terminal of LysR-type transcription regulators, BenM, CatM, and CatR, which are involved in the benzoate catabolism. The BenM and CatM are paralogs with overlapping functions. BenM responds synergistically to two effectors, benzoate and cis,cis-muconate, to activate expression of the benABCDE operon which is involved in benzoate catabolism, while CatM responses only to muconate. BenM and CatM share high protein sequence identity and bind to the operator-promoter regions that have similar DNA sequences. In Pseudomonas species, phenolic compounds are converted by different enzymes to central intermediates, such as protocatechuate and catechols. Generally, unsubstituted compounds, such as benzoate, are metabolized by an ortho-cleavage pathway. The catBCA operon encodes three enzymes of the ortho-pathway required for benzoate catabolism: muconate lactonizing enzyme I, muconolactone isomerase, and catechol 1,2-dioxygenase. CatR normally responds to benzoate and cis,cis-muconate, an inducer molecule, to activate transcription of the catBCA operon, whose gene products convert benzoate to catechol. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.58702e-98
NZ_CP009548.1\|WP_006028009.1\|1213193_1213523_+\|non-heme-iron-oxygenase-ferredoxin-subunit	gnl\|CDD\|239604	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.	6.76583e-46
NZ_CP009548.1\|WP_006028014.1\|1206750_1207914_-\|muconate-cycloisomerase	gnl\|CDD\|162905	TIGR02534, Muconate_cycloisomerase_1-2, muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).	0

>NZ_CP009548.1|WP_085954781.1|1210171_1210989_-|IS5-family-transposase
MGKPIIDDELWALIEALLPPPKPRRFKYPGRKPVADRAALTGILFVLKTGIRWRDLPSEMGCGSGVSCWRRLRDWQQAGVWDRLHAVLLAKLRAAEKIDFSRVVVDSSSIRAVGAGGKTGPNPTDRARPGSKHHIATDANGTPIAAILTGANRNDVTQLVPLIEAIVPIGGVRGRPLSRPARVYADRGYDHDKYRRILHERNIPTSIARRGQPHGSGLGKVRWVVERTHAWLHHFRRLRIRFERRADIHEAFLKLGCCLICWNTLRRAQQSL
>NZ_CP009548.1|WP_041862155.1|1208963_1209989_-|AraC-family-transcriptional-regulator
MPPGRRTIFRTPALCARQTIMPPTPFDPLALREHRLFESRDLDETRERISRVMQPHALLPDGTRHGPSHMDFVRLGGLGIGTIAFGDAMRVRVDAVDGYHLLMFCLTGAAQVRTMGRAFDVDAHTGVLCAPGEPFDAHLSRDCEQFVLRIDAATLAAHAGDTAASLDPVIGVDDSALSAWMQQLKLVARSPELLASASANPRVAARLEQLLLDLLIDGHPPAAAPARRADPAPGFVRRAQEFIYAQLAQPLQLADIAQAAGVPERTLRDGFLQFRGMSPMQYLRKLRLDRARDLLRTAAPDRRIAEIALDCGFAHFGRFAIAYRERFGELPSATLADRRDA
>NZ_CP009548.1|WP_006028013.1|1208003_1208891_+|LysR-family-transcriptional-regulator
MELRQLRYFIAVAEEMNITRAAQRLHMTQPPLSRQLQLIEDEIGLPLFERGARPLKLTDAGRVLYAQARRVLEQADELAPLTRRLAQAAERIVIGFVPSTLYGALPDVIRAFREAAPAVELSLIEMFTLEQLGALKGGRIDIGFGRLRFDDEQLVREVLVEERLIAALPHGHPLAAPGAPISLADIAGQTLIVYPSTPRPSFADQQLSALRDGGLAPAAVHEVRELQTALGLVAAQVGVSLVPESVEGVRVKGVVYRRLPEPVATSPIILSRRLHDESRATGLFCSLARELMAGR
>NZ_CP009548.1|WP_006028014.1|1206750_1207914_-|muconate-cycloisomerase
MIATGITIDRVTIDRVTIDRVDTLLVDVPTIRPHRLAVATMNCQTLVLVRVRCSDGIEGVGEGTTIGGLAYGEESPESIKTNIDAYFAPLLQGADATRPGAAMARVRKLLQGNRFAKCALETALFDAHARRLGVPLSELFGGRTTDALDVAWTLASGDTARDIAEAEAMLEARRHRAFKLKIGARAVADDVAHVVAIKRALGEHGDVRVDVNQAWTESEAVWAGARLADAGVSLVEQPIAAANRAGLKRLTALAHIPIMADEALHGPVDAFALARDRAADVFAVKIAQSGGLQGAAAVAAIAAAAGIDLYGGTMLEGAAGTIASAQLFSTFGALEWGTELFGPLLLTEEILVEPLRYEDFKLHLPAAPGLGIAFDWARIERMRRKAR
>NZ_CP009548.1|WP_006028015.1|1205816_1206719_-|catechol-1,2-dioxygenase
MNKEAIDALLKSFDDAATKPGNPRTRAIVNRIVRDLCYTIEDFDVQPSEFWTALNYLNEAGKEFGLIAAGLGFERFLDVRMDEAEAKAGLQGGTPRTIEGPLYVAGAPESVGHARLDDGTDLGRTLVMRGRVLGEDGAPLANALVEVWHANHLGNYSYFDPSQPAFNLRRSIRTDAEGRYSFRSVLPVGYSVPPGSKTEQLLDQLGRHGHRPAHIHFFVSASGHRKLTTQINIEGDPHIWDDFAFATREELIPKIAQAEGARGKPYGIDGQFALIDFDFTLTRERGDVPASEVERVRAQA
>NZ_CP009548.1|WP_045554718.1|1204638_1205658_-|IS110-family-transposase
MNSMAVGVDIAKNVFQVHYVAQGSGEIVNKPIKRAKFLEHFANRARCLIGMEACGGAHHWARELTRLGHEVRLMPAEFVKAFNIRNKNDAADARAIWLAVQQPCKPVAMKTEMQQAMLALHRMREQLVKFRTMQSNGLRGLLTEYGEVMSRGRAKLDKAIPAALDRLAERLPAALIDTLREQWSGLARLDGQIAEIERRMREWKKEDGAVAAISEIPGVGLLTATAAVAMMGDPKAFSSGREFAAWAGLVPKQTGSGGKVNLHGISRRGDTYLRTLLIHGARSVLSHAKEPGPWVEQMKKRRPANVVIVALANKMARTIWAVLAHDRPYRKDYVSVKPA
>NZ_CP009548.1|WP_015603854.1|1204058_1204349_-|muconolactone-Delta-isomerase
MLFHVEMIVNLPADIDPVKAAALKAEEREIAQRLQREGVWRHLWRIAGRYANVSIFDVESPAHLHDVLSQLPLFPYMRIDVRALCRHPSSIRDDDR
>NZ_CP009548.1|WP_006028018.1|1203678_1204011_+|cytochrome-o-ubiquinol-oxidase-subunit-IV
MADTHLSHDGEAHGTVGGYIAGFLLSVLLTAASFGLVLSGALSSHASLVGLAVLAFVQIVVHLVYFLHMNTSSSQRWNVMAFSYTVLTAAILIVGTLWVMHNVGMNMMSR
>NZ_CP009548.1|WP_006028019.1|1203069_1203678_+|cytochrome-o-ubiquinol-oxidase-subunit-III
MSYQSVSAARHQAAHDHPPSHSVFGFWLYLMTDCVIFAALFAVFAVMAHQFAGGPTAVDLFDIPGVALETALLLLSSITYGFAMIGAQRGRRGVLFGWLAMTFALGAAFLGLELREFSHLIAEGAGPQRSAFLSSFFTLVGTHGLHVAIGLLWMAVLAFQAMRRPALTERDIRRLTCLSLFWHFLDIVWICVFTFVYLASVI
>NZ_CP009548.1|WP_006028020.1|1201063_1203070_+|cytochrome-o-ubiquinol-oxidase-subunit-I
MFGKLTLSAIPFDQPIIMGAGAFMGLVVLGILGALTYTKRWKWLWTEWLTSVDHKKLGVMYIIVALIMLLRGFADAVMMRLQLALAYNGPGYLPPHHYDQVFTAHGVIMIFFMAMAFMIGLMNIIVPLQIGARDVAFPFINSLSFWMTAVSAILINISLVVGEFAQTGWLAYPPLSELQFSPGVGVDYYLWALQISGVGTLLTGVNFFVTILRMRAPGMTMMKMPVFTWTALCTNVLIMASFPILTVTLALLGLDRYLGMHFFTNDAGGNAMLYLNLIWAWGHPEVYILILPAFGIFSEVVATYAKKPLFGYKTMVYASCAIMVLSFLVWLHHFFTMGSGANVNAFFGIMTMVIAIPTGVKVFNWLFTIYRGRLEFSTPVLWTIGFMVTFTLGGMTGVMMAIPGADFVLHNSLFLIAHFHNVIIGGVLFGYLAGFNYWFPKVFGFKLNEKLGKAAFWFWQVGFYVAFVPLYVLGFMGMTRRLNHYDNPAWHPWLIVAACGAGLIAIGIACQLLQLVVSLRDRKLPGNRDLTGDPWGGRTLEWATSSPPPAYNFATIPTVHTLDEFAYRKGRGLGLGKQAEYRDIHMPSNTSAGLFVGVFSLVLGFAAVWHIWWLAIASLVGIVVTVIAYSASDNDGYYIPADAVRKIEEKRGGARFVARPAEVELEAN
>NZ_CP009548.1|WP_006028011.1|1211383_1212661_+|Rieske-2Fe-2S-domain-containing-protein
MDPTESPVILIDHTDSSDVRFPHDDGSRVPYKVFSSQAVYDREQERIFRGQTWNFVALEAEIPKPGDFKSTFVGDTPVVVTRREDGTLAAWVNRCAHRGAQVCRKARGNASSHTCVYHQWSFDSQGNLLGVPFRRGQKGMAGMPADFDPKNHGLRKLQVDSYKGLVFATFSDAVAPLPDYLGAQMRPWIDRIFHKPIEYLGCTRQFSKSNWKLYFENVKDPYHASMLHLFHTTFNIFRVGMKARSIPDATHGLHSIITMTKTRDDADTATAYKQQNIRSFDEGFSLEDDSILALVSEYDEDTTNHIQPIFPQLVIQQIHNTLVARQLLPKGPKNFELIFHFFGYADDTPELRDLRIRQANLVGPAGYISMEDTEATELVQRGTVRDAHAASVIEMSRGNPDQQDTAITESLIRKFWVGYQQLMGY
>NZ_CP009548.1|WP_006028010.1|1212675_1213173_+|aromatic-ring-hydroxylating-dioxygenase-subunit-beta
MTGITDDITDDIRTWYELHLLQDRYIGHLDNDRLERWPELFTEDCLYEIVPKENADLGLPIGIVHCTNRRMLRDRVVSLRHANIYEAHTYRHLTSGLAIVGGQDGEIETESSYVVVQTRSDGESNVYQAGKYYDTVVRTAAGLRYRKKRVIYDTSRVQTLLATPI
>NZ_CP009548.1|WP_006028009.1|1213193_1213523_+|non-heme-iron-oxygenase-ferredoxin-subunit
MSQETVAAWHPLGALDEFSEGEPAARVVGSRPIAVFRLGDDVFALHDLCTHGHARLSEGFAENGCVECPLHQGLFDIRTGAPKCAPVTEPVRVYPVRIVDGRVEIHVDE
>NZ_CP009548.1|WP_006028008.1|1213509_1214754_+|FAD-dependent-oxidoreductase
MSTNDPYLIAGGGHAARRAAETLRERDPAARIVMIGAEPELPYDRPALSKDALVGGDEGERRAFVRDAAWYRERDIALRLGVRVEAIERRAQRVRLSDGASLGYARLLIATGSRVRRFAGPVDAGVAVHYVRTVADARALRAALAPGKRVAVLGGGFIGLEVAASAVRLGCRATIVEPAPRLLQRAMPEAVGAFALALHARHGVDVRLGALPERIRRGANGMAVVETSAGGIAADVVVAGIGIVPNVELAQAAGLHVDDGIRVDERCRTADAAIFAAGEVTRHFNPLVGRHLRIESWQIAENQPAVAAANMLGGDEAYAQWPWLWSDQYDCNLQTLGLFDGGQTLVLRGSPERDRAFCVFGLNARRELRAVAAVNAGREIAGCRRLMTANVALDPACLADPSVALRSMLRGGAQ
>NZ_CP009548.1|WP_006028007.1|1214961_1215378_+|HIT-family-protein
MAYDQSNIFAKILRGEVPCIRLCETDTTLAFMDIMPQSKGHALVVPKEAAQTFYELSEAAAAEAMKMTKRVALALRSALEPEGLFIGQFNGAAAGQTVPHVHFHVIPRWADEPLKMHAREMADAAELEALAVRIRTAL
>NZ_CP009548.1|WP_043283008.1|1215414_1217043_-|phospholipase-D-family-protein
MPDRPARRRLAPRRPLRIVTAAARALALCAALGLAGCATHPPATALDRTVSRALPPDAPTPLADALAAQARVHPGESGFVVLPRGDEALQMRIAVARAAAKTLDIQYYIAAEDTTGKLLLGAALYAADRGVRVRMLVDDLNFKDVDRLMAALDAHANLEVRVFNPFGAARLGMFARTANVFTRIDNFTRRMHNKAMIADNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRDVSTSFDAYWSSALTYPLPALNQRRYDAKDLDAARDALRAHWRANATPFNAKPLNATPLAAQIARNELGLVWASAEFTADSPDKIAAPDDSYKSPPMQRLFELTRDAQREFLVLSPYFVPHDAGVKALGRLTTRGVRVAILTNSLAATDAVAVQAGYAPYRAAMLKHGVELYEYKPDQGRSRIGMLGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPQLANEVANLFDEVTKPTISYRVTLAPDAPHAPAWPLVWTEVADGRVRTYSVDPNAGFYRNLLAGFCLLLPIDDQL
>NZ_CP009548.1|WP_043283007.1|1217215_1217749_+|GNAT-family-N-acetyltransferase
MTHPASAPSVEIRRLFAAHAADYRAIRLAALRDAPEAFGSTYDAEAERSLAAFAQRLDSSIVFGAYVDGAIAGMAGFKRLDGAKERHKGFLWGVYVAPAARRLGVGAALLDAALAAAAQTVEQVTLAVIDGNGAARAFYERHGFVAYGVEPRALKGANGYADELLMMRFLPSAPPRG
>NZ_CP009548.1|WP_009915779.1|1217777_1219064_+|DUF445-domain-containing-protein
MLDDKERELRNSKRRALALLLAAAGVFAATLFAPRGFWIDGVKAVAEASMVGALADWFAVVALFRRVPIPFVSRHTEIIPQNKEKIADNLAAFVHEKFLDPASIVALIKRHDPAARLAQWLATPRNADVLGGYAARLIAFGLDMTDDVRIQSFMKDAFHAVLDRIDLSQSAGAILDTLTKDGRHQALLDDGIAQIVGFLRDPDNRASIATYIVDWLKYQFPKMEKLLPTNWLGEHGAELISNVVTRVLTQIAEDPEHRLRRSFDDAAARLVARLKGDPAFIGKGEEIKRYLRDGDAFNRYMKDLWDQLRAWLKADLARDDSVVHQRATALGGWLGERLAQSPQLRDSMNEHVERAASEMAPEFAEFLTRHISDTVKNWDAREMSRQIELNIGKDLQYIRINGTLVGGLIGLGLYAVSSIARWVGALPY
>NZ_CP009548.1|WP_009915778.1|1219226_1220807_+|Na+/H+-antiporter
MSPVSAFKLVLLSFLAIVALELLAKRLKLPPAAALLVGGAGIAFLPGLPPVNLDPDLVLIVFLPPLLMDGAYFSVWEEFKRNVGGIMMLAIGAVAFTTLAVGVAVHLVAPGLPWAACFALGAIVSPPDAVAAKAVLERVALPRRLMVLLEGESLLNDAAGLVLFRFAVAAALTGAFSAGDAVVRFAELGVGGVAVGGVVGWLIVRLLKLIEDDYLVITVAVLAAWISYIAGEMFEVSGVIATVTTGMMLGWHQHEVFSASVRNRGTAFWQVIVFLLEALVFVLIGLSLRGVIERLGGLGEVFATMTPAVVAVLVAVVASRFVWVFAVELLKAPVARVRGRGLRGDWKAAAVMSWAGMRGVVTLAIALSLPDAMPGRDLILVAAFAVILVTVLLQGTTIGPLIRLLKLRDPGRAAHHLTEPQTWARVEAAQLAAIQPLVRDADGNVIHPRLLEQYTYRANMTARHQNEPAFAQSEREAHYDVVLAAIAAGRAELLRLHRGGQIHDEMLYLLERDLDLQEIAAEHAKG
>NZ_CP009548.1|WP_006028002.1|1221100_1222741_+|acetolactate-synthase-large-subunit
MKASDLFVKALEAEGVQYVFGIPGEENLDLLESLRRSRIKLVLTRHEQAAGFMAATYGRLTGKTGVCLATLGPGATNFVTAAAYAQLGGMPMLMITGQKPIKSSKQGHFQIVDVVGMMQPLTKLTRQIVSIGNIPSAVREAFRRAEEERPGATHLELPEDIAHEEGDGEPIPASYSRRPIAEEKALARAIDAIQAARHPLLMIGAGGNRKTTCKMLKEFVDTTGIPFFTTQMGKGVIDETHPLWLGNATLSDGDFVHRAIEHADCIINVGHDVIEKPPFFMRADDKTVIHVNFLGAQVDPVYFPQIEVVGDIANAVWQMKEKLTRQPHWDFSRFMLIKEHFEAHLKKGQDDPRFPMYPVRIVNDLYRSLPEDGIVCLDNGMYKIWFARYWRAHEPNSLLLDNALASMGAGLPSAIATKIVHPQRKVIAVCGDGGFMMNSQELETAVRLKLDLVVMILRDDAFGMIRWKQENMNFPDYAMTLANPDFVAYAQSYGAHGHRIASADALEPLVRECFASPGVHLIDVPIDYSDNERVLNREIKRLSAQL

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Crispr_ID: NZ_CP009548_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009548_2

2564617-2564708

Orphan

Consensus_repeat	Method
GCGACGCGCGCAAGGCCGAAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009548_2

>merge|NZ_CP009548|2|2564617-2564708|CRISPRCasFinder
GCGACGCGCGCAAGGCCGAAGCGGGCACGAAGCGCGCGACCGACGACGACAAGCACCGCAAGCACGACGGCGACGCGCGCAAGGCGGAAGCG

>NZ_CP009548|2|1|2564617-2564708|CRISPRCasFinder
GCGACGCGCGCAAGGCCGAAGCG	GGCACGAAGCGCGCGACCGACGACGACAAGCACCGCAAGCACGACG
GCGACGCGCGCAAGGCGGAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009548.1\|WP_006027016.1\|2567975_2569307_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP009548.1\|WP_043282834.1\|2570459_2571935_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277318
NZ_CP009548.1\|WP_006027015.1\|2569356_2570265_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226145
NZ_CP009548.1\|WP_006027012.1\|2573640_2574501_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377216
NZ_CP009548.1\|WP_006027017.1\|2567143_2567869_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP009548.1\|WP_006027021.1\|2562273_2563290_-\|1-aminocyclopropane-1-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|183494
NZ_CP009548.1\|WP_006027024.1\|2558955_2559945_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|275336
NZ_CP009548.1\|WP_162486732.1\|2560016_2560325_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009548.1\|WP_006027026.1\|2557739_2558036_-\|DUF1330-domain-containing-protein	unknown	unknown	gnl\|CDD\|377765
NZ_CP009548.1\|WP_015602484.1\|2556182_2557676_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|178402
NZ_CP009548.1\|WP_006027022.1\|2561767_2562241_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009548.1\|WP_009915238.1\|2577862_2578135_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009548.1\|WP_006027018.1\|2565680_2566943_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP009548.1\|WP_006027013.1\|2571931_2573470_+\|cytochrome-c-methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|224771
NZ_CP009548.1\|WP_162486733.1\|2560302_2560770_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009548.1\|WP_006027010.1\|2576674_2577448_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378321
NZ_CP009548.1\|WP_006027020.1\|2563484_2563994_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP009548.1\|WP_009915228.1\|2558096_2558900_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009548.1\|WP_006027023.1\|2560757_2561618_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP009548.1\|WP_006027011.1\|2575091_2576660_+\|tyrosinase-family-protein	unknown	unknown	gnl\|CDD\|365987

Protein	Function_ID	Function_description	E-value
NZ_CP009548.1\|WP_006027016.1\|2567975_2569307_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.79623e-132
NZ_CP009548.1\|WP_043282834.1\|2570459_2571935_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	8.62468e-09
NZ_CP009548.1\|WP_006027012.1\|2573640_2574501_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377216	pfam04072, LCM, Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.	8.58721e-51
NZ_CP009548.1\|WP_006027021.1\|2562273_2563290_-\|1-aminocyclopropane-1-carboxylate-deaminase	gnl\|CDD\|183494	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional.	0
NZ_CP009548.1\|WP_006027024.1\|2558955_2559945_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|275336	TIGR04543, 2-ketoarginine_methyltransferase, 2-ketoarginine methyltransferase. This SAM-dependent C-methyltransferase performs the middle step of a three step conversion from arginine to beta-methylarginine. It performs a C-methylation at position 3 of 5-guanidino-2-oxopentanoic acid (keto-arginine). An aminotransferase converts arginine to 5-guanidino-2-oxopentanoic acid, and later converts 5-guanidino-3-methyl-2-oxopentanoic acid to beta-methylarginine.	2.82639e-13
NZ_CP009548.1\|WP_006027017.1\|2567143_2567869_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.27472e-56
NZ_CP009548.1\|WP_006027026.1\|2557739_2558036_-\|DUF1330-domain-containing-protein	gnl\|CDD\|377765	pfam07045, DUF1330, Domain of unknown function (DUF1330). This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.	3.01051e-35
NZ_CP009548.1\|WP_015602484.1\|2556182_2557676_-\|FAD-binding-protein	gnl\|CDD\|178402	PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].	9.22118e-154
NZ_CP009548.1\|WP_006027015.1\|2569356_2570265_+\|amidohydrolase-family-protein	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.0857e-70
NZ_CP009548.1\|WP_006027018.1\|2565680_2566943_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.33757e-72
NZ_CP009548.1\|WP_006027013.1\|2571931_2573470_+\|cytochrome-c-methylamine-utilization-protein	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	8.15273e-84
NZ_CP009548.1\|WP_006027020.1\|2563484_2563994_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.54063e-48
NZ_CP009548.1\|WP_006027010.1\|2576674_2577448_+\|hypothetical-protein	gnl\|CDD\|378321	pfam09948, DUF2182, Predicted metal-binding integral membrane protein (DUF2182). This domain, found in various hypothetical bacterial membrane proteins having predicted metal-binding properties, has no known function.	2.48142e-16
NZ_CP009548.1\|WP_006027023.1\|2560757_2561618_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.9086e-22
NZ_CP009548.1\|WP_006027011.1\|2575091_2576660_+\|tyrosinase-family-protein	gnl\|CDD\|365987	pfam00264, Tyrosinase, Common central domain of tyrosinase. This family also contains polyphenol oxidases and some hemocyanins. Binds two copper ions via two sets of three histidines. This family is related to pfam00372.	5.36442e-30

>NZ_CP009548.1|WP_006027020.1|2563484_2563994_+|winged-helix-turn-helix-transcriptional-regulator
MGATKKSTPKAAAQPAGADIDRVDRAILRVLQRDASISNVALAAKVNLSPPACLRRVERLKEMGLIRGIVALLEPKALNAGMLVMIGVVLDRSTPDSFDAFEQAAQKVSGCMECHVVTGEFDYVMLIRTRDSDTFNRLHAEQLLYLPGVRQIRTFVVLKEILSTTSFPI
>NZ_CP009548.1|WP_006027021.1|2562273_2563290_-|1-aminocyclopropane-1-carboxylate-deaminase
MNLQKFPRYPLTFGPTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLVPDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFTFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGIDASAKPAQTREQILRIAKNTADRIELGRDVTSGDVVLDERFGGPEYGLPNEGTLEAIRLCAKLEGVLTDPVYEGKSMHGMIEKVRLGEFPAGSKVLYAHLGGVPALNAYSFLFRDG
>NZ_CP009548.1|WP_006027022.1|2561767_2562241_-|hypothetical-protein
MNGALDSHREASAARWWQPPSSPTLVCVVGDDTLPAACCGALAKRLAGVPQIALLGCAEPARLHALWLDARSRARARLPADVAPLERALGALSRDAWLLLWSQQPQLLDWIGGVHGNRTLVVRHCPLTCDETELQRAADAALAALRAAVRLRIDAEY
>NZ_CP009548.1|WP_006027023.1|2560757_2561618_+|AraC-family-transcriptional-regulator
MAKLDHRNQSRYWHSPGISGIDLLLADFTTHDYAPHVHDSLVIAVTEVGGSVFKSRGQTRLAEPDAVLVFNPCEPHSGRMGGSSRWRYRSFYLAEAGLSRVLTLLGMEQPRFFTSNVLNDPQLVEQFLTLHRAMDEQDDLLLQQELLVSSFGTLFSRHGLQAGLGFGAKADLPILKPALDLMNDSFDHALTLEQIAAAANLTSFQLITAFNRVIGLTPHAYLNQLRLRAALRELQAGRSLADAALTSGFYDQSALCNHFKRTFGMTPMQYTRALAPGKRAAAPIGI
>NZ_CP009548.1|WP_162486733.1|2560302_2560770_+|hypothetical-protein
MTSAFIIDRRPQFNWRSIFLRFDLSIRTGFVLYRENVFSWCIALHKKISRDDRYSPAARLPNLRKRKARSDIGCRFRIAVAIPSKISPSTRGARPAAPGAAAHRGTELACRAMLTRADDIGRPAGARDAERRARSGTVRRRLFRFIGIGVRPWPS
>NZ_CP009548.1|WP_162486732.1|2560016_2560325_+|hypothetical-protein
MDKIETRRFFRDATAAHRCAPRETRCRAERRHRRLTAAVPGLRIRPRKPLCESGMTAGMTAGMTAGTAAALVQIHFGFAADFCDTNIGKLEKGGQIDVGIYY
>NZ_CP009548.1|WP_006027024.1|2558955_2559945_-|methyltransferase-domain-containing-protein
MQNVDRPTGSSLAGAAILLEIGSAYGVVDFIRHSKGFDVAALAERSGIDRPVIAEYVDAMREAGLLSLAKSGERDIYRPADDFPDVVNDVGYLSWALLACAPLILNAREFAADNALAQARHPRDGGLVARTSKWMGELSFYPQPERAILKLRPKKIVDLGSGSGGFLIRMLHQLDGARGVGVDLSATATEQAKQAAEANGFAGRLEFLHRPIQSLIDDPTPLKGADVVHAGFVMHDLLPAEERTLDALLETCREHASSGTVVIVDAVPLAPDQWERSFAAAFNHLHRNFMSRRLLSETEWREKFEKAGFGNVAVETLGHPGGRMILGSA
>NZ_CP009548.1|WP_009915228.1|2558096_2558900_-|hypothetical-protein
MPITVDELVQKVKSHRCYTHPVFMNWAKVDPEPKVVGALFHQIQNFCASTRPGWNFPQALADHGLQKQSELMNEIVDSESGHGPELATMAGYIVNRAAGSAVIPDLYDQAAVEGVLKHYSDELLGSLPGYDDETGLTTQVRRAISVFERRKLVDVESTYRNLGTALALEMISNRQLIPGEKHCLVDSGLYDATLEVPEMHYLLEHWGEVGAEQQHEENARAAVKPALESEHAALVIEGAEEFLNALASVWDLLDASLLESGYVKKAA
>NZ_CP009548.1|WP_006027026.1|2557739_2558036_-|DUF1330-domain-containing-protein
MTAYLLGRMAISDPSKYARYKALTPDIIARFGGRFLTRGGDKLTLEGPADERRIVLVEFADADAAARFYHSADYQHAKSLREGAADMQLMIVGGFEQK
>NZ_CP009548.1|WP_015602484.1|2556182_2557676_-|FAD-binding-protein
MRDVTNDEQRSGGWGAFPVGAPPDGDAPAAFATPETVGRCVDELRTVVGERLVVGRAVREQHGKDISFHPGAPPDAVAFVQSTAEVAAITRVCHRLRVPLIPFGTGTSCEGHIAALRGGVCIDLSGMNRILRVSTEDLDCTVEAGVTRKQLNAHLHDTGLFFPIDPGADASIGGMCSTRASGTNAVRYGTMRESVLALEVVLPNGDVTSVGSRARKSAAGYDLARLFVGAEGTLGTITGVTLRLHPRPDQVSAAVCGFADLKAAVDSVIAIIQSGVPIARVELLDAMQIAACNRYSKLSLQERPTLFFEFAGFGAAVDEQIGWVGEICAGHGGSEFRWASRPEERSALWAARHDVWWATLALRPGCEGMPTDSCVPVSRLAEAVLAARADVDALGLVATICGHVGDGNFHVCIVIDPADADELARATELNRRLALRAIALGGTCTGEHGVGYGKIGYLEREHSTSLQLMAAVKRALDPRGIMNPGKVLHHDRYPPFD
>NZ_CP009548.1|WP_006027018.1|2565680_2566943_-|MFS-transporter
MTKIARRLMPLLVIMFLIAFIDRQNVGFAKLQMVHALGMTETSYGLGASLFFIGYLLFEVPSTLALHRFGARLWLARIMMTWGVVTVLLGFTHSTSVFYVFRFLLGVAEAGFYPGVIYYLTLWFPQSHRTRVLGLFTLGSALANMLGSLAGGLLLSLDGRLGLAGWQWVFVATGLPAVAVALVALRLLPESVERATFLSDDEKRVALAALKREASPEAVSESPWRALVDPRVLMFALAYMLMSTSLYGVTYWLPTLLKSSGVPSSLNGLLNMIPWAIAALLLLWLPARLKRERIVLKAMAIVAGVGVAGFALSLALPGLPWRFAALVLGGACIPLLYPCFWSLPPRFFSGARAAASIAAINSIGNLGGFFAQNLMPYVGKVAGSASAPMLVPVVCLATLGVGMLAAASMAGRRRAAGMAA
>NZ_CP009548.1|WP_006027017.1|2567143_2567869_+|GntR-family-transcriptional-regulator
MHATDDRLPRYQRLRDELAALIAARHWRPGEAIPTEQALAKRYDVAIGTVRKAVDLLVADGMLERFQGRGTFVRRASFDSSLFRFFRFQSKHGERRIPESRILRREVVEAPSAVAAALQIPARASVIAMTRVRLIDGAPMLAEEIWLPYDRFAAFARLELDSIGDLLYPVYEAHCNQIVASATETLTVEAIGPVHARLLRIEPGTPAVVIERLACGYDRRPLEWRRSRGPASEFIYQAEIR
>NZ_CP009548.1|WP_006027016.1|2567975_2569307_+|MFS-transporter
MFKWFAAVSPRERRTFWACFGGWALDALDVQMFSLVIPAIVAEWSLSRTQAGFVGGATLVASAVGGWAAGMLSDRFGRVRTLQWTIACFSVGTFACAFATSYPQFVVLKTLQGAGFGGEWAAGAVLMAETIRAEHRGKAMGAVQSAWALGWAAAVLLYALAFSLMPAELAWRAMFGIGLLPALLIVYVRRGIVEPSASASSASHASSTPGAPNEPAAARASAPLVGIFSRDMRRMTLIGALLGVGAHGGYYALMTWLPTYLKIERHLSVLGTGGYLAVIIVAFFCGCIASAQLLDRIGRRGTILAFAACCVATVIAYLFLPLGNAAMLVLSFPLGFFAAGIPASMGALFNELYPRGTRGTGVGFCYNFGRVASAGFPVLVGHMSAGMPLGTAIGIDAAIAYSIVVVAVLMLPETRGRALDDRANTHAADAGADRIGAPGAQHR
>NZ_CP009548.1|WP_006027015.1|2569356_2570265_+|amidohydrolase-family-protein
MSDQEWNACAHAAAMRHAAGDITAIDAHAHVFETGLPLAGQRRYAPDYDAPLGAYLAQLDAHHVSHGVLVQPSFLGSDCRYLLRALAQQPRRLRGVAVIDAGCEPHVLDALDRAGIVGIRLNLIGMPDPALDGPAWRATLERIAALRWHVELHAQAHRLGRLIAPLLAHRLNIVVDHFGRPDPACGIADAGFRDLLHAAATRRVWVKISGVYRNWPLAPDEADARAREAFDALAAEFGAERLVWGSDWPHTQFERTETFGRACALARRWMRDDAMRRAIFVETPARLFRFGESRGTQRVGSG
>NZ_CP009548.1|WP_043282834.1|2570459_2571935_+|serine/threonine-protein-phosphatase
MPRPILRAAALALTLAGAALFHACTSSIDNQPDAASAPANIQAAWVEIGDDNQAIARVITNYTPPAATSGEPAPAVCPQLNADGKIARMTLRITAGTAAQRQTASDPADSKPSSFPVSVCETTLPANAQDVTVAGRALPLPKAEPQRVAIIADTGCRMKKADNAFQACSDATVWPFATIAASVAKLNPDLVLHVGDYHYRENACPPDIAGCKNSPWGYGWDTWRADLFEPAAPLLAKAPWVVVRGNHEECARAGQGWFRFLDPRPYSDARSCNDPANDGNANYSEPYAVPLGTGTQVIVFDTAKVGRAALKTTDVPFQIYQKQFQTVAALANKPGMSTTIFTNHHPILAFAPIPGSTPAPGNLALQSVMSSLYAQAYYPPGVQVALHGHVHDFQAINFASGHPATIVSGNGGDNLDVALPDPFPANLTPAPGVVIDRLSHNNSFGFLIMERRAAPARGWTFKAYTAAGKLLANCDQAGTTLTCDKTGFVAP
>NZ_CP009548.1|WP_006027013.1|2571931_2573470_+|cytochrome-c-methylamine-utilization-protein
MTDSKRRIAARRAEAAAFAARACAIAFAPGQAAFGTMRKCRPIPTIARAASGVLAACASAIAFASGPAAPGATAPARAKPAQDAVRAGTASPPPPTTILLPGAPPERVVGTIGRGTPQVASKVDPTAAAFRPDPALVALGKRVFFDPALSEPRGTSCASCHDPGRAFAPTLSHAALAGPRVPQGSRPGHFSRRNAPSLLYVRYVPRRHFYQDDDALAPAPFGGLFSDGRADTLAEQLRGPLFDPDEMNNASPAALMRKIGGTALGAALAERFGASVRRDPERMARALGDAMQAYLQSDEMAPFSSRYDAYVTKRAPLTPQELRGLALFRNPDKGNCMSCHTLSDTASRPERSLFTDFGYDAIAVPRNRALPANRDPRHFDNGLCDTAAKLRWPEPTQWCGYLRTPGLRNVAVKESFMHNGVFDTLRDAVAFYNTRSTDPTRWYHGRDTFDDVPRAHRGNINVNSTPMNRRPGTPPAMTNADIDDLVAFLRTLTDARYVGLMPAAPDGKAARP
>NZ_CP009548.1|WP_006027012.1|2573640_2574501_+|class-I-SAM-dependent-methyltransferase
MPNQSITAPDSTAVRVALWRALHVEIDAPPHVLDDVIGLELAAPDDDWRSRPDMEPQATRGYRASIVGRARFVEDLVDEQADGGVAQYVVLGAGLDTFAQRSAKRASHLRVFEIDQPGTQAWKRQRLIALGYGVPEWLRLVPVDFEASGAWRTQLSAAGFDDSRPAVVSSTGVSMYLTREAIADTLRQTATLAPGSTLAMTFLLPLELIDDPAERAQHAAVYERARAAGTPFVSFLSPPEMLALAREAGFREVRHVSTGDLVRRYFDGRPDGLRPSSGEAFLVAST
>NZ_CP009548.1|WP_006027011.1|2575091_2576660_+|tyrosinase-family-protein
MLHANKKGEISMTYLRQNVWDLGADWAEPILWYARGVKAMQSRALDDRNSWRFYAAIHGFQQDLWRRVGYLNAHDKMPSTADIQAYWKQCQHGSWYFLPWHRGYLLALEAVVRDEVLKLRGPKNWALPYWNYFKPGQDLLPKAFASPDWPDGKGDNPLYVKQRYGPYNNGEVYVPTKWINMNALGDPDFEGVASGGSTGFGGVDTGFSHSGRVHGGIETQPHDAVHGIVGGRNRATGLPGLMSHPDIAGLDPIFWLHHANIDRLWEVWRRNPPTHVDPTAVNWLKGPAAIGERPFRMPMPHGENRTYTPGEMSDLSKLGYAYDDVSAPTKTPPTAARLTRLRARATAETPKEDFAVTDPRTVELFGASDQNLPVRGLEARSSVKLDADVHRKLTANLKATAAATSSTPDRVFLNLENVRGLDDATVLNVYVNVPEGEDPAKYPDHLAGCIALFGVSKATVAEDGHAGDGVTFVLEISHVIDALHLAGALPQSQLDVRLIAVTPVAEESKVSIGRISVYRQSA
>NZ_CP009548.1|WP_006027010.1|2576674_2577448_+|hypothetical-protein
MKHAGRRLDAPLVALVSVSLIAWSALIVGAGGLTPPALCSIAGDWRVPLATWLRLAYLSNSPSKFASDSVMMVAAMMAPLAAAPLRHVLERSFARRRMRAALLFVAGYAAVWLAAWIGLQIVAIAFTWVMPGPVARTGAGLALALLWQASPAKQGFLNVCHRRPPLAAFGVAADRDALRFGLASGVSCAGNCWALMLLPLLAGHAHVPATIAVMCFIVAERLERPATPAWRCRGPGKAMRIAAAKVRAKLASLRLSV
>NZ_CP009548.1|WP_009915238.1|2577862_2578135_+|hypothetical-protein
MEHLIRIVNDTDRQILAWLRNQVGDERVERAARHMGRVRKPYLSAVCRYLGVWPPISLRYPARRAEVDHTVGDRYLTLIRQHLATHAASR

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Crispr_ID: NZ_CP009548_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009548_3

2675859-2675947

Orphan

Consensus_repeat	Method
CGGCTCGACCACACTCGGCACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009548_3

>merge|NZ_CP009548|3|2675859-2675947|CRISPRCasFinder
CGGCTCGACCACACTCGGCACGAACTCGGTGACGGCCGCGGCCAACCCGACCAGCAGCGCGACGGCCGGCTCGACCACACTCGGCACGT

>NZ_CP009548|3|2|2675859-2675947|CRISPRCasFinder
CGGCTCGACCACACTCGGCACGA	ACTCGGTGACGGCCGCGGCCAACCCGACCAGCAGCGCGACGGC
CGGCTCGACCACACTCGGCACGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009548.1\|WP_009915303.1\|2671860_2672763_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009548.1\|WP_015602552.1\|2689113_2689899_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235664
NZ_CP009548.1\|WP_006028816.1\|2682396_2682858_+\|YadA-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377158
NZ_CP009548.1\|WP_004198708.1\|2671515_2671731_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009548.1\|WP_006028817.1\|2682854_2684009_+\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP009548.1\|WP_043283154.1\|2680006_2680327_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009548.1\|WP_006028802.1\|2663375_2664068_+\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377460
NZ_CP009548.1\|WP_006028823.1\|2689919_2691527_-\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NZ_CP009548.1\|WP_009915293.1\|2665548_2666499_-\|choline-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188316
NZ_CP009548.1\|WP_006028804.1\|2665306_2665474_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380241
NZ_CP009548.1\|WP_009915315.1\|2685226_2685694_+\|DUF4019-domain-containing-protein	unknown	unknown	gnl\|CDD\|372517
NZ_CP009548.1\|WP_006028811.1\|2670660_2671323_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP009548.1\|WP_162486734.1\|2668626_2669835_-\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NZ_CP009548.1\|WP_006028806.1\|2666618_2667617_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP009548.1\|WP_006028803.1\|2664257_2665256_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009548.1\|WP_006028821.1\|2686988_2688989_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111
NZ_CP009548.1\|WP_006028818.1\|2684030_2685179_+\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP009548.1\|WP_006028815.1\|2680584_2682381_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP009548.1\|WP_009915317.1\|2685718_2686861_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP009548.1\|WP_006028807.1\|2667731_2668634_-\|choline-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226644

Protein	Function_ID	Function_description	E-value
NZ_CP009548.1\|WP_015602552.1\|2689113_2689899_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	3.313e-138
NZ_CP009548.1\|WP_006028816.1\|2682396_2682858_+\|YadA-C-terminal-domain-containing-protein	gnl\|CDD\|377158	pfam03895, YadA_anchor, YadA-like membrane anchor domain. This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterized. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi and others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerization.	3.17052e-06
NZ_CP009548.1\|WP_006028817.1\|2682854_2684009_+\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NZ_CP009548.1\|WP_006028806.1\|2666618_2667617_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.14433e-133
NZ_CP009548.1\|WP_006028802.1\|2663375_2664068_+\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	gnl\|CDD\|377460	pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase. Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalyzing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.	4.85263e-55
NZ_CP009548.1\|WP_006028823.1\|2689919_2691527_-\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NZ_CP009548.1\|WP_009915293.1\|2665548_2666499_-\|choline-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188316	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling () vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009548.1\|WP_006028818.1\|2684030_2685179_+\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NZ_CP009548.1\|WP_009915315.1\|2685226_2685694_+\|DUF4019-domain-containing-protein	gnl\|CDD\|372517	pfam13211, DUF4019, Protein of unknown function (DUF4019). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 130 and 183 amino acids in length. There is a single completely conserved residue E that may be functionally important.	1.27089e-27
NZ_CP009548.1\|WP_006028811.1\|2670660_2671323_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.19955e-21
NZ_CP009548.1\|WP_162486734.1\|2668626_2669835_-\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	0
NZ_CP009548.1\|WP_006028821.1\|2686988_2688989_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP009548.1\|WP_006028804.1\|2665306_2665474_-\|hypothetical-protein	gnl\|CDD\|380241	NF033391, lipid_A_LpxO, lipid A hydroxylase LpxO. Members of this family are LpxO, an enzyme that modifies one of the lipid chains in lipid A by hydroxylation, with resulting changes in resistance to the host immune response and to the antibiotic colistin. This family, as built, includes LpxO1 from Pseudomonas aeruginosa, but not its paralog LpxO2.	7.45572e-21
NZ_CP009548.1\|WP_006028815.1\|2680584_2682381_+\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	8.05674e-14
NZ_CP009548.1\|WP_009915317.1\|2685718_2686861_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NZ_CP009548.1\|WP_006028807.1\|2667731_2668634_-\|choline-ABC-transporter-permease-subunit	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	8.04407e-136

>NZ_CP009548.1|WP_009915303.1|2671860_2672763_+|hypothetical-protein
MSDTLRREQAADHAMRNWVHESRGPVRIGSDAHKQMFCKMLLDTHNPYKPAVIDWPALAPEALQRLTSLPIWDIAVQTEGRASIRVATFASTVRDPLLRAALDLNAAEEARHKVVLSKLVEAYGIRLAREPAYPAPKDAEWAWMVTGFSESIDSFFAFGLFRSAQRSGYFPEELVETFEPVIQEEGRHILFFANWFGWYWRNMRWWRRPWLFARVAAVWAFLIWERIGIARGIDADGVARDANFPANTAATVGDALNPRALIELCLAENNRRMAGYDKRLLRPAIVPRLARFALRFIRKP
>NZ_CP009548.1|WP_004198708.1|2671515_2671731_+|hypothetical-protein
MNRSIRYKGYEVAPAAARLPNGLFAANLTIEKAGPAPARAYSFDAIDFFFDEEHALAYAFRWGRLWVDSHC
>NZ_CP009548.1|WP_006028811.1|2670660_2671323_+|NAD(P)H-dependent-oxidoreductase
MERTLTAFDQHRRPFIVGIGGTTRAASSTERALGFALRGAQAAGARTRLFDGPFLHTLPHYAPERRALTDAQRELIDAVRAADAIVIATPGYHGGVSGLVKNALDTLEELRADERPYLDGRAVGCIVTAYGWQAAGTVLTSLRAIVHALRGWPTPFGAAVNTLETRFETVDRCSDSKVAAQLETVGAQAAEFALAFASHRAATRVASDNALATVLEAATH
>NZ_CP009548.1|WP_162486734.1|2668626_2669835_-|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein
MTAYFPAQRGDVAMDAPKVVVDGLCKVFGSNPRQALDMLAAGATKDEVFARTGQVVGVHNVSFDVREGEIFVLMGLSGSGKSTLIRLVNRLVEPSAGKVLIDGRDVAGVRRAELTALRRTDMSMVFQSFALMPQRTVLSNAAFGLEVAGMGRKDRERRAMGVLEQVGLAQFAHKLPAELSGGMQQRVGLARALAVNPSLMIMDEAFSALDPLKRKEMQNVLLQLQKEQRRTIMFVSHDLEEALRIGSRIAIMAGGRLVQVGTPQEIIANPADDYVRAFFEGIDTSRYLTAGDLMLTGAVPTVSKLDATHVAASLNGSAEYAFVLDEARKIRGFVTRDALNGATPNVRQVESIPRDASLDHVVERCVAHPHALPVVDDDGCYCGSVDRAVLLKAITRSRGFHV
>NZ_CP009548.1|WP_006028807.1|2667731_2668634_-|choline-ABC-transporter-permease-subunit
MSELIPLGSWVDQSVHYLLDHDAKTFDAIGRAIEGLAALVEHGLQAVPMGLMMACFVGVGLWRVGWRFAIFTAASLFLIFATGFWDQTVVTLGLTLSSTIVSLVLGIPLGIWAAKSKWVAAIVRPILDLMQTMPAFVYLIPAAMLFGLGRVPGILSTVIFAMPPAVRLTSLGIRHVNREIVEAGQAFGCTPWQLLYKVQFPNALPSIMQGVNQTIMMALSMVIIASMVGAGGLGNDVLASIQRLDIGLGFESGLSVVLLAIILDRITESFGRAPGTAKAPLFSGFRQLFGPRSRSSVAQA
>NZ_CP009548.1|WP_006028806.1|2666618_2667617_-|GlxA-family-transcriptional-regulator
MTSAAAAAPAACAEPVSSAAHFGFLTLPNFSMIAFTSAVEVLRMANYVARADHYRWSIFSLDGAPVHASNGIAVRPTQPLDVDDPPDVVIVCGGIRIREAMDETVRGALGALAARAVPLGGICTGAYVLMACGLLDGYRCAVHWENLSALHAEFPQVRFADELFVVDRDRLTCTGGTAPLDLMLNLVGARLGQPLAAQVSEQFILERIRSATDPQPIPVDARVGFSRAELIEVVRLMEANIEEPLSLEELARLVRLSQRHLQRMFRIYLNVSPTHYYLTLRLKRARDLLRTTDASIARVTTICGFHSPCHFSKAYRAQFGHAPSHERRVSAR
>NZ_CP009548.1|WP_009915293.1|2665548_2666499_-|choline-ABC-transporter-substrate-binding-protein
MKRNLIAAACGLAIAAAPFASARAGDPPTCKAVRFADVGWTDIAATTGLASTMLAGLGYAPTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPMIAPFTKAGTIKVLATPNLTGAKYTLAVPDYVYQGGLKSFADIQKYADKLNGRIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAARCPNVAKFVSNLQFSTSIENHVMLPIMNKEDPNKAAAAWLKANPQSLDKWLAGVTTFDGKPGLPAVRHYLGIQ
>NZ_CP009548.1|WP_006028804.1|2665306_2665474_-|hypothetical-protein
MKAARFDETCLRRAENRTGRDRSILFCDIERPMKYRWAQAVNGAVGGMLVAIPWW
>NZ_CP009548.1|WP_006028803.1|2664257_2665256_+|hypothetical-protein
MIQLSSDIVVTPFATNLSASFDNERLPFAVDADIRQQLHALLRQATHGGSEPDLRPLQPQWPQQPLQFATTQPDDAGDPLSFVDAPDDAQNDAPDNAPPARCVASPDASMARFATQMPDASTRRPPGDNRTAQQIIDDNPLLKNLGNQSGIRDKLNQFVGGNMSNDPDQAYKAAALLTYVKSSKNREGGERPDGVVGDGKIDGFTKDGDARHGTEAGLLQDVVSGGGWQHLRETGHQLDQTSDTHVRLDGTNKDNLQWGFEQAGKYIVAVFKGIGKAVVDIVTKGRFNPVSAVLSVVKEVGTSVAKQAVEDSNLSSDAKQKANKVFGALDFF
>NZ_CP009548.1|WP_006028802.1|2663375_2664068_+|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein
MAALYDFGARKLRALYDRRLRCDAVLDTAALFPDAARFTRAWRAIRDEALSVSRDLSRIPRFHEIMREQAAISANDARDWRMFIMQAYGVRFPQNIERCPTVASILAASPDVLSASFSFLAPGKHIPPHRGPFRGILRGYLVLSMPMRANGTPAAVLKIDGRDYRLHDGQFLLWDDTFEHEVWNESDDVRIVLLLDIRRRDLPLALALLSGALIRLVRVAIRLRGGAIPV
>NZ_CP009548.1|WP_043283154.1|2680006_2680327_+|hypothetical-protein
MKHIAGMGLTTLAALAALAGCSASSGPTYTVTQTSLPGHPNAYRVACGGVFGKYDTCTKIAARVCGDRAVETLERAADYRGDGRRSEPSSLTFDCAATQNAAQSDQ
>NZ_CP009548.1|WP_006028815.1|2680584_2682381_+|hypothetical-protein
MPANPDRFADIQTQLKRGELIAAADAIDAWCTAEPASAGALACRAHWLRLLGRLDEAAAALGPALAATPPCASAWVERARLDRLAGQAERAHAAFDAAHRADPAATGWLAEWIELLHQTHRHALARPVAQALCERAPNDAQSWFLLGLTHHYAGEYAAAADAYRRAGALDPAYPMLRNNLAALHYQTGMHREALTQAEAAIRAEPDSQMAWCNGSNAWLALREPARALIAAERACALGQSYAIAQLARANALKELQRWPDALAAAAHAHRSAPDDPVMQWSLAMLQLLHGDYENGWANHEARWNGSRELGDRPRPSPQRQWRGEPLAGKTLMLWGEQGFGDALQFARFAPIVADQATRAGAQVVFACFAGLEPLFARSFAGTPMRIVRHDAPQLPTFDHHLPVGSAPLMLGVRPDTIPSAGGYLRADPARAAQWAARQPANGRLRVGLVWSGSRTHQRNPLRAIDPAACARAWRDVAGVAFHSLQIDGASDVATMRAAGLDVIDHTAELQSFDDTAAYLSSLDLVVTVCTSVAHLAGALGRPTRLLLDVNPHWVWMIDREDSLWYDSIRLRRQARYRDWTPVLDSVRGELAALAAARG
>NZ_CP009548.1|WP_006028816.1|2682396_2682858_+|YadA-C-terminal-domain-containing-protein
MSTFNRAIGPLAADLSMAGARIAPRSTGVAARSETDGALDANELNARPASMSQSLPGRPPRIDVPRAQPSGIQQAPRQTDSMARQGIAAAAAPTMLPQVEPGKTINVAAARFAGQSGIARGASAHVTNCGILKLGIGVSGQNKTFGAGYGYSW
>NZ_CP009548.1|WP_006028817.1|2682854_2684009_+|DUF2827-domain-containing-protein
MIDSIHSSSAGPRDAPGKRLAVGISLFARDGQAIWENGIHQNIAFLAMMLKQSDRIGPVYFLNGGDAKALPAGLDLGGLDVPLVQPRDVSHALDVVIEMGAQLPVDWLKYMKALGKKLVVCFVGHTYSGLCETPMFNRPSGHIFNGGPFDEVWILPKSEKIDAPLLRTLTRAPVHVVPHIWSPYFIGRRARQLEAEGLRFGYAPGRAKWRLSILEPNISVVKTSHYPMLAADEFHRAQPDAVEHLFVVNSLHMKEHATFVHFANSLDLVREHKATFEPRIDLPSFLAQHGDAVISHQWENPQNYLYYDVLYGGYPLVHNSPLLGDAGYYYPEFDSAAGGRALLHAWRHHDAHLDDYRRHADALLHSVSIDNRSNLDAYVARLFA
>NZ_CP009548.1|WP_006028818.1|2684030_2685179_+|DUF2827-domain-containing-protein
MSETTAHDVPNGGKRVVVGVSLFVRGAGQSLWENGIFQNCLLLVLLLRQSPLVAEAVMVNGGTSDADPQLMLGEWNVPLISMDEAMTRCDVLIEMSAQFNAGWIAEYRRRGGKVVTMRVGNDYVIDIERAIFDKPSGFLFSGARYDGVWTIPEFEHSCGHYLESGLRSPVTIVPHIWHPLLFDKARATLGPGLEFGYKPGKPRWRVAMFEPNICMVKTSIVPMLVAEEAYRAQPSFVEFVRVCNTLHMKEHTTFVHFARSLDIVDHGLTTFEGRFAVYEFMAAYGDAVVSHTWENAQNYLYYELLYGGYPLVHNSPYLGRAGYFYPDFDCQEGGRQLLKAFREHDANLDAYREQSRQVLDSVSIYRPENVAAYTEAIAALYR
>NZ_CP009548.1|WP_009915315.1|2685226_2685694_+|DUF4019-domain-containing-protein
MKKIVARCAAAGALLAAGALAHAQTSPSPDGVLQSAENVLKQIDEGRFDDMWKDCAAFVRSKSTAQRFADDTRRLRAPLGAVARRGWSDIMLIQFANTKDVPDGLYANVDFTTTLQGGKVVFEKLSLRRESDGQWRLVSYAPRQQQGVAPALAGQ
>NZ_CP009548.1|WP_009915317.1|2685718_2686861_-|DUF2827-domain-containing-protein
MTSPVDLNGLRIGITIGLREPNESLWINGIKQNALFLAKLLMKSSRGYRVTIVNTTGVPITDALPWDRRIFDTRSFTDMKDSLDVLIELGGQIDGEQTAYLKARGVKLVSYCCGFEYIHATQSILFGRRMWETLFINRGYDEIWAIPQIAPSSLPFLQSLRRAPGRVVPFVWDPMFLAERTRLMHERGEYRPSGKRAKRLTVMEPNHDVVKFCVYPMLIIDEAYRRDPDAIAFTHVTNADRLARDSPEFVMLMNYLEVVRASKASFVGRFDTPTFLAEHTDVVVSHQWENPLNYFYFDVCWQGYPLVHNAHLVPDIGYYYPDNDVQTGTEALMRVLREHDDDWEGYAARQRSLLRRYTSKNPTLVAEYDTLLANLVNNGR
>NZ_CP009548.1|WP_006028821.1|2686988_2688989_-|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MFDKILIANRGEIACRVAATCRRLGIASVAVYSDADAHAKHVAACDEAVHIGGAAAADSYLRIERIIDAARATGAQAIHPGYGFLSENEDFARACEDAGIVFVGPPVEAIAAMGSKAAAKALMHAAAVPLVPGYHGDDQAPALLQREADRIGYPVLLKASAGGGGKGMRVVERAADFAAALASCQREAAASFGNDRVLIEKYLQRPRHVEVQVFGDAHGNAVYLFDRDCSVQRRHQKVLEEAPAPGLAHELRQAMGEAAVAAARAVGYVGAGTVEFIMTDDAFYFMEMNTRLQVEHPVTEMVTGLDLVEWQLRVAAGEPLPLRQPELHVRGHAIEARLYAENPARGFLPSTGRLKHLRFPAGVEFDVGAAVRIDSGVREGDAITPFYDPMIAKLIVHGDTRAQALAMLGRALRECEVVGLHTNAEFLQRIVASRPFADADLDTGLIERHRDALFAPQPAPAAALGLACAALLARERAAAGAGGAASPWAALPNWRLNAGYRRTIGWRALDDDAMLEVRYLERGGVQSLEVGGIAKPFAWSRGAGPLDFDVTLGGVRASGRVHVDGDTFHVFCQGVARAFEWRNLLAHAADSTEGEGRLTAPMPGKVIAVLVEPGQKVEQGDPLIVMEAMKMEHTIGAPAAGVVAEVLYAVGDQVADGAQLLVMGQA
>NZ_CP009548.1|WP_015602552.1|2689113_2689899_-|enoyl-CoA-hydratase/isomerase-family-protein
MRYETIEVTDDGRVATVTLARPDVRNAFNETMIAELTTAFDRIDAHASLRAVVLAARGPAFCAGADLNWMKKMAGFSDDENRADARRLARMLDAVYRCAKPVIARVHGDAYAGGVGLVAACDIAIAAEDVKFCLSEARLGLIPATIAPYVVRAMGERAARRYFATAEAFDCAKAAQLGFVHERVPAGALDASVAKLAEALCANGPQAVRACKTLVRDVAGRALDAALIEQTAGWIAKTRAGAEAREGVASFLEKRTPSWRA
>NZ_CP009548.1|WP_006028823.1|2689919_2691527_-|methylcrotonoyl-CoA-carboxylase
MPIIESKLNPRSDEFRANAAALEALVADLREKIDRLALGGGQAARDKHLSRGKLLPRERIAQLLDPGTPFLELSQLAAYGMYNDDAPGAGIVTGIGRIAGRECVIVCNDATVKGGTYYPVTVKKHVRAQEIAAENRLPCVYLVDSGGANLPNQDDVFPDRDHFGRIFFNQANLSAAGIAQIAVVMGSCTAGGAYVPAMSDESIIVRNQGTIFLGGPPLVKAATGEEVSAEDLGGGDVHTRLSGVADHLAQNDAHALAIARTIVGNLGARHGASLAMREPLPPRYDAKSLYGVIPVDTRKPFDVREVIARIVDDSAFDEFKARYGTTLVTGFAHIWGHPVGIVANNGILFSESATKGAHFIELCCQRKTPLVFLQNITGFMVGRKYENEGIARHGAKMVTAVSTAKVPKFTVIIGGSFGAGNYGMCGRAFGPRFLWMWPNARISVMGGEQAASVLATVRRDGIEAKGGEWSAQDEEAFKQPIRDQYERQGHPYYASARLWDDGVIDPAQTRDVLGLGLAAAMNAPIEDTRFGVFRM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009548_1	1.2\|1211181\|21\|NZ_CP009548\|CRT	1211181-1211201	21	NZ_CP009548.1	1211089-1211109	0	1.0
NZ_CP009548_1	1.4\|1211273\|21\|NZ_CP009548\|CRT	1211273-1211293	21	NZ_CP009548.1	1211089-1211109	1	0.952

1. spacer 1.2|1211181|21|NZ_CP009548|CRT matches to position: 1211089-1211109, mismatch: 0, identity: 1.0

cggtcgaccgccgagggacca	CRISPR spacer
cggtcgaccgccgagggacca	Protospacer
*********************

2. spacer 1.4|1211273|21|NZ_CP009548|CRT matches to position: 1211089-1211109, mismatch: 1, identity: 0.952

cgatcgaccgccgagggacca	CRISPR spacer
cggtcgaccgccgagggacca	Protospacer
**.******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

624712 : 696279

Cronobacter_phage(12.5%)

holin,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009914155.1\|624712_625804_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_006029722.1\|625803_627693_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009914154.1\|627722_628304_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_006029724.1\|628290_628641_-	hypothetical protein	NA	NA	NA	NA
WP_006029725.1\|628637_629231_-	TagK domain-containing protein	NA	NA	NA	NA
WP_006029726.1\|629763_632475_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.6e-82	32.3
WP_006029727.1\|632508_633090_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_006029728.1\|633123_634623_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_006029729.1\|634739_635225_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_043283389.1\|635320_635824_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_006029731.1\|635845_637192_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_080595283.1\|637265_638591_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_045554707.1\|638620_642685_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_006029735.1\|642794_643073_-	hypothetical protein	NA	NA	NA	NA
WP_006029736.1\|643464_645381_-	hypothetical protein	NA	NA	NA	NA
WP_043283392.1\|646018_646759_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_006029739.1\|646852_647740_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006029740.1\|647838_649086_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_009914138.1\|649149_650049_+	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006029742.1\|650108_650549_-	hypothetical protein	NA	NA	NA	NA
WP_043283391.1\|652085_652922_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_006029745.1\|653027_653858_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_045554708.1\|654216_656997_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.1e-25	23.8
WP_045554709.1\|657034_658987_+	hypothetical protein	NA	NA	NA	NA
WP_080595190.1\|659061_660024_+	hypothetical protein	NA	NA	NA	NA
WP_080595167.1\|660035_660323_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_099975874.1\|660674_661430_+	MFS transporter	NA	NA	NA	NA
WP_006028471.1\|661667_662990_+\|transposase	IS5-like element ISButh4 family transposase	K4ICS3	Acidithiobacillus_phage	6.4e-61	51.4
WP_006028470.1\|663127_664276_+	porin	NA	NA	NA	NA
WP_009914131.1\|664442_664676_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_009914130.1\|664942_667588_+	amylase	NA	NA	NA	NA
WP_043282980.1\|667587_667941_+	hypothetical protein	NA	NA	NA	NA
WP_006028466.1\|668344_669595_+	ROK family protein	NA	NA	NA	NA
WP_009914123.1\|669581_671135_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-13	28.4
WP_015603444.1\|671177_672212_+	branched-chain amino acid transport system / permease component family protein	NA	NA	NA	NA
WP_009914122.1\|672288_673236_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006028462.1\|673336_674716_-	FAD-containing oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.6e-59	31.9
WP_006028461.1\|675101_676490_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.7e-14	34.1
WP_009914120.1\|676604_677630_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_006028459.1\|677730_678126_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_015603421.1\|678150_679128_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_043282978.1\|679167_681975_-	non-ribosomal peptide synthetase	NA	NA	NA	NA
WP_156436732.1\|681989_682262_+	hypothetical protein	NA	NA	NA	NA
WP_006028456.1\|682803_684012_-	transcriptional regulator	NA	NA	NA	NA
WP_006028455.1\|684124_685579_-	pyruvate kinase	NA	NA	NA	NA
WP_043282976.1\|685671_686838_-	glycerate kinase	W6LM47	Streptococcus_phage	4.5e-42	37.1
WP_006028453.1\|686919_688245_-	MFS transporter	NA	NA	NA	NA
WP_006028452.1\|688506_690900_+	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	2.3e-29	26.7
WP_144411857.1\|691894_692671_-	hypothetical protein	NA	NA	NA	NA
WP_009917547.1\|692976_693303_+	thioredoxin family protein	NA	NA	NA	NA
WP_006028448.1\|693336_693756_+	YjbQ family protein	NA	NA	NA	NA
WP_006028447.1\|694083_696279_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA

DBSCAN-SWA_2

1336102 : 1347200

Burkholderia_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006027894.1\|1336102_1337866_-	DNA methyltransferase	A9YX21	Burkholderia_phage	7.2e-185	91.8
WP_006027893.1\|1337862_1338873_-	RNA-directed DNA polymerase	H7BVN7	unidentified_phage	1.6e-40	36.4
WP_009916876.1\|1339195_1339570_-	four helix bundle protein	NA	NA	NA	NA
WP_006027891.1\|1339584_1340049_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_006027890.1\|1340079_1340442_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_006027889.1\|1340531_1341155_-	hypothetical protein	A9YX18	Burkholderia_phage	2.4e-18	90.6
WP_006027888.1\|1341151_1342918_-	AAA family ATPase	H2BD46	Pseudomonas_phage	7.9e-75	37.0
WP_009916878.1\|1342914_1343799_-	cell division protein FtsK	J7I0T4	Pseudomonas_phage	3.1e-35	35.6
WP_009916879.1\|1343829_1345110_-	hypothetical protein	A0A2I7RZ22	Vibrio_phage	5.3e-20	34.2
WP_043282918.1\|1345125_1345935_-	hypothetical protein	J7HXJ4	Pseudomonas_phage	1.5e-89	59.8
WP_006027884.1\|1345931_1346228_-	KTSC domain-containing protein	A9YWW2	Burkholderia_phage	7.6e-39	80.8
WP_009916881.1\|1346500_1346668_-	hypothetical protein	NA	NA	NA	NA
WP_006027881.1\|1346664_1347021_-	hypothetical protein	NA	NA	NA	NA
WP_006027880.1\|1347017_1347200_-	hypothetical protein	A9YWW6	Burkholderia_phage	1.9e-08	73.0

DBSCAN-SWA_3

1350372 : 1388926

Burkholderia_phage(75.0%)

terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009916889.1\|1350372_1350717_-	helix-turn-helix domain-containing protein	A9YWX7	Burkholderia_phage	1.5e-46	84.3
WP_009916890.1\|1350801_1351056_+	transcriptional regulator	A9YWX8	Burkholderia_phage	3.3e-35	86.2
WP_156436744.1\|1351052_1351505_+	hypothetical protein	NA	NA	NA	NA
WP_009916891.1\|1351813_1352188_+	hypothetical protein	A9YWX9	Burkholderia_phage	1.9e-58	87.9
WP_006027870.1\|1352184_1352406_+	hypothetical protein	A9YWY0	Burkholderia_phage	3.1e-29	83.8
WP_006027869.1\|1352459_1352624_+	hypothetical protein	NA	NA	NA	NA
WP_006027868.1\|1352620_1352890_+	hypothetical protein	NA	NA	NA	NA
WP_009916892.1\|1352886_1353747_+	hypothetical protein	A9YWY3	Burkholderia_phage	2.8e-73	51.9
WP_006027866.1\|1353743_1354220_+	hypothetical protein	Q6JIG5	Burkholderia_virus	1.7e-64	77.7
WP_043282916.1\|1354260_1355247_+	YdaU family protein	NA	NA	NA	NA
WP_009917271.1\|1355243_1355477_+	hypothetical protein	NA	NA	NA	NA
WP_006027863.1\|1355473_1355734_+	hypothetical protein	NA	NA	NA	NA
WP_006027861.1\|1355903_1356374_+	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	9.1e-63	75.6
WP_006027860.1\|1356408_1356588_+	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	6.0e-15	79.6
WP_006027859.1\|1356597_1356927_+	hypothetical protein	A9YWZ0	Burkholderia_phage	1.4e-25	66.7
WP_006027858.1\|1356923_1357517_+	hypothetical protein	A9YWZ1	Burkholderia_phage	2.5e-102	94.7
WP_006027857.1\|1358038_1358704_+	hypothetical protein	A9YWZ4	Burkholderia_phage	1.3e-118	90.5
WP_006027856.1\|1358722_1359202_+	DUF2280 domain-containing protein	A9YWZ5	Burkholderia_phage	6.5e-56	77.0
WP_009917273.1\|1359152_1360706_+\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	3.2e-112	45.4
WP_006027854.1\|1360726_1362196_+	DUF1073 domain-containing protein	A9YWZ7	Burkholderia_phage	3.2e-263	94.2
WP_006027853.1\|1362192_1362948_+\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	1.2e-133	96.8
WP_006027852.1\|1362949_1363234_+	hypothetical protein	A9YWZ9	Burkholderia_phage	8.3e-51	92.6
WP_006027851.1\|1363414_1364872_+	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	3.9e-205	85.4
WP_009917274.1\|1364881_1365388_+	hypothetical protein	NA	NA	NA	NA
WP_009917275.1\|1365457_1366549_+	DUF2184 domain-containing protein	A9YX23	Burkholderia_phage	4.3e-156	96.0
WP_043282997.1\|1366559_1367027_+	hypothetical protein	A9YX24	Burkholderia_phage	7.5e-25	84.5
WP_009917276.1\|1367090_1367474_+	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	1.4e-64	98.4
WP_006027846.1\|1367502_1367982_+	hypothetical protein	A9YX26	Burkholderia_phage	1.6e-78	96.2
WP_009917277.1\|1368043_1368415_+	hypothetical protein	A9YX28	Burkholderia_phage	2.1e-62	92.7
WP_006027844.1\|1368419_1369010_+	hypothetical protein	A9YX29	Burkholderia_phage	4.3e-102	93.4
WP_006027843.1\|1369019_1370495_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	2.6e-111	48.3
WP_006027842.1\|1370510_1370951_+	DUF3277 family protein	A0A0P0IKY2	Acinetobacter_phage	1.1e-41	58.9
WP_006027841.1\|1370953_1371514_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	1.1e-17	35.7
WP_006027840.1\|1371697_1373824_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.5e-40	36.6
WP_006027839.1\|1373820_1374396_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	9.6e-22	39.2
WP_006027838.1\|1374395_1374713_+	hypothetical protein	NA	NA	NA	NA
WP_006027837.1\|1374709_1375678_+	hypothetical protein	A9YX04	Burkholderia_phage	2.3e-145	89.0
WP_006027836.1\|1375674_1376046_-	hypothetical protein	A9YX05	Burkholderia_phage	1.2e-57	90.2
WP_043282915.1\|1376056_1376809_+	phage protein	A9YX06	Burkholderia_phage	1.8e-121	91.2
WP_006027834.1\|1376817_1377171_+	hypothetical protein	A9YX11	Burkholderia_phage	5.6e-57	95.7
WP_006027833.1\|1377167_1378349_+	hypothetical protein	A9YX12	Burkholderia_phage	2.0e-199	93.4
WP_006027832.1\|1378348_1379011_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	4.1e-117	92.3
WP_144411866.1\|1379075_1380929_+	hypothetical protein	A9YX14	Burkholderia_phage	1.5e-71	57.8
WP_043282914.1\|1380925_1381108_+	hypothetical protein	NA	NA	NA	NA
WP_080595168.1\|1381108_1381879_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_006027829.1\|1381998_1382271_-	hypothetical protein	NA	NA	NA	NA
WP_004532301.1\|1382440_1382623_+	hypothetical protein	NA	NA	NA	NA
WP_043282913.1\|1382615_1383113_+	lysozyme	Q3HQU9	Burkholderia_phage	1.2e-84	93.9
WP_006027827.1\|1383109_1383658_+	hypothetical protein	NA	NA	NA	NA
WP_006027826.1\|1383654_1384131_+	DUF2514 family protein	Q6J1Q4	Burkholderia_virus	3.8e-56	80.6
WP_009917287.1\|1384166_1384364_+	hypothetical protein	Q3HQV3	Burkholderia_phage	2.3e-23	73.8
WP_006027825.1\|1384712_1384997_-	hypothetical protein	NA	NA	NA	NA
WP_006027824.1\|1385394_1386144_-	TIGR00730 family Rossman fold protein	A0A1D8KUT5	Synechococcus_phage	9.6e-22	37.8
WP_006027823.1\|1386145_1388926_+	DNA polymerase I	A0A142F1Q9	Bacillus_phage	1.1e-70	31.8

DBSCAN-SWA_4

1571550 : 1659138

Stx2-converting_phage(25.0%)

holin,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085954781.1\|1571550_1572367_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.0e-08	36.4
WP_009917387.1\|1573277_1573682_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_043283433.1\|1573678_1573969_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.0e-32	68.8
WP_006029858.1\|1575464_1575680_-	hypothetical protein	NA	NA	NA	NA
WP_043283419.1\|1575676_1576477_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	7.3e-36	37.4
WP_043283420.1\|1576436_1577966_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-27	30.7
WP_043283410.1\|1578735_1579443_-	response regulator	NA	NA	NA	NA
WP_144411869.1\|1579636_1582279_-	response regulator	A0A1V0SGX0	Hokovirus	7.5e-37	38.4
WP_006029833.1\|1584738_1586355_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_099975922.1\|1587952_1589899_+	hypothetical protein	NA	NA	NA	NA
WP_006029831.1\|1590103_1594726_+	hypothetical protein	NA	NA	NA	NA
WP_006029830.1\|1594756_1597645_+	hypothetical protein	NA	NA	NA	NA
WP_144411870.1\|1597746_1600962_+	hypothetical protein	NA	NA	NA	NA
WP_144411871.1\|1600982_1603010_+	hypothetical protein	NA	NA	NA	NA
WP_006029827.1\|1603615_1605307_+	hypothetical protein	NA	NA	NA	NA
WP_009917408.1\|1605908_1607327_+	hypothetical protein	NA	NA	NA	NA
WP_009917406.1\|1607626_1608088_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_043283406.1\|1608845_1609880_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_043283433.1\|1610722_1611013_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.0e-32	68.8
WP_009917387.1\|1611009_1611414_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_006029793.1\|1612261_1614724_+	hypothetical protein	NA	NA	NA	NA
WP_045554727.1\|1614879_1616109_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	5.8e-101	48.9
WP_144411872.1\|1616161_1617820_+	hypothetical protein	NA	NA	NA	NA
WP_045554788.1\|1618095_1620003_+	hypothetical protein	NA	NA	NA	NA
WP_006029789.1\|1621867_1622965_-	chitin-binding protein	Q0N444	Clanis_bilineata_nucleopolyhedrovirus	1.5e-23	33.3
WP_006029788.1\|1623404_1623896_-	hypothetical protein	NA	NA	NA	NA
WP_006029787.1\|1623966_1624590_-	nitroreductase	NA	NA	NA	NA
WP_144411873.1\|1624579_1625206_+	hypothetical protein	NA	NA	NA	NA
WP_015603545.1\|1625228_1626644_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_009914420.1\|1626736_1627678_+	alpha-E domain-containing protein	NA	NA	NA	NA
WP_006029784.1\|1627686_1628652_+	transglutaminase family protein	NA	NA	NA	NA
WP_006029783.1\|1628765_1632182_+	transglutaminase family protein	NA	NA	NA	NA
WP_045554729.1\|1632413_1635065_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_015603888.1\|1635055_1636084_+	transglutaminase family protein	NA	NA	NA	NA
WP_009914430.1\|1636032_1637613_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_009914432.1\|1637718_1638924_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_006029778.1\|1639080_1639812_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_009914434.1\|1639808_1640621_-	DinB family protein	NA	NA	NA	NA
WP_009914437.1\|1641340_1642414_-	FUSC family protein	NA	NA	NA	NA
WP_006029774.1\|1642664_1643732_-	2-aminoethylphosphonate aminotransferase	NA	NA	NA	NA
WP_006029773.1\|1643746_1644928_-	phosphonopyruvate decarboxylase	NA	NA	NA	NA
WP_006029772.1\|1644924_1646613_-	phosphoenolpyruvate mutase	NA	NA	NA	NA
WP_006029771.1\|1646609_1647377_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_006029770.1\|1647418_1648420_-	HpnL family protein	NA	NA	NA	NA
WP_009914447.1\|1648416_1649190_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_006029768.1\|1649186_1649876_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_006029767.1\|1650239_1651754_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_006029766.1\|1653067_1653994_+	hypothetical protein	NA	NA	NA	NA
WP_009914448.1\|1654027_1654579_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_006029764.1\|1654581_1656084_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|1656227_1656755_+	hypothetical protein	NA	NA	NA	NA
WP_006029763.1\|1656833_1657265_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_006029762.1\|1657278_1659138_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_5

2255350 : 2324247

Burkholderia_virus(52.17%)

capsid,transposase,portal,holin,head,tail,protease,terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043282853.1\|2255350_2256760_+	DNA cytosine methyltransferase	Q6V7R9	Burkholderia_virus	8.6e-64	37.9
WP_045554745.1\|2258659_2258866_+	DNA methyltransferase	A4JWW1	Burkholderia_virus	1.4e-31	97.1
WP_006027269.1\|2258865_2260665_+	replication endonuclease	A4JWW0	Burkholderia_virus	0.0e+00	91.3
WP_006027268.1\|2260680_2260947_+	ogr/Delta-like zinc finger family protein	A4JWV9	Burkholderia_virus	2.3e-42	96.5
WP_006027267.1\|2260943_2261150_+	ogr/Delta-like zinc finger family protein	A4JWV8	Burkholderia_virus	5.6e-33	98.5
WP_009914986.1\|2261239_2261893_+	AAA family ATPase	A4JWV7	Burkholderia_virus	5.4e-114	100.0
WP_009914987.1\|2262126_2262249_+	hypothetical protein	A4JWV6	Burkholderia_virus	5.0e-13	97.5
WP_006027265.1\|2262351_2262885_+	hypothetical protein	A4JWV5	Burkholderia_virus	7.9e-95	97.7
WP_006027264.1\|2262881_2263646_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	7.8e-128	96.1
WP_075644823.1\|2263626_2264748_+	DUF3396 domain-containing protein	A4JWV3	Burkholderia_virus	5.5e-215	97.9
WP_006027262.1\|2265412_2265709_+	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	5.6e-50	99.0
WP_004202809.1\|2265711_2266068_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_006027261.1\|2266111_2267167_-\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	7.0e-204	98.3
WP_006027260.1\|2267163_2268933_-\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	0.0e+00	97.3
WP_006027259.1\|2269076_2269886_+\|capsid	GPO family capsid scaffolding protein	K4PAW2	Burkholderia_phage	2.6e-142	95.9
WP_006027258.1\|2269930_2270941_+\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	4.1e-177	93.5
WP_006027257.1\|2270937_2271627_+\|terminase	terminase endonuclease subunit	A4JWP8	Burkholderia_virus	1.7e-113	95.6
WP_006027256.1\|2271726_2272206_+\|head	head completion/stabilization protein	K4NZV5	Burkholderia_phage	2.7e-78	96.9
WP_009914992.1\|2272205_2272457_+	hypothetical protein	K4NXI9	Burkholderia_phage	4.9e-39	96.4
WP_004524438.1\|2272453_2272660_+\|tail	tail protein	K4PAW7	Burkholderia_phage	2.4e-31	100.0
WP_004553021.1\|2272674_2273019_+	membrane protein	K4NZQ3	Burkholderia_phage	6.5e-50	99.1
WP_004524440.1\|2273020_2273293_+\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_006027254.1\|2273289_2274102_+	DUF3380 domain-containing protein	A4JWZ0	Burkholderia_virus	2.5e-148	97.8
WP_009914993.1\|2274098_2274539_+	hypothetical protein	K4NXJ2	Burkholderia_phage	2.7e-69	97.3
WP_006027252.1\|2274643_2275060_+\|tail	phage tail protein	A4JWT7	Burkholderia_virus	1.6e-71	99.3
WP_006027251.1\|2275056_2275524_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	2.5e-76	97.4
WP_043282852.1\|2276118_2276880_-	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	4.4e-139	94.8
WP_006027249.1\|2277053_2277734_+\|plate	phage baseplate assembly protein V	K4NXJ5	Burkholderia_phage	1.9e-117	95.1
WP_043282752.1\|2277730_2278093_+\|plate	baseplate assembly protein	K4PAX6	Burkholderia_phage	3.6e-59	95.0
WP_080595128.1\|2278588_2278993_+\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	3.8e-65	97.0
WP_043282751.1\|2278985_2279540_+\|tail	phage tail protein I	A4JWT0	Burkholderia_virus	3.3e-96	96.2
WP_006027245.1\|2279550_2281914_+	hypothetical protein	Q45YG3	Burkholderia_virus	0.0e+00	89.7
WP_006027244.1\|2281930_2282602_+\|tail	tail assembly chaperone	A4JWS8	Burkholderia_virus	5.6e-106	97.3
WP_006027243.1\|2282657_2283830_+\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	1.3e-219	98.2
WP_014696837.1\|2283845_2284355_+\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	3.2e-93	98.8
WP_004531064.1\|2284412_2284757_+\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	1.0e-55	100.0
WP_009914998.1\|2284765_2284882_+\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	8.3e-10	86.8
WP_006027241.1\|2284884_2287764_+	hypothetical protein	A4JWS3	Burkholderia_virus	0.0e+00	77.1
WP_009914999.1\|2287781_2288207_+\|tail	phage tail protein	A4JWS2	Burkholderia_virus	3.3e-72	100.0
WP_009915000.1\|2288206_2289307_+	phage late control D family protein	K4PAY4	Burkholderia_phage	1.6e-198	97.5
WP_006027238.1\|2289379_2289598_-	hypothetical protein	NA	NA	NA	NA
WP_009915001.1\|2289678_2289999_-	hypothetical protein	NA	NA	NA	NA
WP_045554746.1\|2291250_2292573_-\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	8.3e-61	51.0
WP_009915007.1\|2293011_2293494_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_006027235.1\|2294209_2294407_+	hypothetical protein	NA	NA	NA	NA
WP_006027234.1\|2294595_2294925_-	H-NS histone family protein	NA	NA	NA	NA
WP_006027233.1\|2294938_2295454_-	ProQ/FinO family protein	NA	NA	NA	NA
WP_006027232.1\|2295749_2296514_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_006027231.1\|2296845_2297418_+	DUF2760 domain-containing protein	NA	NA	NA	NA
WP_006027230.1\|2297414_2299262_+	Hsp70 family protein	NA	NA	NA	NA
WP_006027229.1\|2299265_2302091_+	hsp70 family protein	A0A2H4UU19	Bodo_saltans_virus	4.7e-05	24.8
WP_009915016.1\|2302240_2303470_-	hypothetical protein	S4VS02	Pandoravirus	1.6e-111	54.6
WP_009915017.1\|2303612_2303867_-	hypothetical protein	NA	NA	NA	NA
WP_006027226.1\|2304594_2307108_-	cation-translocating P-type ATPase	M1HM40	Paramecium_bursaria_Chlorella_virus	2.8e-57	28.5
WP_041861909.1\|2308250_2309096_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_043282847.1\|2309166_2310609_-	thiamine pyridinylase	NA	NA	NA	NA
WP_006027222.1\|2310674_2311475_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_006027221.1\|2313127_2313868_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_006027220.1\|2313883_2314873_-	thymidylate synthase	NA	NA	NA	NA
WP_006027219.1\|2314874_2315330_-	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_006027218.1\|2315326_2315818_-	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	3.3e-15	42.9
WP_009915029.1\|2316558_2317197_-	LysE family translocator	NA	NA	NA	NA
WP_144411889.1\|2319528_2319873_+	hypothetical protein	NA	NA	NA	NA
WP_006027214.1\|2319904_2321395_+	arginine-ornithine antiporter	NA	NA	NA	NA
WP_006027213.1\|2321580_2322186_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_009915032.1\|2322264_2324247_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	1.1e-104	45.7

DBSCAN-SWA_6

2600497 : 2648815

Catovirus(16.67%)

holin,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006028749.1\|2600497_2602195_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.3e-50	29.3
WP_006028750.1\|2603170_2606542_+	hypothetical protein	NA	NA	NA	NA
WP_043283131.1\|2606727_2608155_+	MFS transporter	NA	NA	NA	NA
WP_006028752.1\|2608218_2609697_-	PAS domain-containing protein	NA	NA	NA	NA
WP_006028753.1\|2609693_2610146_-	response regulator	NA	NA	NA	NA
WP_043283174.1\|2610171_2612322_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.2e-18	25.6
WP_006028755.1\|2612796_2613282_-	peroxiredoxin	NA	NA	NA	NA
WP_006028756.1\|2613321_2614254_-	2-hydroxyacid dehydrogenase	A0A285PXZ1	Cedratvirus	1.7e-20	33.6
WP_006028757.1\|2614365_2614626_-	hypothetical protein	NA	NA	NA	NA
WP_015603514.1\|2615497_2616133_-	sarcosine oxidase gamma subunit	NA	NA	NA	NA
WP_006028760.1\|2616122_2619131_-	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA
WP_009915278.1\|2619127_2619421_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_009915279.1\|2619601_2620846_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_006028763.1\|2620862_2622248_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_006028764.1\|2622537_2623683_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_006028765.1\|2623694_2623880_-	hypothetical protein	NA	NA	NA	NA
WP_009915280.1\|2623958_2624660_-	YceH family protein	NA	NA	NA	NA
WP_009915282.1\|2624844_2625582_-	glutathione S-transferase	NA	NA	NA	NA
WP_006028768.1\|2626283_2627291_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_006028769.1\|2627620_2627890_+	hypothetical protein	NA	NA	NA	NA
WP_006028770.1\|2628104_2628494_+	hypothetical protein	NA	NA	NA	NA
WP_009915283.1\|2628516_2629998_+\|tail	phage tail sheath family protein	A0A1J0GW47	Streptomyces_phage	3.3e-34	30.4
WP_006028772.1\|2630031_2630556_+\|tail	phage tail protein	NA	NA	NA	NA
WP_043283141.1\|2630599_2631337_+	hypothetical protein	NA	NA	NA	NA
WP_144411903.1\|2631336_2632167_+	hypothetical protein	NA	NA	NA	NA
WP_045554756.1\|2632163_2633513_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_006028777.1\|2633509_2635438_+	ATP-binding protein	A0A2D2W2C3	Stenotrophomonas_phage	8.2e-09	34.3
WP_006028778.1\|2635434_2635866_+	hypothetical protein	NA	NA	NA	NA
WP_052687557.1\|2635862_2637125_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_156436738.1\|2637121_2637295_+	hypothetical protein	NA	NA	NA	NA
WP_006028781.1\|2637291_2640096_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_006028782.1\|2640092_2640752_+	hypothetical protein	NA	NA	NA	NA
WP_006028783.1\|2640849_2641200_+\|plate	baseplate wedge protein 53	NA	NA	NA	NA
WP_006028784.1\|2641213_2642338_+	hypothetical protein	NA	NA	NA	NA
WP_006028785.1\|2642334_2642847_+	hypothetical protein	NA	NA	NA	NA
WP_015602894.1\|2642849_2643167_+	hypothetical protein	NA	NA	NA	NA
WP_006028787.1\|2643177_2643546_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_043283147.1\|2643542_2646077_+\|plate	putative baseplate assembly protein	A0A1Q1PVP2	Phage_DP-2017a	2.9e-09	21.0
WP_043283148.1\|2646073_2648815_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA

DBSCAN-SWA_7

2744820 : 2808138

Ralstonia_phage(60.0%)

transposase,integrase,plate

attL 2745042:2745058|attR 2811629:2811645

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006028869.1\|2744820_2745291_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
2745042:2745058	attL	NA	NA	NA	NA
WP_006028870.1\|2745319_2747071_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_043283161.1\|2747058_2748081_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_006028872.1\|2748067_2750896_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.1e-83	31.9
WP_006028873.1\|2750923_2753908_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.5e-22	24.5
WP_006028874.1\|2753933_2756597_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_006028875.1\|2756614_2757679_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_043283179.1\|2757675_2758428_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_006028877.1\|2758455_2758848_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_006028878.1\|2758857_2759634_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_043283162.1\|2759666_2761064_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_006028880.1\|2761060_2761747_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_043283181.1\|2761758_2765622_+	type VI secretion system protein ImpL	NA	NA	NA	NA
WP_006028882.1\|2765801_2766944_+	peptidase	NA	NA	NA	NA
WP_006028883.1\|2766934_2767990_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_006028884.1\|2768142_2768586_-	hypothetical protein	NA	NA	NA	NA
WP_006028885.1\|2768703_2769348_-	response regulator transcription factor	NA	NA	NA	NA
WP_006028886.1\|2769622_2770075_-	chaperone SicP	NA	NA	NA	NA
WP_006028887.1\|2770071_2771625_-	autophagy evasion T3SS effector BopA	NA	NA	NA	NA
WP_009915423.1\|2772017_2772803_+	type III secretion system protein	NA	NA	NA	NA
WP_006028889.1\|2773176_2773731_-	lytic transglycosylase domain-containing protein	A0A0K2QQJ4	Ralstonia_phage	5.2e-17	39.9
WP_006028890.1\|2773727_2774009_-	acyl carrier protein	NA	NA	NA	NA
WP_006028891.1\|2774005_2776315_-	hypothetical protein	NA	NA	NA	NA
WP_006028892.1\|2776428_2777364_-	type III secretion system needle tip protein SctA	NA	NA	NA	NA
WP_009915432.1\|2777425_2777716_-	H-NS histone family protein	NA	NA	NA	NA
WP_006028894.1\|2777849_2779100_-	IpaC/SipC family type III secretion system effector	NA	NA	NA	NA
WP_009915437.1\|2779141_2781025_-	type III secretion system translocon subunit BipB	NA	NA	NA	NA
WP_006028896.1\|2781095_2781611_-	type III secretion system translocator chaperone SicA	NA	NA	NA	NA
WP_006028897.1\|2781736_2782837_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA
WP_006028898.1\|2782840_2783611_-	type III secretion system export apparatus protein SctT	NA	NA	NA	NA
WP_004187417.1\|2783629_2783884_-	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA
WP_006028899.1\|2783917_2784607_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_006028900.1\|2784596_2785571_-	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA
WP_006028901.1\|2785567_2786809_-	hypothetical protein	NA	NA	NA	NA
WP_006028902.1\|2786786_2787251_-	hypothetical protein	NA	NA	NA	NA
WP_006028903.1\|2787247_2788576_-	FliI/YscN family ATPase	NA	NA	NA	NA
WP_009915457.1\|2788572_2788980_-	hypothetical protein	NA	NA	NA	NA
WP_006028905.1\|2788991_2791064_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_006028906.1\|2791066_2792242_-	type III secretion system gatekeeper subunit SctW	NA	NA	NA	NA
WP_006028907.1\|2792238_2794122_-	type III secretion system outer membrane ring subunit SctC	NA	NA	NA	NA
WP_041862113.1\|2794135_2794801_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009915465.1\|2795287_2796565_+	PrgH/EprH family type III secretion apparatus protein	NA	NA	NA	NA
WP_009915466.1\|2796561_2796831_+	EscF/YscF/HrpA family type III secretion system needle major subunit	NA	NA	NA	NA
WP_006028911.1\|2796890_2797193_+	type III secretion system inner rod subunit SctI	NA	NA	NA	NA
WP_006028912.1\|2797197_2798100_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA
WP_006028913.1\|2798096_2798684_+	type III secretion apparatus protein OrgA/MxiK	NA	NA	NA	NA
WP_006028914.1\|2798652_2799327_+	type III secretion system stator protein SctL	NA	NA	NA	NA
WP_043283163.1\|2799289_2799490_+	hypothetical protein	NA	NA	NA	NA
WP_043283164.1\|2800060_2800972_+	transcriptional regulator	NA	NA	NA	NA
WP_006028917.1\|2800986_2801424_+	hypothetical protein	NA	NA	NA	NA
WP_009915478.1\|2801405_2801654_+	hypothetical protein	NA	NA	NA	NA
WP_144411896.1\|2801680_2801917_-	hypothetical protein	NA	NA	NA	NA
WP_009915479.1\|2802109_2803807_+	M4 family metallopeptidase	NA	NA	NA	NA
WP_085954773.1\|2804070_2804682_+	MFS transporter	NA	NA	NA	NA
WP_043283165.1\|2804824_2806138_+\|integrase	integrase family protein	A0A221SAN4	Ralstonia_phage	5.1e-10	23.5
WP_045554808.1\|2806130_2807000_+	hypothetical protein	NA	NA	NA	NA
WP_009917513.1\|2807100_2808138_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.6e-128	63.7
2811629:2811645	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009549

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009548

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection