CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009434	Burkholderia glumae LMG 2196 = ATCC 33617 chromosome II, complete sequence	0 crisprs	cas3,csa3,DinG	0	0	8	0
NZ_CP009435	Burkholderia glumae LMG 2196 = ATCC 33617 chromosome I, complete sequence	2 crisprs	cas3,DEDDh,csa3,DinG	1	8	11	0
NZ_CP009433	Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_1, complete sequence	1 crisprs	NA	0	1	1	1
NZ_CP009432	Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_2, complete sequence	0 crisprs	NA	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009435_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009435_1

1549441-1549938

Orphan

Consensus_repeat	Method
GCNGNGAAGAAGGNNGCNGCGAAGAAG	CRT

9 spacers

The CRISPR arrays of NZ_CP009435_1

>merge|NZ_CP009435|1|1549441-1549938|CRT
GCTGCCAAGAAGGCAGCAGCGAAGAAGGCGGCTCCGGTTGCCAAGAAGGCAGCGGCACCGGCGAAGAAGGCTGCCGTGAAGAAGGTCGCGGCCAAGAAGGTTGTCGCCAAGAAGGCGGCGGTGAAGAAGGTCGCGGCGAAGAAGGCGGCACCGGCCAAGAAGGCAGCGGTGAAGAAGGTCGCGGCAAAGAAGGTTGTCGCCAAGAAGGTCGCGGTGAAGAAGGTCGCGGCGAAGAAGGCGGCACCGGCCAAGAAGGCAGCGGTGAAGAAGGTCGCGGCGAAGAAGGTTGTCGCCAAGAAGGCGCCGGCTGCGAAGAAGGTTGCCGCGAAGAAGGTCGCCGTGAAGAAGGTGGCGGCGAAGAAGGCCGCGCCGGCGAAGAAGGCCGCCGTGAAGGCCGCCGCACCGGCGAAGAAGGCCGCTGCAAAGACGCCGGCACCGGCGAAGAAGGCACCGGCTGCGAAGAAGGCTGCACCGGCGAAGAAGGCGGCTGCCGCGAAG

>NZ_CP009435|1|1|1549441-1549938|CRT
GCTGCCAAGAAGGCAGCAGCGAAGAAG	GCGGCTCCGGTTGCCAAGAAGGCAGCGGCACCGGCGAAGAAGGCT
GCCGTGAAGAAGGTCGCGGCCAAGAAG	GTTGTCGCCAAGAAGGCG
GCGGTGAAGAAGGTCGCGGCGAAGAAG	GCGGCACCGGCCAAGAAGGCA
GCGGTGAAGAAGGTCGCGGCAAAGAAG	GTTGTCGCCAAGAAGGTC
GCGGTGAAGAAGGTCGCGGCGAAGAAG	GCGGCACCGGCCAAGAAGGCA
GCGGTGAAGAAGGTCGCGGCGAAGAAG	GTTGTCGCCAAGAAGGCGCCG
GCTGCGAAGAAGGTTGCCGCGAAGAAG	GTCGCCGTGAAGAAGGTG
GCGGCGAAGAAGGCCGCGCCGGCGAAG	AAGGCCGCCGTGAAGGCCGCCGCACCGGCGAAGAAGGCC
GCTGCAAAGACGCCGGCACCGGCGAAG	AAGGCACCGGCTGCGAAGAAGGCTGCA
CCGGCGAAGAAGGCGGCTGCCGCGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009435.1\|WP_012734578.1\|1540013_1540565_-\|hypoxanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181675
NZ_CP009435.1\|WP_012734588.1\|1550798_1551737_-\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP009435.1\|WP_012734587.1\|1550299_1550776_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|225675
NZ_CP009435.1\|WP_012734581.1\|1543069_1543357_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_012734579.1\|1540701_1542069_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP009435.1\|WP_012734589.1\|1551834_1552338_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP009435.1\|WP_012734575.1\|1536635_1537268_-\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NZ_CP009435.1\|WP_012734584.1\|1547761_1548985_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|235968
NZ_CP009435.1\|WP_035982262.1\|1544393_1547405_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|235966
NZ_CP009435.1\|WP_012734590.1\|1552432_1553827_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|378759
NZ_CP009435.1\|WP_012734582.1\|1543353_1543935_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NZ_CP009435.1\|WP_012734576.1\|1537487_1539224_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP009435.1\|WP_012734580.1\|1542156_1543056_+\|cytochrome-c-biogenesis-protein-CcsA	unknown	unknown	gnl\|CDD\|226621
NZ_CP009435.1\|WP_012734592.1\|1554777_1556145_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NZ_CP009435.1\|WP_012734591.1\|1553872_1554775_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP009435.1\|WP_012734595.1\|1557383_1557926_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP009435.1\|WP_012734577.1\|1539297_1539900_+\|MarC-family-protein	unknown	unknown	gnl\|CDD\|170674
NZ_CP009435.1\|WP_012734593.1\|1556200_1556668_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_CP009435.1\|WP_012734594.1\|1556737_1557190_-\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NZ_CP009435.1\|WP_012734596.1\|1557915_1558578_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009435.1\|WP_012734578.1\|1540013_1540565_-\|hypoxanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|181675	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional.	5.05265e-114
NZ_CP009435.1\|WP_012734588.1\|1550798_1551737_-\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	7.11133e-98
NZ_CP009435.1\|WP_012734587.1\|1550299_1550776_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|225675	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane].	1.12023e-34
NZ_CP009435.1\|WP_012734589.1\|1551834_1552338_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	7.57143e-99
NZ_CP009435.1\|WP_012734579.1\|1540701_1542069_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP009435.1\|WP_012734575.1\|1536635_1537268_-\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	2.42093e-96
NZ_CP009435.1\|WP_012734584.1\|1547761_1548985_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
NZ_CP009435.1\|WP_035982262.1\|1544393_1547405_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|235966	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP009435.1\|WP_012734590.1\|1552432_1553827_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|378759	pfam11906, DUF3426, Protein of unknown function (DUF3426). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.	2.7543e-40
NZ_CP009435.1\|WP_012734582.1\|1543353_1543935_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	1.10589e-124
NZ_CP009435.1\|WP_012734576.1\|1537487_1539224_+\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP009435.1\|WP_012734580.1\|1542156_1543056_+\|cytochrome-c-biogenesis-protein-CcsA	gnl\|CDD\|226621	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only].	5.96045e-62
NZ_CP009435.1\|WP_012734592.1\|1554777_1556145_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NZ_CP009435.1\|WP_012734591.1\|1553872_1554775_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.90351e-119
NZ_CP009435.1\|WP_012734595.1\|1557383_1557926_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	4.14391e-41
NZ_CP009435.1\|WP_012734577.1\|1539297_1539900_+\|MarC-family-protein	gnl\|CDD\|170674	PRK10739, PRK10739, YhgN family NAAT transporter.	1.40858e-49
NZ_CP009435.1\|WP_012734593.1\|1556200_1556668_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	9.17441e-87
NZ_CP009435.1\|WP_012734594.1\|1556737_1557190_-\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	6.0764e-96

>NZ_CP009435.1|WP_012734584.1|1547761_1548985_+|ribonucleotide-diphosphate-reductase-subunit-beta
MLNWDDEKTAVTPASGAQHNAMRAPAGMAVGVQAATPAAHQAPSARDIFEGDLAVAPHASAAAAVAGAQERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLTEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTPEFRAEIRELFKRAVELEYRYAEDTMPRGVLGLNAAMFKSYLRFIANRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE
>NZ_CP009435.1|WP_035982262.1|1544393_1547405_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MQTTDTGTSQFESAQSRPLGTASQGAPALAPQATFADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERAHSDAPADAPAGAAGINVTDAGVTRPLDMGALRGLIASACEGLGSAVNPDPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILGEEVSQGEMQARYAEYFPQFLKRGVEAELLDDKLLQFDLVRLGEALDAGRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYHVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYLGYEEKVARGELKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFSSDAAVEFADRSMEAVCYYAYWASTELSEERGRYSSYRGSLWDRGILPQDTLKLLEEARGGYVEVDMSSSLDWTSLRERISLHGMRNSNCIAIAPTATISNIIGVSPCIEPTFQNLFVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPSDLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIFMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHGALNAVPSGDGGAGGGAGGGAAGGAHGAAGGFGAAGGAGSGVLNAAPAAEAEIAVDGPVCMMRPGDPGFEECEACQ
>NZ_CP009435.1|WP_012734582.1|1543353_1543935_+|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MSEVLEVGADGWLPGARHAPSPNHEARPAGVVPTLVVVHNISLPPGEFGGEAIVALFQNRLDCDAHPYYDLNLRGLRVSAHFLIARDGELIQFVSCEARAWHAGISTFLGRERCNDFSIGIELEGTDDLPFEPAQYVTLAALVRALAARYPIEAVAGHADIAPGRKTDPGPHFDWQRLAADAGLPPRYFPYRR
>NZ_CP009435.1|WP_012734581.1|1543069_1543357_+|hypothetical-protein
MRNLLLLILLFIAGSWVSRKLRQAQERANRGGGGAPGQGGPRPSAARTPSLPEPMVRCALCGVHTPKGDAVEAGGDYFCSREHAARHAAAARDAQ
>NZ_CP009435.1|WP_012734580.1|1542156_1543056_+|cytochrome-c-biogenesis-protein-CcsA
MDIVLYALTALLYGGLAVAGWRAHRSGLVQPLAASVPPVPGEPGAPATAVGGADRALLFAALLAHGVLLHATIFPHDAMVFGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACLASLLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFVIAALHAVLMLMTERRLQALRQGGRIGSAGVLTSWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARALRFDHKTVFAILSWCMFGGILVARRLSGWRGRGAARWVLASFGALLLAYVGSRFVLEVLLHRPVV
>NZ_CP009435.1|WP_012734579.1|1540701_1542069_-|signal-recognition-particle-protein
MLDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALGEEVISSLSPGQALVGVVQKELTAVIGGDYEGKAVELNLAVTPPAIILMAGLQGAGKTTTVGKLAKLLREKQKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSTPEQKPVEIARAALDWARRHYHDVLIVDTAGRLGIDEAMMKEIAELHAAINPAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRSITGKPIKFVGVAEKLDGLEVFHPDRMANRILGMGDILALVEEAQRGVDVQAAQKLADKVKKGGDFDLNDFRAQISQMKNMGGLSSLMDKLPAQFQQAAAGADMGHAEKQIRRMEGIINSMTPAERAKPDLIKATRKRRIAAGAGVPVQEVNRMLNQYDQMRTMMKKLKGGNMQKMMRGLKGMMPGLR
>NZ_CP009435.1|WP_012734578.1|1540013_1540565_-|hypoxanthine-guanine-phosphoribosyltransferase
MNREEALHIFQHSEQIVSADEVSASIGRMAAAIRDEIGEAFPLVLSVMGGAAVFTGMLLPHLDFPLEFDYIHLTRYRNTTQGSPEMHWRVAPRESVKDRIVIVLDDILDEGETMAAIRDRILEMGAKRFLSAVLCEKTLTKPKPLRPDFCGFSVPDRYVFGCGMDAKGYWRNLPTIRALTAEA
>NZ_CP009435.1|WP_012734577.1|1539297_1539900_+|MarC-family-protein
MEYNFMSATVLLLLITDPLGNIPLFIAALRDVPGERRVRVILREVAIAFVILLVFMVVGDRFLRMMSLTDLSLRIGGGIVLFLIALRMIFPHPDGAFGSDPRAGGEPFIVPLAIPALAGPSALATVMLLTSQAPGKTVEWIGALTVTMLVCATVLVLAGRIQSWLGERTVMAFERLMGLVLVAISVEMILAGIRAFSHQL
>NZ_CP009435.1|WP_012734576.1|1537487_1539224_+|proline--tRNA-ligase
MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRIAGGIYNYLPIGLRSIRKVEAIVREEMNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARNQIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDQAGLKESYRKMYDAYVRVFTRIGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYCPTSDFAANVEAAEALPLLASRAAPAEAMAKVATPGKAKCEAVAELLNIPLERTIKSIVLATENEGAEPTIWLLMLRGDHDLNEIKAAKQPGLAGYRMASEAEIVEWFGTPPGYLGPVGTKKPVKVIADRTVANMSDFVVGANEVDYHIAGVNWGRDLPEPVVADLRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSKALGATFLDEGGKPQPMEMGCYGIGVTRILGAAIEQNFDDRGIIWPEAIAPFEVVLCPMGYDRSELVRETADQLYAALSAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDTEATLLPADGAAATVIETVRAALAR
>NZ_CP009435.1|WP_012734575.1|1536635_1537268_-|RNA-pyrophosphohydrolase
MLDREGFRPNVGIILLNARNEVFWGKRLREHSWQFPQGGIKYGETPMQAMFRELHEETGLLPEHVKIIGRTRDWLRYEVPDKFIKREVRGHYRGQKQIWFLLRMVGRDCDICLRATDHPEFDAWRWNEYWVPLDAVIEFKRDVYQLALTELSRFLRRPAQRPDNKARVARPTRYPRVIGVQPVDPSQICSEVEPGASPYDEAPGSFLLRD
>NZ_CP009435.1|WP_012734587.1|1550299_1550776_-|glycine-zipper-2TM-domain-containing-protein
MLTRKTLTLTAMLAASVSLTGCFTPPGSADVYSASQTQREQTVRFGTVESVRAVRIESDTGAGSTLGTLGGGALGAVAGSAIGGGRGSILTAIAGGIAGAVAGNAIGQGVSTANGVEITVRLDNGDLRSITQAATPEVFRAGDRVRLLSSGGVTRVTH
>NZ_CP009435.1|WP_012734588.1|1550798_1551737_-|carbohydrate-kinase-family-protein
MATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALHALGGDARVMGTLGAIDGQLYLDRFDSLGLARDYVRVVPDTHSAQAMITTDLDNNQITAFHPGAMMQSHLNHAGEARDIRLAIIGPDGFQGMVQHVEELAKAGVPFVFDPGQGLPLFDRETLRRSIELATYLAVNDYEAKLVSDKTGWSEDELASRVQALIITRGEHGATIRHRDGIEQIPVVKAEQIVDPTGCGDAFRGGLLYGIEKGLDWATTGRLASLMGSIKIAHSGPQSYLLGRTEILSRFQSAFGYSIE
>NZ_CP009435.1|WP_012734589.1|1551834_1552338_-|thiol-peroxidase
MSKVTLGGNPIDLAGEFPAVGSQAPDFKLVGQDLGELTLASFAGKRKVLNIVPSLDTPTCATSTRKFNEAAGKLADTVVVVVSADLPFAAKRFCTTEGLENVSTASTFRGGRDFAQAYGVDVTSGPLNGLTARAVVVIDANDKVIYTELVDEIKNEPNYDAALAALK
>NZ_CP009435.1|WP_012734590.1|1552432_1553827_-|zinc-ribbon-domain-containing-protein
MPLATRCPHCETVFRISPEHLKLHGGLARCGHCQQVFDAVNALVDPDSELAPPAAEPASTAGAAPPPPRVFPATAPHAATTPPMGASFEPGAWDMRAPWLDGGIDPTLRHHGGNTGPAPLLPVAAAAAREVPANEAGLARGEPVVPPASGSAPVATPAADPASERVPGPLPAPASEPVAESAAAPAREPAPAPADATPAAPADHGPGSGLAAPAHGASDADLAGLVAALPRAMAEPSFGAAPPAGGHDDGARAPRGGAESGAPGMPPRETEPFAVEPEQDDRIHFAMTRESPAGRRGSNGRQMLGGFLAGLLIVVLAGQLAWWLREPLLTNWPAAQPLFARACAALGCTVEPPRAIDGLRLGASDLRQLDGPRVLELKVPLSNHAALALAYPSIELTLLDASNHVAARRVLAPADYVPPGTRIEAGLAAGTTETMFVRIDTAPGAADGAPGIAASNFRVQIFYP
>NZ_CP009435.1|WP_012734591.1|1553872_1554775_-|50S-ribosomal-protein-L11-methyltransferase
MSYRELVAELAREHAEALSDALIELGALSVSVEDADADTPDEQPLFGEPGLTPERTAWQHSRVIALLADTHDPAVLLAAAANEAGLGAVPSFTLREVEEQDWVRVTQSQFDPIPIGQRIWVVPSWHDAPEPDALVLELDPGLAFGTGSHPTTRLCMEWLEQTVEAGQSVLDYGCGSGILAILAKKCGAGRVIGIDIDPQAVESARHNSERNRAEVDYGLPDDCPPGEFDIVVANILSNPLKLMASMLASKVRPGGRIALSGVLARQADEVAGVYARYIDMSVWREHEGWVCLAGTRRESH
>NZ_CP009435.1|WP_012734592.1|1554777_1556145_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MFEKILIANRGEIALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVTDAQAIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRLMGDKVTAKQTMIRTGVPCVPGSEGALPDDPKEIVKIARAIGYPVIIKASGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNPQVYMEKYLENPRHIEIQVLADAHKNALWLGERDCSMQRRHQKVIEEAPAPGIARRLIDRIGDRCADACKKMGYLGAGTFEFLYENNEFYFIEMNTRVQVEHPVTELITGIDIVQEQIKIAAGEKLAIRQRDIQFRGHAIECRINAEDPFKFTPSPGRITSWHTPGGPGVRVDSHAYNGYFVPPNYDSMIGKLIAYGATREQAIQRMRIALSEMVVEGIQTNIPLHRELMLDSKFVEGGTSIHYLEGRLAAKQQVAPEEA
>NZ_CP009435.1|WP_012734593.1|1556200_1556668_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDLRKLKTLIDLVSESGISELEVTEGEGKVRIVKNAPPVYMQPAAGYAPQVSAAAPAANPAGEGAAPAAAAPAAAAPQGHVVTSPMVGTFYRAPSPGADPFIQVGDTVKEGQTLCIIEAMKLLNEIESDKSGVVKEILVENGQAVEYGQPLFVVG
>NZ_CP009435.1|WP_012734594.1|1556737_1557190_-|type-II-3-dehydroquinate-dehydratase
MIRLLVLHGPNLNLLGTREPEVYGRVTLAEIDRALAARAGEAGAELATFQSNHEGALVDRIHAARDQGTDFIVLNPAAYTHTSVAIRDALAGVGIPFVEVHLSNVHRREPFRHHSYFSDQAEGVICGFGWKGYLHALDYALDKLRDAPRG
>NZ_CP009435.1|WP_012734595.1|1557383_1557926_-|TlpA-family-protein-disulfide-reductase
MNSKRLVSAAVAAVAIAGGLAAGHWVRGDAFENTAEAAPVGDPVSALWAAPVTDPDGKPQSLASFKGQKVVVNFWASWCGPCVKEMPELVALSHEYRQKGIRFVGVGVDSGQNVKAFLQKVKVDYPVVVSGYAGADLARNFGNTAGALPFTVVIDANGKVRMTKLGEIQPDALKKTLDTL
>NZ_CP009435.1|WP_012734596.1|1557915_1558578_-|hypothetical-protein
MPRKPLLDPRRVREEIALSAARLIAEDGLDYASAKRKAARQLLGDSRISGEWLPDNDMLEAELHEYLALFQSETQPAELRYLRQIALDWMERLAPFSPYLAGAVLNGTANAHSDIHLQTFSDSQKEIAIYLLNHNIQYDVSETRHFAGRGDVETLSFLWRTRQDTEAVGIHVALYDSEDLRGAVRADARGRLARANAAALRALLDAPATSSTSIRSEDEQ

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Crispr_ID: NZ_CP009435_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009435_2

2948108-2948438

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTACACGGCAG	PILER-CR
TTTCTAAGCTGCCTACACGGCAG	CRISPRCasFinder
TTTCTAAGCTGCCTACNCGGCAGNNAAC	CRT

5 spacers

The CRISPR arrays of NZ_CP009435_2

>merge|NZ_CP009435|2|2948108-2948438|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTACACGGCAGCGAACCTACCGGCGCGAACTGGAGCGCCTGCTGCTCTTTTCTAAGCTGCCTACACGGCAGCGAACCACGAGCGCACACGGCACCGGCCAGTGCGTGCATTTCTAAGCTGCCTACACGGCAGCGAACGCGCTTCAACAGGATTCTCTGACGTCGCCCTGATTTCTAAGCTGCCTACACGGCAGCGAACCTCGAACGGGGACGCGGCATGACTTACCGCGAGTTTCTAAGCTGCCTACCCGGCAGATAACCGCGTCATGCGAAACGGATACGTCGAGATCCCTTTCTAAGCTGCCTACCCGGCAGATAAC

>NZ_CP009435|2|1|2948108-2948433|PILER-CR
TTTCTAAGCTGCCTACACGGCAG	CGAACCTACCGGCGCGAACTGGAGCGCCTGCTGCTCT
TTTCTAAGCTGCCTACACGGCAG	CGAACCACGAGCGCACACGGCACCGGCCAGTGCGTGCA
TTTCTAAGCTGCCTACACGGCAG	CGAACGCGCTTCAACAGGATTCTCTGACGTCGCCCTGA
TTTCTAAGCTGCCTACACGGCAG	CGAACCTCGAACGGGGACGCGGCATGACTTACCGCGAG
TTTCTAAGCTGCCTACCCGGCAG	ATAACCGCGTCATGCGAAACGGATACGTCGAGATCCC
TTTCTAAGCTGCCTACCCGGCAG

>NZ_CP009435|2|1|2948108-2948433|CRISPRCasFinder
TTTCTAAGCTGCCTACACGGCAG	CGAACCTACCGGCGCGAACTGGAGCGCCTGCTGCTCT
TTTCTAAGCTGCCTACACGGCAG	CGAACCACGAGCGCACACGGCACCGGCCAGTGCGTGCA
TTTCTAAGCTGCCTACACGGCAG	CGAACGCGCTTCAACAGGATTCTCTGACGTCGCCCTGA
TTTCTAAGCTGCCTACACGGCAG	CGAACCTCGAACGGGGACGCGGCATGACTTACCGCGAG
TTTCTAAGCTGCCTACCCGGCAG	ATAACCGCGTCATGCGAAACGGATACGTCGAGATCCC
TTTCTAAGCTGCCTACCCGGCAG

>NZ_CP009435|2|2|2948108-2948438|CRT
TTTCTAAGCTGCCTACACGGCAGCGAAC	CTACCGGCGCGAACTGGAGCGCCTGCTGCTCT
TTTCTAAGCTGCCTACACGGCAGCGAAC	CACGAGCGCACACGGCACCGGCCAGTGCGTGCA
TTTCTAAGCTGCCTACACGGCAGCGAAC	GCGCTTCAACAGGATTCTCTGACGTCGCCCTGA
TTTCTAAGCTGCCTACACGGCAGCGAAC	CTCGAACGGGGACGCGGCATGACTTACCGCGAG
TTTCTAAGCTGCCTACCCGGCAGATAAC	CGCGTCATGCGAAACGGATACGTCGAGATCCC
TTTCTAAGCTGCCTACCCGGCAGATAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009435.1\|WP_015875838.1\|2946475_2946742_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|237102
NZ_CP009435.1\|WP_015875843.1\|2952836_2953388_-\|membrane-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_015875840.1\|2949810_2950239_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_045678913.1\|2940873_2942247_+\|DUF1446-domain-containing-protein	unknown	unknown	gnl\|CDD\|377804
NZ_CP009435.1\|WP_015875833.1\|2942233_2942548_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_015875841.1\|2950370_2951594_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP009435.1\|WP_015875846.1\|2954382_2956518_-\|phospholipase-C,-phosphocholine-specific	unknown	unknown	gnl\|CDD\|274561
NZ_CP009435.1\|WP_015875835.1\|2943681_2943951_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_167343620.1\|2947409_2947622_-\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP009435.1\|WP_015875845.1\|2953963_2954185_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_015875839.1\|2948683_2949184_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_015875831.1\|2939520_2940822_+\|citrate-transporter	unknown	unknown	gnl\|CDD\|225407
NZ_CP009435.1\|WP_015875837.1\|2946170_2946383_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP009435.1\|WP_015875844.1\|2953506_2953935_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341390
NZ_CP009435.1\|WP_153477615.1\|2946935_2947334_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_017433026.1\|2949226_2949790_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_015875836.1\|2943943_2944696_-\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|366523
NZ_CP009435.1\|WP_015875842.1\|2951907_2952453_-\|DUF3005-domain-containing-protein	unknown	unknown	gnl\|CDD\|378664
NZ_CP009435.1\|WP_015875847.1\|2956548_2956743_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009435.1\|WP_015875834.1\|2942634_2943579_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311

Protein	Function_ID	Function_description	E-value
NZ_CP009435.1\|WP_015875838.1\|2946475_2946742_-\|translation-initiation-factor-IF-1	gnl\|CDD\|237102	PRK12442, PRK12442, translation initiation factor IF-1; Reviewed.	1.37457e-49
NZ_CP009435.1\|WP_015875846.1\|2954382_2956518_-\|phospholipase-C,-phosphocholine-specific	gnl\|CDD\|274561	TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream. [Cellular processes, Pathogenesis].	0
NZ_CP009435.1\|WP_015875831.1\|2939520_2940822_+\|citrate-transporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	2.67071e-131
NZ_CP009435.1\|WP_015875837.1\|2946170_2946383_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.00514e-12
NZ_CP009435.1\|WP_045678913.1\|2940873_2942247_+\|DUF1446-domain-containing-protein	gnl\|CDD\|377804	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA. This family consists of several bacterial and plant proteins of around 400 residues in length. One member of this family has been characterized in Pseudomonas citronellolis as AtuA, a member of a gene cluster that is essential for the acyclic terpene utilisation (Atu) pathway.	0
NZ_CP009435.1\|WP_015875841.1\|2950370_2951594_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	1.2238e-56
NZ_CP009435.1\|WP_015875844.1\|2953506_2953935_+\|CBS-domain-containing-protein	gnl\|CDD\|341390	cd04622, CBS_pair_HRP1_like, CBS pair domain found in Hypoxic Response Protein 1 (HRP1) -like proteinds. Mycobacterium tuberculosis adapts to cellular stresses by upregulation of the dormancy survival regulon. Hypoxic response protein 1 (HRP1) is encoded by one of the most strongly upregulated genes in the dormancy survival regulon. HRP1 is a 'CBS-domain-only protein; however unlike other CBS containing proteins it does not appear to bind AMP. The biological function of the protein remains unclear, but is thought to contribute to the modulation of the host immune response. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	3.44021e-44
NZ_CP009435.1\|WP_015875836.1\|2943943_2944696_-\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|366523	pfam01223, Endonuclease_NS, DNA/RNA non-specific endonuclease.	3.78211e-46
NZ_CP009435.1\|WP_167343620.1\|2947409_2947622_-\|cold-shock-domain-containing-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.48125e-32
NZ_CP009435.1\|WP_015875842.1\|2951907_2952453_-\|DUF3005-domain-containing-protein	gnl\|CDD\|378664	pfam11448, DUF3005, Protein of unknown function (DUF3005). This is a bacterial family of uncharacterized proteins.	6.09007e-48
NZ_CP009435.1\|WP_015875834.1\|2942634_2943579_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.34361e-91

>NZ_CP009435.1|WP_167343620.1|2947409_2947622_-|cold-shock-domain-containing-protein
MSRVFELASKWFNDSKGFGFITPDNGGEDLFAHFSEVSGDGFKTLAENQKVSFETKRGPKGMQAANIKPL
>NZ_CP009435.1|WP_153477615.1|2946935_2947334_-|hypothetical-protein
MHSILAAPASDSPGATYLSSIIFLWLQRHFLAFRCGGFSPQAPRSDRFFAPRHGTRPHASTCSSNTKIKWHNEQNQRCNGYAVHPTSHRSPDGSFSSNLQIEGVAGRYEFYSLDYFSSEAQALQHSARWARD
>NZ_CP009435.1|WP_015875838.1|2946475_2946742_-|translation-initiation-factor-IF-1
MAKEELLELDGIVDEVLPDSRYRVTLDNGVVVGAYASGRMRKNRIRILAGDRVTLELSVYDLTKGRINFRHKDERSGGAAPRASFRRR
>NZ_CP009435.1|WP_015875837.1|2946170_2946383_-|30S-ribosomal-protein-S21
MATIILKPDEPVEVALRRFRRGIERTGLIPELRARAAYEKPTAERKRKKAAAVARLNKQIKRSLPPKKRY
>NZ_CP009435.1|WP_015875836.1|2943943_2944696_-|DNA/RNA-non-specific-endonuclease
MTMKWLAALGLLSIAASIHAAPCSQFSPAGLEPELTNPKMVRQARLLCYSDFAVLHSGITHTPLWSAEHLTAAHLADARDEVRTNRFFAETRLPAGEGATLADYRRSGFDRGHMSPAGDRWNDVAMAESFSLANMIPQNPQNNRRLWARVEEAVRAMAMRDGEAYVVTGPMFHGSELQTIGASRVIVPTEIFKLVYLPARRVAFAIVVKNADVKRYDIETVHQLEAASGLRFPGVPERLKDMKVGGLSGV
>NZ_CP009435.1|WP_015875835.1|2943681_2943951_-|hypothetical-protein
MSKTNFPAFADDSTVVNLAGDALTISNDPSRIRVSGELEIARDQAGLKRAQALLAVFASIVEALEAVPDLPAKLADEPPAPTGRIANPF
>NZ_CP009435.1|WP_015875834.1|2942634_2943579_-|GlxA-family-transcriptional-regulator
MHRIGYLLSDGFQIMALASQTVFEVANLVAGTPFYAVENYSIAGGPQRSSLGMRVETRAPAPRGGVDSWLVVGVIDPLAVPPPDDLVAFLRRSSGRARRVAGICTGGFVLAEAGLLDGRRATTHWAFARALRQAHPAVRMEDDRIYIVDGPVWTSAGMTAGLDLALAMVEQDLGADLARSVAHKLVMHQRRAGGQSQHSEMLELAPKSDRIQNALNYARQNLHRSLSVEELATAAHLSPRQFSRVFTLETGQSPARAVEGLRLEAARLMVERGTHPLEVIARETGFRDRRHLREAFVRGFGVPPQAVRREARGG
>NZ_CP009435.1|WP_015875833.1|2942233_2942548_+|hypothetical-protein
MQLRELAHSRTGDKGNTLNVSVICRDPRHYAHVREHLSAARVKAWLGAFVRGEVVRHELPALAAFNFVLGEALGGGVTRSLALDAHGKSVSSALLAIEVPAPPD
>NZ_CP009435.1|WP_045678913.1|2940873_2942247_+|DUF1446-domain-containing-protein
MTVPTLDRPIRLGAGAGYSGDRIEPAVELAEHGALDYLIFECLAERTIAIAQQARRADPALGYDPLLGARMRAVLPAAAAGGVRIISNMGAANPLAAARETARIAASLGLGRLRVAAVSGDDVLAPVLGGAFRFLESGDAVTDYRERIVAANAYLGAEPIVAALAAGADVVLTGRVADPALFAAPLIHAFGWPMDDWTRLGQATVVGHLLECAGQVTGGYFADPGWLDVPDLARLGFPIGEVSADGAATITKLARAGGCVSVDTCKQQLLYEIHDPACYLQPDVSADFSAVRVVPDGPDRVRVTGGAGRARPDTLKVSVAYTDGHVGEGQISYGGPGATARARLAGQIVRERLALTGVAVSELRIDLIGVNALYGNTLAGPRDEPAEVRLRVAGRTATAADAARIGNEVETLYTNGPAGGGGVTKAAREVLAVQSVLLPRELVRPVFTMVEADDATA
>NZ_CP009435.1|WP_015875831.1|2939520_2940822_+|citrate-transporter
MLPLLGLATIVVLLGTILTRRLSPLVALIVVPLAAALAGGFGLQVGGFVVGGLKNLAPVVGMFVFAILYFGTITDAGTLDPIIDRILRAVGTRPTRIVVGTTLLALLIHLDGSGAVCFLVTIPAMLPLYDRLKMDRRVLAAAVSMAAGINFLPWTGPMIRASASLHLPVSALFNPLIPVQAVGLAFVFGAAYWLGRREQARLGIAAHGAIPIPERVLTPDQQALRRPHLFGFNLALTVLVLGSMVVLGERVPPALTFMVGFCIALVVNYPDVEMQRRRIDAHARAALMMAGILLAAGVFTGIMQGSGMLEAMAGAAVGFVPPSMAGHIPVALGLLAMPLSLLFDPDSFYFGVLPVIAEVAGRLGVPAVQVGQAALLGQMTTGFPVSPLTPATFLVVGLCGIDLAEHQKFTFPLLFGASVVMTIAAVALGVFPL
>NZ_CP009435.1|WP_015875839.1|2948683_2949184_+|hypothetical-protein
MTDHATDTDPAQDDSPIHEDGLWHDSGWTARVIKNEDDDGWAVAMIKDGEAEPALVGPWTMGRDKKNPKPLDAAAFRTLVKTASEVLRRHEQQREAMLHKEVTVHVEARAVSVTLDIVPDDDEPYAVLKAFDETGEQLGQATVQAGFRLDKASATRWVTRDFERPD
>NZ_CP009435.1|WP_017433026.1|2949226_2949790_-|hypothetical-protein
MAAVLGGVVLACAAPAGHAAAKADPHALIEQLVQCRASFDDLVSFNDRVDAHAVGFPEAKPMPGTSGPVWTVKPAVSALGVSSDTVLLNSRSSVFVVVASPHAADDVLALGQREGLGVELKMGGYAVVRKDLDQRAARAFNIDGGHYAAGCVYDEPAFDAARAARYNATPQRRAEKKALEKALQQAQ
>NZ_CP009435.1|WP_015875840.1|2949810_2950239_-|hypothetical-protein
MIQQAVRLASAGVALAASAALLSPVAHAAGPAVKKVKLLELYSRYAHDGQSVTGLPEYGDGKRILFTAVVVEQSQGLVGNTLLVAADPSQPDEPLARLTGYDEKEARKMAALPAGAKFSAICALALTSGSDFLALHDCVVKP
>NZ_CP009435.1|WP_015875841.1|2950370_2951594_-|YeeE/YedE-family-protein
MSTLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLYHAAFGFTSAWRVFIADRRGAGLRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTSVVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAFVAGSVVATAHMPFWTSMPQWKPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLLAGAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAPASHDVTTVMDIGIVLGAMAAASLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNIGAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVERVKPSGC
>NZ_CP009435.1|WP_015875842.1|2951907_2952453_-|DUF3005-domain-containing-protein
MNQPVKSNPYPQQQHEKAGQSPVKTPAAGKDQPDAGTQAAGFASRQTPETIAGKTPTGLPPIERGDRGAQHGDPVRRAAERITSLDNANMAATDNAVDVDGKGLEARREASPRQDNVIHSNASLDEATRPPAEGLGGIDSQPPSEVLARPGWRVENRGTVTVEHTNGERAERVFSFERSSH
>NZ_CP009435.1|WP_015875843.1|2952836_2953388_-|membrane-protein
MTMIVTGNFQTFADAEASRRRLMDQRFRRDDVSIFFLNPHGQHGRFPIGGDVYADTAAKPGGRGAIAGTVRGVSIGLLLGLLVYAIGHTPWWVPVATTLLGAYLGAFSGALARMRGRAEEGTGALSGTEHGVVLAAHVTESNATTAEEILRSTGAMSVERVDGEWRDGRWQDFDPTRRPDDRA
>NZ_CP009435.1|WP_015875844.1|2953506_2953935_+|CBS-domain-containing-protein
MIRVADVMSRDVVSIAPNDSVRHAAQCMAHYDVGALPVCDRGRLVGIVTDRDLAVRVLADDVGPDTAIGEVATRRPVCCREHDDLDAVQQRMAEARIRRTPVVTASGQLVGMLSLGDIATRAQGASQDELANTLERVSQPGQ
>NZ_CP009435.1|WP_015875845.1|2953963_2954185_-|hypothetical-protein
MMPHRFVVLEKIAFSLVVMSAVACTAFITYQRCPEDVRNMLDAGKDLLATSAAGYSIACASVDPNACIGLPTY
>NZ_CP009435.1|WP_015875846.1|2954382_2956518_-|phospholipase-C,-phosphocholine-specific
MVTQSRRDFLKFSAGLAGATAATTLVPESIRRALAIEPATVTGTIQDVQHIVVFMQENRSFDHYLGHLSGVRGYNDRFPVTLPNGKPVWFQPRQEDPSKVIAPFRYDTTNPNWNAQCIGGLPHTWVTTHSAIDHGRAGQWAAQKTNMTMGYHQREDVPFHYALADAFTVCDQYFCSIPGNTHPNRMYLMTGMVDPLATGGGPLLDNVDYIDNQFEPNQLRNPLTWTTYPERLEAAGISWQVYQQGTNFDNFTGNYGTNMLAAFQNFVNAPAGSSLQQRGMSTRNIAQLKADVQAGALPQVSWLLPPAAYSEHPKYTPLYGAYYISTILDALTSNPDVWSKTVLFIMYDENDGLFDHVVPPQAPTYVSTPPVNVGASTVDISLERHTVVPPQEVGTFTADTLPYGLGPRVPMFVVSPWSKGGFVSSQVFDHTSVLQFIERRFGVTEPNISPWRRAVCGDLTSTLDFTKSDATFPSLPSTSNYVAQADLQCSRATAQTAPAASTATPSIAAQEPGTRLSRPTPYELHVNGQLTSAGYTITFASSGTQGAHFWVYTNDSTALPRSYTVEAGKQLSDTWALDAGSGYAIHVYGPNGYFRRFLGAASGEAAAHPDLTTCYDVANGNVYVTLANGGTQPITVTATDLAYGQAPRSLTVPAGQSLEAHWDLSCSSQWYDLQFTIPDNPSWLRRIAGRVENGRVTTTDPAATAPVTKAI
>NZ_CP009435.1|WP_015875847.1|2956548_2956743_-|hypothetical-protein
MQTPALRHLILIGMLAAAASLAACNGDDSQPVAQPATPPKAACGNVAAATVTLHCPPGFTAPKS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009435_1	1.2\|1549540\|18\|NZ_CP009435\|CRT	1549540-1549557	18	NZ_CP009434.1	2776753-2776770	2	0.889

1. spacer 1.2|1549540|18|NZ_CP009435|CRT matches to position: 2776753-2776770, mismatch: 2, identity: 0.889

gttgtcgccaagaaggcg	CRISPR spacer
gttgtcgccgagcaggcg	Protospacer
*********.** *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009435_1	1.3\|1549585\|21\|NZ_CP009435\|CRT	1549585-1549605	21	KX815338	Streptomyces phage Joe, complete genome	23722-23742	1	0.952
NZ_CP009435_1	1.5\|1549678\|21\|NZ_CP009435\|CRT	1549678-1549698	21	KX815338	Streptomyces phage Joe, complete genome	23722-23742	1	0.952
NZ_CP009435_1	1.3\|1549585\|21\|NZ_CP009435\|CRT	1549585-1549605	21	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2695874-2695894	2	0.905
NZ_CP009435_1	1.3\|1549585\|21\|NZ_CP009435\|CRT	1549585-1549605	21	MT711979	Streptomyces phage Endor2, complete genome	24001-24021	2	0.905
NZ_CP009435_1	1.5\|1549678\|21\|NZ_CP009435\|CRT	1549678-1549698	21	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2695874-2695894	2	0.905
NZ_CP009435_1	1.5\|1549678\|21\|NZ_CP009435\|CRT	1549678-1549698	21	MT711979	Streptomyces phage Endor2, complete genome	24001-24021	2	0.905
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP007214	Burkholderia plantarii strain ATCC 43733 plasmid bpln_1p, complete sequence	116403-116434	2	0.938
NZ_CP009435_2	2.7\|2948196\|33\|NZ_CP009435\|CRT	2948196-2948228	33	NZ_CP013415	Burkholderia ubonensis strain MSMB2035 plasmid pMSMB2035, complete sequence	242614-242646	3	0.909
NZ_CP009435_2	2.7\|2948196\|33\|NZ_CP009435\|CRT	2948196-2948228	33	NZ_CP013369	Burkholderia ubonensis strain RF23-BP41 plasmid pRF23, complete sequence	216809-216841	3	0.909
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	CP003954	Rhodococcus opacus PD630 plasmid 5, complete sequence	15484-15510	4	0.852
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	CP003954	Rhodococcus opacus PD630 plasmid 5, complete sequence	15844-15870	5	0.815
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	CP003954	Rhodococcus opacus PD630 plasmid 5, complete sequence	15937-15963	5	0.815
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	7887-7913	5	0.815
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	JX100810	Caulobacter phage CcrColossus, complete genome	245907-245933	5	0.815
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	MN585966	Gordonia phage Faith5x5, complete genome	5841-5867	5	0.815
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	NC_049851	Burkholderia phage BcepSauron, complete genome	91813-91839	6	0.778
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	NC_010811	Ralstonia phage RSL1, complete genome	231059-231085	6	0.778
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	AB366653	Ralstonia phage RSL1 DNA, complete genome	231059-231085	6	0.778
NZ_CP009435_1	1.9\|1549885\|27\|NZ_CP009435\|CRT	1549885-1549911	27	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	148393-148419	7	0.741
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	194572-194603	7	0.781
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1618545-1618576	7	0.781
NZ_CP009435_2	2.7\|2948196\|33\|NZ_CP009435\|CRT	2948196-2948228	33	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	248617-248649	7	0.788
NZ_CP009435_2	2.10\|2948379\|32\|NZ_CP009435\|CRT	2948379-2948410	32	GQ919031	Streptomyces phage ZL12, complete genome	62929-62960	7	0.781
NZ_CP009435_1	1.1\|1549468\|45\|NZ_CP009435\|CRT	1549468-1549512	45	MK875791	Gordonia phage Yakult, complete genome	26737-26781	8	0.822
NZ_CP009435_2	2.2\|2948191\|38\|NZ_CP009435\|PILER-CR,CRISPRCasFinder	2948191-2948228	38	NZ_CP013415	Burkholderia ubonensis strain MSMB2035 plasmid pMSMB2035, complete sequence	242609-242646	8	0.789
NZ_CP009435_2	2.2\|2948191\|38\|NZ_CP009435\|PILER-CR,CRISPRCasFinder	2948191-2948228	38	NZ_CP013369	Burkholderia ubonensis strain RF23-BP41 plasmid pRF23, complete sequence	216809-216846	8	0.789
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	138393-138424	8	0.75
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	433456-433487	8	0.75
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	10021-10052	8	0.75
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1300782-1300813	8	0.75
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1879937-1879968	8	0.75
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	684374-684405	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	676977-677008	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	579738-579769	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	638562-638593	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	578853-578884	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	577639-577670	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	577629-577660	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	579726-579757	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	579745-579776	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	579723-579754	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	684432-684463	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	684432-684463	10	0.688
NZ_CP009435_2	2.6\|2948136\|32\|NZ_CP009435\|CRT	2948136-2948167	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	684421-684452	10	0.688

1. spacer 1.3|1549585|21|NZ_CP009435|CRT matches to KX815338 (Streptomyces phage Joe, complete genome) position: , mismatch: 1, identity: 0.952

gcggcaccggccaagaaggca	CRISPR spacer
ccggcaccggccaagaaggca	Protospacer
 ********************

2. spacer 1.5|1549678|21|NZ_CP009435|CRT matches to KX815338 (Streptomyces phage Joe, complete genome) position: , mismatch: 1, identity: 0.952

gcggcaccggccaagaaggca	CRISPR spacer
ccggcaccggccaagaaggca	Protospacer
 ********************

3. spacer 1.3|1549585|21|NZ_CP009435|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 2, identity: 0.905

gcggcaccggccaagaaggca	CRISPR spacer
aaggcaccggccaagaaggca	Protospacer
. *******************

4. spacer 1.3|1549585|21|NZ_CP009435|CRT matches to MT711979 (Streptomyces phage Endor2, complete genome) position: , mismatch: 2, identity: 0.905

gcggcaccggccaagaaggca	CRISPR spacer
acggcaccggccaagaaggcg	Protospacer
.*******************.

5. spacer 1.5|1549678|21|NZ_CP009435|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 2, identity: 0.905

gcggcaccggccaagaaggca	CRISPR spacer
aaggcaccggccaagaaggca	Protospacer
. *******************

6. spacer 1.5|1549678|21|NZ_CP009435|CRT matches to MT711979 (Streptomyces phage Endor2, complete genome) position: , mismatch: 2, identity: 0.905

gcggcaccggccaagaaggca	CRISPR spacer
acggcaccggccaagaaggcg	Protospacer
.*******************.

7. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP007214 (Burkholderia plantarii strain ATCC 43733 plasmid bpln_1p, complete sequence) position: , mismatch: 2, identity: 0.938

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
ctaccggcgcgaacttgaacgcctgctgctct	Protospacer
*************** **.*************

8. spacer 2.7|2948196|33|NZ_CP009435|CRT matches to NZ_CP013415 (Burkholderia ubonensis strain MSMB2035 plasmid pMSMB2035, complete sequence) position: , mismatch: 3, identity: 0.909

cacgagcgcacacggcaccggccagtgcgtgca	CRISPR spacer
aacgagcgcacacggcaccggacattgcgtgca	Protospacer
 ******************** ** ********

9. spacer 2.7|2948196|33|NZ_CP009435|CRT matches to NZ_CP013369 (Burkholderia ubonensis strain RF23-BP41 plasmid pRF23, complete sequence) position: , mismatch: 3, identity: 0.909

cacgagcgcacacggcaccggccagtgcgtgca	CRISPR spacer
aacgagcgcacacggcaccggacattgcgtgca	Protospacer
 ******************** ** ********

10. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to CP003954 (Rhodococcus opacus PD630 plasmid 5, complete sequence) position: , mismatch: 4, identity: 0.852

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
aaggcaccggcggcgaagaaggtggct	Protospacer
*********** **********. **

11. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to CP003954 (Rhodococcus opacus PD630 plasmid 5, complete sequence) position: , mismatch: 5, identity: 0.815

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
aaggcaccggcggcgaagaagacggtc	Protospacer
*********** *********.* *.

12. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to CP003954 (Rhodococcus opacus PD630 plasmid 5, complete sequence) position: , mismatch: 5, identity: 0.815

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
aaggcaccggcggcgaagaagacggtc	Protospacer
*********** *********.* *.

13. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
gtggggccggctgcgaagaaggctgcg	Protospacer
. ** .********************.

14. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to JX100810 (Caulobacter phage CcrColossus, complete genome) position: , mismatch: 5, identity: 0.815

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
atcgcaccggcttcgaagaaggatgcg	Protospacer
*  ********* ********* ***.

15. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to MN585966 (Gordonia phage Faith5x5, complete genome) position: , mismatch: 5, identity: 0.815

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
aaggaaccggccgcgaagaaggcgacg	Protospacer
**** ******.*********** .*.

16. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to NC_049851 (Burkholderia phage BcepSauron, complete genome) position: , mismatch: 6, identity: 0.778

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
gctgcaccggcagcgaagaaggccgct	Protospacer
.  ******** ***********.**

17. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to NC_010811 (Ralstonia phage RSL1, complete genome) position: , mismatch: 6, identity: 0.778

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
gctgctccggctgccaagaaggctgcg	Protospacer
.  ** ******** ***********.

18. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to AB366653 (Ralstonia phage RSL1 DNA, complete genome) position: , mismatch: 6, identity: 0.778

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
gctgctccggctgccaagaaggctgcg	Protospacer
.  ** ******** ***********.

19. spacer 1.9|1549885|27|NZ_CP009435|CRT matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.741

aaggcaccggctgcgaagaaggctgca	CRISPR spacer
ggctgaccggctgcaaagaaggctgcg	Protospacer
..   *********.***********.

20. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.781

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
cgaccggctcgaactggagggcctgctcgggt	Protospacer
* ****** ********** *******    *

21. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.781

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
cgaccggctcgaactggagggcctgctcgggt	Protospacer
* ****** ********** *******    *

22. spacer 2.7|2948196|33|NZ_CP009435|CRT matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 7, identity: 0.788

cacgagcgcacacggcaccggccagtgcgtgca	CRISPR spacer
caccagcgcacagggcaccggccacgccgcgga	Protospacer
*** ******** ***********   **.* *

23. spacer 2.10|2948379|32|NZ_CP009435|CRT matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 7, identity: 0.781

cgcgtcatgcgaaacggatacgtcgagatccc	CRISPR spacer
aactccatgcgaaacggatacgccgcgatctc	Protospacer
 .* .*****************.** ****.*

24. spacer 1.1|1549468|45|NZ_CP009435|CRT matches to MK875791 (Gordonia phage Yakult, complete genome) position: , mismatch: 8, identity: 0.822

--gcggctccggttgccaagaaggcagcggcaccggcgaagaaggct	CRISPR spacer
aagcgaccc--gccgccaagaaggcagcggcgccggcgaagaaggcc	Protospacer
  ***.*.*  *..*****************.**************.

25. spacer 2.2|2948191|38|NZ_CP009435|PILER-CR,CRISPRCasFinder matches to NZ_CP013415 (Burkholderia ubonensis strain MSMB2035 plasmid pMSMB2035, complete sequence) position: , mismatch: 8, identity: 0.789

cgaaccacgagcgcacacggcaccggccagtgcgtgca	CRISPR spacer
gctgtaacgagcgcacacggcaccggacattgcgtgca	Protospacer
   .. ******************** ** ********

26. spacer 2.2|2948191|38|NZ_CP009435|PILER-CR,CRISPRCasFinder matches to NZ_CP013369 (Burkholderia ubonensis strain RF23-BP41 plasmid pRF23, complete sequence) position: , mismatch: 8, identity: 0.789

cgaaccacgagcgcacacggcaccggccagtgcgtgca	CRISPR spacer
gctgtaacgagcgcacacggcaccggacattgcgtgca	Protospacer
   .. ******************** ** ********

27. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gacccggcgcgatctggagcgcctgctcggcc	Protospacer
   ********* **************   *.

28. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 8, identity: 0.75

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
cctgcgccgcgaactggatcgcctgctgcgac	Protospacer
*.  ** *********** **********  .

29. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 8, identity: 0.75

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
acaatggcgcgaactggggcgcctgctggggt	Protospacer
 .* .************.**********   *

30. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
cttgcggcgcgaactgctgcgcctgcttgacc	Protospacer
**  ************  *********   *.

31. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
cttgcggcgcgaactgctgcgcctgcttgacc	Protospacer
**  ************  *********   *.

32. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

33. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

34. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

35. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

36. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

37. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

38. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

39. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

40. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

41. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

42. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

43. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

44. spacer 2.6|2948136|32|NZ_CP009435|CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctaccggcgcgaactggagcgcctgctgctct	CRISPR spacer
gcgccgccgcgagctggagcgcctgcccgacc	Protospacer
 ..*** *****.*************.   *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

102535 : 216031

107

uncultured_Caudovirales_phage(20.0%)

portal,transposase,terminase,head,protease,integrase,tail,tRNA,plate

attL 152408:152429|attR 204287:204308

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015876599.1\|102535_103450_+\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_015876600.1\|103624_105067_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.4e-53	34.3
WP_015876601.1\|105285_105672_-	MliC family protein	NA	NA	NA	NA
WP_015876602.1\|105765_105927_-	hypothetical protein	NA	NA	NA	NA
WP_015876603.1\|106023_107238_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_015876604.1\|107437_108013_+	META domain-containing protein	NA	NA	NA	NA
WP_015876605.1\|108156_112773_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	1.1e-83	47.9
WP_015876606.1\|112991_114197_-	lactonase family protein	NA	NA	NA	NA
WP_015876607.1\|114420_116250_+	glycoside hydrolase family 15 protein	NA	NA	NA	NA
WP_015876608.1\|116509_118027_+	polyhydroxyalkanoate depolymerase	NA	NA	NA	NA
WP_015876609.1\|118182_118815_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_015876610.1\|119057_119897_+	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_015876611.1\|119893_120538_+	endonuclease III	NA	NA	NA	NA
WP_015876612.1\|120866_121301_+	DUF1841 family protein	NA	NA	NA	NA
WP_015876613.1\|121430_121799_-	cytochrome c	NA	NA	NA	NA
WP_015876614.1\|121836_122196_-	cytochrome c	NA	NA	NA	NA
WP_015876615.1\|122466_123309_+	MoxR family ATPase	NA	NA	NA	NA
WP_015876616.1\|123451_124627_+	VWA domain-containing protein	NA	NA	NA	NA
WP_085962346.1\|124714_125531_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015876618.1\|125702_126914_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_015876619.1\|127133_128087_+	transaldolase	A0A0E3F5V4	Synechococcus_phage	6.7e-12	30.4
WP_015876620.1\|128332_128770_+	VOC family protein	NA	NA	NA	NA
WP_015876621.1\|128915_129845_-	spermidine synthase	NA	NA	NA	NA
WP_015876622.1\|129934_130426_-	DNA-deoxyinosine glycosylase	NA	NA	NA	NA
WP_015876623.1\|130422_131061_-	chorismate lyase	NA	NA	NA	NA
WP_015876624.1\|131057_132956_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.1e-118	38.3
WP_015876625.1\|133157_134651_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_015876626.1\|134987_135707_+	VOC family protein	NA	NA	NA	NA
WP_015876627.1\|135776_136688_+	DMT family transporter	NA	NA	NA	NA
WP_035980910.1\|136752_137934_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_015876629.1\|137998_138457_+	RidA family protein	NA	NA	NA	NA
WP_045678833.1\|138453_139338_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_015876631.1\|142534_143737_+	chromate transporter	NA	NA	NA	NA
WP_015876632.1\|143822_144281_-	CopD family protein	NA	NA	NA	NA
WP_015876633.1\|144542_146867_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	3.7e-80	36.0
WP_015876634.1\|146940_148923_-	type IIA DNA topoisomerase subunit B	G3M9Z3	Bacillus_virus	5.7e-90	34.5
WP_015876635.1\|149124_151092_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	5.4e-48	28.3
WP_015876636.1\|151297_151708_-	DUF4399 domain-containing protein	NA	NA	NA	NA
152408:152429	attL	NA	NA	NA	NA
WP_015876637.1\|153255_154179_+	hypothetical protein	NA	NA	NA	NA
WP_045678834.1\|154171_154645_+	hypothetical protein	NA	NA	NA	NA
WP_042967743.1\|154641_156699_+	AAA family ATPase	NA	NA	NA	NA
WP_127913929.1\|156744_157089_-	DCL family protein	NA	NA	NA	NA
WP_015876638.1\|158443_158848_+	PAAR domain-containing protein	Q8W6S2	Burkholderia_virus	5.2e-14	45.2
WP_042967740.1\|158852_159356_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	8.7e-19	43.8
WP_042967741.1\|159703_160306_+	hypothetical protein	NA	NA	NA	NA
WP_015876642.1\|160308_161016_+	immunity 52 family protein	A4PE26	Ralstonia_virus	3.2e-35	42.1
WP_017432865.1\|161466_161730_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.3e-30	71.6
WP_133164454.1\|161825_162296_+\|transposase	transposase	NA	NA	NA	NA
WP_012732735.1\|162377_162833_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012732734.1\|162832_163186_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.1e-19	40.4
WP_012732733.1\|163285_164872_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.5e-56	33.8
WP_127913928.1\|164907_165273_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.2e-16	39.4
WP_012732752.1\|165304_166861_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.1e-67	34.0
WP_015877383.1\|167123_168170_+\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	8.4e-149	74.2
WP_017432367.1\|168792_169422_-	hypothetical protein	NA	NA	NA	NA
WP_015876646.1\|169418_169985_-	N-acetylmuramidase	A0A0E3JI96	Rhodoferax_phage	3.1e-49	53.7
WP_017432368.1\|169981_170431_-	hypothetical protein	NA	NA	NA	NA
WP_015876647.1\|170503_171553_-	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.5e-84	48.1
WP_015876648.1\|171562_171769_-\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.4e-12	55.2
WP_015876649.1\|171743_172622_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	7.5e-34	39.1
WP_017432369.1\|172631_175061_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	2.3e-56	33.5
WP_015876651.1\|175142_175445_-\|tail	phage tail assembly protein	A0A1B2LRV6	Wolbachia_phage	1.3e-06	39.0
WP_015876652.1\|175526_176030_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.2e-41	50.6
WP_015876653.1\|176039_177209_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.2e-159	72.9
WP_015876654.1\|177280_178003_-\|tail	tail assembly chaperone	E5E3Q6	Burkholderia_phage	5.0e-60	59.1
WP_015876655.1\|178016_180029_-\|tail	tail fiber protein	Q45YG3	Burkholderia_virus	5.0e-126	57.0
WP_015876656.1\|180016_180595_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.4e-33	48.0
WP_015876657.1\|180584_181481_-\|plate	baseplate J/gp47 family protein	A0A1J0I2M3	Salmonella_phage	1.3e-46	39.1
WP_015876658.1\|181477_181810_-	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	9.4e-22	50.0
WP_015876659.1\|181806_182004_-	hypothetical protein	NA	NA	NA	NA
WP_015876660.1\|182071_182809_-	hypothetical protein	NA	NA	NA	NA
WP_015876661.1\|182914_183595_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	9.3e-16	28.5
WP_015876662.1\|183591_184122_-	hypothetical protein	A0A1B2LRU9	Wolbachia_phage	3.8e-25	43.5
WP_015876663.1\|184111_184642_-\|tail	phage tail protein	K7R9K2	Vibrio_phage	6.3e-20	34.9
WP_015876664.1\|184645_184936_-	hypothetical protein	NA	NA	NA	NA
WP_015876665.1\|186009_186354_-\|head	head decoration protein	NA	NA	NA	NA
WP_015876666.1\|186383_187484_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.8e-48	36.0
WP_015876667.1\|187480_188971_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	1.8e-136	51.8
WP_013698685.1\|188967_189174_-	hypothetical protein	A0A219Y8X9	Aeromonas_phage	3.8e-05	52.1
WP_080569335.1\|189184_191203_-\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	3.9e-179	52.5
WP_015876669.1\|191165_191735_-	hypothetical protein	NA	NA	NA	NA
WP_015876670.1\|192289_193063_-	zinc finger-like domain-containing protein	NA	NA	NA	NA
WP_015876671.1\|193281_195783_-	virulence protein E	A0A2D1GN57	Marinobacter_phage	3.2e-98	40.7
WP_013698691.1\|195941_196325_-	hypothetical protein	NA	NA	NA	NA
WP_174484820.1\|196311_196854_-	hypothetical protein	C7BGG0	Burkholderia_phage	2.9e-28	45.6
WP_015876673.1\|197279_197783_+	helix-turn-helix transcriptional regulator	A0A193GYL7	Enterobacter_phage	3.4e-07	37.0
WP_050811421.1\|197736_198252_+	hypothetical protein	NA	NA	NA	NA
WP_080569337.1\|198356_198575_+	hypothetical protein	NA	NA	NA	NA
WP_042967260.1\|198624_198987_+	hypothetical protein	NA	NA	NA	NA
WP_015876675.1\|198986_200363_+	hypothetical protein	NA	NA	NA	NA
WP_042967258.1\|200464_200824_+	hypothetical protein	NA	NA	NA	NA
WP_017432301.1\|200816_201308_+	hypothetical protein	NA	NA	NA	NA
WP_017432302.1\|201304_201535_+	hypothetical protein	NA	NA	NA	NA
WP_017432303.1\|201707_201884_-	hypothetical protein	NA	NA	NA	NA
WP_015876678.1\|202108_202969_+	conjugal transfer protein TraN	NA	NA	NA	NA
WP_015876679.1\|202978_204079_-\|integrase	site-specific integrase	A0A2D1GMX8	Marinobacter_phage	1.8e-45	31.7
WP_015876680.1\|205505_206345_+	hypothetical protein	NA	NA	NA	NA
204287:204308	attR	NA	NA	NA	NA
WP_015876681.1\|206348_206642_+	hypothetical protein	NA	NA	NA	NA
WP_158335149.1\|206751_206949_+	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_017433129.1\|208621_210232_+	hypothetical protein	NA	NA	NA	NA
WP_015876683.1\|210659_212318_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_035979006.1\|212415_212766_-	hypothetical protein	NA	NA	NA	NA
WP_017433131.1\|213076_213457_-	DUF3592 domain-containing protein	NA	NA	NA	NA
WP_015876684.1\|213568_213838_+	hypothetical protein	NA	NA	NA	NA
WP_015876685.1\|213959_214169_+	hypothetical protein	NA	NA	NA	NA
WP_045678837.1\|214263_215454_+	serine hydrolase	NA	NA	NA	NA
WP_015876687.1\|215491_216031_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA

DBSCAN-SWA_2

345043 : 355979

Klosneuvirus(14.29%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015876796.1\|345043_347881_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	2.0e-80	26.3
WP_015876797.1\|347883_348384_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_015876798.1\|348467_349679_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	6.3e-39	31.1
WP_015876799.1\|349762_350209_+	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	6.7e-47	63.7
WP_015876800.1\|350485_352783_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-169	42.2
WP_015876801.1\|352779_353094_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	7.6e-13	43.4
WP_004196460.1\|353623_353827_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_015876802.1\|353938_355534_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_015876803.1\|355613_355979_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.2e-06	29.8

DBSCAN-SWA_3

1127176 : 1169223

Burkholderia_phage(91.11%)

portal,transposase,terminase,capsid,head,integrase,tail,holin,plate

attL 1127078:1127124|attR 1168005:1168051

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1127078:1127124	attL	NA	NA	NA	NA
WP_017432090.1\|1127176_1128253_-\|integrase	site-specific integrase	A0A1S5NNJ1	Burkholderia_phage	6.5e-181	91.3
WP_017432091.1\|1129143_1131936_-	toprim domain-containing protein	A0A1S5NPU9	Burkholderia_phage	0.0e+00	96.9
WP_017432092.1\|1131938_1132187_-	hypothetical protein	E5E3T3	Burkholderia_phage	2.7e-34	95.1
WP_045678860.1\|1132183_1132546_-	hypothetical protein	A0A1S5NQ52	Burkholderia_phage	7.3e-44	90.8
WP_017432093.1\|1132549_1132744_-	hypothetical protein	A0A1S5NTI1	Burkholderia_phage	6.5e-23	93.8
WP_017432094.1\|1132787_1132982_-	hypothetical protein	E5E3T6	Burkholderia_phage	9.3e-30	95.3
WP_012734468.1\|1132986_1133181_-	hypothetical protein	A0A1S5NR87	Burkholderia_phage	5.7e-27	96.9
WP_017432095.1\|1133269_1133518_-	ogr/Delta-like zinc finger family protein	A0A1S5NNI9	Burkholderia_phage	3.4e-40	96.3
WP_012734469.1\|1133545_1133737_-	hypothetical protein	E5E3T9	Burkholderia_phage	1.4e-09	54.7
WP_017432096.1\|1133765_1133957_-	hypothetical protein	E5E3U0	Burkholderia_phage	1.7e-12	67.3
WP_035978289.1\|1133973_1134159_-	hypothetical protein	NA	NA	NA	NA
WP_174484821.1\|1134318_1134768_+	helix-turn-helix transcriptional regulator	E5E3U2	Burkholderia_phage	6.3e-21	41.9
WP_042967159.1\|1134758_1135139_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_017432101.1\|1135604_1136759_-	phage late control D family protein	A0A1S5NV58	Burkholderia_phage	1.5e-191	96.6
WP_017432102.1\|1136755_1137184_-\|tail	phage tail protein	A0A1S5NTH4	Burkholderia_phage	2.9e-71	95.8
WP_045678862.1\|1137197_1140449_-	hypothetical protein	A0A1S5NRM8	Burkholderia_phage	0.0e+00	89.3
WP_017432103.1\|1140445_1140565_-\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	3.1e-12	86.8
WP_017432104.1\|1140564_1140876_-\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	1.9e-40	85.4
WP_017432105.1\|1140909_1141419_-\|tail	phage major tail tube protein	A0A1S5NNH7	Burkholderia_phage	1.6e-89	96.4
WP_017432106.1\|1141448_1142621_-\|tail	phage tail sheath protein	A0A1S5NNH8	Burkholderia_phage	5.6e-218	94.4
WP_017432107.1\|1142732_1143482_-	site-specific DNA-methyltransferase	A0A1S5NPU0	Burkholderia_phage	5.4e-142	97.6
WP_080942760.1\|1143459_1143642_-	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	2.2e-28	98.3
WP_017432108.1\|1143791_1144130_-	hypothetical protein	A0A1S5NQ35	Burkholderia_phage	8.4e-26	57.1
WP_017432109.1\|1144187_1144619_-\|tail	phage tail assembly chaperone	R4JMH4	Burkholderia_phage	6.6e-60	80.4
WP_045678863.1\|1144615_1147723_-	hypothetical protein	A0A1S5NTG6	Burkholderia_phage	0.0e+00	61.6
WP_042967161.1\|1147728_1148280_-\|tail	phage tail protein I	A0A1S5NRL9	Burkholderia_phage	1.2e-98	97.3
WP_017432111.1\|1148272_1149178_-\|plate	baseplate J/gp47 family protein	A0A1S5NR72	Burkholderia_phage	2.6e-159	96.7
WP_017432112.1\|1149174_1149540_-	GPW/gp25 family protein	A0A1S5NNH3	Burkholderia_phage	1.3e-56	92.6
WP_017432113.1\|1149536_1150244_-\|plate	phage baseplate assembly protein V	A0A1S5NNH1	Burkholderia_phage	1.0e-94	82.9
WP_042967162.1\|1150329_1151091_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_017432116.1\|1151144_1151594_-	phage virion morphogenesis protein	A0A1S5NPT5	Burkholderia_phage	4.0e-68	93.2
WP_017432117.1\|1151593_1152004_-\|tail	phage tail protein	A0A1S5NPS3	Burkholderia_phage	6.1e-71	96.3
WP_017432118.1\|1152000_1152492_-	hypothetical protein	A0A1S5NQ26	Burkholderia_phage	4.6e-73	92.0
WP_017432119.1\|1152488_1153289_-	DUF3380 domain-containing protein	A0A1S5NV50	Burkholderia_phage	3.2e-140	96.6
WP_017432120.1\|1153281_1153602_-\|holin	phage holin family protein	A0A1S5NTF8	Burkholderia_phage	1.0e-49	96.2
WP_012327676.1\|1153601_1153976_-\|holin	phage holin family protein	A0A1S5NRL1	Burkholderia_phage	7.8e-57	100.0
WP_017432121.1\|1153978_1154191_-\|tail	tail protein X	A0A1S5NR68	Burkholderia_phage	1.3e-32	94.3
WP_034196661.1\|1154190_1154427_-	hypothetical protein	NA	NA	NA	NA
WP_017432123.1\|1154426_1154909_-\|head	head completion/stabilization protein	A0A1S5NNA6	Burkholderia_phage	1.3e-80	93.8
WP_017432124.1\|1155013_1155700_-\|terminase	terminase endonuclease subunit	A0A1S5NNA5	Burkholderia_phage	2.0e-119	96.5
WP_017432125.1\|1155696_1156716_-\|capsid	phage major capsid protein, P2 family	A0A1S5NPT2	Burkholderia_phage	6.6e-175	90.6
WP_017432126.1\|1156752_1157577_-\|capsid	GPO family capsid scaffolding protein	A0A1S5NPS0	Burkholderia_phage	5.6e-132	90.5
WP_017432127.1\|1157721_1159473_+\|terminase	terminase ATPase subunit family protein	E5E3S6	Burkholderia_phage	0.0e+00	88.9
WP_017432128.1\|1159472_1160525_+\|portal	phage portal protein	A0A1S5NV43	Burkholderia_phage	4.9e-197	96.6
WP_017432129.1\|1160946_1161363_-	hypothetical protein	NA	NA	NA	NA
WP_045678864.1\|1161362_1161827_-	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	2.8e-16	34.8
WP_127913978.1\|1162203_1163547_+	FRG domain-containing protein	NA	NA	NA	NA
WP_017432132.1\|1163606_1164719_-	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	1.0e-205	95.1
WP_017432133.1\|1164728_1165457_-	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	2.6e-48	48.3
WP_045678865.1\|1165453_1165981_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.6e-58	65.1
WP_127913977.1\|1166107_1166752_-	hypothetical protein	NA	NA	NA	NA
WP_017432135.1\|1167037_1167802_+	hypothetical protein	NA	NA	NA	NA
WP_015877383.1\|1168176_1169223_+\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	8.4e-149	74.2
1168005:1168051	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1398842 : 1427355

Pseudomonas_phage(25.0%)

plate,transposase,protease,integrase

attL 1392260:1392277|attR 1441870:1441887

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1392260:1392277	attL	NA	NA	NA	NA
WP_012734445.1\|1398842_1399361_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.2e-20	48.6
WP_017432925.1\|1399629_1400847_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.7e-89	43.0
WP_045678878.1\|1401463_1404325_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	2.5e-70	35.4
WP_004556769.1\|1404452_1404779_-	hypothetical protein	NA	NA	NA	NA
WP_009962289.1\|1404788_1405136_-	hypothetical protein	NA	NA	NA	NA
WP_009962292.1\|1405128_1405341_-	hypothetical protein	NA	NA	NA	NA
WP_015876770.1\|1405333_1405636_-	hypothetical protein	NA	NA	NA	NA
WP_017432173.1\|1405628_1405805_-	hypothetical protein	NA	NA	NA	NA
WP_017432172.1\|1406132_1406657_-	hypothetical protein	NA	NA	NA	NA
WP_013699107.1\|1406653_1406845_-	AlpA family phage regulatory protein	A0A2L0V109	Agrobacterium_phage	4.9e-07	49.1
WP_144415948.1\|1407370_1410268_-	DEAD/DEAH box helicase	A0A2H4UVG1	Bodo_saltans_virus	7.8e-11	24.4
WP_017432170.1\|1410603_1411191_+	recombinase family protein	A0A219Y912	Aeromonas_phage	2.1e-24	41.5
WP_011883089.1\|1411277_1411763_-	hypothetical protein	NA	NA	NA	NA
WP_017432169.1\|1411774_1412908_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_080569283.1\|1413954_1414128_+	DUF3380 domain-containing protein	NA	NA	NA	NA
WP_017432168.1\|1414136_1414313_+	DUF3380 domain-containing protein	NA	NA	NA	NA
WP_127913971.1\|1414309_1414744_+	hypothetical protein	NA	NA	NA	NA
WP_012733678.1\|1414835_1415882_+\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	9.2e-148	72.7
WP_012734474.1\|1416961_1418149_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	9.5e-16	38.0
WP_012734475.1\|1418327_1419119_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012734476.1\|1419115_1420462_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012734477.1\|1420563_1421181_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_012734478.1\|1421550_1422195_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012734479.1\|1422238_1422778_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_012734480.1\|1422792_1424283_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012734481.1\|1424360_1424864_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_012734482.1\|1424941_1425424_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012734483.1\|1425516_1427355_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
1441870:1441887	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1695333 : 1704231

Pandoravirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012734717.1\|1695333_1697295_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	6.6e-147	50.0
WP_012734718.1\|1697516_1698653_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.2e-23	34.0
WP_012734719.1\|1698669_1700520_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	6.8e-53	37.7
WP_012734720.1\|1700548_1701364_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	1.8e-34	30.5
WP_012734721.1\|1701410_1702094_-	deoxynucleoside kinase	NA	NA	NA	NA
WP_012734722.1\|1702090_1702624_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4VNV0	Pandoravirus	6.2e-15	40.5
WP_012734723.1\|1702653_1704231_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	2.8e-23	28.4

DBSCAN-SWA_6

1982650 : 1990981

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012734955.1\|1982650_1984051_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.8e-77	37.1
WP_155297042.1\|1984064_1985000_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.8e-14	26.4
WP_012734957.1\|1985054_1986047_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	2.8e-29	32.8
WP_012734958.1\|1986121_1986445_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_153477922.1\|1986497_1986644_-	hypothetical protein	NA	NA	NA	NA
WP_012734959.1\|1986668_1987571_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	3.1e-51	39.2
WP_012734960.1\|1987659_1988940_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_012734961.1\|1989117_1990041_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.4e-43	35.2
WP_012734962.1\|1990111_1990981_-	alpha/beta hydrolase	P87627	Cowpox_virus	5.7e-26	31.0

DBSCAN-SWA_7

2320759 : 2368365

Burkholderia_virus(29.41%)

lysis,transposase,integrase

attL 2321895:2321910|attR 2360012:2360027

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080569359.1\|2320759_2320939_-\|transposase	transposase	NA	NA	NA	NA
WP_085962370.1\|2321216_2322021_+\|transposase	IS5 family transposase	NA	NA	NA	NA
2321895:2321910	attL	NA	NA	NA	NA
WP_045678893.1\|2323086_2324325_+\|integrase	site-specific integrase	A0A2H4JE37	uncultured_Caudovirales_phage	2.0e-08	27.3
WP_127913965.1\|2324325_2324928_+	hypothetical protein	NA	NA	NA	NA
WP_127913964.1\|2324990_2325176_+	hypothetical protein	NA	NA	NA	NA
WP_017432384.1\|2325219_2325855_+	hypothetical protein	NA	NA	NA	NA
WP_045678894.1\|2325864_2327001_+	hypothetical protein	A0A2H4J138	uncultured_Caudovirales_phage	1.3e-49	34.7
WP_017432381.1\|2327087_2328311_+	DUF4263 domain-containing protein	NA	NA	NA	NA
WP_017432380.1\|2328337_2328940_-	recombinase family protein	NA	NA	NA	NA
WP_042967290.1\|2329569_2329962_+	hypothetical protein	NA	NA	NA	NA
WP_042967288.1\|2329964_2331047_+	XRE family transcriptional regulator	B6SBZ6	Clostridium_virus	1.0e-32	33.5
WP_045678895.1\|2331251_2334590_-	hypothetical protein	A0A2R2ZGH5	Clostridioides_phage	9.9e-10	23.6
WP_045678896.1\|2334607_2337991_-	helicase	A0A2K5B2B9	Erysipelothrix_phage	2.7e-39	27.1
WP_080942766.1\|2338809_2339064_+	hypothetical protein	NA	NA	NA	NA
WP_085962364.1\|2339142_2340346_+\|transposase	IS3-like element ISBugl1 family transposase	A0A1B0Z042	Pseudomonas_phage	1.3e-97	62.4
WP_080942770.1\|2340586_2341093_+	hypothetical protein	NA	NA	NA	NA
WP_080942767.1\|2341103_2341430_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_045678897.1\|2341616_2342195_+	hypothetical protein	NA	NA	NA	NA
WP_127913963.1\|2342287_2343022_+	hypothetical protein	NA	NA	NA	NA
WP_145961913.1\|2343071_2343593_+	hypothetical protein	NA	NA	NA	NA
WP_127913961.1\|2343674_2344880_-	hypothetical protein	NA	NA	NA	NA
WP_015877383.1\|2345368_2346415_+\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	8.4e-149	74.2
WP_127913960.1\|2346496_2347522_-	hypothetical protein	NA	NA	NA	NA
WP_045678899.1\|2347521_2347773_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_127913959.1\|2347896_2349024_-	hypothetical protein	NA	NA	NA	NA
WP_012735240.1\|2349323_2349782_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_012735241.1\|2349933_2350752_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012735242.1\|2350953_2351142_+	hypothetical protein	NA	NA	NA	NA
WP_012735243.1\|2351241_2352603_-	MATE family efflux transporter	NA	NA	NA	NA
WP_012735244.1\|2352611_2352947_-	DUF2288 domain-containing protein	NA	NA	NA	NA
WP_012735245.1\|2353186_2354809_-	acyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	8.6e-60	33.1
WP_012735246.1\|2355128_2355830_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_012735247.1\|2356141_2357050_-	aldose 1-epimerase	NA	NA	NA	NA
WP_162486901.1\|2357354_2357699_-	hypothetical protein	NA	NA	NA	NA
WP_012735248.1\|2357621_2358452_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_012735249.1\|2358849_2359917_-\|integrase	site-specific integrase	K7PHM9	Enterobacterial_phage	1.0e-56	34.7
WP_012735252.1\|2361064_2361652_+	hypothetical protein	NA	NA	NA	NA
2360012:2360027	attR	NA	NA	NA	NA
WP_012735253.1\|2361941_2362328_-	helix-turn-helix transcriptional regulator	Q8W6N2	Burkholderia_virus	1.4e-48	82.0
WP_012735254.1\|2362324_2362582_-	type II toxin-antitoxin system RelE/ParE family toxin	Q8W6N1	Burkholderia_virus	5.7e-35	83.5
WP_012735255.1\|2363895_2364153_+	hypothetical protein	Q6J1Q7	Burkholderia_virus	9.8e-19	56.1
WP_017423130.1\|2364149_2364434_+	hypothetical protein	Q6J1Q6	Burkholderia_virus	8.1e-22	57.6
WP_012735257.1\|2364417_2364840_+	glycoside hydrolase family protein	A0A1Q1PW74	Pseudoalteromonas_phage	2.5e-27	50.4
WP_012735258.1\|2364845_2365394_+\|lysis	lysis protein	Q8W6S5	Burkholderia_virus	2.3e-33	50.8
WP_012734051.1\|2365974_2366451_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012732753.1\|2366426_2366777_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.1e-16	39.4
WP_012732752.1\|2366808_2368365_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.1e-67	34.0

DBSCAN-SWA_8

3019655 : 3059555

Burkholderia_virus(16.67%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015875901.1\|3019655_3020666_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_088499465.1\|3021189_3023031_-	transporter	NA	NA	NA	NA
WP_017432901.1\|3023861_3025334_-	hypothetical protein	NA	NA	NA	NA
WP_085962428.1\|3026439_3027677_-\|transposase	IS3-like element IS1416 family transposase	Q8W6R2	Burkholderia_virus	1.9e-155	94.7
WP_085962362.1\|3027947_3028764_+\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_085962352.1\|3028783_3029588_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_085962353.1\|3029697_3030502_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015875907.1\|3031139_3032756_-	amino acid adenylation domain-containing protein	NA	NA	NA	NA
WP_015875908.1\|3032752_3033706_-	cupin-like domain-containing protein	NA	NA	NA	NA
WP_015875909.1\|3033771_3036045_-	N,N-dimethylformamidase large subunit	NA	NA	NA	NA
WP_158335152.1\|3036041_3037700_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.9e-22	25.1
WP_015875911.1\|3037781_3038948_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_017433090.1\|3038994_3039282_-	hypothetical protein	NA	NA	NA	NA
WP_080763615.1\|3039317_3040337_-	hypothetical protein	NA	NA	NA	NA
WP_015875913.1\|3040349_3041342_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.5e-152	83.3
WP_017432258.1\|3041754_3042810_+	hypothetical protein	NA	NA	NA	NA
WP_158335153.1\|3042779_3043658_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_015875915.1\|3044600_3045539_-	nucleoside-diphosphate kinase	NA	NA	NA	NA
WP_035983864.1\|3045560_3046733_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_015875917.1\|3046849_3047824_+	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA
WP_015875918.1\|3047849_3049088_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_015875919.1\|3049084_3049789_-	cupin domain-containing protein	NA	NA	NA	NA
WP_015875920.1\|3049978_3051037_-	zinc-binding alcohol dehydrogenase	NA	NA	NA	NA
WP_015875921.1\|3051095_3051434_-	hypothetical protein	NA	NA	NA	NA
WP_015875922.1\|3051481_3052534_-	nucleoside-diphosphate kinase	NA	NA	NA	NA
WP_015875923.1\|3052530_3055761_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	7.0e-69	22.9
WP_015875924.1\|3055800_3057231_-	MFS transporter	NA	NA	NA	NA
WP_158335154.1\|3057634_3058417_+	metallophosphoesterase	A0A218MKA7	uncultured_virus	2.7e-19	29.1
WP_015877383.1\|3058508_3059555_+\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	8.4e-149	74.2

DBSCAN-SWA_9

3144015 : 3196638

uncultured_virus(27.27%)

portal,transposase,capsid,tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015875993.1\|3144015_3144972_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_015875994.1\|3145008_3145377_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_017423930.1\|3145490_3148457_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.1e-20	24.6
WP_015875996.1\|3148550_3150026_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_015875997.1\|3150022_3150484_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_039202366.1\|3150788_3152504_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_015875999.1\|3152565_3153648_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.3e-22	35.1
WP_015876000.1\|3153934_3155134_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_015876001.1\|3155245_3156148_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015876002.1\|3156543_3156945_+\|transposase	transposase	NA	NA	NA	NA
WP_080569365.1\|3157164_3157419_+	hypothetical protein	NA	NA	NA	NA
WP_015876004.1\|3157583_3157901_-	hypothetical protein	NA	NA	NA	NA
WP_017423839.1\|3158089_3158806_+	YdcF family protein	NA	NA	NA	NA
WP_015876006.1\|3159059_3159320_+	hypothetical protein	NA	NA	NA	NA
WP_015876007.1\|3159476_3159734_+	hypothetical protein	NA	NA	NA	NA
WP_015876008.1\|3159790_3160081_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_127913946.1\|3160247_3160433_-	hypothetical protein	NA	NA	NA	NA
WP_015876009.1\|3160578_3161781_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_015876011.1\|3163169_3163541_-	DUF1493 family protein	NA	NA	NA	NA
WP_127913945.1\|3164723_3165671_-	hypothetical protein	NA	NA	NA	NA
WP_015876012.1\|3166165_3166633_+	hypothetical protein	C7BGE3	Burkholderia_phage	2.0e-09	37.7
WP_015876013.1\|3166662_3167454_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.5e-118	73.4
WP_015876014.1\|3167596_3168400_-	patatin-like phospholipase family protein	A0A1X7QFZ0	Faustovirus	3.9e-05	28.8
WP_015876015.1\|3168396_3168876_-	hypothetical protein	NA	NA	NA	NA
WP_045678918.1\|3168949_3169273_-	hypothetical protein	NA	NA	NA	NA
WP_017432426.1\|3169334_3169790_-	glucosaminidase domain-containing protein	Q9ZXE4	Bacillus_phage	1.7e-13	36.4
WP_015876017.1\|3169792_3170200_-	hypothetical protein	NA	NA	NA	NA
WP_015876018.1\|3170230_3172201_-	transporter	NA	NA	NA	NA
WP_017432425.1\|3172216_3172444_-	hypothetical protein	NA	NA	NA	NA
WP_015876020.1\|3174147_3174894_-	hypothetical protein	NA	NA	NA	NA
WP_015876021.1\|3174894_3176016_-\|plate	baseplate J/gp47 family protein	B3GAJ9	uncultured_virus	1.9e-45	39.4
WP_015876022.1\|3176016_3176424_-	hypothetical protein	NA	NA	NA	NA
WP_015876023.1\|3176423_3177143_-\|plate	phage baseplate assembly protein V	B3GAJ7	uncultured_virus	2.9e-15	33.3
WP_015876024.1\|3177139_3178258_-	hypothetical protein	NA	NA	NA	NA
WP_015876025.1\|3178261_3179227_-	hypothetical protein	NA	NA	NA	NA
WP_015876026.1\|3179228_3181136_-	hypothetical protein	A4JWS3	Burkholderia_virus	5.4e-29	28.9
WP_017433231.1\|3181170_3181422_+	hypothetical protein	NA	NA	NA	NA
WP_015876027.1\|3181405_3181888_-	hypothetical protein	NA	NA	NA	NA
WP_015876028.1\|3182054_3182465_-	hypothetical protein	NA	NA	NA	NA
WP_015876029.1\|3182474_3182915_-	hypothetical protein	NA	NA	NA	NA
WP_015876030.1\|3183009_3185010_-\|tail	phage tail sheath protein	B3GAJ6	uncultured_virus	3.4e-66	31.5
WP_043307268.1\|3185071_3185287_-	hypothetical protein	NA	NA	NA	NA
WP_015876031.1\|3185295_3186138_-	hypothetical protein	NA	NA	NA	NA
WP_015876032.1\|3186138_3186492_-	hypothetical protein	NA	NA	NA	NA
WP_015876033.1\|3186488_3187427_-	hypothetical protein	NA	NA	NA	NA
WP_043307270.1\|3187428_3187821_-	hypothetical protein	NA	NA	NA	NA
WP_015876034.1\|3187817_3188102_-	hypothetical protein	NA	NA	NA	NA
WP_015876035.1\|3188183_3189242_-	hypothetical protein	NA	NA	NA	NA
WP_015876036.1\|3189291_3190755_-	hypothetical protein	NA	NA	NA	NA
WP_017433413.1\|3190763_3191018_-	hypothetical protein	NA	NA	NA	NA
WP_017433414.1\|3191068_3191278_-	hypothetical protein	NA	NA	NA	NA
WP_015876037.1\|3191335_3191644_-	hypothetical protein	NA	NA	NA	NA
WP_080942771.1\|3191709_3193017_-\|portal	phage portal protein	NA	NA	NA	NA
WP_045678919.1\|3193078_3194638_-	hypothetical protein	Q775B9	Bordetella_phage	7.9e-127	49.3
WP_015876040.1\|3194543_3195071_-	hypothetical protein	NA	NA	NA	NA
WP_042967364.1\|3195186_3195480_+	hypothetical protein	NA	NA	NA	NA
WP_127913944.1\|3195593_3195866_-	hypothetical protein	NA	NA	NA	NA
WP_127913943.1\|3196338_3196638_-\|capsid	phage capsid protein	NA	NA	NA	NA

DBSCAN-SWA_10

3211089 : 3225236

Pseudomonas_phage(25.0%)

integrase

attL 3211688:3211703|attR 3227077:3227092

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015876058.1\|3211089_3211341_+	hypothetical protein	V5YUQ9	Pseudomonas_phage	1.2e-08	70.3
WP_017432510.1\|3211340_3211496_+	hypothetical protein	NA	NA	NA	NA
WP_015876059.1\|3211513_3212416_+	ERF family protein	K7ZLF1	Xanthomonas_citri_phage	6.5e-41	49.5
3211688:3211703	attL	NA	NA	NA	NA
WP_015876060.1\|3212408_3214043_+	YqaJ viral recombinase family protein	A0A2H4J6P1	uncultured_Caudovirales_phage	1.9e-86	43.4
WP_015876061.1\|3214079_3214724_+	hypothetical protein	NA	NA	NA	NA
WP_015876062.1\|3214823_3215489_+	hypothetical protein	NA	NA	NA	NA
WP_015876063.1\|3215485_3215953_+	DUF3268 family zinc-finger domain-containing protein	A9YX19	Burkholderia_phage	3.1e-55	70.4
WP_015876064.1\|3215949_3216144_+	hypothetical protein	A9YX20	Burkholderia_phage	2.6e-16	71.4
WP_043307279.1\|3216146_3216557_+	hypothetical protein	NA	NA	NA	NA
WP_015876065.1\|3216572_3218483_+	DNA methyltransferase	L7TH64	Pseudomonas_virus	6.4e-163	55.7
WP_015876066.1\|3218496_3218976_+	hypothetical protein	A0A0K2FHI1	Achromobacter_phage	5.3e-34	45.8
WP_042967310.1\|3220684_3220942_+	hypothetical protein	A0A2H4P7L2	Pseudomonas_phage	1.5e-19	53.2
WP_017432407.1\|3220951_3221344_+	hypothetical protein	NA	NA	NA	NA
WP_045678921.1\|3221441_3221669_-	hypothetical protein	NA	NA	NA	NA
WP_015876068.1\|3221704_3222649_+	phage Gp37/Gp68 family protein	Q8W6R4	Burkholderia_virus	2.5e-99	57.1
WP_015876069.1\|3222645_3223221_-	hypothetical protein	NA	NA	NA	NA
WP_015876070.1\|3223219_3223858_+	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	7.1e-26	39.0
WP_015876071.1\|3223854_3224103_+	DUF4224 domain-containing protein	Q8W6R6	Burkholderia_virus	6.2e-10	46.7
WP_015876072.1\|3224099_3225236_+\|integrase	tyrosine-type recombinase/integrase	Q6JIJ8	Burkholderia_virus	1.9e-82	44.8
3227077:3227092	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3458264 : 3469718

Mannheimia_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015877383.1\|3458264_3459311_+\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	8.4e-149	74.2
WP_017425184.1\|3459425_3459674_-	hypothetical protein	NA	NA	NA	NA
WP_015876292.1\|3459686_3460418_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_127913936.1\|3461359_3461620_+	hypothetical protein	NA	NA	NA	NA
WP_085962361.1\|3461632_3461842_-	hypothetical protein	Q8W6R1	Burkholderia_virus	2.1e-11	57.4
WP_015876293.1\|3462565_3463144_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_015876294.1\|3463152_3463956_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_085962362.1\|3464388_3465205_+\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_144415949.1\|3465321_3465567_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_102952644.1\|3465538_3465790_+\|transposase	transposase	NA	NA	NA	NA
WP_012732735.1\|3466001_3466457_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_015877383.1\|3466512_3467559_-\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	8.4e-149	74.2
WP_012732734.1\|3467678_3468032_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.1e-19	40.4
WP_012732733.1\|3468131_3469718_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.5e-56	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

129002 : 192908

Mycobacterium_phage(10.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157384227.1\|129002_129221_+\|transposase	transposase	NA	NA	NA	NA
WP_045678719.1\|129751_131395_-	MCP four helix bundle domain-containing protein	NA	NA	NA	NA
WP_012733079.1\|132166_132847_+	YfdX family protein	NA	NA	NA	NA
WP_012733078.1\|133050_133470_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_017424503.1\|133573_133981_-	hypothetical protein	NA	NA	NA	NA
WP_012733077.1\|134150_134642_+	low affinity iron permease family protein	Q19XG2	Mycobacterium_phage	1.5e-07	42.3
WP_012733076.1\|135067_135658_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012733075.1\|135703_136822_-	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_153478468.1\|136978_137119_-	hypothetical protein	NA	NA	NA	NA
WP_012733074.1\|137861_138044_+	hypothetical protein	NA	NA	NA	NA
WP_012733073.1\|138057_139455_+	ATP-dependent RNA helicase DbpA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	2.8e-43	30.5
WP_017424497.1\|139627_139765_-	hypothetical protein	NA	NA	NA	NA
WP_012733072.1\|139984_141190_-	porin	NA	NA	NA	NA
WP_085962358.1\|141614_142819_-\|transposase	IS3-like element IS1417 family transposase	A0A1B0Z042	Pseudomonas_phage	1.0e-97	63.1
WP_012733071.1\|143100_144009_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012733070.1\|144837_147210_+	DNA polymerase II	L7TKF2	Halovirus	1.2e-28	22.1
WP_085962356.1\|147559_148377_-\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_012733069.1\|148676_149888_-	galactose mutarotase	NA	NA	NA	NA
WP_012733068.1\|150332_151142_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA
WP_012733067.1\|151456_151783_+	thioredoxin family protein	NA	NA	NA	NA
WP_012733066.1\|151797_152214_+	YjbQ family protein	NA	NA	NA	NA
WP_012733065.1\|152266_153301_-	Zn-dependent oxidoreductase	NA	NA	NA	NA
WP_012733064.1\|153353_154562_-	D-galactonate dehydratase family protein	Q6A202	Oenococcus_phage	1.6e-42	29.5
WP_012733063.1\|154628_155360_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012733062.1\|155505_156978_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	2.9e-46	33.1
WP_012733061.1\|157098_158409_+	MFS transporter	NA	NA	NA	NA
WP_127913870.1\|158988_159168_-	hypothetical protein	NA	NA	NA	NA
WP_012733060.1\|159361_161017_+	c-type cytochrome	NA	NA	NA	NA
WP_012733059.1\|161013_161673_+	molecular chaperone TorD family protein	NA	NA	NA	NA
WP_017432137.1\|161682_164205_+	trimethylamine-N-oxide reductase TorA	A0A077SK27	Escherichia_phage	1.6e-89	30.9
WP_012733057.1\|164336_165119_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_012733056.1\|165181_165982_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_080569371.1\|166429_166651_+\|transposase	transposase	NA	NA	NA	NA
WP_162486896.1\|166584_166752_-	hypothetical protein	NA	NA	NA	NA
WP_012733055.1\|166763_167411_+	response regulator transcription factor	NA	NA	NA	NA
WP_012733054.1\|167800_168919_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_012733053.1\|168915_169602_-	Fe2+-dependent dioxygenase	Q5GQB0	Synechococcus_phage	2.6e-18	33.2
WP_012733052.1\|169729_171952_-	TonB-dependent receptor	NA	NA	NA	NA
WP_012733051.1\|173841_174993_-	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_012733050.1\|175016_176162_-	DUF2827 domain-containing protein	NA	NA	NA	NA
WP_012733049.1\|176158_177478_-	YadA-like family protein	NA	NA	NA	NA
WP_012733048.1\|179550_180030_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_173941228.1\|181281_181812_+	hypothetical protein	NA	NA	NA	NA
WP_157384073.1\|182070_182487_+	response regulator	NA	NA	NA	NA
WP_012733047.1\|182754_185076_-	response regulator	A0A1V0SGX0	Hokovirus	2.4e-23	32.9
WP_017432145.1\|185072_185336_-	hypothetical protein	NA	NA	NA	NA
WP_012733046.1\|185390_188192_-	type VI secretion system ATPase TssH	A0A2I7SAX5	Vibrio_phage	2.4e-73	30.6
WP_012733045.1\|188506_189694_+	TagK domain-containing protein	NA	NA	NA	NA
WP_012733044.1\|189677_190511_+	virulence protein SciE type	NA	NA	NA	NA
WP_012733043.1\|190507_191026_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012733042.1\|191027_192908_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

420925 : 499144

Burkholderia_phage(83.33%)

transposase,tail,protease,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015878214.1\|420925_422302_+\|protease	Zn-dependent protease	NA	NA	NA	NA
WP_100555937.1\|422343_422955_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015878212.1\|422951_423533_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045678723.1\|423542_426659_+	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	5.2e-45	21.1
WP_015878210.1\|426773_429416_+	transglycosylase domain-containing protein	NA	NA	NA	NA
WP_017433441.1\|429667_429817_+	hypothetical protein	NA	NA	NA	NA
WP_015878209.1\|430216_430492_-	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_013691668.1\|430779_430857_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA
WP_015878208.1\|430981_431893_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA
WP_015878207.1\|431950_432709_+	pyrroloquinoline-quinone synthase PqqC	NA	NA	NA	NA
WP_015878206.1\|432708_432984_+	pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA	NA	NA	NA
WP_035979037.1\|433042_434170_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA
WP_015878204.1\|434138_436007_+	S9 family peptidase	NA	NA	NA	NA
WP_015878203.1\|436127_437297_-	porin	NA	NA	NA	NA
WP_015878202.1\|438062_438701_+	LysE family translocator	NA	NA	NA	NA
WP_015878201.1\|438777_439938_-	porin	NA	NA	NA	NA
WP_015878200.1\|440680_442759_+	carbon starvation protein A	NA	NA	NA	NA
WP_015878199.1\|442773_442980_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_127913875.1\|443023_443299_+	hypothetical protein	NA	NA	NA	NA
WP_015878198.1\|443361_443643_-	hypothetical protein	NA	NA	NA	NA
WP_015878197.1\|443836_444373_-	chromate transporter	NA	NA	NA	NA
WP_015878196.1\|444384_444972_-	chromate transporter	NA	NA	NA	NA
WP_015878195.1\|445353_446514_-	adenosyl-hopene transferase HpnH	NA	NA	NA	NA
WP_015878194.1\|446526_447468_-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_015878193.1\|447823_449011_+	glycosyltransferase	NA	NA	NA	NA
WP_015878192.1\|449123_450467_-	hypothetical protein	NA	NA	NA	NA
WP_015878191.1\|450749_451760_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_015878190.1\|451922_452219_+	acylphosphatase	NA	NA	NA	NA
WP_015878189.1\|452232_453129_+	EamA family transporter RarD	NA	NA	NA	NA
WP_015878188.1\|453572_454691_+	OpgC domain-containing protein	NA	NA	NA	NA
WP_015878187.1\|454815_455022_-	hypothetical protein	NA	NA	NA	NA
WP_015878186.1\|455124_456648_-	MFS transporter	A0A0P0IY73	Acinetobacter_phage	6.7e-38	27.2
WP_015878185.1\|457313_457895_+	cupin domain-containing protein	NA	NA	NA	NA
WP_015878184.1\|458179_459634_+	outer membrane porin, OprD family	NA	NA	NA	NA
WP_015878183.1\|459677_460667_-	DedA family protein/thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_015878182.1\|460841_461111_-	hypothetical protein	NA	NA	NA	NA
WP_015878181.1\|461292_462696_-	GntP family permease	NA	NA	NA	NA
WP_026051701.1\|464013_464193_+	hypothetical protein	NA	NA	NA	NA
WP_015878179.1\|464294_464585_+	H-NS histone family protein	NA	NA	NA	NA
WP_015878178.1\|465173_467564_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015878177.1\|467963_468515_-	hypothetical protein	NA	NA	NA	NA
WP_015878176.1\|469380_469998_+	hypothetical protein	NA	NA	NA	NA
WP_015878175.1\|470188_473176_+	EAL domain-containing protein	NA	NA	NA	NA
WP_015878174.1\|473750_474179_-\|tail	tail fiber assembly protein	A4JWL9	Burkholderia_virus	1.6e-26	57.5
WP_015878173.1\|474183_475140_-	hypothetical protein	A4JWL8	Burkholderia_virus	5.5e-22	35.4
WP_015878172.1\|475152_475749_-	DUF2313 domain-containing protein	B5TAB0	Burkholderia_phage	2.0e-62	63.8
WP_017432231.1\|475748_476870_-\|plate	baseplate J/gp47 family protein	B5TAA9	Burkholderia_phage	2.8e-150	71.3
WP_169511631.1\|476866_477454_-	phage GP46 family protein	B5TAA8	Burkholderia_phage	1.5e-78	70.3
WP_015878169.1\|477538_478054_-\|plate	phage baseplate assembly protein	B5TAA7	Burkholderia_phage	1.0e-54	62.0
WP_015878168.1\|478050_479220_-	hypothetical protein	B5TAA6	Burkholderia_phage	1.3e-174	76.9
WP_015878167.1\|479223_480594_-	DNA circularization N-terminal domain-containing protein	B5TAA5	Burkholderia_phage	6.1e-192	75.3
WP_015878166.1\|480597_482988_-\|tail	phage tail tape measure protein	B5TAA4	Burkholderia_phage	3.2e-180	61.7
WP_017432229.1\|483036_483585_-\|tail	phage tail assembly protein	B5TAA3	Burkholderia_phage	4.1e-62	67.9
WP_017432228.1\|483674_484046_-	hypothetical protein	B5TAA2	Burkholderia_phage	2.8e-43	68.3
WP_015878165.1\|484093_485572_-\|tail	tail sheath protein	B5TAA1	Burkholderia_phage	3.3e-215	74.6
WP_102952619.1\|485622_485889_-	hypothetical protein	B5TAA0	Burkholderia_phage	2.6e-14	56.4
WP_017432226.1\|485857_486472_-	hypothetical protein	B5TA99	Burkholderia_phage	7.5e-49	49.0
WP_015878164.1\|486471_486906_-	phage virion morphogenesis protein	B5TA98	Burkholderia_phage	1.8e-44	64.3
WP_015878163.1\|487496_487895_-	hypothetical protein	B5TA91	Burkholderia_phage	6.4e-49	78.0
WP_017432225.1\|487891_488275_-	regulatory protein GemA	B5TA90	Burkholderia_phage	1.8e-56	89.8
WP_085962362.1\|488396_489213_+\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_158335143.1\|489138_489570_-	hypothetical protein	B5TA89	Burkholderia_phage	1.4e-30	87.2
WP_167343584.1\|489566_489734_-	hypothetical protein	NA	NA	NA	NA
WP_127913876.1\|489730_489946_-	hypothetical protein	NA	NA	NA	NA
WP_015878161.1\|489953_490946_-	AAA family ATPase	B5TA81	Burkholderia_phage	1.0e-172	92.1
WP_017432569.1\|490955_492581_-\|transposase	Mu transposase C-terminal domain-containing protein	B5TA80	Burkholderia_phage	2.0e-298	94.3
WP_017432570.1\|492620_493670_-	hypothetical protein	B5TA79	Burkholderia_phage	5.3e-135	74.1
WP_015878158.1\|493666_493858_-	DNA-binding protein	B5TA78	Burkholderia_phage	1.5e-27	95.2
WP_015878157.1\|493939_494410_+	helix-turn-helix transcriptional regulator	B5TA77	Burkholderia_phage	7.2e-68	87.2
WP_080569416.1\|494464_494998_+	hypothetical protein	B5TA76	Burkholderia_phage	9.6e-85	91.5
WP_015878156.1\|495729_496104_+\|holin	putative holin	B5TA74	Burkholderia_phage	1.0e-56	89.5
WP_015878155.1\|496100_496772_+	transglycosylase SLT domain-containing protein	B5TA73	Burkholderia_phage	3.3e-98	78.0
WP_042967439.1\|496768_497230_+	hypothetical protein	NA	NA	NA	NA
WP_035978615.1\|497558_497849_+	hypothetical protein	B5TA70	Burkholderia_phage	2.2e-38	85.3
WP_012734099.1\|498097_499144_-\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	3.8e-149	74.2

DBSCAN-SWA_3

613924 : 629234

Leptospira_phage(66.67%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015878077.1\|613924_615991_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_015878076.1\|616283_617471_+	amidohydrolase	NA	NA	NA	NA
WP_015878075.1\|617640_618144_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_035979370.1\|618165_618975_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_015878073.1\|618974_619199_-	ParD-like family protein	NA	NA	NA	NA
WP_015878072.1\|620155_621826_+	hypothetical protein	NA	NA	NA	NA
WP_012732720.1\|622011_622809_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	4.4e-33	37.7
WP_012732721.1\|622801_624307_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_085962356.1\|625130_625947_+\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_012732752.1\|625975_627532_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.1e-67	34.0
WP_012732753.1\|627563_627914_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.1e-16	39.4
WP_085962370.1\|628037_628843_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_133164453.1\|628886_629234_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1165796 : 1204365

Leptospira_phage(18.18%)

tRNA,transposase,integrase

attL 1171620:1171658|attR 1206257:1206295

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015877383.1\|1165796_1166843_-\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	8.4e-149	74.2
WP_085962356.1\|1167150_1167967_+\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_015877638.1\|1168060_1168912_-	hypothetical protein	NA	NA	NA	NA
WP_015877637.1\|1168908_1170051_-	site-specific DNA-methyltransferase	H9YPF1	environmental_Halophage	2.5e-45	34.3
WP_085962428.1\|1170386_1171623_+\|transposase	IS3-like element IS1416 family transposase	Q8W6R2	Burkholderia_virus	1.9e-155	94.7
1171620:1171658	attL	NA	NA	NA	NA
WP_015877636.1\|1171663_1172647_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.9e-23	32.4
WP_015877635.1\|1172706_1172991_-	hypothetical protein	NA	NA	NA	NA
WP_015877634.1\|1172987_1173470_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_015877633.1\|1174050_1174290_-	hypothetical protein	NA	NA	NA	NA
WP_015877632.1\|1174820_1176971_+	FUSC family protein	NA	NA	NA	NA
WP_015877631.1\|1177152_1177920_-	TIGR00730 family Rossman fold protein	A0A1D8KUT5	Synechococcus_phage	2.4e-20	36.0
WP_015877630.1\|1177921_1180675_+	DNA polymerase I	S5M8J1	Bacillus_phage	5.9e-69	29.4
WP_017423610.1\|1180902_1182273_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_015877628.1\|1182501_1183377_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_017432263.1\|1183392_1184262_-	sulfurtransferase	NA	NA	NA	NA
WP_015877626.1\|1184365_1185472_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_015877625.1\|1185741_1186035_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_015877624.1\|1186031_1186916_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_015877623.1\|1187001_1188906_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_015877622.1\|1189075_1189882_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_015877621.1\|1189956_1190997_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.1e-92	52.6
WP_015877620.1\|1191226_1192444_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_006479415.1\|1192522_1192735_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_015877618.1\|1192919_1193366_+	GatB/YqeY domain-containing protein	NA	NA	NA	NA
WP_015877617.1\|1193418_1195305_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.2e-66	36.4
WP_015877616.1\|1195434_1197852_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.2e-35	32.3
WP_015877615.1\|1198276_1199575_-	TniQ family protein	NA	NA	NA	NA
WP_017432261.1\|1199571_1199865_-	hypothetical protein	NA	NA	NA	NA
WP_012734051.1\|1199984_1200461_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012732753.1\|1200436_1200787_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.1e-16	39.4
WP_012732752.1\|1200818_1202375_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.1e-67	34.0
WP_017432186.1\|1203129_1204365_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
1206257:1206295	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1477467 : 1525561

Streptococcus_phage(33.33%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015877399.1\|1477467_1478235_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_015877398.1\|1478282_1479281_-	HpnL family protein	NA	NA	NA	NA
WP_015877397.1\|1479277_1480087_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_015877396.1\|1480083_1480764_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_039205372.1\|1481625_1482765_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015877394.1\|1482782_1483520_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	2.0e-48	41.0
WP_017432596.1\|1483784_1484738_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015877392.1\|1484870_1486769_+	S9 family peptidase	NA	NA	NA	NA
WP_015877391.1\|1486825_1487872_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_026051440.1\|1487975_1489328_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_080569399.1\|1489499_1489889_-	thermostable hemolysin	NA	NA	NA	NA
WP_017432593.1\|1490468_1490633_+	hypothetical protein	NA	NA	NA	NA
WP_015877389.1\|1490697_1491924_+	cyanate transporter	NA	NA	NA	NA
WP_015877388.1\|1492315_1493725_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_015877387.1\|1494586_1494784_-	hypothetical protein	NA	NA	NA	NA
WP_017423687.1\|1494855_1495152_-	hypothetical protein	NA	NA	NA	NA
WP_085962362.1\|1495300_1496118_-\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_039202873.1\|1496526_1497300_+	hypothetical protein	NA	NA	NA	NA
WP_015877386.1\|1497296_1498541_+	hypothetical protein	NA	NA	NA	NA
WP_015877385.1\|1498558_1499128_+	hypothetical protein	NA	NA	NA	NA
WP_015877384.1\|1499645_1501493_+	peptidase C11	NA	NA	NA	NA
WP_015877383.1\|1502476_1503523_+\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	8.4e-149	74.2
WP_045678740.1\|1503993_1508676_+	RHS repeat protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.7e-52	45.3
WP_017432434.1\|1508684_1509047_+	hypothetical protein	NA	NA	NA	NA
WP_173941242.1\|1509129_1509507_+	hypothetical protein	NA	NA	NA	NA
WP_015877381.1\|1509503_1509785_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_015877380.1\|1509781_1510279_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015877379.1\|1510359_1510857_+	ProQ activator of osmoprotectant transporter prop	NA	NA	NA	NA
WP_015877377.1\|1512270_1512582_+	hypothetical protein	NA	NA	NA	NA
WP_085962370.1\|1512547_1513353_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015877376.1\|1514343_1515693_-	allantoin permease	NA	NA	NA	NA
WP_015877375.1\|1515914_1516910_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA
WP_015877374.1\|1516899_1517775_-	allophanate hydrolase subunit 1	NA	NA	NA	NA
WP_015877373.1\|1517771_1519229_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_015877372.1\|1519233_1519476_-	biotin carboxyl carrier domain-containing protein	NA	NA	NA	NA
WP_015877371.1\|1519498_1520281_-	5-oxoprolinase subunit PxpA	NA	NA	NA	NA
WP_015877370.1\|1520539_1521457_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_017432591.1\|1521496_1521766_+	hypothetical protein	NA	NA	NA	NA
WP_015877368.1\|1522351_1523506_+	flagellin	NA	NA	NA	NA
WP_085962370.1\|1523707_1524512_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_088499487.1\|1524744_1525561_+\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1769626 : 1806918

Cronobacter_phage(50.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085962370.1\|1769626_1770432_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_102952634.1\|1771691_1772525_-	putative DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012733896.1\|1772571_1773591_-	DUF692 domain-containing protein	NA	NA	NA	NA
WP_012733895.1\|1773602_1775726_-	hypothetical protein	NA	NA	NA	NA
WP_127913901.1\|1775878_1776364_-	hypothetical protein	NA	NA	NA	NA
WP_012733894.1\|1776393_1777743_+	DUF2252 family protein	NA	NA	NA	NA
WP_012733893.1\|1777820_1778327_-	hypothetical protein	NA	NA	NA	NA
WP_012733892.1\|1778570_1778999_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012733891.1\|1779012_1781721_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	7.6e-85	30.7
WP_012733890.1\|1781858_1782344_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_012733889.1\|1782441_1784250_-	OmpA family protein	NA	NA	NA	NA
WP_012733888.1\|1784246_1784978_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012733887.1\|1784974_1786327_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012733886.1\|1786822_1787335_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_012733082.1\|1787377_1788910_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_045678747.1\|1789007_1791368_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_017432307.1\|1791375_1792329_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_012733882.1\|1792380_1795230_+	hypothetical protein	NA	NA	NA	NA
WP_012733880.1\|1796023_1796275_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_085962364.1\|1796561_1797765_+\|transposase	IS3-like element ISBugl1 family transposase	A0A1B0Z042	Pseudomonas_phage	1.3e-97	62.4
WP_050811447.1\|1797813_1798869_+	hypothetical protein	NA	NA	NA	NA
WP_012733879.1\|1798865_1802390_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_012733878.1\|1802386_1803973_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_012733877.1\|1803985_1805800_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012733876.1\|1805796_1806918_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_7

2293926 : 2369816

Emiliania_huxleyi_virus(33.33%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012733559.1\|2293926_2294304_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012733558.1\|2294311_2296162_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_039201514.1\|2296170_2297322_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012733556.1\|2297318_2299961_+	type IV secretion protein Rhs	NA	NA	NA	NA
WP_012733555.1\|2299967_2302604_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_012733554.1\|2302600_2303671_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012733553.1\|2303670_2304225_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_012733552.1\|2304263_2304662_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_012733551.1\|2304665_2305136_+	hypothetical protein	NA	NA	NA	NA
WP_017423034.1\|2305224_2306625_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012733549.1\|2306617_2307397_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012733548.1\|2307422_2311442_+	type VI secretion protein	NA	NA	NA	NA
WP_012733547.1\|2311438_2312584_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_017432327.1\|2312614_2313733_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_153478680.1\|2313773_2314094_-	hypothetical protein	NA	NA	NA	NA
WP_017432330.1\|2314404_2314740_+	hypothetical protein	NA	NA	NA	NA
WP_017425017.1\|2314855_2315272_+	hypothetical protein	NA	NA	NA	NA
WP_127913860.1\|2315330_2315705_-	hypothetical protein	NA	NA	NA	NA
WP_017432332.1\|2315832_2316111_+	hypothetical protein	NA	NA	NA	NA
WP_017425208.1\|2316139_2316376_-	hypothetical protein	NA	NA	NA	NA
WP_012733546.1\|2316439_2317411_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_158335145.1\|2317916_2318087_+	hypothetical protein	NA	NA	NA	NA
WP_017432333.1\|2318342_2318819_-	hypothetical protein	NA	NA	NA	NA
WP_039201545.1\|2319004_2319673_-	ligase-associated DNA damage response endonuclease PdeM	NA	NA	NA	NA
WP_039201548.1\|2319665_2322458_-	ligase-associated DNA damage response DEXH box helicase	NA	NA	NA	NA
WP_012733543.1\|2322454_2324122_-	ATP-dependent DNA ligase	G4YAC1	Emiliania_huxleyi_virus	1.8e-12	24.2
WP_012733542.1\|2324118_2325174_-	ligase-associated DNA damage response exonuclease	NA	NA	NA	NA
WP_012733541.1\|2325498_2326980_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_012733540.1\|2327337_2333250_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.6e-183	37.4
WP_012733539.1\|2333401_2333788_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_012733538.1\|2333874_2334795_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012733537.1\|2335287_2335686_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_012733536.1\|2336173_2337976_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	7.4e-20	36.3
WP_045678824.1\|2338661_2340623_+	glycoside hydrolase family 28 protein	NA	NA	NA	NA
WP_035982664.1\|2341078_2343247_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_012733533.1\|2344231_2345893_-	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_174484817.1\|2345889_2347023_-	hypothetical protein	NA	NA	NA	NA
WP_012733531.1\|2347101_2348040_-	catechol 1,2-dioxygenase	NA	NA	NA	NA
WP_012733530.1\|2348084_2348375_-	muconolactone Delta-isomerase	NA	NA	NA	NA
WP_012733529.1\|2348402_2349566_-	muconate cycloisomerase	NA	NA	NA	NA
WP_012733528.1\|2349689_2350571_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_017433005.1\|2350586_2350925_-	DUF2795 domain-containing protein	NA	NA	NA	NA
WP_012733526.1\|2350946_2351654_-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_017423701.1\|2351703_2351946_-	hypothetical protein	NA	NA	NA	NA
WP_012733524.1\|2352224_2352722_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_017423699.1\|2354223_2354424_-	hypothetical protein	NA	NA	NA	NA
WP_045678765.1\|2354640_2355837_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_012733522.1\|2356409_2357798_+	glycoside hydrolase	NA	NA	NA	NA
WP_012733521.1\|2358023_2359196_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_012733520.1\|2359421_2360057_+	DUF1295 domain-containing protein	NA	NA	NA	NA
WP_035980332.1\|2360271_2361186_+	delta(1)-pyrroline-2-carboxylate reductase family protein	NA	NA	NA	NA
WP_012733518.1\|2361383_2361566_-	CsbD family protein	NA	NA	NA	NA
WP_017432641.1\|2361725_2363303_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012733516.1\|2363616_2364621_+	hypothetical protein	NA	NA	NA	NA
WP_012733515.1\|2364680_2364929_+	hypothetical protein	NA	NA	NA	NA
WP_017432642.1\|2365699_2365888_-	hypothetical protein	NA	NA	NA	NA
WP_088499487.1\|2368050_2368868_-\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_085962421.1\|2369011_2369816_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

2391534 : 2462491

Staphylococcus_phage(20.0%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042967437.1\|2391534_2391861_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_127913864.1\|2391974_2392844_-	hypothetical protein	NA	NA	NA	NA
WP_080763640.1\|2392924_2394655_-	hypothetical protein	NA	NA	NA	NA
WP_012733489.1\|2394651_2397330_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.2e-51	26.2
WP_085962428.1\|2398677_2399915_-\|transposase	IS3-like element IS1416 family transposase	Q8W6R2	Burkholderia_virus	1.9e-155	94.7
WP_035981535.1\|2401852_2402098_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_012733486.1\|2402813_2403581_+	coniferyl-alcohol dehydrogenase	NA	NA	NA	NA
WP_012733485.1\|2403618_2405091_+	benzaldehyde dehydrogenase	NA	NA	NA	NA
WP_012733484.1\|2405162_2405996_+	p-hydroxycinnamoyl CoA hydratase/lyase	NA	NA	NA	NA
WP_012733483.1\|2406014_2408174_+	acetate--CoA ligase family protein	NA	NA	NA	NA
WP_012733482.1\|2408227_2408701_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_045678769.1\|2409055_2410342_+	MFS transporter	NA	NA	NA	NA
WP_012733480.1\|2410451_2411531_+	porin	NA	NA	NA	NA
WP_012733479.1\|2411954_2412386_-	hypothetical protein	NA	NA	NA	NA
WP_012733478.1\|2412523_2413969_-	hypothetical protein	NA	NA	NA	NA
WP_085962356.1\|2414043_2414860_+\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_012733477.1\|2415243_2416389_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_085962364.1\|2416950_2418154_+\|transposase	IS3-like element ISBugl1 family transposase	A0A1B0Z042	Pseudomonas_phage	1.3e-97	62.4
WP_017432860.1\|2418751_2418889_+	hypothetical protein	NA	NA	NA	NA
WP_039200734.1\|2419007_2420093_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.1e-41	35.6
WP_012733474.1\|2420161_2421142_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	8.1e-13	29.7
WP_012733473.1\|2421249_2422941_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_042967738.1\|2422937_2423576_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.1e-34	42.1
WP_012733471.1\|2423697_2424435_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.3e-10	33.6
WP_017432861.1\|2425020_2425929_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012733469.1\|2426024_2426600_+	DMT family transporter	NA	NA	NA	NA
WP_012733468.1\|2426639_2427779_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_045678770.1\|2427775_2430868_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	5.9e-49	23.5
WP_127913911.1\|2430927_2432460_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_035981433.1\|2432872_2433097_-	hypothetical protein	NA	NA	NA	NA
WP_012733464.1\|2433265_2434096_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_012733462.1\|2435245_2436439_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012733461.1\|2436435_2437230_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_012733460.1\|2437226_2438129_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_012733459.1\|2438151_2439681_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012733458.1\|2439764_2441459_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	2.7e-56	32.8
WP_012733457.1\|2441544_2442684_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_012733456.1\|2442808_2443903_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_012733455.1\|2444074_2444371_-	hypothetical protein	NA	NA	NA	NA
WP_127913865.1\|2444816_2445245_-	hypothetical protein	NA	NA	NA	NA
WP_012733454.1\|2445243_2446545_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.3e-63	37.1
WP_012733453.1\|2446640_2447252_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_012733452.1\|2447265_2447553_-	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_012733451.1\|2447991_2449977_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012733450.1\|2450044_2450356_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_012733449.1\|2450464_2451736_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_012733448.1\|2452090_2452381_+	DUF3331 domain-containing protein	NA	NA	NA	NA
WP_012733447.1\|2452828_2453134_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_039200730.1\|2453855_2454368_-	thioesterase family protein	NA	NA	NA	NA
WP_035984700.1\|2454370_2455336_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_012733444.1\|2455414_2456344_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_012733443.1\|2456422_2457367_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012733442.1\|2457717_2458008_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_039204057.1\|2458097_2459042_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_012733440.1\|2459130_2460276_-	porin	NA	NA	NA	NA
WP_173941260.1\|2460345_2460819_+	hypothetical protein	NA	NA	NA	NA
WP_085962362.1\|2461673_2462491_-\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009433

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009433_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009433_1

69862-69946

Orphan

Consensus_repeat	Method
CGAAGTTTCAACGTTGAAACTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009433_1

>merge|NZ_CP009433|1|69862-69946|CRISPRCasFinder
CGAAGTTTCAACGTTGAAACTTCGCCCACCACCCTGGCTCGGACGCAAGTAGAGCACAGCAACAAGTTTCAACGTTGAAACTTCG

>NZ_CP009433|1|1|69862-69946|CRISPRCasFinder
CGAAGTTTCAACGTTGAAACTTCG	CCCACCACCCTGGCTCGGACGCAAGTAGAGCACAGCA
ACAAGTTTCAACGTTGAAACTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009433.1\|WP_012732710.1\|65462_65804_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_017432351.1\|70608_71646_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|224392
NZ_CP009433.1\|WP_127913917.1\|68680_69283_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_017432348.1\|68010_68196_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_017432354.1\|75880_77218_-\|DUF1173-domain-containing-protein	unknown	unknown	gnl\|CDD\|369028
NZ_CP009433.1\|WP_045678689.1\|78318_83034_-\|YadA-like-family-protein	unknown	unknown	gnl\|CDD\|240612
NZ_CP009433.1\|WP_080942733.1\|83158_83782_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_012732807.1\|77648_78302_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_012732894.1\|67534_67804_-\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|370057
NZ_CP009433.1\|WP_085962419.1\|62797_63615_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP009433.1\|WP_124837682.1\|66102_66345_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_127913916.1\|65860_66106_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_080763590.1\|71730_73011_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP009433.1\|WP_017432350.1\|69961_70606_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NZ_CP009433.1\|WP_012732806.1\|77232_77637_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_017432353.1\|74563_75463_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP009433.1\|WP_017432347.1\|66358_66643_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_012735271.1\|83778_84096_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009433.1\|WP_012732711.1\|63624_65460_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|372139
NZ_CP009433.1\|WP_012732893.1\|67049_67538_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP009433.1\|WP_012732894.1\|67534_67804_-\|DUF1778-domain-containing-protein	gnl\|CDD\|370057	pfam08681, DUF1778, Protein of unknown function (DUF1778). This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.	2.08591e-18
NZ_CP009433.1\|WP_080763590.1\|71730_73011_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	5.60415e-23
NZ_CP009433.1\|WP_085962419.1\|62797_63615_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.37338e-26
NZ_CP009433.1\|WP_012732893.1\|67049_67538_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.8598e-10
NZ_CP009433.1\|WP_017432350.1\|69961_70606_+\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	2.77028e-33
NZ_CP009433.1\|WP_017432351.1\|70608_71646_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|224392	COG1475, Spo0J, Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription].	6.20331e-18
NZ_CP009433.1\|WP_012732711.1\|63624_65460_-\|site-specific-integrase	gnl\|CDD\|372139	pfam12482, DUF3701, Phage integrase protein. This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with pfam00589.	9.26785e-23
NZ_CP009433.1\|WP_017432354.1\|75880_77218_-\|DUF1173-domain-containing-protein	gnl\|CDD\|369028	pfam06666, DUF1173, Protein of unknown function (DUF1173). This family contains a group of hypothetical bacterial proteins that contain three conserved cysteine residues towards the N-terminal. The function of these proteins is unknown.	0
NZ_CP009433.1\|WP_045678689.1\|78318_83034_-\|YadA-like-family-protein	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	1.62629e-11

>NZ_CP009433.1|WP_127913917.1|68680_69283_+|hypothetical-protein
MTIKTHPRESTTMPNQQPSAGSLAEIRRTLIPFYQQALYAGLRALELDQKFDVLERIDIRVEGIAEPVHSTIMGAFTQSTSSIAAVYSRLLLEFLGLKTGGSSSALVSTGKRRPGDIGVEMFCDRHGVAVPKIDPSIVAIFANSNNVAKAWIATCDFAGQRLAHITTDWRLNGADVRPMLALTFETLPIVLQKYFFDLLP
>NZ_CP009433.1|WP_017432348.1|68010_68196_-|hypothetical-protein
MLECLLRLLTAVDRLIVTADPHPAGARRVAQLARLGCGGVGLAVLLAALELGRSALALAGG
>NZ_CP009433.1|WP_012732894.1|67534_67804_-|DUF1778-domain-containing-protein
MATTRFEARVEADVLSVIRRAAEIQGRTMSDFVVSAAREAAQRAISEAEVIRLSVADSERFAAAILSPAKPTEALQRALDRHNQLLRNE
>NZ_CP009433.1|WP_012732893.1|67049_67538_-|GNAT-family-N-acetyltransferase
MTGPQLTVAALDAAHDRTGFECGTPALDRYLRETVTQDVRRRVAACFVMLDGHVVVGYYTLSAASIALAELPQEMIRKLPRYPAVPAIRMGRLAVDARYRGRGLGAALLVNALRRAARSEIPAVALTVDAKDEGAAAFYGHFGFQALTSDPLALFLPLATVR
>NZ_CP009433.1|WP_017432347.1|66358_66643_-|hypothetical-protein
MPHRQMMTARHLTDRTESCIRECLADAERSSHPNRKQMYQDFANGAFVLWNRLMQDLADPADPLATAEFEADQARLNALIGDAPPPREAAPSGN
>NZ_CP009433.1|WP_124837682.1|66102_66345_-|hypothetical-protein
MNSGLTYPQLTTHTLNEVLRHLVDAEQGGIGGAQVAEGRARGAFDLWCSLVQVLLAAKDPAASNYRYDEARLRHMLALPR
>NZ_CP009433.1|WP_127913916.1|65860_66106_-|hypothetical-protein
MSAVPSGHARDRRSRFGLRAVVAIQRRFKRQLVVLLLLLVSGCTASARPAPLADESPERIARDAARRAAAGPVQSVSDYLT
>NZ_CP009433.1|WP_012732710.1|65462_65804_-|hypothetical-protein
MNRPTITSSTSARRVDGIVFEIALAIGLRVEVIGVPFTYRDRTFAVHRSSRSRSITSVEYSVSDVETGRSIPQVAAATIDQAREAAILALDAVAEADWCKQFAAPARRKTARA
>NZ_CP009433.1|WP_012732711.1|63624_65460_-|site-specific-integrase
MANRPQQLELPPPRTYSRTEFTALRARVKGLPIATIARLYFDPEEHEVLDVERLLRTMRDDLVSIALREGSSVLVEHLQASIRKYGEPRLTPVSLQMIELAAGSWAKAAPAANHAVARWFRPLVAQRLAEVDVATVGELVAYCNRRGGAWWRSVPRIGVGRARALVAWLRRHAETIGQTVDADVDGVDPLLAAPETRVALRRGQLVPIHRLVVPHELAGARGANRAPAFPYISAAHDLDAVFAYLHRYDGQAATQRAYWRELERFVLWCVLERGRPMSSILVDDCEAYKAFLANPSDTFRGPPASRASGRWRPFALTPLSLDSQRYAVRTLRAAFDWLVKVRYLAGNPWVAVTDPKPVKRATKLQVQRALPIDVWSRVRAELAERAEGLGPQGPDWRVARALVLLMGDAGLRIEEAVTVERGGLQWWPAEDDTPATWMLRLIGKGSKERIVPLTEDTVQALREHWQDRGLDLDAPGAAADGVPLVAPTVVPPTPASREKFGVTETGEVTRVAGYTPRAARRVVTRALRRLLEQLPDWEESARRQLAATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLAARRAK
>NZ_CP009433.1|WP_085962419.1|62797_63615_+|IS5-family-transposase
MEAPIIDDELWILIEPLLPPAKLRAKSDPGRPRVSDRAALNGILFVFKTGIRWNHLPTRLGFGSGATCWRRLSDWQKAGVWDQLHELLLDKLRAAGQIDLSYAAVDSSSVRAVGAGGKTGPNPTDRARPGSKHHVLVDANGVPLVAILTGANTNDVTQLLPLVDAIPPIRGVRGRPLQKPGVVYADRGYDSTRHRRALRERGIKPVIAKRRTEHGSGLGKYRWVVERTHSWLHNFRRLRTRFERSAYIHEAFLKLGCSLICWNIFRRAVQGF
>NZ_CP009433.1|WP_017432350.1|69961_70606_+|AAA-family-ATPase
MAARIIVVYNQKGGSGKTTTSTNLAGGLGLRGRKTLLVDYDEQGTASIMVANAPDDSPFPASVVNLSRNPKELKRFRDDYEFIVVDCPPAIKSDAPSIALLVADLGIIPVQPSGGNLWAVAEAKKLGVKAQDYNPDLKLRTLANSNRNTSVAKQIFAALAEDEEVPMLRTAIGQRTAYAEAELMGTTVLQIKEAKEAQAEFNALVDEILELVDD
>NZ_CP009433.1|WP_017432351.1|70608_71646_+|ParB/RepB/Spo0J-family-partition-protein
MATKKSFTDHIKKGQLLDEALRSSGPKEGIDRFEIMEQALAGRGSLLHAPKETDVSSRADVLVREGKASVLVTTWPIDKIDDNPLNSRHIYDEAKVQARASSIAKDGQFQPALVARHPTNPERVILIDGQYRKRASRILGKKEMEVKILDGLTPIDFWRLARSSNAEREQESALDVAMSFRALLDQGHARTAEEIAGMIGESKGVVSKYLAMLSLPEQTRDIIAAHPAIFSVNISYELALYRKVTDDSRTDALAQRILDDGLSIRKIEAIRKAAEVGKERRRNPTSLQFKFRGADGTEIGTIKEWADGRIQVDLQLGNDVVRFREALTTMLAEGGAQSIGEKSNE
>NZ_CP009433.1|WP_080763590.1|71730_73011_-|replication-initiation-protein
MEPTQIALFQLNDLPEPFRKAVPAVHIAPKSGPISLQQAKMWNALIKNAIGQDKDGERVWFEYPIGDLIADVGLNSKNRDYVKATINSLLGFVVNWDYLSGKPEWNASSLIAGAKLSAGILRYQFSDNIRELLMNPRIYASIDMRIAREFKRGHALTLWENVVRYEGVGRTPRLSVETIRDLLLGVDWPQGSYAQYKIFKSRILLPALEEINRIADHQIAMHEFKSGRTITEVQFVIEPKRKQEVASEDDLNLLTAVTRFSVPLTEARKLLAQYGPEAIRQAVGYTDARLKKKNAQPIENVGAYFRKSLAGGYQAEPDRSKPLKQVNGLEPASANTEDVLLAQLAAERANEARRYFDELEAAEQSECMARYNEQQPATPLKLVANRKPKKAAESAFFQWLSVDVWGEPTDRDLLNFVISRQVQATR
>NZ_CP009433.1|WP_017432353.1|74563_75463_-|Crp/Fnr-family-transcriptional-regulator
MTRSPFGLQPANPAALPCSATDDGGDVPPAAIAHARSRAAALSERVWPADIPCPAPANSPRLLRELKLRLGRYLDTPQAWLPALNAANGSRRQQRSERRVACVQLVRALIKFCDLSTLRVAVPSKGAWIDFTLPYLAEQAGLPVRRAERALRDLVRARLVKSRPQCELQVDEQGPRYRGLAAIRYLSPALFEQFGLGKWLRHERTRAHLRAQRRRDAARKRERKHGAAAGAGQLLEQLTTKLAAAQARAKTRDDHGGVDRRAEFERAVMIRAGQLKETHPDWDRDQCFRVARSQLSPPG
>NZ_CP009433.1|WP_017432354.1|75880_77218_-|DUF1173-domain-containing-protein
MQRYELDGEEFDGASNSFLARLPAAHDEKKRPLCLCQSPGIPMYIARFEDRFIVKRMPGTARQHSMDPMCDSYEAPAGLSGYGDVDGSAIVEDPDSGLVTLKFGFPLAKGPSRQMPEPSGAEPESVKADGKKLTLRGLLHYLWEQACLNRWTPAMAGKRGWGLVRRELLKAAAGKQSKKFDLTDLLYIPETFVLDQEDQIEQRRAAHLARISQSEGGKPHYILVIGELKEIATARFGFKLVIKHLPRFGLMLDEATKKRIEKVFKAELEMSASTEGTHLIVIATASVSASGTATVHEVSMMLTTENWIPFENLTEHTLLKSLAKRRFLKCLRYNQAATTPIANVLLTDAEKETALFVVPADASTSFESRLDALIKESDVDTWIWRLSAGPMPALPRTAYEERAAAAARRNRAPQTLPPPDRQPGPPRDAPAGPDFDDADSPGNWL
>NZ_CP009433.1|WP_012732806.1|77232_77637_-|hypothetical-protein
MTRNQHDPRNSGPASMRRATKSPRANLTVAEVAATMRPGVTYTTSRLAGKLGVPVSAMRHLLSCDVALARFDLHSGPTGRAYSLAGTRRAPDAHVDTRVRPDLSSNLTGYMRGLDTHRALAMTTRGSPTPRTAR
>NZ_CP009433.1|WP_012732807.1|77648_78302_-|hypothetical-protein
MHLTRFSLSAGGVTAAPPRNGVPIAFARALQARVDYATAMFATDEGVARQALLKRAREEAADLAWDLVMIDDSDLSCPHLFADVPTLRGAFEASLNWAQLERAELDEELASVQAEMDAEKAEAERRATIEAAIAAGDWTALHLPTPEAFVRALAAGESVEACGHTFDFVHDEGLWATNPYGVDAYVGPDIPTTQQASRLLRGLARGTTYGAVPPDSE
>NZ_CP009433.1|WP_045678689.1|78318_83034_-|YadA-like-family-protein
MKRMKRPEKAGVSIAIAVAITAYAGQCYAQATGKDAIANGTGATAPGDNSIAVGTNADSIGARAAALGDGATATGDDSIALGTSASSQLNAVAIGNTSNAASNAVAVGPTATAAATNSVAIGNAAQASVDPNNGGSVSDIAIGNGASAVALGSSAGGAVAMGRQASASAANSLALGSGAAASSTNAVAIGTNSAASENNAIAMGLNAHATAANGVAIGNSAVATNSADVSVGSGAATTTTTPTSSINIAGQSYPVAGSKPVAAFSIGSTRYPRQLQNVAAGAVSATSLDAVNGSELYQATQAIGTLSTSTAQAVTSLSTGVATNAADISSLSTSVSTGQTSTNSNVSALQTGLATGTIGVVQQAGGASTGTITVGAGTGGTAVDVTGTAGARQIQGVAAGTSATDAVNLQQLQGAEAQTAAVGASTVAYDDASHTHVTLGTAGTPATLTNLADGALSASSTDAVNGRQLNAAKQDISANTNAIGALSTSTQTSISTLSTGLTTNTSAIASLSTSTGQSVSTLTSGLASTNSNVSALQTGLSTGTIGVVQQAGGASTGTITVGAGTGGTAVNVTGTAGARQIRGVAAGTSATDAVNLQQLQGAEAQTTAVGASTVAYDDASHTHVTLGTAGTPATLTNLADGALSASSTDAVNGRQLNAAKQDISANTNAIGALSTSTQTSISTLSTGLTTNTSAIASLSTSTGQSVSTLTSGLASTNSNVSALQTGLSTGTIGVVQQAGGASTGTITVGAGTGGTAVNVTGTAGARQIQGVAAGTSATDAVNLQQLQGAEAQTTAVGASTVAYDDASHTHVTLGTAGTPATLTNLADGALSTSSTDAVNGRQLNAAKQDISANTNAIGALSTSTQTSISTLSTGLTTNTSAIASLSTGTSQSVSALTTGLASTNSNVSALQTGLSTGTIGVVQQAGGASTSTITVGAGTGGTAVDVTGLAGARQIKGVAAGTSATDAVNLQQVQSMTSAMGSAAGAVGYVDASHSRVVLGAVGTPVTVTNVADGALSSGSTDAVSGRQLYAANQAIAANATAIGNLSTATAATLSSLTNSTAQSLNSLSTDVSSNQTTLSALQAGLAAGTVGLVRQASGLATGTIAIGAGTGGPAINVAGTAGARQLKGVAAGTGATDAVNLQQLDDALSAGGPAGAGSIGYDDASRTRVTFGGAGTPVSLTNIADAALSPASTDAVTGRQLFATNQSVSALAGQLAAGTVGLVQQVGGTTAALAIGAGTAGSSIDVAGTAGPRRITGVAAGVDVTDAANVGQLQQLAGAVGTLASGALAYDGPTKLSVTLGGLGAGTAVTIHNLAAGALSAGSLDAVNGGQLFATNQILAANTAAITSLSSQLGAILPSSFSQTNAIAAPASLKYAAFNSAGAGAVATGTDAVAIGATAVASGERAVSLGAGAASAGTGSVALGDSASAKGANSVALGAGSVADQDNAVSIGNAATGMTRILSNVSPGVAPTDAVNVQQLNDSVTGLANQIEHDRRDANGGIAAAVAMASLPQAPAPGKTMVAIGGGTYAGQSAMAVGVSTYAGRWVLKASGSTNSRGTVAAGFGAGYTW
>NZ_CP009433.1|WP_080942733.1|83158_83782_-|hypothetical-protein
MKSALNRLIFAWRAAHGRDATRALALARREAAASIRWPDKTVFLVNPDPSVRDRAAVVILVIVVGIVLVQAISNSPLPRYLDDHAARPSMEAAMRAGNAGAATWLGARFEKDYPGLLASQADAGEATAMYLVGRALMRDPTASRAYPRSVGMTRGQRETIGWDFVRRAAAAGNEAALLLLIDRGQSLQADASVSPPGAGVRTPAGKN
>NZ_CP009433.1|WP_012735271.1|83778_84096_-|hypothetical-protein
MNRPLSHFARALEARVNYAYATCTTDRGSAAWHTYLITAREHAMALGRMRALDPADLCECPPLLSDVPMLRTAFDQAVAGVRQPCPDVAPAAANDPTPHALESSR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009433_1	1.1\|69886\|37\|NZ_CP009433\|CRISPRCasFinder	69886-69922	37	NZ_CP009433	Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_1, complete sequence	69886-69922	0	1.0
NZ_CP009433_1	1.1\|69886\|37\|NZ_CP009433\|CRISPRCasFinder	69886-69922	37	NZ_CP035903	Burkholderia glumae strain 257sh-1 plasmid plas2, complete sequence	55857-55893	0	1.0

1. spacer 1.1|69886|37|NZ_CP009433|CRISPRCasFinder matches to NZ_CP009433 (Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_1, complete sequence) position: , mismatch: 0, identity: 1.0

cccaccaccctggctcggacgcaagtagagcacagca	CRISPR spacer
cccaccaccctggctcggacgcaagtagagcacagca	Protospacer
*************************************

2. spacer 1.1|69886|37|NZ_CP009433|CRISPRCasFinder matches to NZ_CP035903 (Burkholderia glumae strain 257sh-1 plasmid plas2, complete sequence) position: , mismatch: 0, identity: 1.0

cccaccaccctggctcggacgcaagtagagcacagca	CRISPR spacer
cccaccaccctggctcggacgcaagtagagcacagca	Protospacer
*************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19231 : 65460

Acidithiobacillus_phage(20.0%)

integrase,transposase

attL 34400:34415|attR 67453:67468

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012732738.1\|19231_20251_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_017924734.1\|20540_20678_-	hypothetical protein	NA	NA	NA	NA
WP_017433187.1\|20726_22277_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.3e-157	55.0
WP_012732736.1\|22292_23042_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.8e-81	61.2
WP_012732735.1\|24326_24782_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012732734.1\|24781_25135_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_012732733.1\|25234_26821_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	9.6e-64	34.1
WP_158335141.1\|27438_27615_-	hypothetical protein	NA	NA	NA	NA
WP_012732732.1\|27623_32066_-	ATPase AAA	A0A2H4PQV1	Staphylococcus_phage	8.8e-22	27.5
WP_017432396.1\|32415_32883_-	hypothetical protein	NA	NA	NA	NA
WP_012732731.1\|33000_33960_-	DUF4268 domain-containing protein	NA	NA	NA	NA
WP_017432398.1\|34117_34345_-	hypothetical protein	NA	NA	NA	NA
WP_162486894.1\|34344_34542_-	hypothetical protein	NA	NA	NA	NA
34400:34415	attL	NA	NA	NA	NA
WP_011694493.1\|34679_34946_-\|transposase	transposase	NA	NA	NA	NA
WP_127913915.1\|35073_36378_-	hypothetical protein	NA	NA	NA	NA
WP_017432401.1\|36380_37238_-	hypothetical protein	NA	NA	NA	NA
WP_017432402.1\|37829_38165_-	hypothetical protein	NA	NA	NA	NA
WP_012732730.1\|38461_39481_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_085962346.1\|39605_40423_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	4.5e-25	34.6
WP_174484815.1\|40454_42068_-	hypothetical protein	NA	NA	NA	NA
WP_012732728.1\|42052_42556_-	hypothetical protein	NA	NA	NA	NA
WP_017432285.1\|42552_43599_-	hypothetical protein	NA	NA	NA	NA
WP_012732726.1\|43793_45224_-\|transposase	ISKra4-like element ISBugl3 family transposase	NA	NA	NA	NA
WP_012732724.1\|47142_48726_-	CHASE3 domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-11	37.6
WP_017432531.1\|49208_49553_+	hypothetical protein	NA	NA	NA	NA
WP_012732723.1\|49592_51290_+	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-12	43.0
WP_012732721.1\|53310_54816_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-16	30.9
WP_012732720.1\|54808_55606_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	4.4e-33	37.7
WP_012732719.1\|56274_56685_+	manganese catalase family protein	NA	NA	NA	NA
WP_012732718.1\|57055_58408_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012732717.1\|58777_59506_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.3e-20	32.4
WP_012732716.1\|59551_60001_-	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_102952636.1\|60146_60632_-	hypothetical protein	NA	NA	NA	NA
WP_012732713.1\|62197_62623_-	hypothetical protein	NA	NA	NA	NA
WP_085962419.1\|62797_63614_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012732711.1\|63624_65460_-\|integrase	site-specific integrase	NA	NA	NA	NA
67453:67468	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP009433.1|WP_045678704.1|160946_161645_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP009433.1|WP_045678704.1|160946_161645_+|hypothetical-protein

160946_161645_+

232 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|79	0.4933920704845815	0.9741379310344828	0.9868421052631579

4. NZ_CP009432

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9309

Bacillus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012734100.1\|2698_3334_+	FMN reductase	NA	NA	NA	NA
WP_085962362.1\|3529_4346_+\|transposase	IS5-like element ISBugl2 family transposase	NA	NA	NA	NA
WP_012734102.1\|7536_9309_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	5.4e-07	23.7

DBSCAN-SWA_2

25791 : 98535

Leptospira_phage(23.53%)

transposase,integrase

attL 52182:52198|attR 76885:76901

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012732705.1\|25791_27030_-	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	1.4e-30	29.3
WP_035977131.1\|28319_31301_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.1e-80	26.5
WP_012732800.1\|31590_31881_+	DUF427 domain-containing protein	NA	NA	NA	NA
WP_102952662.1\|31939_32743_-	DUF547 domain-containing protein	NA	NA	NA	NA
WP_102952661.1\|32739_34137_-	radical SAM protein	NA	NA	NA	NA
WP_012732797.1\|34315_35143_-	hypothetical protein	NA	NA	NA	NA
WP_012732796.1\|35238_36258_-	hypothetical protein	NA	NA	NA	NA
WP_012732795.1\|36269_37253_-	arsenosugar biosynthesis radical SAM protein ArsS	NA	NA	NA	NA
WP_012732794.1\|37469_38426_+	hypothetical protein	NA	NA	NA	NA
WP_012732793.1\|38579_38966_+	thioredoxin family protein	A0A2R3ZRK1	Marseillevirus	4.9e-06	35.0
WP_045678673.1\|38947_39694_+	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_012732791.1\|39739_40366_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012732790.1\|40359_40569_+	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_012732789.1\|40633_42007_+	MFS transporter	NA	NA	NA	NA
WP_012732788.1\|42121_42391_+	hypothetical protein	NA	NA	NA	NA
WP_012732787.1\|42491_43214_+	hypothetical protein	NA	NA	NA	NA
WP_012732786.1\|43210_44092_+	S-methyl-5'-thioadenosine phosphorylase	NA	NA	NA	NA
WP_017432756.1\|44199_44901_+	TIGR04283 family arsenosugar biosynthesis glycosyltransferase	NA	NA	NA	NA
WP_012732784.1\|44909_45566_+	TIGR04282 family arsenosugar biosynthesis glycosyltransferase	NA	NA	NA	NA
WP_012732783.1\|45562_46654_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_017432758.1\|46654_47014_-	hypothetical protein	NA	NA	NA	NA
WP_158335138.1\|47089_47290_-	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_012732781.1\|47364_49575_-	bifunctional TVP38/TMEM64 family protein/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.7e-37	27.3
WP_012732780.1\|49576_50044_-	DoxX family protein	NA	NA	NA	NA
WP_012732779.1\|50070_50847_-	putative DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012732778.1\|50830_51733_-	DUF692 domain-containing protein	NA	NA	NA	NA
WP_012732777.1\|51740_51992_-	DUF2282 domain-containing protein	NA	NA	NA	NA
52182:52198	attL	NA	NA	NA	NA
WP_012732776.1\|52259_52952_+	haloacid dehalogenase type II	NA	NA	NA	NA
WP_012732775.1\|53053_53626_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012732774.1\|53717_54299_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_102952665.1\|54372_54966_-	hypothetical protein	NA	NA	NA	NA
WP_012732772.1\|55129_55894_-	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_012732771.1\|55943_56399_-	hypothetical protein	NA	NA	NA	NA
WP_012732770.1\|56776_57346_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012732769.1\|57348_58005_+	DUF1109 family protein	NA	NA	NA	NA
WP_012732768.1\|58116_58437_+	DUF2282 domain-containing protein	NA	NA	NA	NA
WP_012732767.1\|58452_59346_+	DUF692 domain-containing protein	NA	NA	NA	NA
WP_012732766.1\|59329_60115_+	putative DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012732765.1\|60140_60611_+	DoxX family protein	NA	NA	NA	NA
WP_012732764.1\|60718_61159_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_012732763.1\|61443_61854_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_012732762.1\|62011_62434_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_012732760.1\|64215_65907_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_088499482.1\|66014_67484_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	6.6e-67	33.9
WP_012732753.1\|67515_67866_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.1e-16	39.4
WP_012734051.1\|67841_68318_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_045678674.1\|68650_69019_-	hypothetical protein	NA	NA	NA	NA
WP_043308431.1\|69149_69929_-	hypothetical protein	NA	NA	NA	NA
WP_158335139.1\|70192_70798_-	hypothetical protein	E5E3S8	Burkholderia_phage	4.2e-20	34.7
WP_012734095.1\|71144_71450_-	helix-turn-helix transcriptional regulator	E5E3S9	Burkholderia_phage	1.1e-16	46.5
WP_042968082.1\|72330_72540_-	hypothetical protein	NA	NA	NA	NA
WP_127913983.1\|73176_73488_-	hypothetical protein	NA	NA	NA	NA
WP_012734094.1\|73614_75456_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012734093.1\|75452_75833_-	hypothetical protein	NA	NA	NA	NA
WP_017433735.1\|75867_76185_-	hypothetical protein	NA	NA	NA	NA
WP_039203971.1\|76247_76658_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_012734091.1\|76648_76903_-	antitoxin	NA	NA	NA	NA
76885:76901	attR	NA	NA	NA	NA
WP_085962428.1\|77953_79190_+\|transposase	IS3-like element IS1416 family transposase	Q8W6R2	Burkholderia_virus	1.9e-155	94.7
WP_012734082.1\|79300_81148_-	peptidase C11	NA	NA	NA	NA
WP_124837819.1\|81243_82731_-	hypothetical protein	NA	NA	NA	NA
WP_085962370.1\|83429_84234_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.1e-28	35.1
WP_017423070.1\|85290_86028_+	response regulator	NA	NA	NA	NA
WP_012734079.1\|86247_87027_+	response regulator	W8CYM9	Bacillus_phage	4.8e-16	33.1
WP_158335140.1\|87176_89711_+	response regulator	Q6XLV6	Feldmannia_irregularis_virus	4.9e-17	25.4
WP_012732752.1\|90101_91658_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.1e-67	34.0
WP_012732753.1\|91689_92040_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.1e-16	39.4
WP_012734051.1\|92015_92492_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_017433349.1\|92555_93494_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	9.2e-22	32.3
WP_012734052.1\|94363_94762_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012734053.1\|94843_95785_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012732871.1\|96415_97282_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.8e-49	44.1
WP_017432522.1\|97278_98535_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	7.7e-48	33.0

DBSCAN-SWA_3

103113 : 139039

Mycobacterium_phage(22.22%)

transposase,integrase

attL 103020:103079|attR 130719:132018

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
103020:103079	attL	NA	NA	NA	NA
WP_085962358.1\|103113_104317_+\|transposase	IS3-like element IS1417 family transposase	A0A1B0Z042	Pseudomonas_phage	1.0e-97	63.1
WP_088499481.1\|104426_105663_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	5.3e-102	63.6
WP_012734061.1\|106062_107109_-\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	1.7e-149	73.9
WP_124837731.1\|107821_108016_-	hypothetical protein	NA	NA	NA	NA
WP_127913981.1\|108085_108388_-	hypothetical protein	NA	NA	NA	NA
WP_012734062.1\|108451_108694_-	hypothetical protein	NA	NA	NA	NA
WP_017433216.1\|108706_108970_-	hypothetical protein	NA	NA	NA	NA
WP_012734063.1\|108981_109302_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_012734064.1\|109295_109544_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012734065.1\|109655_110327_-\|integrase	site-specific integrase	A0A1W6DWU1	Sphingobium_phage	1.1e-11	30.0
WP_017425259.1\|110451_110742_-	hypothetical protein	NA	NA	NA	NA
WP_102952664.1\|110781_112335_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1G8E2	Mycobacterium_phage	3.6e-07	34.4
WP_012734068.1\|113331_114015_+	adenylyl-sulfate kinase	A0A1B0XTK9	Freshwater_phage	3.3e-05	32.3
WP_035976812.1\|114087_114903_+	sulfotransferase	NA	NA	NA	NA
WP_012734070.1\|115434_116730_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	6.5e-18	30.4
WP_045678676.1\|117088_118108_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_085962447.1\|118310_119127_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.3e-24	34.6
WP_012734073.1\|119472_120024_+	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_012732724.1\|121541_123125_-	CHASE3 domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-11	37.6
WP_017432531.1\|123607_123952_+	hypothetical protein	NA	NA	NA	NA
WP_012732723.1\|123991_125689_+	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-12	43.0
WP_012734074.1\|125865_127590_+	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.1e-10	51.9
WP_080569430.1\|127808_128297_+	hypothetical protein	NA	NA	NA	NA
WP_085962370.1\|128667_129472_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.1e-28	35.1
WP_085962358.1\|129479_130684_-\|transposase	IS3-like element IS1417 family transposase	A0A1B0Z042	Pseudomonas_phage	1.0e-97	63.1
WP_085962346.1\|131343_132160_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	4.5e-25	34.6
130719:132018	attR	NA	NA	NA	NA
WP_012734076.1\|132978_134538_+	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	5.1e-41	47.6
WP_045678678.1\|135765_136812_-\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	3.8e-149	74.2
WP_012732753.1\|137100_137451_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.1e-16	39.4
WP_012732752.1\|137482_139039_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.1e-67	34.0

DBSCAN-SWA_4

142895 : 143942

Mannheimia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012734099.1\|142895_143942_+\|transposase	IS481-like element IS1419 family transposase	A0A0M3LS26	Mannheimia_phage	3.8e-149	74.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009435

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP009433

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

4. NZ_CP009432

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection