CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP009320	Burkholderia gladioli strain ATCC 10248 plasmid 2, complete sequence	0 crisprs	NA	0	0
NZ_CP009319	Burkholderia gladioli strain ATCC 10248 plasmid 3, complete sequence	1 crisprs	NA	0	2
NZ_CP009322	Burkholderia gladioli strain ATCC 10248 chromosome 2, complete sequence	0 crisprs	cas3,csa3,DinG,WYL	0	1
NZ_CP009323	Burkholderia gladioli strain ATCC 10248 chromosome 1, complete sequence	3 crisprs	WYL,cas3,DEDDh,csa3,PD-DExK,DinG	0	10
NZ_CP009321	Burkholderia gladioli strain ATCC 10248 plasmid 1, complete sequence	1 crisprs	NA	2	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009319_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009319_1

7268-7332

Orphan

Consensus_repeat	Method
CCCGAAAAACGCCCGACTACCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009319_1

>merge|NZ_CP009319|1|7268-7332|CRISPRCasFinder
CCCGAAAAACGCCCGACTACCCCGGAATTTGTCAGATACGCCCCGAAAAACGCCCGACTACCCCG

>NZ_CP009319|1|1|7268-7332|CRISPRCasFinder
CCCGAAAAACGCCCGACTACCCCG	GAATTTGTCAGATACGC
CCCGAAAAACGCCCGACTACCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009319.1\|WP_042286935.1\|5750_6308_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009319.1\|WP_111946519.1\|9116_9368_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379946
NZ_CP009319.1\|WP_042286940.1\|4657_4903_-\|toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|310261
NZ_CP009319.1\|WP_052409306.1\|8101_9052_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP009319.1\|WP_042286924.1\|11611_12145_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
NZ_CP009319.1\|WP_042286929.1\|9726_10872_-\|DUF3396-domain-containing-protein	unknown	unknown	gnl\|CDD\|371775
NZ_CP009319.1\|WP_000735441.1\|2646_2922_-\|mercury-resistance-system-periplasmic-binding-protein-MerP	unknown	unknown	gnl\|CDD\|131107
NZ_CP009319.1\|WP_000429838.1\|3359_3794_+\|Hg(II)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184302
NZ_CP009319.1\|WP_000654684.1\|2398_2644_-\|mercury-resistance-system-transport-protein-MerF	unknown	unknown	gnl\|CDD\|371528
NZ_CP009319.1\|WP_042286932.1\|6383_7175_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP009319.1\|WP_042286921.1\|12959_13262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009319.1\|WP_042286918.1\|13833_14142_+\|MobB-mobilization-protein	unknown	unknown	gnl\|CDD\|184361
NZ_CP009319.1\|WP_120513444.1\|9448_9730_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237756
NZ_CP009319.1\|WP_042286926.1\|10883_11615_-\|VRR-NUC-domain-containing-protein	unknown	unknown	gnl\|CDD\|214959
NZ_CP009319.1\|WP_052409305.1\|12181_12841_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009319.1\|WP_042286962.1\|4025_4586_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP009319.1\|WP_001294667.1\|2937_3288_-\|mercuric-ion-transporter-MerT	unknown	unknown	gnl\|CDD\|184301
NZ_CP009319.1\|WP_042286937.1\|4937_5585_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NZ_CP009319.1\|WP_000136268.1\|755_2402_-\|mercury(II)-reductase	unknown	unknown	gnl\|CDD\|184298
NZ_CP009319.1\|WP_144417590.1\|13258_13759_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009319.1\|WP_111946519.1\|9116_9368_-\|hypothetical-protein	gnl\|CDD\|379946	pfam17207, MCM_OB, MCM OB domain. This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif.	0.00170552
NZ_CP009319.1\|WP_042286940.1\|4657_4903_-\|toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	0.000247729
NZ_CP009319.1\|WP_052409306.1\|8101_9052_+\|DNA-binding-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.33602e-08
NZ_CP009319.1\|WP_042286924.1\|11611_12145_-\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	1.48182e-31
NZ_CP009319.1\|WP_042286929.1\|9726_10872_-\|DUF3396-domain-containing-protein	gnl\|CDD\|371775	pfam11876, DUF3396, Protein of unknown function (DUF3396). This family of proteins are functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.	3.31418e-56
NZ_CP009319.1\|WP_000735441.1\|2646_2922_-\|mercury-resistance-system-periplasmic-binding-protein-MerP	gnl\|CDD\|131107	TIGR02052, periplasmic_mercuric_ion_binding_protein, mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403). [Cellular processes, Detoxification].	3.24034e-32
NZ_CP009319.1\|WP_042286962.1\|4025_4586_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	3.80261e-53
NZ_CP009319.1\|WP_000654684.1\|2398_2644_-\|mercury-resistance-system-transport-protein-MerF	gnl\|CDD\|371528	pfam11431, Transport_MerF, Membrane transport protein MerF. The mercury transport membrane protein, MerF has a core helix-loop-helix domain. It has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm.	1.91886e-19
NZ_CP009319.1\|WP_042286932.1\|6383_7175_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	7.03984e-49
NZ_CP009319.1\|WP_000429838.1\|3359_3794_+\|Hg(II)-responsive-transcriptional-regulator	gnl\|CDD\|184302	PRK13752, PRK13752, mercuric resistance operon transcriptional regulator MerR.	4.67314e-104
NZ_CP009319.1\|WP_042286918.1\|13833_14142_+\|MobB-mobilization-protein	gnl\|CDD\|184361	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ.	0.000157247
NZ_CP009319.1\|WP_120513444.1\|9448_9730_-\|hypothetical-protein	gnl\|CDD\|237756	PRK14559, PRK14559, serine/threonine phosphatase.	0.00137269
NZ_CP009319.1\|WP_042286926.1\|10883_11615_-\|VRR-NUC-domain-containing-protein	gnl\|CDD\|214959	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.	4.71807e-10
NZ_CP009319.1\|WP_001294667.1\|2937_3288_-\|mercuric-ion-transporter-MerT	gnl\|CDD\|184301	PRK13751, PRK13751, putative mercuric transport protein; Provisional.	4.38988e-75
NZ_CP009319.1\|WP_042286937.1\|4937_5585_-\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	7.82989e-33
NZ_CP009319.1\|WP_000136268.1\|755_2402_-\|mercury(II)-reductase	gnl\|CDD\|184298	PRK13748, PRK13748, putative mercuric reductase; Provisional.	0

>NZ_CP009319.1|WP_042286932.1|6383_7175_-|replication-initiation-protein
MADLAKLPDPDTRERSVTIKNELVRRIQRMKLSEKRLLALAIAKCNPKTKMLKDRAMRLDPATGAAPGWTIRVTAKEFIEAYPHIEARHAYSELKKAAEDLFECRVEWDEDVISRGKKETKRRSVRWIYEKADTTTAGWVDLKFSPSIAPYLLGIESEFTKYKLRHAADLRSIYSWRLLEIIAQYRDTGVAAILYDEFCQAMGAPDSCVKDSGQLRRRVIEPAVKELQEKNSLAIEWEPVKPAGRKVASFLFKFKPDPQGRLF
>NZ_CP009319.1|WP_042286935.1|5750_6308_+|hypothetical-protein
MKLTDFYIGLEFLGPAGFCWRCTDVGTRTIAAIRLEHEDPAWYRGPPYVVKEEIFDEREIERCHLTEEEAILASIEEADTSGHPGYPDEVANKMMRARLEESGTRYPHRGVLRFDRLAVDGELLHPYAARGDSERWIVLLYLPFQQAFDEMPELDFIALPTATAADVRARADRPSAAGSANTQLI
>NZ_CP009319.1|WP_042286937.1|4937_5585_-|AAA-family-ATPase
MIVLVGGEKGGVGKSTLASNLAVHLAHHQVDVVLVDTDGQATCARFIERRDEAAIQPSVPCVQRTGDVAATLRDLVRRYQVIVVDAGGRDSRELRTALAVANLFLTPIRASQADLETLPKVNELIGLARGLNPDLKAAAVLSMAPSNPVIREVEDARELLAQFDQIELADTVIRDRKVYRDALLAGRGVIELDNSQARAEIQLLAQEFFELEPSA
>NZ_CP009319.1|WP_042286940.1|4657_4903_-|toxin-antitoxin-system-HicB-family-antitoxin
MSKFKIAAKSGSHPSSEPMTHAEFAAGAAMVQSQAGNRPAKPIRLNLDLDPDLHRRLKVRAAEAGISIAELVRGLITRELV
>NZ_CP009319.1|WP_042286962.1|4025_4586_+|recombinase-family-protein
MLIGYARVSTDDQDLRNQRDELHAAGCSRIFAEKITGTHAKRPELARMLDHLRAGDVVMVTRLDRLARSTRDLLDIAERLQAVAAGLRSLSEPWADTTSPAGRMVLTVFAGIAEFERSLIIDRTRRGRDAAKARGVQFGRRPTLTVGQIEHARELLADGRTASDTAKLLKVHRATLYRALRGQESS
>NZ_CP009319.1|WP_000429838.1|3359_3794_+|Hg(II)-responsive-transcriptional-regulator
MENNLENLTIGVFARTAGVNVETIRFYQRKGLLPEPDKPYGSIRRYGETDVTRVRFVKSAQRLGFSLDEIAELLRLEDGTHCEEASSLAEHKLKDVRERMADLARMEAVLSDLVCACHARKGNVSCPLIASLQGKKEPRSADAV
>NZ_CP009319.1|WP_001294667.1|2937_3288_-|mercuric-ion-transporter-MerT
MSEPQNGRGALFTGGLAAILASACCLGPLVLIALGFSGAWIGNLTVLEPYRPIFIGVALVALFFAWRRIYRPSAACKPGEVCAIPQVRATYKLIFWGVAVLVLVALGFPYVVPFFY
>NZ_CP009319.1|WP_000735441.1|2646_2922_-|mercury-resistance-system-periplasmic-binding-protein-MerP
MKKLLSALALAAVVAPVWAATQTVTLSVPGMTCSACPITVKKAISKVDGVSKVDVTFETREAVVTFDDAKTSVQKLTKATEDAGYPSSVKN
>NZ_CP009319.1|WP_000654684.1|2398_2644_-|mercury-resistance-system-transport-protein-MerF
MKDPKTLLRVSIIGTTLVALCCFTPVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKRQADACCTPKFNGVKK
>NZ_CP009319.1|WP_000136268.1|755_2402_-|mercury(II)-reductase
MTEITVNGMTCTSCATHVKDALEKIPGVNAAVVSYPESRAQVMADTAVSHNQLLAAIAALGYQGSIRVGDFKDEPKIRDALEGAGLHIAIIGSGGAAMAAALKAVEQGATVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPAIDRSKLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQSLVVRLNEGGEREVTFDRCLVATGASPAVPPIPGLKESPYWTSTEALVSDTIPARLAVIGSSVVALELAQAFARLGSQVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVNGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALNLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAVLAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNKDVKQLSCCAG
>NZ_CP009319.1|WP_052409306.1|8101_9052_+|DNA-binding-protein
MGREANITTEQVDAIADAMKAEGVKPTLRGVRERLGTGSLGTVAKLLQRWKAGQERQPNAALAVPPALQRAIVDWMDQELTAARATLEAELADQQQAAADLASENERQGELIADRDAELEALSIDKAAAEGKATQLADDLDAAREEAAHERQAAEQARTELAKALLRLEAMPRLEADLAAVRAELDRERQARVAADQSVAVLAAQKDDLSARLADAGSRRERAEEALSTQQQRTEKLAAELADTRASLQATEARAKAFEREAATATADAERARSDAKSAGEQAASLRGQLEAVRSATPAPAPEPTQRRAGTKRAGQ
>NZ_CP009319.1|WP_111946519.1|9116_9368_-|hypothetical-protein
MKVYQCRECGNTLSKTAKECGNPSCKSSDPFGKEAAIRRRQVTLVILLISVVGSFATATHFGIITPQDIHDFGASIAALIRPH
>NZ_CP009319.1|WP_120513444.1|9448_9730_-|hypothetical-protein
MSELICPHCHNRVPNGARVCRGCQAELHYGAHPALYVIALIIGFYLMRKAGTTFPHLPNFVGIGIWVVTGGGLCALIAWATRNRVIFKRRYRT
>NZ_CP009319.1|WP_042286929.1|9726_10872_-|DUF3396-domain-containing-protein
MTKDELIAWANDPNRAGTLPFGAFEPKHQRAIVGAALAVRAVIYFKGGYTPAKRKALVACYQRYDDALQTYQRVAETAAGRAPSKGSPLRWLYQDGKQPVELRKGPSFASLAMSIPADAPFVLALSNAEDKQGASTMEFSTFCLEDWQASMNRGLDVATFSVPQAFLTLCPDVFQPLFAQAVDELDAVYGHAGYAANLSLLQRGPNEASEYFWARKFGPGLDVGDPMRRNLRRLTDRIKTVDWLTAINADLVRELGGVDKLSLPPDWFRKQPYDHGGLIIQAGVAPQTGIAGEQGHPPAPPPAYVLLNNALRPIIVDALGTLQTGTATSTAPLLNTQVATETWLHRLDVEPDRINAYWVELHKTPKLPSAGDVNQANNRTS
>NZ_CP009319.1|WP_042286926.1|10883_11615_-|VRR-NUC-domain-containing-protein
MTTSASGNMGAGSGRTTQVGLTKGNLSPEDLAVLCDALCRCKAIGVYSRDAKILRQSCVAQRLRAKNLASKAVTGQTTPYLPEVSYDMRDEPPTPIMRASDPSTPHPWLPAWIQKYWPGGMDAYKTEDKTWFRRPDVVIVNDPSQPPVQSNIKKVVEMKFPPDEFSKTQEAAYMDIAGDESKYAGITPDDCGCGDADEQSQRSSAKQTQTDLESILGGGSNARSGSLFPPLIPPSLPPSPIPW
>NZ_CP009319.1|WP_042286924.1|11611_12145_-|PAAR-domain-containing-protein
MGFAFIREGDTTSHGGKVLTCTPTNKVDGRPLALLGDMVSCPKCGGVYPIVDVKNLGMTFDGRPVASEGDKTACGATLIASQSTATASPTSGAGAPVGAGKSVLAQTAAQGDGAYRGRFQLVDDASRTPLSNHPYTVTSADGQTIQGTTDANGHTGWLSSHQAASLTFEQSGPASNA
>NZ_CP009319.1|WP_052409305.1|12181_12841_-|hypothetical-protein
MKKSALSSLALAVLLTACGSSKDANNSNFEKAINTHLAKTCVSIKPGGFMVGNTYPIAVALESPNNYRSQQQTDKLNADNTRPLEVLVKAGLLSVKDGTTKPSWTFVATPKEVPAKLYDLTADGKKALANPDGKGTDLCAGRYKVDEVVRFTQPSNALGSTMSEVSYTFSTVDVPAWAKSDEVRQVYTGLASQLADHQKGRTMLVLASDGWIEASDFGK
>NZ_CP009319.1|WP_042286921.1|12959_13262_-|hypothetical-protein
MSMMDRAGSVPAGALTDDQLSDFELAEDLIDTMFSIVSNRIRKGRAEREPNAASVQELEKVLRQCDDDRRLLRWHRQDHAAMRAIIDQYTVSVRHGLAMH
>NZ_CP009319.1|WP_144417590.1|13258_13759_-|hypothetical-protein
MRSEAPNGLAFLGCTGTKFHVSDKGHPVTLNRSADGIARCRFKRYHSESLKHKTKSYFADTLPALERPTAMTNEKRFTVGQVKAMLAEIDAEFPPLSCEQIEASKASEKRRAADRKKREGVAILRAEVETLKARGMSIQQIADVLRGERLDEATPTLRKHLLETRR
>NZ_CP009319.1|WP_042286918.1|13833_14142_+|MobB-mobilization-protein
MPFAVKGAEALTEKIAVRLTPDEKARLRDDAELAGVSVSELVRRRYFGRPIVANTDMVMVRELRRIGGLLKHIHNTTDGVYSRETAQALVEVTGQIKKLSET

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 12145

Burkholderia_virus(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003465059.1\|374_740_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000136268.1\|755_2402_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-39	28.3
WP_000654684.1\|2398_2644_-	mercury resistance system transport protein MerF	NA	NA	NA	NA
WP_000735441.1\|2646_2922_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294667.1\|2937_3288_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000429838.1\|3359_3794_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_042286962.1\|4025_4586_+	recombinase family protein	A0A219Y9V9	Aeromonas_phage	6.9e-33	45.6
WP_042286940.1\|4657_4903_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_042286937.1\|4937_5585_-	AAA family ATPase	A0A222YXS3	Escherichia_phage	1.4e-50	49.3
WP_042286935.1\|5750_6308_+	hypothetical protein	NA	NA	NA	NA
WP_042286932.1\|6383_7175_-	replication initiation protein	E5FFJ0	Burkholderia_phage	3.0e-34	39.7
WP_052409306.1\|8101_9052_+	DNA-binding protein	NA	NA	NA	NA
WP_111946519.1\|9116_9368_-	hypothetical protein	NA	NA	NA	NA
WP_120513444.1\|9448_9730_-	hypothetical protein	NA	NA	NA	NA
WP_042286929.1\|9726_10872_-	DUF3396 domain-containing protein	A4JWV3	Burkholderia_virus	1.3e-155	70.1
WP_042286926.1\|10883_11615_-	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	1.2e-80	64.7
WP_042286924.1\|11611_12145_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.2e-58	65.3

DBSCAN-SWA_2

22319 : 23999

Rhodobacter_phage(100.0%)

integrase,transposase

attL 15747:15758|attR 24664:24675

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
15747:15758	attL	NA	NA	NA	NA
WP_013124600.1\|22319_23999_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	2.2e-05	25.3
WP_013124600.1\|22319_23999_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	2.2e-05	25.3
24664:24675	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009322

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1464134 : 1472668

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036056149.1\|1464134_1465463_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.6e-14	27.5
WP_017918264.1\|1465459_1466206_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.4e-27	34.4
WP_017918263.1\|1466205_1466370_-	hypothetical protein	NA	NA	NA	NA
WP_036056147.1\|1466366_1466738_-	GFA family protein	NA	NA	NA	NA
WP_036056146.1\|1467042_1467594_+	thioredoxin family protein	NA	NA	NA	NA
WP_036056144.1\|1467977_1469399_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	2.3e-80	37.7
WP_036056142.1\|1469403_1470603_+	alginate O-acetyltransferase	A0A125RNN9	Pseudomonas_phage	7.1e-19	27.7
WP_013690383.1\|1470725_1472360_-	chaperonin GroEL	A0A240F779	uncultured_virus	1.3e-169	60.1
WP_013690384.1\|1472377_1472668_-	co-chaperone GroES	A0A221S4A8	uncultured_virus	6.1e-17	42.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009323

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009323_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009323_1

714683-714763

Orphan

Consensus_repeat	Method
CGCTGAAATACGAAACGCCGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009323_1

>merge|NZ_CP009323|1|714683-714763|CRISPRCasFinder
CGCTGAAATACGAAACGCCGGCCTCGCGCCGGCGTTGTTCATGGTGCGGGGAATGTGCCGCTGAAATGCGAAACGCCGGCC

>NZ_CP009323|1|1|714683-714763|CRISPRCasFinder
CGCTGAAATACGAAACGCCGGCC	TCGCGCCGGCGTTGTTCATGGTGCGGGGAATGTGC
CGCTGAAATGCGAAACGCCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009323.1\|WP_013699084.1\|705101_706013_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176144
NZ_CP009323.1\|WP_036049545.1\|706143_707817_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_CP009323.1\|WP_013699092.1\|714281_714656_+\|CbiX/SirB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|239509
NZ_CP009323.1\|WP_052409257.1\|708448_709915_-\|DUF2486-family-protein	unknown	unknown	gnl\|CDD\|378466
NZ_CP009323.1\|WP_013699086.1\|707973_708300_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|227001
NZ_CP009323.1\|WP_036049538.1\|718055_718793_-\|phosphoadenylyl-sulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP009323.1\|WP_036038519.1\|719344_721024_-\|nitrite/sulfite-reductase	unknown	unknown	gnl\|CDD\|223233
NZ_CP009323.1\|WP_013699099.1\|721248_722190_+\|CysB-family-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237173
NZ_CP009323.1\|WP_011545897.1\|727406_727733_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009323.1\|WP_013699095.1\|717008_717971_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP009323.1\|WP_036049540.1\|715669_716986_-\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|225448
NZ_CP009323.1\|WP_013699089.1\|710392_711904_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP009323.1\|WP_036049543.1\|712013_713105_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NZ_CP009323.1\|WP_036049547.1\|704116_705007_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NZ_CP009323.1\|WP_036049534.1\|724417_727279_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|336282
NZ_CP009323.1\|WP_036049536.1\|722587_723802_+\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP009323.1\|WP_013699097.1\|718789_719326_-\|DUF934-domain-containing-protein	unknown	unknown	gnl\|CDD\|226272
NZ_CP009323.1\|WP_013699088.1\|709932_710349_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP009323.1\|WP_013699091.1\|713108_714257_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_CP009323.1\|WP_036049542.1\|714828_715611_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|235711

Protein	Function_ID	Function_description	E-value
NZ_CP009323.1\|WP_013699084.1\|705101_706013_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176144	cd08453, PBP2_IlvR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold. The IlvR is an activator of the upstream and divergently transcribed ilvD gene, which encodes dihydroxy acid dehydratase that participates in isoleucine, leucine, and valine biosynthesis. As in the case of other members of the LysR family, the expression of ilvR gene is repressed in the presence of its own gene product. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.29411e-94
NZ_CP009323.1\|WP_036049545.1\|706143_707817_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP009323.1\|WP_013699092.1\|714281_714656_+\|CbiX/SirB-N-terminal-domain-containing-protein	gnl\|CDD\|239509	cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.	2.29766e-36
NZ_CP009323.1\|WP_052409257.1\|708448_709915_-\|DUF2486-family-protein	gnl\|CDD\|378466	pfam10667, DUF2486, Protein of unknown function (DUF2486). This family is made up of members from various Burkholderia spp. The function is unknown.	1.02722e-14
NZ_CP009323.1\|WP_013699086.1\|707973_708300_+\|c-type-cytochrome	gnl\|CDD\|227001	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion].	2.26604e-19
NZ_CP009323.1\|WP_036049538.1\|718055_718793_-\|phosphoadenylyl-sulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.55128e-114
NZ_CP009323.1\|WP_036038519.1\|719344_721024_-\|nitrite/sulfite-reductase	gnl\|CDD\|223233	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism].	0
NZ_CP009323.1\|WP_013699099.1\|721248_722190_+\|CysB-family-HTH-type-transcriptional-regulator	gnl\|CDD\|237173	PRK12684, PRK12684, CysB family HTH-type transcriptional regulator.	0
NZ_CP009323.1\|WP_013699095.1\|717008_717971_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP009323.1\|WP_036049540.1\|715669_716986_-\|sulfate-adenylyltransferase	gnl\|CDD\|225448	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism].	0
NZ_CP009323.1\|WP_013699089.1\|710392_711904_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP009323.1\|WP_036049543.1\|712013_713105_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	6.39637e-130
NZ_CP009323.1\|WP_036049547.1\|704116_705007_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	1.84199e-116
NZ_CP009323.1\|WP_036049534.1\|724417_727279_-\|DUF927-domain-containing-protein	gnl\|CDD\|336282	pfam06048, DUF927, Domain of unknown function (DUF927). Family of bacterial proteins of unknown function. The C-terminal half of this family contains a P-loop motif. The N-terminal domain appears to have a unique fold, which contains three Helices and two strands. Structural analyses show that helicases containing this domain form a hexameric ring with a positively charged central pore threading a single DNA strand through suggestive of a replicative function for this helicase.	2.40593e-116
NZ_CP009323.1\|WP_036049536.1\|722587_723802_+\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	4.73566e-72
NZ_CP009323.1\|WP_013699097.1\|718789_719326_-\|DUF934-domain-containing-protein	gnl\|CDD\|226272	COG3749, COG3749, Uncharacterized protein conserved in bacteria [Function unknown].	3.82282e-55
NZ_CP009323.1\|WP_013699088.1\|709932_710349_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	1.62505e-54
NZ_CP009323.1\|WP_013699091.1\|713108_714257_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	3.26879e-111
NZ_CP009323.1\|WP_036049542.1\|714828_715611_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|235711	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase.	2.3964e-121

>NZ_CP009323.1|WP_013699092.1|714281_714656_+|CbiX/SirB-N-terminal-domain-containing-protein
MSRHGIILFGHGSRDPRWMEPFERLAERVRASHTSGPVALAFLELMPPELEDAVAAHVTAGCATVTIVPVFVGQGGHVRRDLPEIVEACRAAHPGVDIRCATAIGEDDSVLDAIATYCLQQAGD
>NZ_CP009323.1|WP_013699091.1|713108_714257_+|LPS-export-ABC-transporter-permease-LptG
MRLYEKYFARQIYLTFVFVLFAFSGLFFFFDLISELNSVGHGSYNFGYAVLRVGLQTPSRFYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNRALRSLLKIGVPLVIVTYLIGEFIGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTISNVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLSPIVPAPNTPKDALNPVYRSEQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRENQQDTQRYDIALWRKLLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTAALPGLIYLALGLFGLKWVDRH
>NZ_CP009323.1|WP_036049543.1|712013_713105_+|LPS-export-ABC-transporter-permease-LptF
MIFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGQVSPKDVLVLIGLTVIGYLAMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIIVLIAFFAFVGWPWSNQQSKLIKARFQQRDEVSLLAPGQFRESPSTNRVFFIEKMSADQAAVQNVFVTTTEQGKVNVVVSQTGHTETAQNGDRFIVLENGRRYDGVPGQPNFKIMQFERYGVKIQSKQVVTQPTTTSTPTLDLLRDPTDENLAEFAWRVGLPLIAINLMILAIPLAYQNPRRGRTVNLVMAVLIYLTYSNLLNVMQSQIERGKIPFGVGLVVLHLVVAGIVAFLFWMRVRNRPLISRATFRRGA
>NZ_CP009323.1|WP_013699089.1|710392_711904_-|leucyl-aminopeptidase
MDFSIKGFDWSKGASKGFLTGKSDCVVVGVFESQTLSGAALDIDEAVKGLVSRLVKAGDMDGKLGKTLFLHEVEGIGASRVLLVGLGKQDGFGQKAYQEAARAAWRALLATKVGQVAFTLAQLPVAERGAEWSVRAAILALRGETYRFTQMKSKAEPAPATLKRVVFSVDPADEKAAKQAAKQAVAIANGMDLTRDLGNLPGNVCTPTYLANTARQLAKDWGLKAEVLGLKQIQALKMGSFLSVTRGSVEPPQFIVLHYQGAAAKVAPIVLVGKGITFDTGGISLKPGEGMDEMKYDMCGAGSVLGTMRALAEMELKLNVVAIVPTCENMPSGQATKPGDIVTSMKGLTIEVLNTDAEGRLILCDALTYAERFKPAAVIDVATLTGACVIALGHHNSGLFSKDDALAGELLDASREAGDPAWRLPLDDEYQDLLKSNFADLANIGGRPGGSITAACFLARFAESYPWAHLDIAGTAWKSGAAKGATGRPVPLLSQFLIDRAGA
>NZ_CP009323.1|WP_013699088.1|709932_710349_-|DNA-polymerase-III-subunit-chi
MTRIDFHSNVGDSLAYACRLLRKAYLAGQAVVVCAEPARLRTLDERLWTFSPLDFIPHCSVDSPQASQTPIVLTTDLSRAPHDGVLLNLGAEVPAQFARFARLLEVVGNAPEELAAGRDRYRFYRDRGYALNNYKQGG
>NZ_CP009323.1|WP_052409257.1|708448_709915_-|DUF2486-family-protein
MPDAHNEFDIPVLTDVLVPGKSVLARRPWQAADAAPPHATDLPELPPQVPPELAASGLPTLGGGAGLSTAYGAPAGAGADALPASHLAAGEPAALAPRGLVSSPATAQGAEAPAEPVFVAAEPVTVPPEFAGEPQPLPEAHEASVASEPTQAEAAFVAPEPVSTPPEFAGEPQPLPEAHEASVASEPTQAEAAFVAPEPTSTPPEFAAEPQPWPESHEASTFSGPDPAEAAFVAPEASIPQEFSASPAPLVEPQSSPLESTEAEAVFLAAEPAVPQEFAAAPQPLPIEAVPAEMEARPDPRDDEHDAPDNAPLAYALDGPSQEPAAASATLHGEALHRAPVPPDDLAARTESVLHRVETLAPAAFAQLSPVAAETPVPARFADVEALPPAELIGAAQAEPVPPPAAPIDSRHIAERLQGRVADYLSGEGRALIDARCREAVQQHAAWLVGEVSQQVVTALAPEFERWVAEAVDEALARRGAPQSRQEH
>NZ_CP009323.1|WP_013699086.1|707973_708300_+|c-type-cytochrome
MRITLLRATLALLLAANLPAQAQQPASGPLLAQRRNCMACHAVAAPLMGPSFHAIADRYMNRPDAADYLVQTIVKGSVGVWGPVPMPANTQVTGDEARTLAQWILTLK
>NZ_CP009323.1|WP_036049545.1|706143_707817_+|dihydroxy-acid-dehydratase
MSYNRRSKNITQGVARSPNRSMYYALGYQQADFDKPMIGIANGHSTITPCNAGLQRLSDAAVEAVKAAGANPQIFGTPTISDGMSMGTEGMKYSLVSREVIADCIETCVQGQWMDGVVVVGGCDKNMPGGMIALARLNVPGIYVYGGTIRPGNWKGQDLTIVSAFEAVGEFTAGRMSQEDFDGIERNACPSTGSCGGMYTANTMSSSFEALGMALPYSSTMANPDQEKVDSAAESARVLVEAVKRDLKPRDIITRESIENAVSVIMATGGSTNAVLHFLAIAHAAEIDWSIDDFERIRRRVPVICDLKPSGRYVATDLHRAGGIPQVMKILLDAGLLHGECLTITGQTVAETLREVPSMPRADQQVIFPIDQALYREGHLAILKGNLAEDGAVAKISGLKNPVITGPARVFDDEQSALQAILDDRIRAGDVVVLRYLGPQGGPGMPEMLAPTSAIIGKGLGESVGLITDGRFSGGTWGMVVGHVAPEAFAGGTIALVQEGDSITIDAHRLLLQLNVDDAELARRRAAWQRPAPRYTRGVLAKYAALALPANRGAVTG
>NZ_CP009323.1|WP_013699084.1|705101_706013_-|LysR-family-transcriptional-regulator
MAEPTPDLRQWRYFVAVAEERHFGRAATRLSITQPPLSQAIRALEAALGVLLFVRTQRSVELSAVGAALLPEVRRLLAAADALPPLATSLARGEAGTLALAFVSTADYGLLPALLREFGARYPRVRLQLTEATSDLQVEMLAEGRIDAGLVIEPLPPRHAAGLSYLGVAREPLVVAMPEEAAVPGEDGPIGLEQLADLPLVIFPRRLAPGFYDIITGCYGARGLTPRIGQEAIQMQTIVSLVSAGMGVALVPQSLRNLRRTGVVYRALAGGTPIVETGLVWRTRDVSPVLAGFIEIVRRAAPA
>NZ_CP009323.1|WP_036049547.1|704116_705007_-|prolipoprotein-diacylglyceryl-transferase
MIIHPNFDPVAIHLGPLAVRWYGLMYLVGFIAAIVVGRVRLKLPHVAAQGWTAKDIDDMMFYGVLGVVLGGRLGYVLFYKAGYYFAHPLDIFRVWEGGMSFHGGFLGVLAAMVLFAWQRKRTWLQVTDFIAPMVPTGLAAGRFGNFINGELWGRVTSPDAPWAMLFPGASRDDAIWLAHHPDLAAKWNLNEVFMQYQMLPRHPSQLYEIALEGITLFLLLFFFSRKARPTGAVSALFLIGYGLARFTVEFAREPDDFLGLLALGLSMGQWLSLPMIIAGVLMMLWAYRKGRVATPA
>NZ_CP009323.1|WP_036049542.1|714828_715611_-|uroporphyrinogen-III-C-methyltransferase
MGKVYLIGAGPGAADLITVRGARLLGQAEVVLHDALIEPAMLDYAPNARRIAVGKRCGQRSTAQQFINKQIIDAAREHAVVVRLKGGDPMLFGRADEEMRALEAAGIDYEVVPGITAALASAAALKRSLTLRGVSRSVAFATQSRAPGSDEIREQVQADSLVFYMGRDSAPGIARQLIDAGRAGDTPVAIVEACSTPRERSLALTLARMAAGEAQAWLDPSQPSLLMIGAAFAERAGAVEPGSGEATGQPAGKGEVRNAA
>NZ_CP009323.1|WP_036049540.1|715669_716986_-|sulfate-adenylyltransferase
MSIIENHEDLGVLRFITAGSVDDGKSTLIGRLLYDSKAVLSDQLSALSRAKNKRTVGDELDLALLTDGLEAEREQGITIDVAYRYFATTKRKFIIADTPGHEQYTRNMVTGASTAHAAIILVDATRVTVEGGVTQLLPQTKRHSAIVKLLGLQHVIVAINKMDLVGYSEATFNLIRDAYVVLAQQLGLEGVRFVPVSALKGDNIVTLSDSMPWYAGEPLLDVLETLPVAIDGGEALRFPVQWVARQDGSSADDFRGYMGRVEAGEVKVGDEIAVLPSGRTATVAEIVAPVPGGTAAVESAFAGQTVTIRLAEDVDVSRGDVFVPNAQRIEPARKLEADLCWFDETPLSPQRKYLLKQTTNTVFTKIGAVKQVLDVHTLSHASDRQDLKMNDIGRVALTLQKPIVCDTYDAHPGTGAFVLIDEATHHTVAAGMIRAYSA
>NZ_CP009323.1|WP_013699095.1|717008_717971_-|sulfate-adenylyltransferase-subunit-CysD
MSTTLEQSAFASPAGTASRMGHLDWLEAESIHILRELVAECSKPALLFSGGKDSVVVLHLALKAFGLGPDRKTSLPFPLVHIDTGHNYDEVIDFRDRRAKEIGAELVVGHVEDSIQRGTVVLRRETDSRNAAQAVTLLETIEQYGYTAMIGGARRDEEKARAKERIFSFRDEFGQWDPKAQRPELWSLYNARLHKGEHLRVFPISNWTELDVWQYIAREQLELPSIYYAHQREIVRRNGLLVPVTPLTPMREGEVSETAQVRFRTVGDISCTCPVESDADDVEKIIAETAVTEITERGATRMDDQTSEAAMEQRKKQGYF
>NZ_CP009323.1|WP_036049538.1|718055_718793_-|phosphoadenylyl-sulfate-reductase
MSDVLTPELSAKVERLDALLASIAASHERVKFASSLAAEDMLVTHAILSKGHAIGIFSLNTGRLHAETLGMIDRVRERYGYEIEQFHPQQDAIDQYVAEHGLNAFYESVELRKSCCHIRKVEPLNRALSEVDAWVTGQRREQSVTRAELHEQEQDEARGIAKYNPLADWTEAEVWAYLKAFEVPVNPLHARGYPSIGCEPCTRAIRPGEDSRAGRWWWESRDTKECGLHITIAPVSELPQRPVSA
>NZ_CP009323.1|WP_013699097.1|718789_719326_-|DUF934-domain-containing-protein
MASIIKNRAVIDDAWQVVRAAEDGALPAVDALPAGKLLVPLAYWQAEREALVAARGKDELGVWLAPDSEPAELVADFDKLTVIAVDFPRFGDGRGYSTAHLLRNRHGWTGELRAIGDVLRDQLNYMSRCGFDAFAVRADRDPHDALNAFTEFSERYQGAVDDAVPLFRRRAASAQVNA
>NZ_CP009323.1|WP_036038519.1|719344_721024_-|nitrite/sulfite-reductase
MYQYDQYDQTIVDERVAQYRDQVRRRLSGELSEEEFRPLRLQNGLYMQRHAYMHRIAIPYGNLRSDQLRMLAVIAREHDRGYGHFSTRSNIQFNWIQLEDTPEILRKLASVQMHGIQTSGNCIRNITADQFAGVAPDEVIDPRPWAEILRQWSTFHPEFAWLPRKFKIAVSGAKVDRAAVQMHDLGVYLSRNEQGEVVASILAGGGLGRTPIVGSIIRENLPWQHLLTYCEAVLRVYNRFGRRDNLYKARIKILVKALSPEKFSQQVEQEWQHLKDGPSTLTQAELDRVSKDFAPPVYEKLADTDASYEQHLLENKAFARWVERNVAPHKVAGYAAVTLSLKPNGVAPGDATDAQMDTVADWADAYSLGELRVSHEQNLILANVKKRDLFELWEKAKAAGFATPNIGLLTDIIACPGGDFCSLANAKSIPIAQAIQERFDDLDYVYDLGEMSLNISGCMNSCGHHHVGNIGILGVDKDGAEWYQISLGGEQGTGADGLKLGRVIGPSFSAHEVPDVISTLVDTFVESRIDGERFIDTYQRIGLAPFKERVYAARQPAHA
>NZ_CP009323.1|WP_013699099.1|721248_722190_+|CysB-family-HTH-type-transcriptional-regulator
MNLHQFRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEDELGVEIFTRHGKRVRSLTEPGRIILASVERILQEVESLKRVGKDYAAQDQGNLTIAATHTQARYSLPAAIAEFKKRFPKVHLSILQGSPTQVAEMVIHDQADLAIATEAIADYKELVSLPCFQWHHAAVVPADHPLLERRPPSLDDLAQYPLITYDDAFAGRKKINHAFALRGLSPDIVLEAIDADVIKTYVELGLGVGILADIAFNPERDRNLRSIPVGHLFGSNVTRVALKQGAYLRGYVYTLVELLSPTLNRKLIEQALKGEAESYEL
>NZ_CP009323.1|WP_036049536.1|722587_723802_+|integrase-arm-type-DNA-binding-domain-containing-protein
MPLTDTAIRNAKPADKPVRLFDGGGLYLEIAPSGGKWWRLKYRFGGKEKRYSLGVYPDVTLAIARKKRDEAREKLAAGIDPGEAKKAEKRASLLAAAHSFEVVARGWMAERKTTVEPAQHDKTLARMENDVFPWLGKRPIAEIDAPEILVVLKRVDGRGARFTSHRIRSEISRVFRYGIKEGHCKTDPARDLVDAIPPAQTTHFASITEPEKVAEMLRAFDGFTGTFPVLCALRLAPMLFVRPGELRKAQWSQFELDKGEWRYFVNKTKTDHLVPLATQAVAILRELHALTGDGVYVFPGARDRNRPMSEAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEEKPEVIEHQLAHTVPDSLGRAYNRTKFIKARRSMMQQWADYLDKLKAGAEIIPIAAAG
>NZ_CP009323.1|WP_036049534.1|724417_727279_-|DUF927-domain-containing-protein
MSEFERARVALGYVPPDDRDTWRQVGMALKAEFGEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKITINTLFHLAKVGGFDPRAHRAKPVDPAERERQKAERAAREAAELAALAEKQQAASALAESIWSAAEPAPADHPYLVRKRVPVDALRVYRGGLCIGTAACDGALVIPARDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPATLLIGEGYATCATLAAATGYPAAVAFDAGNLHAVATALRGQYPDTRIVVCADDDHTTKGNPGVTKARAAAEAVAGIVAVPDFGPNRPAAGTDFNDLAAHLGPDAVAAAVRAALAPAGSADIGKGKAAPAAAKPAKRPKTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRIDVIAETRNEMNSEWGYLLEFTDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRCVPRVGWHHGAFVLPDRVIGTGKEALIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRLLFCVATAFAGPLLHFSGLQSGGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASRSGSAKPVLTWRLLFLSNGEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVEKLHGFPTPAALIEHLERHAGMHYGTAGPAFIEWASSQAGELAEHLRMRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELATAHGLTGWPEGEAVEAARRCFEGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGGKMSADDAESVETEYLIEAAVFRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL
>NZ_CP009323.1|WP_011545897.1|727406_727733_-|hypothetical-protein
MAKTNKNAVQPLASHFVAEVNRPDHNRIGTRISDAMELLDSLHWAADKAMSDDDYWLVLSLFRASLPSIGAALEAANDALGESRLGRYVYSNDVTAGGAVLSVPRAAG

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Crispr_ID: NZ_CP009323_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009323_2

3063477-3063564

Orphan

Consensus_repeat	Method
GAATCCGGTGCCGATCGGCCGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009323_2

>merge|NZ_CP009323|2|3063477-3063564|CRISPRCasFinder
GAATCCGGTGCCGATCGGCCGCGCGCTCGCCAATTTCGACATCTACATCGTCGACGAGCAGTTGAATCCGGTGCCGATCGGCACGCGC

>NZ_CP009323|2|2|3063477-3063564|CRISPRCasFinder
GAATCCGGTGCCGATCGGCCGCGCG	CTCGCCAATTTCGACATCTACATCGTCGACGAGCAGTT
GAATCCGGTGCCGATCGGCACGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009323.1\|WP_036051949.1\|3049960_3051793_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|341253
NZ_CP009323.1\|WP_036051951.1\|3045229_3046261_-\|2,3-diaminopropionate-biosynthesis-protein-SbnB	unknown	unknown	gnl\|CDD\|274871
NZ_CP009323.1\|WP_042285582.1\|3070344_3071298_+\|transketolase	unknown	unknown	gnl\|CDD\|226467
NZ_CP009323.1\|WP_036051943.1\|3068486_3069503_+\|sulfotransferase-family-protein	unknown	unknown	gnl\|CDD\|379204
NZ_CP009323.1\|WP_036051950.1\|3046253_3047249_-\|2,3-diaminopropionate-biosynthesis-protein-SbnA	unknown	unknown	gnl\|CDD\|274872
NZ_CP009323.1\|WP_080742149.1\|3065069_3065849_+\|sulfotransferase-family-2-domain-containing-protein	unknown	unknown	unknown
NZ_CP009323.1\|WP_042285600.1\|3048485_3049919_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|238985
NZ_CP009323.1\|WP_080742150.1\|3053111_3054656_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP009323.1\|WP_036051939.1\|3073571_3074666_+\|phosphoserine-transaminase	unknown	unknown	gnl\|CDD\|183540
NZ_CP009323.1\|WP_036053568.1\|3040736_3043883_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NZ_CP009323.1\|WP_036051941.1\|3071294_3072404_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009323.1\|WP_088555439.1\|3043884_3045105_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NZ_CP009323.1\|WP_036051946.1\|3065853_3066732_+\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|181947
NZ_CP009323.1\|WP_042285586.1\|3047365_3047794_-\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319257
NZ_CP009323.1\|WP_042285595.1\|3067732_3068473_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|291003
NZ_CP009323.1\|WP_036051940.1\|3072400_3073531_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP009323.1\|WP_036051947.1\|3054720_3056127_+\|FAD/NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|226906
NZ_CP009323.1\|WP_036051948.1\|3051789_3053115_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|283599
NZ_CP009323.1\|WP_036051945.1\|3066808_3067657_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP009323.1\|WP_036051942.1\|3069529_3070348_+\|transketolase	unknown	unknown	gnl\|CDD\|238970

Protein	Function_ID	Function_description	E-value
NZ_CP009323.1\|WP_036051949.1\|3049960_3051793_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|341253	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS). The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	4.00918e-141
NZ_CP009323.1\|WP_036051951.1\|3045229_3046261_-\|2,3-diaminopropionate-biosynthesis-protein-SbnB	gnl\|CDD\|274871	TIGR03944, ornithine_cyclodeaminase, 2,3-diaminopropionate biosynthesis protein SbnB. Members of this protein family are probable NAD-dependent dehydrogenases related to the alanine dehydrogenase of Archaeoglobus fulgidus (see TIGR02371, PDB structure 1OMO and ) and more distantly to ornithine cyclodeaminase. Members include the staphylobactin biosynthesis protein SbnB and tend to occur in contexts suggesting non-ribosomal peptide synthesis, always adjacent to (occasionally fused with) a pyridoxal phosphate-dependent enzyme, SbnA. The pair appears to provide 2,3-diaminopropionate for biosynthesis of siderophores or other secondary metabolites. [Cellular processes, Biosynthesis of natural products].	7.61495e-146
NZ_CP009323.1\|WP_042285582.1\|3070344_3071298_+\|transketolase	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	2.29456e-59
NZ_CP009323.1\|WP_036051943.1\|3068486_3069503_+\|sulfotransferase-family-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	1.15785e-05
NZ_CP009323.1\|WP_036051950.1\|3046253_3047249_-\|2,3-diaminopropionate-biosynthesis-protein-SbnA	gnl\|CDD\|274872	TIGR03945, cysteine_synthase, 2,3-diaminopropionate biosynthesis protein SbnA. Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme. [Cellular processes, Biosynthesis of natural products].	6.57555e-153
NZ_CP009323.1\|WP_042285600.1\|3048485_3049919_+\|adenylyl-sulfate-kinase	gnl\|CDD\|238985	cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.	5.00942e-73
NZ_CP009323.1\|WP_080742150.1\|3053111_3054656_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	3.16702e-92
NZ_CP009323.1\|WP_036051939.1\|3073571_3074666_+\|phosphoserine-transaminase	gnl\|CDD\|183540	PRK12462, PRK12462, phosphoserine aminotransferase; Provisional.	0
NZ_CP009323.1\|WP_036053568.1\|3040736_3043883_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP009323.1\|WP_088555439.1\|3043884_3045105_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	6.27402e-91
NZ_CP009323.1\|WP_036051946.1\|3065853_3066732_+\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|181947	PRK09553, tauD, taurine dioxygenase; Reviewed.	2.86828e-73
NZ_CP009323.1\|WP_042285586.1\|3047365_3047794_-\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319257	cd16400, ParB_Srx_like_nuclease, ParB/Srx_like nuclease and putative transcriptional regulators related to SbnI. This family contains a Pyrococcus Furiosus enzyme reported to have DNA nuclease activity and resembles the N-terminal domain of ParB proteins of the parABS bacterial chromosome partitioning system. This sub-family also includes siderophore staphylobactin biosynthesis protein SbnI. 60% of the P. furiosus nuclease activity was retained at 90 degree C, suggesting a physiological role in the organism, which can grow in temperatures as high as 100 degrees Celsius. The protein has endo- and exo-nuclease activity vs. single- and double-stranded DNA, and nuclease activity was lost in methylated proteins prepared for structure solution. This family has a fairly well-conserved DGHHR motif that corresponds to the same structural position as the phosphorylation site (a portion of the ATP-Mg-binding site) of sulfiredoxin and the arginine-rich ParB BoxII of ParB.	3.07255e-28
NZ_CP009323.1\|WP_042285595.1\|3067732_3068473_+\|hypothetical-protein	gnl\|CDD\|291003	pfam14305, ATPgrasp_TupA, TupA-like ATPgrasp. A member of the ATP-grasp fold predicted to be involved in the biosynthesis of cell surface polysaccharides such as the O-antigen in proteobacteria, the capsule in firmicutes and the polyglutamate chain of teichuronopeptide.	6.22882e-13
NZ_CP009323.1\|WP_036051940.1\|3072400_3073531_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.40028e-27
NZ_CP009323.1\|WP_036051947.1\|3054720_3056127_+\|FAD/NAD(P)-binding-protein	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	3.48338e-92
NZ_CP009323.1\|WP_036051948.1\|3051789_3053115_+\|MFS-transporter	gnl\|CDD\|283599	pfam05977, MFS_3, Transmembrane secretion effector. This is a family of transport proteins. Members of this family include a protein responsible for the secretion of the ferric chelator, enterobactin, and a protein involved in antibiotic resistance.	7.92196e-103
NZ_CP009323.1\|WP_036051945.1\|3066808_3067657_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.50211e-10
NZ_CP009323.1\|WP_036051942.1\|3069529_3070348_+\|transketolase	gnl\|CDD\|238970	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.	2.11101e-92

>NZ_CP009323.1|WP_036051947.1|3054720_3056127_+|FAD/NAD(P)-binding-protein
MTTIAIIGAGFCGATLAMHWLRSPPVRPLRLLLINRSGAMARGVAYGTRTLDHLLNVPAGRMSADEADVDDFHRYAQQRDARHTRASFVPRRLYGDYLEARLTERIERACEGVSFRSVVGSAVAIAPPRGERPAAITMADGEVIHADCVVISNGNQMRGEPPAGSVPREVLESGRYVSDPWRPGALNGIDGAAPVLLVGSGLTMVDVVLGLRARGHTAPIRVVSRHGLLPQAHREMDAPPHYDGRLAAAMLARPEVRHYLRMMREALAEAAIAGRDWRDVIGSIREATPLLWRRLADRERRRFLRHLRAYWDVHRHRCAPGPAALLHAEFERGALVLTAGRVTGYAWRPDSVEVAVRRRGADVPEPLRVAAVINCTGPAPDFGDAADSLFGRLHADGLLRRDAIGMGFAVADSGAVLDASGTASDWLYYVGPLLQARDWEATAVPELRRHVRRLAETLVLPQRERVAG
>NZ_CP009323.1|WP_080742150.1|3053111_3054656_+|efflux-transporter-outer-membrane-subunit
MTRHRSVIHRSITLRSVSHRATGVARGPRLVRLARASALSCAAALAVALAGCAAGPDYQRPAVAAPQAWKIDPAYANWHPAEPSRASLDDAWWTTFGIGELDELERRVLERNQTLREAAARYDQARAQLSAVAAARLPDVGVGLAAQRRRISANRPLTEYDSPNYSTVQNDFEAGAWLSWEVDLFGRVRRSVEASVADTEQSADDLANARLALTAQLASAYFALRALDDESGIVADSIEWQQKALDFVQQQWKFGQVSELNVLQQQTELDATRVQLHLLATQRSRYEHVIATLVGEPAPQFSLAPNREAYALPVLPTGMPSDLLQRRPDVAAAERAMAAANARVGVASAAYFPSLVLSPSIGWQSAQFATLATVPSLVWSLGGSIGETLFDGGRRVARKRFASAGYDAAQARYRASVLTAFQEVQDAVTGLDVLAAAAQQSRRAVDDAQRLLTLASARYRNGMVTYLDVIEAQRAALAGEREAARIRGMQADTVVRLAKALGGGWQAPQALATR
>NZ_CP009323.1|WP_036051948.1|3051789_3053115_+|MFS-transporter
MSDLLESRDESDPGLAAVAGTTARPARRSWFATLRGPFAYRAFRTIWCASLVGNIGGSIQTVAAAWLMTSMAPSPAMVSLVQTASTLPIALFALMSGVAADAWDRRRVMLVSQSVMLGAALCLALLAAWGVMTPAWVLLFTFLGGCAGAMFQPAWQSAVTEQVPARELSAAIALDSFSLNIARTAGPSLGGFVVATLSPQAAFGISVLACAWLVAVLARAVRGGGAARERRREPLAAMLGQGMRYCFGDAGLRAALLRSTAFGFLGSPVWALLPLFARQRFGGDATTYGILLASFGAGAAAGALGGAALRMRLGRENLLALCTLSFAAGMAIAAWSPTRLAALAGLAMAGGSWVAVVSTYNLTIQTASPAWVAGRSLSLFHSCIVGGLAIGSYLWGLVATATSIRLVFIVSALLMALAATLAKWLVLPAQDAPAMPGGSAS
>NZ_CP009323.1|WP_036051949.1|3049960_3051793_+|non-ribosomal-peptide-synthetase
MTQHDPAGRHDPNPASEDPFARRFSTASAGAIASADSLTARFAEMAARQADAPAVEHDGRRWTYAELAARASRIAAALLAAGGADEEPVALLYGHGAPMIAALYGVLGAGKFYVPLIVDHPLAHLQAVVRECRCRIVLAAPEHAALAASLGLAVCVIDDASLPEAGTPLQARRPEAISYLLFTSGTTGVPKGVMQCDRNVLHHAACYASSLGLERDDRMTLLPYYGFDASVMDIHATLLSGACLHIWDVRRRGVDGIGEWLLRERITIWHSTPSVLRAAFPGFARPAALRWVVLGGEAAVGGDVALVARHGGPRCGLINGLGPTECTTALQYVADLETDANAVRLPVGRPVPGVQATLLDAQGQPGASEGELAITSAFVALGYWNRPELSAERFGEAPEGGGARRYRTGDVLRRDANGCYEHLARLDDQVKIRGMRVELGEVRAALAAHPQVRQAVVLPRTDTPAGPVSIVAYVVTAGPADAAALRAHVAARLPDYMVPAVIVPLAEMPLLPNGKLDRQALPVPRAPEPGGARKAPRTPLHRALAGYWAEVLRRETVGIDENFFELGGDSLLGTQLLGRVRRELEIDAQLADLFRHPTVEALATHLLESQ
>NZ_CP009323.1|WP_042285600.1|3048485_3049919_+|adenylyl-sulfate-kinase
MPIAATNGMRRAIGVVHQVLDASGSGAAGLQALHCGAARVTVLCDPDAPIARVGSQQGDVADRLAFADEATLAAQGARFDLVLGPVKIGANGVDLHYGRRLESLLERFGTSRASVLPNTVRYSAQLVEWRDAARLDADVAARARELGERYAVDFGPALERMAAAAPARERVRAECLRPLHASVAFLSCQPQSRGPRPDSAAVPPQAPASLTLRAEQPGRADAVIWTQELIHDGIVIGRARAVGWLPRRMELAPGEAIEVALDDIGAAMPLDDGGAAAWFAAPLQGDAQEAVVPLVFWLTGISGAGKTTIATRFEQQARARRWPATVLDGDALRGGLNADLGFSDADRAENVRRIAEVAALMADTGRVVIVSCISPKQAFRDAARAIIGEERFVEVFVDVPPSVAEARDPKGLYRRARAGLIASFTAIDSGYEIPRAPRIHIDTTAMDVESAARCLSRHYEGLFQPASRTGDTEVAAA
>NZ_CP009323.1|WP_042285586.1|3047365_3047794_-|ParB-N-terminal-domain-containing-protein
MNAEIHRRADAANPSVVLLPPDILRPTEEILASRFREVSERLFAAGVWQEPILVEQASLVVMDGHHRRAFALANGFARVPCVLLSYAEVSVESRREDQCVTPHEVITRGLEGRLYPAKSTRHIIPGSARISCHFPLERLRYS
>NZ_CP009323.1|WP_036051950.1|3046253_3047249_-|2,3-diaminopropionate-biosynthesis-protein-SbnA
MKFGSIEQIINDRIFLRLDEFAAGRQVYLKLEGFNPGGSIKIKTALALIRDAEQNGRLLTKRKMIESSSGNLGLSLSMIAAARGYRFTCVVDANTSQQAIGVMRAFGTEVVVIDRRDEQGGFLGNRLAYIRDALERDPDLTWLNQYQNAANPAIHADMTARAIHEEFGKVDHLFIGAGTTGTLMGCVEYFRRHSPGTEIIAVDSVGSITFGTPGGRRHLPGLGSSVMPHFFDGSRIDRLLQIPEPETVCACRDLARRYGGLFGASTGTVLAGVRRLAGELGPDATIVAIAPDLGGLYVDTVYNDNWCDDTYGQAWRDALGQIHVMENLENV
>NZ_CP009323.1|WP_036051951.1|3045229_3046261_-|2,3-diaminopropionate-biosynthesis-protein-SbnB
MSNRPRPFSVIGGSYIAELLATSKRDIIDIVEHGYRLHELGGTNNPDSYFLRFDDKPEARIIALPAAIRDVDRARFVSGIKWIASYPRNIEANLQRASAVVVLNDYETGYPFACLEASQISAARTAASAVLAATRLGPAQRRAASLGVIGGGVIASTILEYFKAAGWHFDEVGIHDQSPEHAEAFARNLSSRDVYPVRTCSAEQALGAELVVLATTAGAPWVPADYRFTASQRVLNVSLRDLEPDTLLAANNVFDDVEHCMKANTSPHLAQQRYGHRDFVSGTIGQHILGTLRLDPGKPVIFSPFGLGVLDLAVSMFIHERALAEGGQHSIDDFFASTERWSQ
>NZ_CP009323.1|WP_088555439.1|3043884_3045105_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MSFATRRHLLALTTTSLIAVGLLAWLARSPDTAHAQAAKAAPAVPVTAATVGAMDVPVYLTGVGTVTPLYDVTVRSQVDGQITGIHFKEGQQVREGDALVDIDRRAFQAQADQAAARLAQDQATLANARLELTRHERLAEVNATSTQALEAQRARVDELVAQVRGDRAAVANARVSVDYTTVRAPISGRVGFRLADQGNIVRANDTPILTLVTTAPITVMYAQSQNALPDIQAAMRGGKVEVVALNTDGTRVLSRGHLETIGNRVDVNSGVIRLKGSFANADGALWPGQSVMIRTVVDTLRDVLAVPDDAIQTGPNGHFVYVIGAGDTVAPRPVRLGPRVLGHAVIASGLKSGERVVVQGQYRLQDGARVAATLLPPPAAPLRADTTADVPHALDAGSGSLTLGAD
>NZ_CP009323.1|WP_036053568.1|3040736_3043883_-|efflux-RND-transporter-permease-subunit
MRTNLFAVFIRYPVATCLLTAGILFAGLAAYQHLPVAPLPQVEFPTIQVSAVLPGADPESVASTLAQPLETQFSKIPSVVQMTSQSTLSSTSIVLQFALDRSIDAAANDVQAAIDAAAAQLPANLPSPPTFQKVNPADAPILLLSATSDTLPLTTIDDYVETRLTKSLSQIDGVGAVSIGGQQKPSIRIQFDPVKLAARGLSSEEVRHALAALSGVNPKGIFNGATRSYTIYTDGQLTQPAQWNEAIVAYRDGAPIRVRDIGRAVLGPEDNTLAAWIDGKRAVSVGIYKKPGANTVATVDQIRARLPELTASLPPSLKVRILADRTQTIRASLLDIELTLLLNVVLVVVVIYAFLGSARTTMIPAITVPVSLLGACALMWACGYSLDNISLMAMTIAVGFVVDDAIVMVENIARHVEHGEPPMRAALKGLDETSFTIASISISLVAVLLPLLLMGGIIGRMFREFAVTLSMTILVSAFVSLTLTPMMAAYMLRGGASDAERARRPSRFERAFARLARGYERALDVALTHRFLTLCLFFASVAASVLLYAGIPKGFFPQQDTGVITGVSEASQTISVEDMARHSAALAAIIRADPAVEHCQMAVGGSAYAGTTVNNGRWYITLKPRGQRDASADEVIRRLRPQFAKVAGVRMYLQAAQDLIIGARLARTQYQLTLQSADVGLLTGWSPRVLARLSDLPQLRDVASDQQVNGSALSIRIDRDQAARYGLTPQAIDGTLYDAFGSRQIGQYFTQLSTYKVVMEALPSLQRDPSTLDKMYLKSPSGEQVPLSAVARWTTDTTQPLSINHQAHFPSVTISFNLAPGVSLGEATAAIDTALAAMNLPPAIISAFQGTAQAFQSTLSTMPMLIVAALIVAYLVLGALYGSFVHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIGVILLIGIVKKNGIMMVDFAIVATREQGMSSYEAIRNASLLRFRPIMMTTMTALFGALPLIIADGIGSELRRPLGYAMVGGLIVSQALTLFTTPVIYLYLDALSNRLAAWFRRRNAYSTQQPARQGITQD
>NZ_CP009323.1|WP_080742149.1|3065069_3065849_+|sulfotransferase-family-2-domain-containing-protein
MSASGSRIAFVHIPRTAGTAFGEHLDQLHAGARIAKFYVDDEHPVVNGRIDAYRALDEADKASYAMLRGHFPYGFDDSEHGSRYVTLLREPVSRLVSYYFYALKEPLNYLHAYLFQRRIGLERFLASEASIDLDNAQVRAVSGAHFDSPRARVGPEHLEMAKHNLVERFAAFGLTERFDESMRRFCARFGWPAAGVERRNEGSYARDLTLSPACREHVEHSNRFDIELYRFALERFDREAVPAVHDELRDTDTARTTRS
>NZ_CP009323.1|WP_036051946.1|3065853_3066732_+|TauD/TfdA-family-dioxygenase
MTTLDLRPLSGTIGAQVRNRTLAGIVEHGGVEEIRAALLRHKVLFFTDQPALEVDTQIAFARLFGEIETNFPSFSAKPDGRPEVTVFDADVPSGRASIWHTDLSVAKAPTALGVLCVMETPASGGDTMWADLEAAYESLSPGMQAFLEGQRAVHDMTTEQYSQRPGAFQGKGRTDIDLSNLFGAEHPVVRVHPETGRKCLFVNPFMTSHLAGFHSAESATILNYLYAQMEKPQFTVRWHWSNGDVALWDNRCTMHTAVDDYGAGRRFARRVCVRGDVPFGVAREAATAAEPA
>NZ_CP009323.1|WP_036051945.1|3066808_3067657_+|class-I-SAM-dependent-methyltransferase
MNSSTMQSGVDFSGSVYLASSTVRAVAQRLNWRAKVLISGYEQDFRGKRVLDLASHDGRFMHAALAHGAAKVVGVEVRESHLDAARANLAQGGHARERYEVVAGDLVEYLRSVEPGGFDTILCFGVLSHLIEHIDVMREIGRIAPGAFILDTWVARERWNLRERLRNRRVNAFVRNMQQGGFGKRSLLTRMQGWFDDVLPSERSRTGNLVLLYEDAAAPGATARQSGLMGWANRSAVEMLFDHYGLDHERVDWHAQGLTDWSELEDYRSGSRESWVARARRA
>NZ_CP009323.1|WP_042285595.1|3067732_3068473_+|hypothetical-protein
MFQAGATPDEMRRVASETQLDCKLTCRTHLQAFEAYLPKLYFQGDVADCDFAALPPRYVIKPRCQTGVLMLMDRGTDLKTGAAFAPEEIRAFFARQWCYRGLNNHVIVEEMVENRDGSPCVSQFKCLTFHGRVEYIHYVTVGYDLGCVAYDYDRDWRRAALYHSAQPIEREIARPAHFDRVITLAEQLADYYRGWTGIEHVRVDLFDSDRGPVFGEYAGGTNGGEGFTDEAQRLLGALWRGGAGPS
>NZ_CP009323.1|WP_036051943.1|3068486_3069503_+|sulfotransferase-family-protein
MTSADSSGPVCVKQVLRVRHADSTRMVRPGDFDSRVVARHASLAELPERARYVPLYADWRAERLVHGRWEGDAALSDVPFLYQHQRRHVQWLAELPFERLDAWHDDAGLTPTFVFSIGRCGSTLLSRLLAAAGEPAISEPDVLTNVAWVDDDAELAAARRWGPSVVRAAVCGLALACGRAPVIKLRARCNRAVDVFLQAFPQARYVFMFRERDDWVRSTSRAFGERGETLAELLKVSVEAFDRLHRAGVRPQPVWYEDLLAGPLPALRRIVSDPAALAARGDAIATALGRDAQAGSGLSRERLSTRGADAEALAAFDACWRAIRSDALLSEHGLARLR
>NZ_CP009323.1|WP_036051942.1|3069529_3070348_+|transketolase
MNLEIQIRESRKRVLTMLHGAQGGHFGGAMSVLDSLMVLHHRILDRDPARRAQGRADRLILSKGHASVALYATLASVGALPEAELASYGQHGGRLACHPDMSLCDAIDFSTGSLGQGLSVGLGMALALRGTGARVWVVLGDGECQEGQVWEAAQLASRYRVDNLHAVLDLNGYQEMGWHGMPGIEPAPLPDAARKWEAFGWHVSEAPGHDAAGLEAAMRNMLGRRGQPGVLLAHTEKGHGIPAFADAPGLSHCLSLTEAQFRDAVMAAGEPA
>NZ_CP009323.1|WP_042285582.1|3070344_3071298_+|transketolase
MRPAAHCAQALVERARHDPRIWVVDGDLADSYGVDRFAQAHPERFLMAGIAEQTMVSTAAGMAACGLRPWVFSFAAFLCFRAYDQIRVGLAQTGVPVTLVGSHAGGCGGPNGKSHQALNDIAAIGSLPNLDIWTPGCEADTRFVVDAVLARERPAYLRYPREPLGALPGEPAECRWIGARARFALVSCGLFTHVALDAARRLREFDVDAGVIHLTRLAPFPAAEFAALLRDVDGLWVVDDHTRRGGLADLLHAEGFAVRDPVFSWPADWSGDFGPTEVLLKRHGLAADDIAARLAAELRGGGRAARSGARAAREAGR
>NZ_CP009323.1|WP_036051941.1|3071294_3072404_+|hypothetical-protein
MSADLLVTGTGSLAEAVLFDLATLPAGARPLRIVLAGRNAARLAWLVQATNARAVVHGTPHRVVGHRLDWDAAGALDSLLAALRPALVFNVASLQSMWEIAAGRDAWAATIRAQGYGATLPLQVVLALRVARAIAAHSPGSRFVNACYPDAVNEILVRLGHDVVCGIGNVATLAAAYHAEMDLAPGARLRMLAHHWHVGAAIAGHGHRHAPRVWVDARACEARALPDPRLPADASLNRVTGATGAVLLAALLGRIASYAGHAPGPNGLPGGYPVAIEAGRLSLDLPAGLELEAAVALNREWSAREHVELDASGTVRTGARDGEEDIPGGARLPCVWSIETVEQVARQMLRTRAELQAVASPPLQQQETQ
>NZ_CP009323.1|WP_036051940.1|3072400_3073531_+|acyltransferase
MNQGKRSNGVDMLRGIAILLVLILHFHLTYRLHLLPFDLPWLSEAIKAVARNGNYGVTMFFTVSGFLITSTSLRRFGAPTRIRPGTFYRFRASRILPCLVLALAIMVVLSLFEMRSFVNKPDTASMPVAVLSVLTFWHNVLMAQVGYFNYAMNILWSLSVEEVFYLSFPIVFLLLRRPRYIGIWLVVPILFAPYYRSLHAEDEIVALYGYLSCFDAIAMGSLVALLPARRIARSTGIALRCAAGLVLALTYLSGPIMQHVVWGVSVVALCTAVLLYCFQHEAASAQPARTWRVARVIRWFGQRSYELYLFHIIVLGVLREYVTRENVGLYAKPLWLLFYLCVAALVAQIVFRHFSEPLNAMLRRGAPRPAAGLLEK
>NZ_CP009323.1|WP_036051939.1|3073571_3074666_+|phosphoserine-transaminase
MHPNQLNFSGGPGALPDCVLDELQQAVVALPETNLSVLGMSHRSRWFAQLLEESEADLRALLRIPDDYSVVYLQGGSSLQFSMIPMNFRVPGAPPPDYVTGGYWSRKAIDEASRVMAMRTVWDGAASGYRTLPRLADLDWHPRAPYRHFVSNETVEGLQFPAVPDDDGAPWVADMSSDFVSRPFDVRAYGMVYAHAQKNLGPAGVTVAIIRNALLERIPDTLPPMLDYRTHIRHGSNYNTPPVLAIYVMARVLRWIRDEVGGVERMAERNARKAAQLYATLDELREVVDAHARRECRSTMNVAFRFRDARLDARCLELATEAGFSGLNGHRSIGGLRASLYNAVSEQAVSRLTAFLKDFALRHA

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Crispr_ID: NZ_CP009323_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009323_3

4310474-4310568

Orphan

Consensus_repeat	Method
GATCGTCCGGCGCGCCCCGCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009323_3

>merge|NZ_CP009323|3|4310474-4310568|CRISPRCasFinder
GATCGTCCGGCGCGCCCCGCTCGTGATGGTGAACGCCCGACGCGTGACGGCGCGCGTTTCTCCCGCGATGGCGATCGTCCGGCGCGCCCTGCTCG

>NZ_CP009323|3|3|4310474-4310568|CRISPRCasFinder
GATCGTCCGGCGCGCCCCGCTCG	TGATGGTGAACGCCCGACGCGTGACGGCGCGCGTTTCTCCCGCGATGGC
GATCGTCCGGCGCGCCCTGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009323.1\|WP_013698525.1\|4322461_4323289_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP009323.1\|WP_036050879.1\|4307451_4310028_+\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|235101
NZ_CP009323.1\|WP_036050884.1\|4304206_4305088_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP009323.1\|WP_036050889.1\|4298419_4299802_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|182723
NZ_CP009323.1\|WP_036050864.1\|4319836_4320781_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP009323.1\|WP_013698515.1\|4305258_4305999_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP009323.1\|WP_036050866.1\|4314820_4316134_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|129010
NZ_CP009323.1\|WP_013698511.1\|4301843_4302626_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|237831
NZ_CP009323.1\|WP_013698519.1\|4312081_4312615_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|237227
NZ_CP009323.1\|WP_036050857.1\|4324896_4325835_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP009323.1\|WP_036039800.1\|4316190_4319709_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP009323.1\|WP_036050881.1\|4306481_4307291_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP009323.1\|WP_036050887.1\|4299815_4301012_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP009323.1\|WP_025096632.1\|4301028_4301850_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP009323.1\|WP_036053312.1\|4321176_4322403_+\|succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|236393
NZ_CP009323.1\|WP_013698512.1\|4302676_4303237_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP009323.1\|WP_036050860.1\|4323745_4324885_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP009323.1\|WP_036050862.1\|4323288_4323645_+\|arsenate-reductase	unknown	unknown	gnl\|CDD\|239333
NZ_CP009323.1\|WP_025096629.1\|4303323_4304037_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP009323.1\|WP_036050869.1\|4312611_4314687_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137

Protein	Function_ID	Function_description	E-value
NZ_CP009323.1\|WP_013698525.1\|4322461_4323289_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_CP009323.1\|WP_036050879.1\|4307451_4310028_+\|[protein-PII]-uridylyltransferase	gnl\|CDD\|235101	PRK03059, PRK03059, PII uridylyl-transferase; Provisional.	0
NZ_CP009323.1\|WP_036050884.1\|4304206_4305088_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	3.25815e-151
NZ_CP009323.1\|WP_036050889.1\|4298419_4299802_-\|RIP-metalloprotease-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	1.88613e-112
NZ_CP009323.1\|WP_036050864.1\|4319836_4320781_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.13697e-12
NZ_CP009323.1\|WP_013698515.1\|4305258_4305999_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	2.88307e-159
NZ_CP009323.1\|WP_036050866.1\|4314820_4316134_-\|cell-division-protein-FtsZ	gnl\|CDD\|129010	smart00771, ZipA_C, ZipA, C-terminal domain (FtsZ-binding). C-terminal domain of ZipA, a component of cell division in E.coli. It interacts with the FtsZ protein in one of the initial steps of septum formation. The structure of this domain is composed of three alpha-helices and a beta-sheet consisting of six antiparallel beta-strands.	1.0499e-20
NZ_CP009323.1\|WP_013698511.1\|4301843_4302626_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|237831	PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional.	4.22926e-131
NZ_CP009323.1\|WP_013698519.1\|4312081_4312615_-\|peptide-deformylase	gnl\|CDD\|237227	PRK12846, PRK12846, peptide deformylase; Reviewed.	8.5049e-91
NZ_CP009323.1\|WP_036050857.1\|4324896_4325835_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	0
NZ_CP009323.1\|WP_036039800.1\|4316190_4319709_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP009323.1\|WP_036050881.1\|4306481_4307291_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.2879e-166
NZ_CP009323.1\|WP_036050887.1\|4299815_4301012_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP009323.1\|WP_025096632.1\|4301028_4301850_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.16223e-43
NZ_CP009323.1\|WP_036053312.1\|4321176_4322403_+\|succinyldiaminopimelate-transaminase	gnl\|CDD\|236393	PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional.	0
NZ_CP009323.1\|WP_013698512.1\|4302676_4303237_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	5.13555e-110
NZ_CP009323.1\|WP_036050860.1\|4323745_4324885_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP009323.1\|WP_036050862.1\|4323288_4323645_+\|arsenate-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	2.33056e-56
NZ_CP009323.1\|WP_025096629.1\|4303323_4304037_-\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	1.5016e-145
NZ_CP009323.1\|WP_036050869.1\|4312611_4314687_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0

>NZ_CP009323.1|WP_036050879.1|4307451_4310028_+|[protein-PII]-uridylyltransferase
MSVPALTATEAPSHKAEFRAVKAELIARFRAATQVEALMRALSRATDEALRQLWTDCDLPGSLALVAVGGFGRGELSPHSDVDILVLLPDAHGGEFDARIERFIGMAWDLGLEIGSSVRTVGECIDEAAQDVTVQTSLLEARRITGSLTLFKRAVARYREALDPRAFFQAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGKSWRELDTRGLISAREARELRRNEAFLKALRARLHVITGRRQDILVFDLQTQAAESFGYVPTPAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGITRVLSPGRFVEKQGMLETVSDDVFEQHPDAILEAFLLYETTRGVKGLSARTLRALYNSRDVMNGAWRRDPRNRETFMKILQQNEGITHAFRLLNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIANFERPWVLYVAALFHDIAKGRGGDHSKLGMADARRFCREHGITGDDAALVVWLVEHHLTMSQVAQKQDISDPEVVKRFAGLVGNERWLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRATSAVLGGARPDTHSELQTRRDEALALLRLETVPDDVHQPLWDQLDVGYFLRHDAADIAWQTRVLYRHVHAETAIVRARPSPVGDALQVLVYVKDRSDLFAGICAYFDRNGLSVLDARISTTRHGYALDNFIVTRSEHDVQYRDIANLVEQQLADRLSSPAPLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPGLLYSIARVLAEHRVGVHAARINTLGERVEDVFLLDGAGLSDNRLQIQVETELLRAIAA
>NZ_CP009323.1|WP_036050881.1|4306481_4307291_+|type-I-methionyl-aminopeptidase
MAITIKTDHDIEQMRVACRLASEVLDYITPFVVAGTTTGEIDRLCHEYMTNVQGTVPAPLNYQPPGYPPYPKAICTSVNDVICHGIPGDKVLKNGDALNIDITVIKNGYFGDTSRMFLVGEGSILAKRLIQTTYECMWLGIEQVKPGAHLGDIGHAIQKHAEGRGYSVVREYCGHGIGTVFHEDPQVVHYGRPGTGIELVPGMIFTIEPMINAGKRDIRTMPDQWTVKTRDRSLSAQWEHTVLVTPTGHEVLTVSTGTPARPALDAVAA
>NZ_CP009323.1|WP_013698515.1|4305258_4305999_-|30S-ribosomal-protein-S2
MAVTMRQMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFTDAQKYVRQLSANRGTILFVGTKRQSRDTIAQEAQRAGMPFVNARWLGGMLTNFKTLKVSIKRLKDMEAAVESGETEKMSKKEALLFEREIAKLQKSIGGVKDMGGIPDAIFVVDVGYHKIAITEANKLGVPVIAVVDTNHSPEGVDYVIPGNDDSSKAVALYAEGVADAILEGRANAVNEVVQAVRGDDEYVEENA
>NZ_CP009323.1|WP_036050884.1|4304206_4305088_-|elongation-factor-Ts
MAAITASMVAELRAKTDAPMMECKKALTEADGDLVKAEELLRVKLGNKASKAASRVTAEGVVSSFVSNGAGALVELNCETDFVAKNDDFLAFAKTVAELVAAQNPADVAALSALPLDGKTVDEVRLALVGKIGENISIRRFVRFETANQIATYLHGSRIGVIVEYTGADEQVGKDVAMHVAAMKPVALSAEQVPAELIEKERRVAEQKAAESGKPAEIAAKMVDGSVQKYLKEISLLNQPFVKNDKQTIEQMLKAANAAVQKFSLFVVGEGIEKRQDDFAAEVAAQVAAAKQQ
>NZ_CP009323.1|WP_025096629.1|4303323_4304037_-|UMP-kinase
MPNAYKRVLLKLSGEALMGDDAFGINRATIERMVADVAEVVRLGTQLAVVIGGGNIFRGVAGGAAGMDRATADYMGMLATMMNALALQDAMRHAGIEARVQSALRMDQVVEPYIRPRAIRQLEEGRVVIFAAGTGNPFFTTDTAAALRGSEVGAEVVLKATKVDGVYTADPKKDPSATRYTSISFDEAIGRNLQVMDATAFALCRDQKLPIRVFSINKPGALKRIVQGEDEGTLVHV
>NZ_CP009323.1|WP_013698512.1|4302676_4303237_-|ribosome-recycling-factor
MSHAEVKKGVEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLADARTISVQPWEKPMVAKVEKAIRESDLGLNPATSGDAIRVPMPALTEERRRELAKVVKSEAETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKYVAEIDKLAQTKEAEIMTV
>NZ_CP009323.1|WP_013698511.1|4301843_4302626_-|di-trans,poly-cis-decaprenylcistransferase
MTYTSSTVRVPDVAAVPRHIAIIMDGNGRWATERRLPRVAGHTRGVDAVRSVVEGCARAGVEYLTLFAFSSENWRRPNDEVSFLMRLFITALEREVGKLHANGIRLRVVGELDRFEPRIRELIRRAETKTARNTRLTLTIAANYGGRWDILQATKKLIAEAVREGREVEVDETAFAQHLAMAYAPEPDLFIRTGGEQRVSNFLLWQLAYTEFYFTGKFWPDFDAAALADALASYTDRERRFGRTSAQLEPQSQDVDSLSC
>NZ_CP009323.1|WP_025096632.1|4301028_4301850_-|phosphatidate-cytidylyltransferase
MLKTRVITAVVLLAILLPVTLFAPLAAFGALIALVLVFAAWEWARLLKLGAAGSVVYALVAALVLAASMGLGVGFAPSRPLVEAAGVFWLLAGPFALWRKPTLAAGAWKPFLLAAGLLVFAACWHAVVAARAAGIPFVLSMLLVVWLADIGAYFAGKAFGRHKLAPSVSPGKTWEGAAGGWLAVMIVAGLAIGLHAFEPTLFSALAQRFGAPGAFAALSLLVAYSVIGDLFESLLKRQAGVKDSSGLLPGHGGVLDRVDALLPVLPLAVLLLG
>NZ_CP009323.1|WP_036050887.1|4299815_4301012_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MQKRLTILGSTGSIGDSTLDVVARHPDRFSVYALSAHRNGDKLVEQCLKFRPEVAVVGSAETAAAVEAKLRAAGCRTQVAYGPDALVEIARADGCDTVVAAIVGAAGLASSLAAARAGKRILLANKESLVMSGSIFMDAVRDHGAILLPVDSEHNAIFQCMPRDIAEHGGIAKIIVTASGGPFRTREPATLVDVTPDEACKHPNWSMGRKISVDSATMMNKGLEVIEAHWIFGLPSQRIEVLIHPQSVIHSLVSYKDGSVLAQLGNPDMRTPIAHALAFPERVDAGVAQLDLAQVATLNFEKPDFQRFPCLALAIQALDAGGVASTVLNAANELAVEAFLERRIGFMDIASTVDAVLNHLMNREPDGLDDVLAADAEARREAAAVIAKLPVPRAERVA
>NZ_CP009323.1|WP_036050889.1|4298419_4299802_-|RIP-metalloprotease-RseP
MNVLIELVAFAVAIGVLVVVHEYGHYSIARLCGVKVLRFSIGFGTVLLRHTSRRTGTEWTLSALPLGGYVKMLDERDPGPEGIAPADLPQAFNRQSVWKRIAIVAAGPIANFLLAILLFSTVFATGVTEPAAVVAAPAADTVAARAGFDGGETIVSIRDAQGGAAEPVRSWSDLRWKLLGATIDHRQVILGGRTGGATYDFHVDLSGFDQRSADDDYMSKLGFEPGGGALSISAVTPGSAAEQAGLQPGDRIVALDGKPVIGSGRFIDTIKSHAGRPLALRISRGGVERTLSIVPHAERDATPGANGAQVGRIGAALAMHTPTVDVRYGLLESAELGVRRTWGISVYSLKMFGRMLTGEASLKNLSGPVTIADYAGKSARLGLSAFLSFLALVSISLGVLNLLPIPVLDGGHLLYYLVEAATGKAVSERWQLILQRAGLICIVALSAIALFNDLSRLIHS
>NZ_CP009323.1|WP_013698519.1|4312081_4312615_-|peptide-deformylase
MIREILRMGDPRLLEVAKPVEAFDTPELHELVADMFETMHHANGAGLAAPQIGVGLQLIIFGFGNNARYPDAPPVPETVLINPSVEYLPPDMEEGWEGCLSVPGMRGVVSRYSKVHYSGFDQYGKRIDRIAEGFHARVVQHEYDHLIGKLYPMRITDFSKFGFAEVLFPGLDPNADD
>NZ_CP009323.1|WP_036050869.1|4312611_4314687_-|NAD-dependent-DNA-ligase-LigA
MARSPVEPPASQPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEAEHPDLITLDSPTQRVGGEAATGFTPVVHDAPMLSLNNGFSDEDIAAFDKRVADALDKAPADLAGTATDPVEYACELKFDGLAISLRYEHGRFVQAATRGDGTTGEDVTENVRTIRSIPLTLKGKNPPALLDVRGEVLMYKRDFARLNQRQREAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEGAAMPDTHSGLLDWYAGFGLPVNRERAVVKGAEGLLAFFHKVGERREALPYDIDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTRLLAIEVQVGRTGAITPVARLEPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSSLLDRRPADAAEFVMPTECPVCGSRIERLPEEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFHLGFATLAALDRFADKSAQNLLDSLEKARHTTLGRFIYALGIRHVGESTAKDLAKHFGSLQPIMDATTEQLLEVNDVGPVVAESLHQFFAEEHNRTVIAQLREKVDWPEGPPAPREPQGVLAGKTVVLTGTLPTLGRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGIPVLDEDGMHLLLKGELPS
>NZ_CP009323.1|WP_036050866.1|4314820_4316134_-|cell-division-protein-FtsZ
MDELTLGLIGVGVVVVGGIVVYNAWQGAKVRRRMPRPMPPEAADTLARQERDEDAPFIEPVRQPSPAPAVARREPTVAAPAAAADHEARVEPTFGGAPEAPADTPADLQADETLTAAGEGADHAAGEAESAEAGAAAQPAIATTAVPIDDGEPVLPAATTISSAPPTIVDRRIDCIVPIRLGASLPGERILPAAQRLRRAGSKPVHIEGKPEDGGNWELLQNGVRYEELRAAAQLANRNGPLNELEFSEFVSGVGQFADAIDGAPEFPDMLETVSMARELDGFAAQCDAQLSINVMSDGAPWSANYVQAVASQDGLLLSRDGTRFVKLDAKQNPVFMLQFGDTNFLRDDLTYKGGNMITLVLDVPVADEDILPFKLMCDYAKSLSDRIGARVVDDSRRPLPESTLVAIEQQLMKLYAKLEEAGIPAGSPVTRRLFSQ
>NZ_CP009323.1|WP_036039800.1|4316190_4319709_-|chromosome-segregation-protein-SMC
MRLSSIKLAGFKSFVDPTHFQVPGQLVGVVGPNGCGKSNIIDAVRWVLGESRASELRGESMQDVIFNGSTTRKPGSRASVELIFDNSDGRAAGQWGQYGEIAVKRVLTRDGTSSYYINNLPARRRDIQDIFLGTGLGPRAYAIIGQGMIARIIEAKPEELRVFLEEAAGVSKYKERRRETENRLHDTRENLTRVEDIVRELGANLEKLEAQAVVATKYKELLADGEEKQRLLWLLRKSEAQGEQQKQQRAIEQAQIDLEAQTAKLREVEAQLETLRVAHYAASDAMQGAQGSLYEANAEVSRLEAEIKFIVESRNRVQAQIAALTAQREQWQAQAQKAQDDLEEAEEARAMADEKAAMAEDEAAAKHDALPALESRWRDAQAQLNDERGRIAQTEQSLKLEAAHQRNADQQLMQLQQRHERLKSEAGGLDAPDEAQLEEQRMQLAEQEEILHDAQARLADAQETLPRLDAERRAAQERVQAESAQIHQLEARLAALKQLQENVQTEGKIQPWLDKHELGALPRLWKKLHVEPGWENALEAVLRERLAALEISNLDWVKAFATDAPPAKLAFFSPPPAGEPLATPAGMRAVLSLVRIDDAGLRAVLNDWLGSVFVADDLAQALAARAQLPAGGAYVVKAGHLVTRSGVQLYAADSEQAGMLARQQEIENLGRQVRAQALLADEAKTASIRAEAAHTQAAQALGEVRAQVERAQQRVHALQMEVLKLAQAHERYTQRSTQIREELEEIGAQIDEQRALRAESEANFERYDGELAELQAKFEDNQLAFEALDEELSNARQQARDLERAANDARFAARNSANRIDELKRSIQVAHDQIERVAASLEDARAELETINEQTAHTGLQDALEIRSAKEQALGAARLELDDLTAKLRALDESRLAAERAQQPLRDRITELQLKEQAARLSAEQFSEQLAAAGVDEAALLPKLTPELRPSYLQGEVTRINNAIAALGPVNMAALEELAAASERKIFLDAQSADLLAAITTLEDAIHKIDQETRTLLQGTFDQVNHHFSDLFPKLFGGGQAKLIMTGDEILDAGVQVMAQPPGKKNATIHLLSGGEKALTATALVFAMFQLNPAPFCLLDEVDAPLDDANTERFANLVRAMSSKTQFLFISHNKIAMEMAQQLIGVTMQEQGVSRIVAVDMETAAGFAQNIG
>NZ_CP009323.1|WP_036050864.1|4319836_4320781_-|DMT-family-transporter
MKGHEQSALPTLAILVGASVWGLVWYPLRMLAGLGLTGTAASALTCFCACLFVVVWRRRALVTLRWHWLLAALGVAAGITNLGFVWGTIHGEVLRVMLLFYLTPAWTAIYSHFLLRERLTWASAALAALSITGAMLMLWSPRLGLPLPSNPAEWAGLAAGLSFAMSNVLVVRISRDLPELKPEMRTATLFAGGAAFGLAAMFVEGVPPLPAPHAVTLALLLAAAIGVVTALNNLLVQYGLARVPANRASIIMLFEIVVTALSAWLFADELPGAREWLGGACIVLATLLSSRVHKAPTQAPAGDADRRDEARAMV
>NZ_CP009323.1|WP_036053312.1|4321176_4322403_+|succinyldiaminopimelate-transaminase
MNPRLDTLQPYPFEKLRALFKDVKPSAAHAPISFGIGEPKHATPALIRDAVVASLDGLASYPATAGSDALRTAIARWVERRYGIESVDAASQVLPVSGSREALFSLAQAVIDAAPRADGKSAIVLCPNPFYQIYEGAALLAGAEPVFVNSDPARNFAPDYSSVPDEVWARTQLLFVCSPGNPTGAVLTLEDWRELFALSDRHGFVIASDECYSEIYFDEAAPPLGGLDAARRLGRGFERLVMLSSLSKRSNVPGMRSGFVAGDAAILKRFLLYRTYHGAALSPVWQQASIAAWGDEEHVRENRALYAQKFAAVTPLLAEVLDVALPDAAFYLWANVARTGLSDTEFARRLHADYNVTVLPGSYLARDAHGTNPGRDFVRIALVAESAECLEGAQRIVEFCRALASQAR
>NZ_CP009323.1|WP_013698525.1|4322461_4323289_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSQQLQQIIDTAWENRAELSPKAAPAEVREAVAHAIEQLDRGSLRVAEKQNGEWIVHQWLKKAVLLSFRLEDNAPMAAGGYSQFFDKVPSKFANYTAEDFAAGGFRVVPPAVARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEISYGRIPAGSVVVAGNLPSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD
>NZ_CP009323.1|WP_036050862.1|4323288_4323645_+|arsenate-reductase
MTTVVYGIPNCDTVKKARVWLDEHGVAFDFHDFKKAGLTAAIVKGWLKDVPLETLVNRRGTTWRALPDEVKASAETEAGAIALMLDKPSVIKRPVVEVDGRVKAVGFVSDQYAALFGA
>NZ_CP009323.1|WP_036050860.1|4323745_4324885_+|succinyl-diaminopimelate-desuccinylase
MSATLALTEQLIARPSVTPDDQHCQQIMIERLAAIGFECETIASHGVTNLWAVKRGTEGRDGKLLAFAGHTDVVPTGPLEQWTSPPFIPAHRDGKLYGRGAADMKTSLAGFVVASEEFVAAHPQHRGSIAMLITSDEEGPATDGTVKVVEALGERGERLDYCIVGEPTSSATLGDMVKNGRRGSMSGELIVKGVQGHIAYPHLARNPIHLLAPALAELAAERWDEGNEYFPPTTWQVSNLHGGTGATNVIPGHVTLLFNFRFSTASTVEGLQARVHAILDKHGFDYELKWSISGLPFLTPRGDLSIALAKAIHDETGVETELSTTGGTSDGRFIARICPQVIEFGPPNASIHKIDEHVELRFIDPLKNVYRRVLEQLIA
>NZ_CP009323.1|WP_036050857.1|4324896_4325835_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MTTPATPATPAAVFGTPRDLIRYGVSRFSAAGLTFGHGSENAYDEAVYLVLHTLHLPLDTLDPFLDARLLPEEIEAVLAQLERRVEERLPAAYLTNEAWMHGHRFYVDERVIVPRSFIGELLDDGLQPYVADPEQVGAVLELCTGSGCLAVLAAEAFPHAEIDAVDLSEDALEVAEINISDYRLDHRIALHHGDLYAPLPTERLADPELRYDVILSNPPYVNADSMAALPDEYRHEPEMALAGGDDGMDIVRRILREAKKWLKEDGVLVVEIGNERHNVEAAFGGLDLIWLPTSAGDDCVFLIHAADLPHAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

185719 : 243989

uncultured_Caudovirales_phage(37.04%)

tail,capsid,portal,transposase,terminase,tRNA,protease,head,plate,integrase

attL 187855:187878|attR 232099:232122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088555423.1\|185719_186536_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.9e-08	35.9
WP_080742219.1\|186702_187251_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_080959724.1\|187353_187680_-	hypothetical protein	NA	NA	NA	NA
187855:187878	attL	NA	NA	NA	NA
WP_036050144.1\|188137_189586_-	RES domain-containing protein	NA	NA	NA	NA
WP_080742221.1\|189669_190788_-	DUF3578 domain-containing protein	NA	NA	NA	NA
WP_080742222.1\|191387_192764_+	AAA family ATPase	NA	NA	NA	NA
WP_157693215.1\|192772_193654_+	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_042286165.1\|194302_195289_+	hypothetical protein	NA	NA	NA	NA
WP_144417675.1\|195297_195723_-	hypothetical protein	NA	NA	NA	NA
WP_144417676.1\|195773_196898_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_120513474.1\|196897_197314_-	hypothetical protein	NA	NA	NA	NA
WP_036050136.1\|197959_198247_+	hypothetical protein	NA	NA	NA	NA
WP_036050134.1\|198285_199071_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.5e-129	82.9
WP_052409262.1\|199231_199861_-	hypothetical protein	NA	NA	NA	NA
WP_036050130.1\|199857_200424_-	N-acetylmuramidase	A0A0E3JI96	Rhodoferax_phage	1.8e-49	53.7
WP_017918170.1\|200420_200870_-	hypothetical protein	NA	NA	NA	NA
WP_036050129.1\|200942_201992_-	phage late control D protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.2e-84	47.8
WP_013698666.1\|202001_202208_-\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	8.4e-13	55.2
WP_036050127.1\|202182_203061_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.2e-35	37.5
WP_036050125.1\|203070_205500_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.6e-54	35.9
WP_036050123.1\|205581_205884_-\|tail	phage tail assembly protein	A0A1B2LRV6	Wolbachia_phage	1.3e-06	39.0
WP_013697850.1\|205961_206465_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	5.6e-42	51.2
WP_036050120.1\|206474_207644_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	4.8e-161	73.4
WP_036050119.1\|207715_208435_-\|tail	tail fiber assembly protein	E5E3Q6	Burkholderia_phage	1.5e-59	58.6
WP_036050116.1\|208448_210413_-\|tail	tail fiber protein	E5E3V2	Burkholderia_phage	4.0e-128	59.3
WP_036050113.1\|210400_210979_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.4e-34	47.4
WP_036050112.1\|210968_211865_-\|plate	baseplate J/gp47 family protein	A0A1J0I2M3	Salmonella_phage	8.7e-46	38.4
WP_036050111.1\|211861_212194_-	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.6e-21	49.1
WP_036050109.1\|212196_212388_-	hypothetical protein	NA	NA	NA	NA
WP_144417677.1\|212489_212930_+	hypothetical protein	NA	NA	NA	NA
WP_036050108.1\|212957_213638_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.9e-16	28.5
WP_036050107.1\|213634_214165_-	hypothetical protein	A0A1B2LRU9	Wolbachia_phage	8.5e-25	43.4
WP_036050106.1\|214154_214685_-\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	4.0e-14	30.5
WP_025099034.1\|214689_214980_-	hypothetical protein	NA	NA	NA	NA
WP_036050105.1\|214981_215977_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	1.3e-119	63.3
WP_013698682.1\|216059_216404_-\|head	head decoration protein	NA	NA	NA	NA
WP_036050104.1\|216433_217525_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.2e-49	37.2
WP_036050102.1\|217521_219012_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	2.1e-137	52.0
WP_036050101.1\|219008_219215_-	hypothetical protein	NA	NA	NA	NA
WP_080742226.1\|219225_221229_-\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	2.8e-177	52.4
WP_080742227.1\|221191_221761_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_036050092.1\|221873_222068_-	hypothetical protein	NA	NA	NA	NA
WP_080742228.1\|222287_223061_-	zinc finger-like domain-containing protein	NA	NA	NA	NA
WP_036050090.1\|223281_225789_-	virulence protein E	A0A2D1GN57	Marinobacter_phage	1.7e-94	40.6
WP_036050087.1\|226049_226433_-	hypothetical protein	NA	NA	NA	NA
WP_036035932.1\|226419_226962_-	hypothetical protein	C7BGG0	Burkholderia_phage	5.8e-29	47.6
WP_155296535.1\|227122_227848_+	hypothetical protein	NA	NA	NA	NA
WP_025099044.1\|228208_228427_+	hypothetical protein	NA	NA	NA	NA
WP_036050083.1\|228478_228841_+	hypothetical protein	NA	NA	NA	NA
WP_042286168.1\|228840_229878_+	hypothetical protein	NA	NA	NA	NA
WP_036050080.1\|229979_230372_+	hypothetical protein	NA	NA	NA	NA
WP_013698698.1\|230380_230617_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_036050065.1\|230573_231875_-\|integrase	integrase family protein	C7BGE7	Burkholderia_phage	5.7e-139	57.2
WP_080742231.1\|232033_234742_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	5.7e-24	23.9
232099:232122	attR	NA	NA	NA	NA
WP_052409263.1\|234725_236018_+	hypothetical protein	NA	NA	NA	NA
WP_013698701.1\|236075_236624_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_172535111.1\|236656_237883_+	cupin domain-containing protein	NA	NA	NA	NA
WP_036050063.1\|238503_239280_-	MBL fold metallo-hydrolase	A0A2I7SDH3	Paenibacillus_phage	5.4e-28	33.8
WP_036050060.1\|239284_240430_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_025099054.1\|240539_241442_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_036053110.1\|241486_242011_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_013698707.1\|242117_243320_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_036050057.1\|243329_243989_-\|protease	site-2 protease family protein	NA	NA	NA	NA

DBSCAN-SWA_2

514926 : 523742

Leptospira_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080742194.1\|514926_516228_-	DNA-packaging protein	S5VY04	Leptospira_phage	2.2e-29	39.0
WP_042286051.1\|516305_516920_-	hypothetical protein	G8C7P2	Escherichia_phage	1.2e-43	49.5
WP_036049752.1\|516971_517157_-	hypothetical protein	NA	NA	NA	NA
WP_042286049.1\|517153_517930_-	hypothetical protein	NA	NA	NA	NA
WP_127841027.1\|517997_518309_-	hypothetical protein	NA	NA	NA	NA
WP_127841026.1\|518305_518560_-	hypothetical protein	NA	NA	NA	NA
WP_045577484.1\|518600_520346_-	toprim domain-containing protein	A0A0F7L6A5	uncultured_marine_virus	2.3e-98	36.9
WP_052409243.1\|520342_521203_-	hypothetical protein	V5URT9	Shigella_phage	1.6e-09	34.0
WP_036049744.1\|521195_521432_-	hypothetical protein	NA	NA	NA	NA
WP_080742188.1\|521428_521707_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_036049742.1\|521808_522471_+	hypothetical protein	A0A0U4JEE2	Pseudomonas_phage	4.6e-20	35.2
WP_036049740.1\|522560_522749_+	hypothetical protein	NA	NA	NA	NA
WP_127841025.1\|522901_523255_+	hypothetical protein	NA	NA	NA	NA
WP_036049735.1\|523247_523742_+	helix-turn-helix transcriptional regulator	E5AGE6	Erwinia_phage	8.3e-06	45.1

DBSCAN-SWA_3

764802 : 775700

Klosneuvirus(14.29%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036049482.1\|764802_767640_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	6.5e-79	25.9
WP_013699140.1\|767642_768143_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_036049481.1\|768247_769459_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	8.2e-39	31.9
WP_013699142.1\|769539_769986_+	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	8.7e-47	61.6
WP_025098176.1\|770106_772404_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.1e-169	42.3
WP_036049478.1\|772400_772715_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	7.6e-13	44.6
WP_004196460.1\|773246_773450_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_036049476.1\|773587_775180_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_013699147.1\|775334_775700_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	3.6e-06	29.8

DBSCAN-SWA_4

1594549 : 1677188

Burkholderia_phage(60.0%)

holin,tail,tRNA,plate,integrase

attL 1649833:1649852|attR 1689659:1689678

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036048694.1\|1594549_1596520_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_036048693.1\|1596516_1597206_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_013696165.1\|1597262_1598033_+	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	1.7e-21	31.4
WP_013696166.1\|1598071_1598959_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	3.8e-17	37.3
WP_036048692.1\|1598966_1600100_+	anion permease	NA	NA	NA	NA
WP_013696168.1\|1600364_1600895_+	ATP synthase subunit I	NA	NA	NA	NA
WP_025097717.1\|1601056_1601908_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_013696170.1\|1601984_1602254_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_013696171.1\|1602380_1602851_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_017917925.1\|1602853_1603393_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_036048690.1\|1603437_1604979_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_013696174.1\|1605051_1605930_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_017917924.1\|1606002_1607397_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_013696176.1\|1607556_1607982_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_036052913.1\|1608235_1609933_+	AMP-binding protein	Q75ZG1	Hepacivirus	3.0e-39	27.1
WP_036048688.1\|1610607_1611468_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_080742130.1\|1611618_1612746_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_036048685.1\|1613274_1615527_+	primosomal protein N'	NA	NA	NA	NA
WP_036048683.1\|1616018_1619942_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013696183.1\|1620028_1621168_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_036048681.1\|1621445_1622600_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_036035265.1\|1622631_1623441_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_025097728.1\|1623498_1624110_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_017919796.1\|1624206_1624638_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_036048679.1\|1624726_1627411_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.6e-135	45.0
WP_036048677.1\|1627445_1627634_+	hypothetical protein	NA	NA	NA	NA
WP_036048676.1\|1627725_1628205_-	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_025097733.1\|1628435_1629845_+	ethanolamine permease	NA	NA	NA	NA
WP_036048674.1\|1629882_1631280_+	ethanolamine ammonia-lyase subunit EutB	NA	NA	NA	NA
WP_013696192.1\|1631276_1632071_+	ethanolamine ammonia-lyase subunit EutC	NA	NA	NA	NA
WP_036035280.1\|1632160_1633681_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_036048672.1\|1634018_1635161_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_036048671.1\|1635222_1636308_-	ADP-heptose--LPS heptosyltransferase	NA	NA	NA	NA
WP_013696196.1\|1636353_1638075_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_013696197.1\|1638280_1639669_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_013696198.1\|1639698_1640844_-	alginate lyase family protein	NA	NA	NA	NA
WP_036048669.1\|1640987_1643918_-	aminomethyl-transferring glycine dehydrogenase	M4QFZ1	Prochlorococcus_phage	2.0e-256	50.4
WP_036048666.1\|1643981_1644365_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_017920319.1\|1644408_1645527_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_013696202.1\|1646410_1646815_-	hypothetical protein	NA	NA	NA	NA
WP_036048664.1\|1647018_1648071_-	oxidoreductase	NA	NA	NA	NA
WP_036035288.1\|1648552_1650637_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	4.4e-101	35.4
1649833:1649852	attL	NA	NA	NA	NA
WP_036048662.1\|1650734_1651673_-	cytochrome c5 family protein	NA	NA	NA	NA
WP_036048660.1\|1652960_1654115_-	ATP-binding protein	NA	NA	NA	NA
WP_042285421.1\|1654485_1655592_-\|integrase	site-specific integrase	A0A1S5NNJ1	Burkholderia_phage	1.5e-159	78.2
WP_036048658.1\|1656402_1659195_-	toprim domain-containing protein	E5E3N5	Burkholderia_phage	0.0e+00	85.8
WP_017920741.1\|1659197_1659401_-	hypothetical protein	NA	NA	NA	NA
WP_036048656.1\|1659416_1660004_+	hypothetical protein	NA	NA	NA	NA
WP_025097752.1\|1660000_1660249_-	ogr/Delta-like zinc finger family protein	A4JWR6	Burkholderia_virus	3.6e-34	86.6
WP_013696212.1\|1660358_1660562_-	hypothetical protein	NA	NA	NA	NA
WP_036048654.1\|1660653_1661127_+	transcriptional regulator	E5E3U2	Burkholderia_phage	1.1e-36	56.4
WP_036048653.1\|1661323_1661611_+	hypothetical protein	NA	NA	NA	NA
WP_036048652.1\|1661806_1662904_-	phage late control D family protein	A4JWS1	Burkholderia_virus	1.5e-119	61.2
WP_036048649.1\|1662903_1663401_-\|tail	phage tail protein	A4JWS2	Burkholderia_virus	1.4e-45	71.8
WP_036048648.1\|1663415_1666058_-	hypothetical protein	E5E3P9	Burkholderia_phage	2.5e-32	26.4
WP_036048646.1\|1666054_1666174_-\|tail	GpE family phage tail protein	E5E3U7	Burkholderia_phage	1.6e-11	83.8
WP_036048644.1\|1666182_1666518_-\|tail	phage tail assembly protein	E5E3U8	Burkholderia_phage	6.3e-34	81.4
WP_013696219.1\|1666587_1667097_-\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	2.3e-67	69.8
WP_025097759.1\|1667124_1668297_-\|tail	phage tail sheath protein	E5E3V0	Burkholderia_phage	1.4e-181	80.5
WP_036048642.1\|1668346_1669207_-\|tail	tail fiber assembly protein	A4JWS8	Burkholderia_virus	9.2e-77	70.9
WP_036048640.1\|1669225_1671814_-	phage Tail collar domain protein	E5E3V2	Burkholderia_phage	5.9e-228	54.8
WP_036035313.1\|1671816_1672374_-\|tail	phage tail protein I	E5E3V3	Burkholderia_phage	2.4e-78	80.0
WP_036048639.1\|1672351_1673257_-\|plate	baseplate J/gp47 family protein	E5E3V4	Burkholderia_phage	6.8e-131	79.1
WP_025097764.1\|1673253_1673616_-	GPW/gp25 family protein	E5E3V5	Burkholderia_phage	1.7e-45	75.0
WP_036052908.1\|1673612_1674308_-\|plate	phage baseplate assembly protein V	E5E3V6	Burkholderia_phage	5.8e-90	74.5
WP_036048637.1\|1674541_1674958_-\|tail	phage tail protein	A4JWT7	Burkholderia_virus	6.9e-30	47.4
WP_036048635.1\|1674950_1675115_-	hypothetical protein	K4PAX1	Burkholderia_phage	4.2e-07	75.7
WP_036048634.1\|1675092_1675542_-	protein lysB	E5E3W1	Burkholderia_phage	3.6e-40	64.4
WP_013696230.1\|1675538_1676351_-	N-acetylmuramidase family protein	A4JWU0	Burkholderia_virus	1.4e-111	75.6
WP_013696231.1\|1676347_1676620_-\|holin	phage holin family protein	K4NX91	Burkholderia_phage	1.3e-29	76.7
WP_013696232.1\|1676621_1676966_-	membrane protein	K4NZQ3	Burkholderia_phage	6.1e-40	80.5
WP_013696233.1\|1676981_1677188_-\|tail	tail protein X	K4PAW7	Burkholderia_phage	2.1e-19	70.6
1689659:1689678	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1887432 : 1938961

Pithovirus(25.0%)

plate,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013696412.1\|1887432_1888158_+\|transposase	transposase	NA	NA	NA	NA
WP_036033506.1\|1888438_1893139_+	glutamate synthase subunit alpha	NA	NA	NA	NA
WP_036033510.1\|1893235_1894702_+	glutamate synthase subunit beta	NA	NA	NA	NA
WP_036048478.1\|1894804_1896562_-	ABC transporter ATP-binding protein/permease	M1HP82	Acanthocystis_turfacea_Chlorella_virus	1.7e-05	31.1
WP_036048477.1\|1897294_1898452_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013696417.1\|1898479_1898677_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_013696418.1\|1898718_1899534_+	thiazole synthase	NA	NA	NA	NA
WP_042284870.1\|1899530_1900652_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_013696420.1\|1900974_1901796_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-20	30.2
WP_013696421.1\|1901792_1902560_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_013696422.1\|1902575_1903082_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_036048476.1\|1903137_1904058_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_013696424.1\|1904167_1904794_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_025101319.1\|1904790_1905060_+	STAS domain-containing protein	NA	NA	NA	NA
WP_013696426.1\|1905267_1906194_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	2.0e-24	32.9
WP_013696427.1\|1906190_1906946_+	ABC transporter permease	NA	NA	NA	NA
WP_013696428.1\|1906966_1907206_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_036048475.1\|1907222_1908578_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_017918341.1\|1908574_1909231_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_013696431.1\|1909271_1910600_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_036048474.1\|1910758_1911829_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	1.7e-19	23.0
WP_017918339.1\|1911911_1912499_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_013696434.1\|1912574_1913195_+	NAAT family transporter	NA	NA	NA	NA
WP_013696435.1\|1913191_1913833_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_013696436.1\|1913995_1914751_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_013696437.1\|1914837_1915611_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_036048472.1\|1915610_1916036_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_017918336.1\|1916032_1916398_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_042284878.1\|1916461_1916854_+	membrane protein	NA	NA	NA	NA
WP_013696441.1\|1916879_1917245_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_013696442.1\|1917360_1917600_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_013696443.1\|1917626_1918181_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_013696444.1\|1918228_1919008_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	8.4e-29	31.9
WP_013696445.1\|1919166_1920375_-	Do family serine endopeptidase	W5SAB9	Pithovirus	2.0e-08	30.2
WP_036048471.1\|1920396_1921143_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_013696447.1\|1921363_1921984_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_013696448.1\|1921983_1923366_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_036052886.1\|1923388_1924147_+	cytochrome c1	NA	NA	NA	NA
WP_012734444.1\|1924242_1924854_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_013696450.1\|1924921_1925422_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.5e-20	45.8
WP_036048470.1\|1925606_1925891_-	hypothetical protein	NA	NA	NA	NA
WP_036048469.1\|1926769_1927213_+	hypothetical protein	NA	NA	NA	NA
WP_036048468.1\|1927599_1928784_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.2e-18	32.4
WP_013696459.1\|1928880_1929666_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_036048467.1\|1929662_1931009_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_036048466.1\|1931109_1931727_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_042284862.1\|1932100_1932772_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_013696463.1\|1932808_1933327_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_013696464.1\|1933342_1934833_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_013696465.1\|1934909_1935413_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_013696466.1\|1935501_1935984_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_036048462.1\|1936061_1937900_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_017918328.1\|1937863_1938961_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_6

2235190 : 2244157

Chrysochromulina_ericina_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036029636.1\|2235190_2237137_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.2e-146	49.8
WP_036029634.1\|2237352_2238489_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.0e-22	27.6
WP_063769134.1\|2238511_2240356_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	1.2e-54	36.5
WP_013696727.1\|2240453_2241269_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	6.3e-35	30.9
WP_013696728.1\|2241315_2241999_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	6.7e-06	29.3
WP_036048161.1\|2241995_2242526_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_036048159.1\|2242555_2244157_-	polynucleotide adenylyltransferase PcnB	A0A1B0V011	Roseobacter_phage	3.1e-17	28.8

DBSCAN-SWA_7

2460791 : 2470170

Bacillus_virus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013696917.1\|2460791_2461910_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.0e-23	34.5
WP_036052466.1\|2462026_2462818_-	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	2.3e-10	30.5
WP_036037547.1\|2462956_2463919_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.9e-62	44.2
WP_013696920.1\|2464213_2466526_+	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	3.4e-86	50.8
WP_013696921.1\|2466570_2467254_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_013696922.1\|2467470_2468781_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.2e-80	40.2
WP_036052464.1\|2468868_2470170_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.8e-93	50.9

DBSCAN-SWA_8

2549981 : 2558303

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036037641.1\|2549981_2551382_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.4e-77	37.3
WP_013697004.1\|2551350_2552328_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	3.3e-14	27.2
WP_013697005.1\|2552384_2553377_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	8.2e-29	32.7
WP_036052397.1\|2553452_2553788_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_036053687.1\|2554023_2554926_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.8e-51	39.9
WP_036052395.1\|2555026_2556253_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_013697009.1\|2556433_2557357_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.2e-44	34.6
WP_036053684.1\|2557463_2558303_-	alpha/beta hydrolase	Q6TUZ7	Yaba_monkey_tumor_virus	1.4e-13	26.7

DBSCAN-SWA_9

3349425 : 3360315

EBPR_podovirus(22.22%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036051794.1\|3349425_3349782_+	phage family protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.2e-36	68.0
WP_124083800.1\|3349897_3350314_+	hypothetical protein	C7BGG3	Burkholderia_phage	4.1e-14	43.2
WP_036051792.1\|3350419_3351199_+	hypothetical protein	NA	NA	NA	NA
WP_042283651.1\|3351206_3351977_+\|terminase	terminase small subunit	I6NV32	Burkholderia_virus	2.1e-72	61.2
WP_052409082.1\|3351973_3353236_+\|terminase	PBSX family phage terminase large subunit	L7TKU1	Rhizobium_phage	8.9e-105	45.2
WP_080741957.1\|3353216_3355355_+	hypothetical protein	F8TUN9	EBPR_podovirus	1.0e-84	33.7
WP_036051790.1\|3355356_3355662_+	hypothetical protein	NA	NA	NA	NA
WP_036051789.1\|3355765_3356515_+	hypothetical protein	A0A2I7RQ07	Vibrio_phage	1.5e-06	37.1
WP_036051788.1\|3356523_3357732_+	hypothetical protein	A0A1B1IR95	uncultured_Mediterranean_phage	3.0e-57	36.1
WP_144417709.1\|3357731_3358181_+	hypothetical protein	NA	NA	NA	NA
WP_036051786.1\|3358177_3358891_+	hypothetical protein	F8TUN4	EBPR_podovirus	4.7e-18	30.0
WP_036051785.1\|3358890_3360315_+	hypothetical protein	A0A0E3JSB2	Rhodoferax_phage	1.3e-96	41.6

DBSCAN-SWA_10

3459534 : 3499313

Burkholderia_virus(32.14%)

tail,capsid,terminase,portal,head,integrase

attL 3449351:3449366|attR 3467937:3467952

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3449351:3449366	attL	NA	NA	NA	NA
WP_045577496.1\|3459534_3460503_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	7.2e-30	37.6
WP_013697841.1\|3460545_3460761_+	TOBE domain-containing protein	NA	NA	NA	NA
WP_013697842.1\|3460915_3461113_+	hypothetical protein	NA	NA	NA	NA
WP_013697843.1\|3461148_3461406_+	hypothetical protein	NA	NA	NA	NA
WP_042283625.1\|3461644_3462766_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_042283623.1\|3462762_3463002_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_042283620.1\|3462998_3463679_-	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	1.8e-43	47.4
WP_042283618.1\|3463675_3464674_-	phage Gp37/Gp68 family protein	Q8W6R4	Burkholderia_virus	6.6e-95	56.5
WP_042283616.1\|3464670_3464907_-	hypothetical protein	A9YWV8	Burkholderia_phage	1.1e-27	76.9
WP_042283614.1\|3464903_3465278_-	DUF4031 domain-containing protein	Q6V7P5	Burkholderia_virus	4.3e-31	57.3
WP_052409077.1\|3465274_3465970_-	helix-turn-helix transcriptional regulator	Q6V7U1	Burkholderia_virus	1.9e-16	58.2
WP_042283610.1\|3465966_3466407_-	hypothetical protein	NA	NA	NA	NA
WP_052409076.1\|3466403_3468062_-	helix-turn-helix transcriptional regulator	Q6V7U1	Burkholderia_virus	1.1e-14	57.7
3467937:3467952	attR	NA	NA	NA	NA
WP_042283607.1\|3468080_3469265_-	RtcB family protein	A0A291L9X2	Bordetella_phage	4.2e-189	83.4
WP_042283602.1\|3469608_3470301_-	hypothetical protein	Q6JII4	Burkholderia_virus	8.5e-57	51.5
WP_042283599.1\|3470406_3470694_-	hypothetical protein	NA	NA	NA	NA
WP_042283596.1\|3470699_3471014_-	hypothetical protein	NA	NA	NA	NA
WP_042283594.1\|3471278_3471491_-	hypothetical protein	NA	NA	NA	NA
WP_144417712.1\|3471489_3471738_+	hypothetical protein	NA	NA	NA	NA
WP_042283700.1\|3472065_3472263_-	hypothetical protein	Q3HQX5	Burkholderia_phage	3.5e-16	70.2
WP_144417713.1\|3473055_3473640_+	hypothetical protein	NA	NA	NA	NA
WP_042283587.1\|3473679_3473880_+	hypothetical protein	NA	NA	NA	NA
WP_144417714.1\|3473924_3474206_-	hypothetical protein	NA	NA	NA	NA
WP_111946523.1\|3474198_3474447_-	hypothetical protein	NA	NA	NA	NA
WP_042283583.1\|3474780_3475155_-	helix-turn-helix transcriptional regulator	A9YWX7	Burkholderia_phage	7.6e-36	70.4
WP_080741952.1\|3475239_3475488_+	helix-turn-helix domain-containing protein	A9YWX8	Burkholderia_phage	1.7e-28	78.7
WP_155296500.1\|3475489_3475654_+	hypothetical protein	NA	NA	NA	NA
WP_080741951.1\|3475754_3475979_+	hypothetical protein	NA	NA	NA	NA
WP_042283582.1\|3475975_3476194_+	hypothetical protein	NA	NA	NA	NA
WP_042283580.1\|3476273_3478037_+	DNA cytosine methyltransferase	A9YX21	Burkholderia_phage	1.1e-132	70.9
WP_042283578.1\|3478033_3478903_+	hypothetical protein	A9YWY3	Burkholderia_phage	3.4e-111	69.9
WP_042283576.1\|3478899_3480036_+	site-specific DNA-methyltransferase	Q8W6P4	Burkholderia_virus	7.0e-133	63.9
WP_042283574.1\|3480032_3481007_+	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	2.2e-143	76.8
WP_080741950.1\|3481029_3481890_+	ParB N-terminal domain-containing protein	C7BGF1	Burkholderia_phage	2.5e-66	53.8
WP_042283573.1\|3481889_3482153_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_052409074.1\|3482149_3483241_+	hypothetical protein	C5IHL2	Burkholderia_virus	9.6e-31	61.5
WP_045577498.1\|3483248_3483452_+	hypothetical protein	NA	NA	NA	NA
WP_080741949.1\|3483624_3483960_+	DUF1064 domain-containing protein	T1SA23	Salmonella_phage	1.3e-31	61.5
WP_042283566.1\|3483967_3484297_+	DUF4406 domain-containing protein	H2BD42	Pseudomonas_phage	1.2e-21	51.1
WP_042283563.1\|3484287_3484632_+	hypothetical protein	NA	NA	NA	NA
WP_111946389.1\|3484628_3484907_+	hypothetical protein	NA	NA	NA	NA
WP_042283558.1\|3484903_3485269_+	DUF2591 family protein	NA	NA	NA	NA
WP_042283555.1\|3485265_3485562_+	hypothetical protein	NA	NA	NA	NA
WP_042283553.1\|3485558_3485987_+	DUF1364 family protein	Q6JIF7	Burkholderia_virus	4.4e-48	67.6
WP_144417716.1\|3485979_3486579_+	hypothetical protein	NA	NA	NA	NA
WP_111946385.1\|3486759_3487419_+	DNA-binding protein	Q3HR05	Burkholderia_phage	1.1e-26	39.0
WP_144417717.1\|3487670_3487853_+	hypothetical protein	NA	NA	NA	NA
WP_088555447.1\|3487840_3488530_+	hypothetical protein	A0A1W6JTE1	Pseudomonas_phage	1.6e-07	25.6
WP_144417718.1\|3488791_3489379_+	hypothetical protein	NA	NA	NA	NA
WP_042283543.1\|3489371_3491465_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	1.6e-87	32.7
WP_042283541.1\|3491470_3491740_+	hypothetical protein	NA	NA	NA	NA
WP_042283538.1\|3491739_3493392_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	2.3e-76	33.5
WP_042283536.1\|3493388_3494273_+	S49 family peptidase	A0A1I9KF73	Aeromonas_phage	7.3e-53	38.7
WP_157693196.1\|3494299_3494935_+	hypothetical protein	NA	NA	NA	NA
WP_042283534.1\|3494977_3495634_+\|head	head decoration protein	NA	NA	NA	NA
WP_042283532.1\|3495705_3496743_+\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	2.8e-64	39.8
WP_042283530.1\|3496744_3497062_+	hypothetical protein	NA	NA	NA	NA
WP_042283527.1\|3497058_3497622_+	hypothetical protein	NA	NA	NA	NA
WP_042283526.1\|3497631_3497832_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_042283523.1\|3497828_3499313_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	1.9e-90	42.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP009321

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009321_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009321_1

26674-26775

Orphan

Consensus_repeat	Method
ATAAAGTCGGAGATTGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP009321_1

>merge|NZ_CP009321|1|26674-26775|PILER-CR
ATAAAGTCGGACATTGCGAATGCGCCGCAACTGAGGTCGGATATAAAGTCGGAGATTGCGGGTGGTGATCCCTAAATCCCCCGGATAAAGTCCGAGATTGCG

>NZ_CP009321|1|1|26674-26775|PILER-CR
ATAAAGTCGGACATTGCG	AATGCGCCGCAACTGAGGTCGGAT
ATAAAGTCGGAGATTGCG	GGTGGTGATCCCTAAATCCCCCGG
ATAAAGTCCGAGATTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009321.1\|WP_013700011.1\|31345_32017_-\|Lar-family-restriction-alleviation-protein	unknown	unknown	gnl\|CDD\|379576
NZ_CP009321.1\|WP_036047803.1\|20450_20813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009321.1\|WP_036047784.1\|29682_30129_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009321.1\|WP_013699999.1\|22208_22796_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180777
NZ_CP009321.1\|WP_036047786.1\|29308_29686_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009321.1\|WP_167547482.1\|24952_25108_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009321.1\|WP_036047778.1\|33823_34135_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009321.1\|WP_013700017.1\|40455_40908_+\|PRTRC-system-protein-E	unknown	unknown	gnl\|CDD\|274758
NZ_CP009321.1\|WP_013700003.1\|24701_24956_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009321.1\|WP_036047773.1\|35763_37314_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP009321.1\|WP_036047792.1\|25225_25570_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009321.1\|WP_036047788.1\|28044_29199_+\|integrase-domain-containing-protein	unknown	unknown	gnl\|CDD\|271177
NZ_CP009321.1\|WP_013700016.1\|38700_40380_+\|PRTRC-system-ParB-family-protein	unknown	unknown	gnl\|CDD\|274755
NZ_CP009321.1\|WP_036047774.1\|34998_35748_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP009321.1\|WP_080742017.1\|19325_20027_-\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP009321.1\|WP_036047795.1\|23190_24333_+\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|274285
NZ_CP009321.1\|WP_036047790.1\|25579_26584_-\|PRTRC-system-protein-D	unknown	unknown	gnl\|CDD\|274757
NZ_CP009321.1\|WP_006400880.1\|37362_37500_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009321.1\|WP_080742016.1\|21363_22197_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009321.1\|WP_036047800.1\|20926_21376_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009321.1\|WP_036047788.1\|28044_29199_+\|integrase-domain-containing-protein	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.37047e-10
NZ_CP009321.1\|WP_013700016.1\|38700_40380_+\|PRTRC-system-ParB-family-protein	gnl\|CDD\|274755	TIGR03734, PRTRC_parB, PRTRC system ParB family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family the member related to ParB, and is designated PRTRC system ParB family protein.	0
NZ_CP009321.1\|WP_013699999.1\|22208_22796_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|180777	PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional.	1.01882e-80
NZ_CP009321.1\|WP_013700011.1\|31345_32017_-\|Lar-family-restriction-alleviation-protein	gnl\|CDD\|379576	pfam14354, Lar_restr_allev, Restriction alleviation protein Lar. This family includes the restriction alleviation protein Lar encoded by the Rac prophage of Escherichia coli. This protein modulates the activity of the Escherichia coli restriction and modification system.	0.00139924
NZ_CP009321.1\|WP_080742017.1\|19325_20027_-\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	5.26609e-17
NZ_CP009321.1\|WP_013700017.1\|40455_40908_+\|PRTRC-system-protein-E	gnl\|CDD\|274758	TIGR03741, PRTRC_E, PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.	5.72499e-24
NZ_CP009321.1\|WP_036047795.1\|23190_24333_+\|toprim-domain-containing-protein	gnl\|CDD\|274285	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.	3.54784e-06
NZ_CP009321.1\|WP_036047790.1\|25579_26584_-\|PRTRC-system-protein-D	gnl\|CDD\|274757	TIGR03739, PRTRC_D, PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.	1.92763e-97
NZ_CP009321.1\|WP_036047773.1\|35763_37314_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.75697e-32
NZ_CP009321.1\|WP_036047774.1\|34998_35748_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	3.06371e-87

>NZ_CP009321.1|WP_036047790.1|25579_26584_-|PRTRC-system-protein-D
MKTAVFAIDVGYGNTKYAHRAANNAVASGMFPSLAPLAASRSIAGYGESVLTARKVARIVVDQVEYEVGPDVSLTAAYGNTGRALADDYVLSANYAALLFGAVHFAGVDHIERLVLGLPVHNMKKYAAELKERFTGQLDFGVGRVTIDKVMVIPQPLGSLVLASSNRQGGFGRDVEHLVVDVGYFTTDWVYANGFAMDDKRSGGMPGGASQIYQRIAALIARDQSDEVEDIERIDKALREQTPFFFYGSQIDLAPYLEMAQPLISGVVKEMQNNVGRLPNVRSIILSGGGAALYATVIRRAFPRVVIEVIDAPCLANVRGFLLVGESSASRERR
>NZ_CP009321.1|WP_036047792.1|25225_25570_-|hypothetical-protein
MSDKIEMTITINELVSPLLFERLSSCSSARRRAAVLKALAESALRKELIHQVASARPAVAAAAAVASPMPRHDGPIRTAGKVDSDEFRVLSVGDGSEDRPAFDDGLSDQLGAWT
>NZ_CP009321.1|WP_167547482.1|24952_25108_-|hypothetical-protein
MLELIEWIRNGELIHKLASPYFWLAMGATAIAAQYFVRGLRAPKANVEDQQ
>NZ_CP009321.1|WP_013700003.1|24701_24956_-|hypothetical-protein
MNAITSTLSTVALGFRALPFIVRRIFLVLGYTVLFTFGAFLHNRGVGDLAFLCLLVGAIGTFWASGCWHIVKFALLLALMVSRD
>NZ_CP009321.1|WP_036047795.1|23190_24333_+|toprim-domain-containing-protein
MRELKKLVLANLDWSNIFPHYIDSRFLSGKGRWWTCPICDGEETFRIFPAERDPNGGWHCARCLKGGTGVQLIHEVTGKSYREIYHELETGNYHGGIPAAVVRKASRFPARPEKTDEQKCREMQAAWDGAAPLTADSPAWKYLSNRIPGLEIVWIGRDVRCHPGMEYIDAFGKKQGAFPVMLQRARSQAGKPRRIHRTYLTCDGVKVPFLTKKGKSRAKLEMSAPAGSFGSSVLLNTRRSRTLALAEGAETGFAVVARYENRIEVRCLLNCGGLEHADINWDDYDHVMIYADSDKLDERRGFRPGEHHAQVLAERIRKHGKRVSIVKSVVEGVDFCDVWKLQFQRRVQQRDLAQARLLRREEARRRNLKRIRSSEMCAAM
>NZ_CP009321.1|WP_013699999.1|22208_22796_+|single-stranded-DNA-binding-protein
MASVNKVIIVGNLGADPEVRYLPSGDAVANLRVATTDRYKDKATNDFKEVTEWHRVSFFGRLAEIANEYLKKGSAIYVEGKLRTRKWQGQDGQDRYSTEIVGDHLQMLGGRNGGSRGEGGDQGGYNEFEQGTRRSASPSDSRQPSGQPRANAAARPQRSASAATQQSYGGGGGFAEVDDDIPFHLHLPRAAWAAI
>NZ_CP009321.1|WP_080742016.1|21363_22197_+|hypothetical-protein
MGSVGMVLARLLAQAFPGGPRNSTAAPSTSSAPAERTVGSGAANETFVTIGGVAHLFVDEGDCVVEFAPAFDEAPGDTMFGTKILPSLAPHWALKHEHSVPLKEAIAIAIRRGSAPASTPLTSTSSSAVADRRPAPPPDASRSAHRGESAGRRVSSMHESSLGRNRAVGHDYASRSSVDKGRISGWGEREFLDRRPGVSRTYRSFALCLDTSNGERVLQGEGLKEAIAECGCHVGDTVVVKRLRKIKVAAYREDDGTPIYKNGQQVMWDKWLWSITK
>NZ_CP009321.1|WP_036047800.1|20926_21376_+|hypothetical-protein
MEPHVAGWQLDIFGSASPILISPPKPDPLPDPDLWEPHVRERLAEAVVFFALDSRHSDNVPEALIDCAEMLHHRLCNRPVDKADYYATLGWIMELWTGAIPYQVVCALGRVRPRAMQDAIRDVPLLNYDFNRLKRWCSGQLSMEAQWAA
>NZ_CP009321.1|WP_036047803.1|20450_20813_+|hypothetical-protein
MLKFLFIGALKSPGKFLALCVALYLAAHSIIVAAFVVIAAVGYFKSNAKKEPQAPNRESVDGHDAANARQQTKRGQAETAGPDVQVAPAPQRQYAKSAAVIPINARASSARTQSIKMGTK
>NZ_CP009321.1|WP_080742017.1|19325_20027_-|NERD-domain-containing-protein
MVWTIILLCGAWTLYKRWKKSRPHHQSPRPVTRSQASGDAGEARVNAELRRILGKLCGTDFYVHPTALLLLHAPGTAFPTAEVDHLVVTPFGIFVVETKNWAGAILPGRTADHVVCQLPGGRKEDRRSPISQNRAKVAFLRGTLPATWDVQGLGVFSNDACSLSPDLPLTLVGLRDLDYWLRTQRDHHVKSGKPNINVSAAWNVVRRLSVDDPTGSALSAHRLKVAGNLAVNK
>NZ_CP009321.1|WP_036047788.1|28044_29199_+|integrase-domain-containing-protein
MAAILNVRAIVGRYRLSPELRDALLVLFSEHVAEIHSTTRISMRALSIKTQEYRAMAICKAFVELREGGFALQTPWSLKAKHIKYLVERWVEDKQSGGTIENKLTYMRALAQWMGKANLVGTLADYVDRRGAGLERNYVATEDKSWVANGVDAGAKIEEISRTCPYTAVQLKLQAAFGLRIEESFMLRPLEAVRDSRTLDVTRGTKGGRPRQVPIERKIAILEEAARLSNGVTGSTIPAGRTLKQWRDWYYYVLAKHGVTKNGIGVTSHGLRHEYLQRLYEEVAEVPAPIKGSAARPDPAAHAEAKRRVVVAAGHSRPSKANAYLSTFARQAELKKALPTVGETKAALEAAGGNKSHAAAALGISRQALYRLLGSASSRGSSAT
>NZ_CP009321.1|WP_036047786.1|29308_29686_-|hypothetical-protein
MTSIDSTHAGENAPEGSLGAARRPPQVPAANDEEPNQVIFVVQAVTMYEGSDPVRAFATREAAESFAQRCRDHEDARRDPPRVDAPDEEWQAWSEANHAWELSHPAEPFSRRENYAVMPLAFDPS
>NZ_CP009321.1|WP_036047784.1|29682_30129_-|hypothetical-protein
MATRPEDRRHASSPPPATRSRILERADNRCEQCHVANGDAIVRGIEKDAGTFQRFEGDGEVFAAEDGRLLGYCKASEYCGCKWTRVVLAIVRLDTVRENVSDDQLKALCQRCRLAHDAERRRVNAAATRRSRWAIGDLFDVDATDGAE
>NZ_CP009321.1|WP_013700011.1|31345_32017_-|Lar-family-restriction-alleviation-protein
MIEQLYPCEHCGGRPAVGRSQRLIDSDDNRRFDFSQFGRLGGPPRIGDVLPRPPEAPKTEALVCIYCTGCGMSTQWETVGDDETAAKDRCAKTWNRRLNRPAVSENELRGLIEKELGACDAQLVLDMLSRANGNWDEIGPIFKMLAQRIVDATVVTFDTWPIAPVLEDASRFRKLVQLAKWIEVDGEDYIQFPKIHSPREHRDFLFEDRIAIAVDGMPDRDRW
>NZ_CP009321.1|WP_036047778.1|33823_34135_-|hypothetical-protein
MMIVTLVAVVTRLRHDYQVIAGCAIAALFATSSALSALRSQLARWRRQRDANEKMIMEQRFPFCHVTRLSSGEWFLTEKETGREYKQPARPMTKANASGGGTQ
>NZ_CP009321.1|WP_036047774.1|34998_35748_-|ATP-binding-protein
MLMQQTLTQLKSLKLDGMARAFEEQAALTASTSLSFEERFGMVVERELAWRDTRRLERLLKSAKLKNPQACIEDIEYRQSRGIDKSVVAALAGCDWIRNAQNLILTGPTGAGKTWIACAFGQQACRQGFSVMYVRVARLFEELKIAHGDGSFTRRLAQLAKMDVLLLDDWGLQDLDQAARNDLLEVLDDRVGTRSTIITSQLPLEHWHAWLQDPTLADAILDRLVHQAHKLPLKGESMRKTNAKQSSAS
>NZ_CP009321.1|WP_036047773.1|35763_37314_-|IS21-family-transposase
MPAHRMSMRKLKEVLRLKWACGLSHRQISRAIGISVGAISAYAARASAAGLDWATVEPLADDELEIRLDLPEETAVPTRRVEPDYAAMHRDLRRKGVTLQLLWEEYVEAHPGQRTYRYTQFCQRYKDWAAALKRSMRQQHRAGEKLFADFAGQTVPILGRDGGVAFKAHVFVAVLGASNYTYACATRSETMPDWIGSLIDALEFYGGVPELLVPDNPKALIAKADRYEPVLGNTTQDFVNHYATAMLPARPRKPQDKAKVEVGVQIVERWILARLRNHRFYSLAELNKAIGKLIADLNRRPFKKLDGNRHEWFERLDRPALRPLPARRYEIATFVKCRVNIDYHVEVDHHYYSVPHSLVRQEVYARVTRHGVQILHRGKRVAAHARSRIRNKHTTLPEHMPAAHRAHMEWTPGRLLNWGASVGPGAEAIVKHLLTNRPHPEMGYRACLGLLSLSRKYGKERLEAACQRALVIGSPTRRSVLSILESGLDRQPMLPIPPTEWHSPDHENVRGPEYYH
>NZ_CP009321.1|WP_006400880.1|37362_37500_+|hypothetical-protein
MRNTTAEPERLSRFGRVISCFGSLITHSGNVITRFGKMIARFGNR
>NZ_CP009321.1|WP_013700016.1|38700_40380_+|PRTRC-system-ParB-family-protein
MQEAILQQPTVKLGRIKLGRNPRTYFDDAKMAEMKASITARGVDTPVIVRPIDDGFYELIAGGRRFKAALETRGEDYDMPVNVKDVDEVEAEEIAFTENIQRDDMSPGDEAVEAARLLGRCQGDRDEAARRIGWSRPTLDSRLALLNCSKDVLIALNTRQILLGHAELLAALSKDNQDRVLPVIVAEKKSIAEVRKLVESAACSLSAAIFDKADCAACQHNSAMQSEMFGESIATGNCTNRQCYNGKTDKQLEAIAGSLRDEFPTVRIVRAGDNHTRVQLTVDGPNGVGEAQAKACHGCQNFGVAVSGLPDSAGKTFRGQCFDTVCNMRKVADRIKADKAATKAATADGKVSAVAAKTGGKNASAAGAAAPAAVTVVAESDRVKQYREALWRKALRRDVGKSGELARQYLIAIVLAGYARQIKDEAFRAVFEKVTDKKAPASDFGKALSLSASANPEQQATMITGMFVAAVEGLDVSYLRQLCKHHDLDLTQHWKLNKEFLELVTKAEMMVIADELGLRVAMGDNFKKVFSKSKADVITALLAVEGFVYDGKLLKVLKY
>NZ_CP009321.1|WP_013700017.1|40455_40908_+|PRTRC-system-protein-E
MFQALEPLLRSAEKLVLTLAIDGDVITVFLTPAGGKDSMLRQPLILRATAAELDDGFANAIAGFTVAHQSLGEQVAVTNAILEAQQHKQATKAQKVLSGASQPAAAMASMDGDADDDTGEAEAGTTSAARTEAPAAGEKSAGTDLSSLIL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009321_1	1.1\|26692\|24\|NZ_CP009321\|PILER-CR	26692-26715	24	NZ_CP022209	Burkholderia gladioli pv. gladioli strain FDAARGOS_188 plasmid unnamed1, complete sequence	97203-97226	0	1.0
NZ_CP009321_1	1.1\|26692\|24\|NZ_CP009321\|PILER-CR	26692-26715	24	NZ_CP009321	Burkholderia gladioli strain ATCC 10248 plasmid 1, complete sequence	26692-26715	0	1.0
NZ_CP009321_1	1.1\|26692\|24\|NZ_CP009321\|PILER-CR	26692-26715	24	NZ_CP022007	Burkholderia gladioli pv. gladioli strain KACC 11889 plasmid pls1, complete sequence	167139-167162	0	1.0
NZ_CP009321_1	1.2\|26734\|24\|NZ_CP009321\|PILER-CR	26734-26757	24	NZ_CP022209	Burkholderia gladioli pv. gladioli strain FDAARGOS_188 plasmid unnamed1, complete sequence	97161-97184	0	1.0
NZ_CP009321_1	1.2\|26734\|24\|NZ_CP009321\|PILER-CR	26734-26757	24	NC_015383	Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence	34277-34300	0	1.0
NZ_CP009321_1	1.2\|26734\|24\|NZ_CP009321\|PILER-CR	26734-26757	24	NZ_CP009321	Burkholderia gladioli strain ATCC 10248 plasmid 1, complete sequence	26734-26757	0	1.0
NZ_CP009321_1	1.1\|26692\|24\|NZ_CP009321\|PILER-CR	26692-26715	24	NC_015383	Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence	34235-34258	1	0.958
NZ_CP009321_1	1.2\|26734\|24\|NZ_CP009321\|PILER-CR	26734-26757	24	NZ_CP022007	Burkholderia gladioli pv. gladioli strain KACC 11889 plasmid pls1, complete sequence	167181-167204	2	0.917

1. spacer 1.1|26692|24|NZ_CP009321|PILER-CR matches to NZ_CP022209 (Burkholderia gladioli pv. gladioli strain FDAARGOS_188 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aatgcgccgcaactgaggtcggat	CRISPR spacer
aatgcgccgcaactgaggtcggat	Protospacer
************************

2. spacer 1.1|26692|24|NZ_CP009321|PILER-CR matches to NZ_CP009321 (Burkholderia gladioli strain ATCC 10248 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

aatgcgccgcaactgaggtcggat	CRISPR spacer
aatgcgccgcaactgaggtcggat	Protospacer
************************

3. spacer 1.1|26692|24|NZ_CP009321|PILER-CR matches to NZ_CP022007 (Burkholderia gladioli pv. gladioli strain KACC 11889 plasmid pls1, complete sequence) position: , mismatch: 0, identity: 1.0

aatgcgccgcaactgaggtcggat	CRISPR spacer
aatgcgccgcaactgaggtcggat	Protospacer
************************

4. spacer 1.2|26734|24|NZ_CP009321|PILER-CR matches to NZ_CP022209 (Burkholderia gladioli pv. gladioli strain FDAARGOS_188 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtggtgatccctaaatcccccgg	CRISPR spacer
ggtggtgatccctaaatcccccgg	Protospacer
************************

5. spacer 1.2|26734|24|NZ_CP009321|PILER-CR matches to NC_015383 (Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence) position: , mismatch: 0, identity: 1.0

ggtggtgatccctaaatcccccgg	CRISPR spacer
ggtggtgatccctaaatcccccgg	Protospacer
************************

6. spacer 1.2|26734|24|NZ_CP009321|PILER-CR matches to NZ_CP009321 (Burkholderia gladioli strain ATCC 10248 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtggtgatccctaaatcccccgg	CRISPR spacer
ggtggtgatccctaaatcccccgg	Protospacer
************************

7. spacer 1.1|26692|24|NZ_CP009321|PILER-CR matches to NC_015383 (Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence) position: , mismatch: 1, identity: 0.958

aatgcgccgcaactgaggtcggat	CRISPR spacer
aaggcgccgcaactgaggtcggat	Protospacer
** *********************

8. spacer 1.2|26734|24|NZ_CP009321|PILER-CR matches to NZ_CP022007 (Burkholderia gladioli pv. gladioli strain KACC 11889 plasmid pls1, complete sequence) position: , mismatch: 2, identity: 0.917

ggtggtgatccctaaatcccccgg	CRISPR spacer
ggtggtgatccctaaatccccgga	Protospacer
********************* *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

81225 : 178882

Leptospira_phage(26.32%)

integrase,transposase

attL 79131:79147|attR 184012:184026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
79131:79147	attL	NA	NA	NA	NA
WP_036047717.1\|81225_82155_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
79131:79147	attL	NA	NA	NA	NA
WP_036047714.1\|82373_82766_-	DUF2471 family protein	NA	NA	NA	NA
WP_036052807.1\|82856_83156_-	H-NS histone family protein	NA	NA	NA	NA
WP_036047712.1\|83248_83515_-	hypothetical protein	NA	NA	NA	NA
WP_036047709.1\|83539_86689_-	error-prone DNA polymerase	A0A1B1PA77	Streptomyces_phage	2.0e-89	28.2
WP_036047707.1\|86695_88174_-	DNA polymerase Y family protein	NA	NA	NA	NA
WP_036047704.1\|88091_88811_-	translesion DNA synthesis-associated protein ImuA	NA	NA	NA	NA
WP_036047700.1\|88996_89404_+	hypothetical protein	NA	NA	NA	NA
WP_036047697.1\|89468_90227_+	SOS response-associated peptidase family protein	C7BGE4	Burkholderia_phage	4.6e-32	35.0
WP_036047694.1\|90495_91488_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.8e-156	85.5
WP_036047694.1\|91709_92702_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.8e-156	85.5
WP_144417600.1\|93131_93452_+	hypothetical protein	NA	NA	NA	NA
WP_036047689.1\|93470_93788_+	H-NS histone family protein	NA	NA	NA	NA
WP_036047687.1\|94269_94461_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_042284319.1\|95490_96360_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_013700210.1\|96479_96809_+	H-NS histone family protein	NA	NA	NA	NA
WP_036047680.1\|96994_97417_-	hypothetical protein	A0A1P8DJD6	Virus_Rctr71	7.8e-21	40.9
WP_155296512.1\|97490_97658_-	hypothetical protein	NA	NA	NA	NA
WP_036047676.1\|97702_97978_-	hypothetical protein	NA	NA	NA	NA
WP_167547484.1\|97986_98163_-	hypothetical protein	NA	NA	NA	NA
WP_036052816.1\|99660_100137_+\|transposase	transposase	NA	NA	NA	NA
99031:99047	attR	NA	NA	NA	NA
WP_111946435.1\|100172_100463_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.7e-14	40.0
99031:99047	attR	NA	NA	NA	NA
WP_036047871.1\|100494_102060_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.5e-69	34.2
WP_144417601.1\|102254_102554_-	hypothetical protein	NA	NA	NA	NA
WP_144417602.1\|102745_103312_-	hypothetical protein	NA	NA	NA	NA
WP_080742007.1\|103346_103646_-	hypothetical protein	NA	NA	NA	NA
WP_036047658.1\|103883_104270_-	hypothetical protein	NA	NA	NA	NA
WP_036047655.1\|104297_104699_-	hypothetical protein	NA	NA	NA	NA
WP_111946429.1\|104986_105346_+	hypothetical protein	NA	NA	NA	NA
WP_144417603.1\|105330_105567_-	hypothetical protein	NA	NA	NA	NA
WP_036047947.1\|105577_105952_-	hypothetical protein	NA	NA	NA	NA
WP_155308249.1\|106434_106605_-	hypothetical protein	NA	NA	NA	NA
WP_080742004.1\|106686_107169_-	hypothetical protein	NA	NA	NA	NA
WP_052409117.1\|107681_107870_-	hypothetical protein	NA	NA	NA	NA
WP_080742003.1\|108141_108720_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_036047652.1\|108716_110309_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.7e-68	34.4
WP_027810102.1\|110340_110691_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.5e-17	39.4
WP_111946431.1\|110666_111155_-\|transposase	transposase	NA	NA	NA	NA
WP_052409116.1\|111436_111670_-	hypothetical protein	NA	NA	NA	NA
WP_080742002.1\|111898_112468_-	hypothetical protein	NA	NA	NA	NA
WP_042284310.1\|112468_116707_-	AHH domain-containing protein	A0A2H4JHK7	uncultured_Caudovirales_phage	2.5e-26	46.7
WP_042284307.1\|116728_117199_-	DUF1795 domain-containing protein	NA	NA	NA	NA
WP_042284304.1\|117251_117686_-	hypothetical protein	NA	NA	NA	NA
WP_036032541.1\|117685_118555_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_042284301.1\|118554_121545_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_045577426.1\|122055_122931_-	hypothetical protein	NA	NA	NA	NA
WP_036047927.1\|123754_124783_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_120513391.1\|124779_126477_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_042284296.1\|126985_127462_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_036052801.1\|127454_128489_+	AraC family transcriptional regulator ligand-binding domain-containing protein	NA	NA	NA	NA
WP_080742000.1\|128962_129286_+	Arc family DNA-binding protein	A0A0H5AWD9	Pseudomonas_phage	8.3e-07	55.8
WP_036052800.1\|129609_130497_+	hypothetical protein	NA	NA	NA	NA
WP_080741999.1\|130929_131988_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_036052799.1\|131987_133727_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	A0A0R6PI85	Moraxella_phage	1.7e-21	24.6
WP_155296510.1\|134111_143390_-	hemagglutinin repeat-containing protein	A0A0R6PJK4	Moraxella_phage	7.2e-26	28.7
WP_036053757.1\|143601_144153_-	hypothetical protein	NA	NA	NA	NA
WP_036052794.1\|144223_145201_-	ATP-binding protein	NA	NA	NA	NA
WP_036052791.1\|145227_147219_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_036052788.1\|147218_147848_-	hypothetical protein	NA	NA	NA	NA
WP_155296509.1\|148552_148840_+	hypothetical protein	NA	NA	NA	NA
WP_036052779.1\|150374_151181_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_080741998.1\|151190_152102_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_036052775.1\|153004_153985_+	VOC family protein	NA	NA	NA	NA
WP_036052773.1\|154040_155180_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_036052771.1\|155197_156124_+	3-keto-5-aminohexanoate cleavage protein	A0A1V0SL81	Klosneuvirus	4.8e-23	27.4
WP_036052768.1\|156195_157371_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_036052767.1\|157367_158144_+	cyclase family protein	NA	NA	NA	NA
WP_036052765.1\|158260_159169_+	transporter	NA	NA	NA	NA
WP_036052762.1\|159386_160634_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_036052759.1\|161841_163422_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.3e-44	26.8
WP_111946417.1\|163452_163785_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	9.1e-17	38.5
WP_036052755.1\|163781_164306_-\|transposase	transposase	NA	NA	NA	NA
WP_036052753.1\|164430_165051_-	hypothetical protein	NA	NA	NA	NA
WP_144417605.1\|165145_165430_-	hypothetical protein	NA	NA	NA	NA
WP_036047908.1\|165479_165740_-	hypothetical protein	NA	NA	NA	NA
WP_036047905.1\|165831_166365_-	hypothetical protein	NA	NA	NA	NA
WP_036052828.1\|166786_167680_+	hypothetical protein	NA	NA	NA	NA
WP_144417606.1\|168169_168538_+	hypothetical protein	NA	NA	NA	NA
WP_144417607.1\|168543_169152_-	hypothetical protein	NA	NA	NA	NA
WP_144417608.1\|169420_169717_-	hypothetical protein	NA	NA	NA	NA
WP_144417609.1\|169752_170511_-	HNH endonuclease	NA	NA	NA	NA
WP_036047899.1\|170779_171022_+	hypothetical protein	NA	NA	NA	NA
WP_036047897.1\|171077_171920_+	hypothetical protein	NA	NA	NA	NA
WP_144417610.1\|172259_172454_-	hypothetical protein	NA	NA	NA	NA
WP_036047895.1\|172450_173242_-	hypothetical protein	NA	NA	NA	NA
WP_088555623.1\|173690_174448_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_036047889.1\|174502_174724_+	hypothetical protein	NA	NA	NA	NA
WP_042284287.1\|174720_175710_+	DUF4238 domain-containing protein	A0A0F7LBR6	Escherichia_phage	6.6e-55	36.4
WP_088555625.1\|175736_178064_+\|integrase	tyrosine-type recombinase/integrase	A0A2D1G8E2	Mycobacterium_phage	7.1e-07	27.1
WP_036047888.1\|178222_178882_+\|integrase	site-specific integrase	K4K6A1	Caulobacter_phage	3.2e-05	25.6
184012:184026	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009319

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009322

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009323

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP009321

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection