CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009907	Lactobacillus helveticus strain KLDS1.8701 chromosome, complete genome	4 crisprs	cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,WYL,RT	0	12	15	0
NZ_CP009908	Lactobacillus helveticus strain KLDS1.8701 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009907_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009907_1

735863-736129

TypeV

Consensus_repeat	Method
GTTTTCTCCACGTAAGTGGAGGT	CRISPRCasFinder

4 spacers

cas14j

The CRISPR arrays of NZ_CP009907_1

>merge|NZ_CP009907|1|735863-736129|CRISPRCasFinder
GTTTTCTCCACGTAAGTGGAGGTGATCCCCCAAAAGCCGTAGCTGAAAAGGCTAAATGAAAGTTTTCTCCACGTAAGTGGAGGTGATCCCTACTGATTATTTGAACGGCTTAACCGATGATCGTTTTCTCCACGTAAGTGGAGGTGATCCCGTACTGTTACTGACGTGTTTAATGATAATGCTGTTTTCTCCACGTAAGTGGAGGTGATCCTAGGGTATAGTCTAAATCCCCAACCATTTTTGGGTTTTCTCCACGTAAGTGGAGGT

>NZ_CP009907|1|1|735863-736129|CRISPRCasFinder
GTTTTCTCCACGTAAGTGGAGGT	GATCCCCCAAAAGCCGTAGCTGAAAAGGCTAAATGAAA
GTTTTCTCCACGTAAGTGGAGGT	GATCCCTACTGATTATTTGAACGGCTTAACCGATGATC
GTTTTCTCCACGTAAGTGGAGGT	GATCCCGTACTGTTACTGACGTGTTTAATGATAATGCT
GTTTTCTCCACGTAAGTGGAGGT	GATCCTAGGGTATAGTCTAAATCCCCAACCATTTTTGG
GTTTTCTCCACGTAAGTGGAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009907.1\|WP_052540833.1\|750409_750919_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP009907.1\|WP_155382023.1\|724392_724557_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226648
NZ_CP009907.1\|WP_003627167.1\|731821_732703_+\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|366488
NZ_CP009907.1\|WP_052540838.1\|751359_751818_-\|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379534
NZ_CP009907.1\|WP_052540801.1\|727480_728995_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341067
NZ_CP009907.1\|WP_052540807.1\|738697_740482_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533
NZ_CP009907.1\|WP_052540803.1\|730574_731432_+\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
NZ_CP009907.1\|WP_080890061.1\|724510_724903_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226648
NZ_CP009907.1\|WP_003627177.1\|725046_726360_+\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NZ_CP009907.1\|WP_023191603.1\|749261_749636_+\|DUF2513-domain-containing-protein	unknown	unknown	gnl\|CDD\|378481
NZ_CP009907.1\|WP_052540805.1\|736969_738376_+\|ISLre2-family-transposase	unknown	unknown	gnl\|CDD\|284250
NZ_CP009907.1\|WP_172644359.1\|723010_724240_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP009907.1\|WP_052540810.1\|740492_742796_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226581
NZ_CP009907.1\|WP_012212140.1\|731489_731804_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_CP009907.1\|WP_052540813.1\|742809_744288_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_CP009907.1\|WP_003627174.1\|726414_727392_-\|SLAP-domain-containing-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_052540829.1\|749833_750070_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_052540836.1\|750915_751173_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_052540826.1\|746044_746326_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_003627170.1\|729132_730110_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375122

Protein	Function_ID	Function_description	E-value
NZ_CP009907.1\|WP_052540833.1\|750409_750919_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	0.000182721
NZ_CP009907.1\|WP_155382023.1\|724392_724557_+\|hypothetical-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	8.30843e-09
NZ_CP009907.1\|WP_003627167.1\|731821_732703_+\|SPFH-domain-containing-protein	gnl\|CDD\|366488	pfam01145, Band_7, SPFH domain / Band 7 family. This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals.	2.82029e-35
NZ_CP009907.1\|WP_052540838.1\|751359_751818_-\|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	0.000241996
NZ_CP009907.1\|WP_052540801.1\|727480_728995_-\|M1-family-metallopeptidase	gnl\|CDD\|341067	cd09604, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains bacterial M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	4.50287e-112
NZ_CP009907.1\|WP_052540807.1\|738697_740482_+\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	3.60537e-39
NZ_CP009907.1\|WP_052540803.1\|730574_731432_+\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.56789e-23
NZ_CP009907.1\|WP_080890061.1\|724510_724903_+\|hypothetical-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	9.24748e-20
NZ_CP009907.1\|WP_003627177.1\|725046_726360_+\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NZ_CP009907.1\|WP_052540805.1\|736969_738376_+\|ISLre2-family-transposase	gnl\|CDD\|284250	pfam06782, UPF0236, Uncharacterized protein family (UPF0236).	2.5895e-21
NZ_CP009907.1\|WP_172644359.1\|723010_724240_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.13182e-46
NZ_CP009907.1\|WP_052540810.1\|740492_742796_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP009907.1\|WP_012212140.1\|731489_731804_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	9.23975e-10
NZ_CP009907.1\|WP_052540813.1\|742809_744288_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	2.57887e-73
NZ_CP009907.1\|WP_023191603.1\|749261_749636_+\|DUF2513-domain-containing-protein	gnl\|CDD\|378481	pfam10711, DUF2513, Hypothetical protein (DUF2513). This family is found in bacteria. The function is not known.	9.3873e-18
NZ_CP009907.1\|WP_003627170.1\|729132_730110_+\|hypothetical-protein	gnl\|CDD\|375122	pfam17312, Helveticin_J, Bacteriocin helveticin-J. Bacteriocins are biologically active proteins or protein complexes that display a bactericidal mode of action towards closely related species. Bacteriocins produced by lactic acid bacteria are grouped into different classes. Class III of bacteriocins includes large heat liable proteins. Lactobacillus helveticus 481 produces a 37-kDa bacteriocin called helveticin J which is a representative for Clas III bacteriocins.	9.20737e-130

>NZ_CP009907.1|WP_003627167.1|731821_732703_+|SPFH-domain-containing-protein
MMARIIIGIIVVLVIVYVCCGFKIVPQNNEGLVETLGKYSKTVKAGFIFVWPLFQRIRKVPLALQPLEISKYSIITKDNAEISTSLTLNYLVTDSYRYFYNNTDSVESMVQLIRGHLRDIIGRMDLNAALGSTKEINDQLFTATGDLTDIYGIKVVRVNVDELLPSAEIQHAMDKQLTADREKTAAIAKAEGEARTIGMTTKAKNDALVATAKANAEAVKTQADADAYRVQKMQEALSKAGEGYFRNQSLDSFNQLAQGPNNLIVVGKDEMTDLGKVPALRKVWDASDDKKDK
>NZ_CP009907.1|WP_012212140.1|731489_731804_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MAEKTTGLYVRMNPEKKEKAEAILKKLGLNSATAINMFYDQIILHNGIPFRVEIPNAWDNLDQMNKYEYAKLLDERLNTLNGREDLLGDIAKRLDAEKNEKKDN
>NZ_CP009907.1|WP_052540803.1|730574_731432_+|IS982-family-transposase
MNCLKLKRFSHHLQVSFKDLVIICRHWYRLYAPAEFTHRRNIDQIKTTDSLILALLIWQAKTGIESQRRFCECFNCLSHSRFNRRSRQLLQLIYQIRQEMNKKVDLNGQFLIIDSFPVPVCQPIRNYRAKIFGGYANIGYKATKKIYFYGFKIHAIVSDDGYILDYVVTKASVHDARETVELMENTHPSNYYLLGDEGYLGKELHQQLKRMGYELWTPYRKNMTGAKKHNDHQLMAIRRTIESDFSLLIYYNAENNRARSLIGFQSRLEIAILAYNLAYCLERFN
>NZ_CP009907.1|WP_003627170.1|729132_730110_+|hypothetical-protein
MVKSITPHLVYRLNGMHHVVAQVGVVNGDHVFALQLLHSAHDVLVYRKHEGLTKNIDYTDPHLVMMGFGHTQTWVPANDKDEYFVGAKPNSGNWTTQIARVKYPRLLPERYTSNTQLPRLSHLNHVTDVPYDGHDHLHRVEASVSPNGKYFMIASIWDDGSGHFGLFDLNEVNQKLNENGTKNTPITDLHCLSAFHIDNFDNPSVAPDEEMPQMIDSVQGYAIDDDKNIYISNQLSPKINHETGEVTTWSRKIVKFPWGETNSDNWQVAMVDGIDLPDRYSEMESIHVNAANDIYLTVAYHQKYIKGGEYKLRTLENQIFHITDL
>NZ_CP009907.1|WP_052540801.1|727480_728995_-|M1-family-metallopeptidase
MKRRTTLLLSSAVTIAALFSFNSKVQAAADPTIKATNYNMTVKLNTRKNQLTEKVTMHVVNNGNEPVKNLLVRNIASGVLKYDHKHFKATRNATTSVKSISSDGQKLSYTTGKDKSNLFVNKNLNAGESTDLTVNVVTGVPKRQDRFGYQNINGGKVYNLSFCFPYLSDYRNGKWNYHPYYDAGENRNSAVSNFHVSFFAPKSYKVAASGQSATKNGKTTITANNMREVAIAASNKFKVDHAYANGVRINDYYLASKNSKQYNKLALMTAQDSFHIFTKKIGKYPYKEIDITEGLLGKDTGGMEYPGLIMIDTSGFLQKKHPLDRYNELTEDVSHEVGHQWFYGTVGSDEYMEPWLDEGLTNLLENGVYDLTYTKSKAYCAKLMHSKFYTRKNVKRANKILKENANQFINKNQKASYINYPVNNPPKGVDTEDMAYELGMDFPAVLKVAMGETKFFDALHDYYQTYYLKQATTQDFLNIIRKYDNSKKVNNVINKFIDPKYLSE
>NZ_CP009907.1|WP_003627174.1|726414_727392_-|SLAP-domain-containing-protein
MTTKKLATIAAALLISVAPAAAIINQPVHTVQAATQSQKGKVTLKKSFNGTVQVFNSKGNATITTQKVNGKKMTVASTVKSGSSFKYYGKPILIQGKKVDAKTSKNYHYTTASYVNIGKKRYIKSLNVSSMDGQNVLILSSNSRIYDKNGHRTTFNGLSLIPKYMLVKTPAKTHASTKNDVFYYFSNLSGSKKRSLNTTTIKGKPFYALGNGAYIYASNVGFVNGNTLYQASGTTTATILNKIHVLNNKLKSTSKLLKIGQKVKVDATKTTGEGDEAGLYFRIAGTKGKNAQYIYWGDDSEYGMDQESTTDEFQGNFNLDNHLAN
>NZ_CP009907.1|WP_003627177.1|725046_726360_+|UDP-N-acetylmuramate--L-alanine-ligase
MLDKNKQIWFIGIKGTGMASLALLLHDLGYNVAGSDIEKYTFTQVPLEKVGIDVKNFDPANIKSNDEQVIVKGNAFKEDNPEVKACIDKGVKWQSYPDTVEEIVQMHTSIGISGTHGKTSTTSLLSHVLGEVAPTSYLIGDGRGKGVEGSRFFVYEADEYRRHFLAYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSAADQTKKALFVWGDDKRLQSLKTDIPKYTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEFEIHLFGDHSILNATAVIAVAYTEKVPMDDIREGMLTFKGAKRRFSEKDFGDIAVIDDYAHHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIPGSEVIDLDNIADLTKNKNSVIVFMGAGDIPKYEDAFEKLL
>NZ_CP009907.1|WP_080890061.1|724510_724903_+|hypothetical-protein
MVGIGTMILKIFRQCRNELQEHLERHETCSFETTLAAHAKTYMKILNYAKNKGFKLYLLYVGLSSAELAIKRVKSRVTNGGHGVTEKMIIKRYDRSLNMLYELISEFDFVSLYDNSGDSLVRIYQRIGNM
>NZ_CP009907.1|WP_155382023.1|724392_724557_+|hypothetical-protein
MPILYIFAGVNGAGKSTLTQSQFNKVITYKVNADEISRRNGWDWHDDSKNLSAM
>NZ_CP009907.1|WP_172644359.1|723010_724240_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MFDIILKRKEGTNVLKGIKLRLYPNRTQQNQLEQMFGNDRFVWNQMLAMMNERYQNNKDLPFLGKFKLNYLLKPLKKEYPFLKNSDSSSLQVVNEFLTQSWKNFFQDKSGQIGKPRFHSRKYLKKSYTGKSIIKTAGKRSLKIPKLGYVKTSKTGVLQNTKIKRYTVLLEPTGKYYLSLQVEISEPEKYSLTDKQVGIDVGVADLAILSNGLKYPSFDSSYFEKKAKVWQKKYSRRRHLVKLLVLQDRNKKVLCPRSLESFTNWQKAQKSKAKYQAKAANQRRDYLHKLTTHLVKQYDVIAIEDLKTKNLQKNHHLAKSIANASWRMFRQMLEYKCEWYGKKLIAVDPKNTSRICSKCGYNSGAKPLEIREWTCSKCQTKHDRDINAAVNILHKGSTKLNGQGLAMVTS
>NZ_CP009907.1|WP_052540805.1|736969_738376_+|ISLre2-family-transposase
MESIITDIVKIIKSENNVLAREKALMCYFFDLMGELMKLALEEVDVGLVDETKKQGYQIEKKNKRSVVTVFGEISYWRRRYVCPGRKAKYPLDQLMGYDKYKRYSVLAVKNILQVSAVSTYRNTALAVNTLSSFNISHSQVGKLIVQAGKQIKAQQQSEERYDGITQKKKVPVLYLEGDGVVIKGTKKRLEFHLYQVCEDIINVSKTRRKRVQAKEFVSLSRLNALQEIKAYLANTYDLSDTLIISNADGGAGYAKKDFDEIVGRCKQHEHFLDVFHLNKKIKDRLGFMPAMQGKLISAVEFKYDRRLTDVILDTIESNLIEELNTPENHENLRRLRGYLHRHWADIEPFKMRNLPVIKAIGCCESNHRKYTYRVKGQGKYWSEDGAEGILRVLTCIKNNELEYWLSSEFAGSEINAITEQELKAAARDSLKKRHESHLGIQRGALTTQTAGSSYLSKFNRMLNHINY
>NZ_CP009907.1|WP_052540807.1|738697_740482_+|N-6-DNA-methylase
MSNTKKLIRKTENHFNYPINRAIISGRILADLNDSPKVFSTKENFIHACLAYTDPKHEQIVKELKESIQTILADVKSNELFEVTNAYKHVSTKDLIEVLNAISEKHYFSGGNFENGLDELMLKIAEVESYDSVLDPTSGYKGAWLKLLKENSEQKITIQEIEKEFIALAYLNAKVTGANNFEIYQGDVLADPKYVVDGKLELFDKVITFPPISMKLNKEAMNKNKFNRFRFGKVGMRADYAFISNAIASLKDKGKAVIAVADGPLFQSGSTGKIRQNLISDDLIEAVISLPDHMFITAGVPINLLVINKDKHNFKGKIQFINGNQTNWFKHDRFVNALTSTGINEITKIYNEKIEKDGISTIINNDDYKDTLNVKKYILPTEITIDDQQYHINKENLQKGNRVSLDQLVEIKRGFNVTQRNETAAGKYLAIKVVDINDKKINRDKLSHINIPTNPSRYLLKKNDLLLSTRGTLGKVAMINEDNTNMVASANLVALRAISDNINMKWLMYYLSSPMGKFEISQATSGTAISTISPSDLRNIQIPVISKADQDQAVEQFEQNKIKLDQRLKELQKQYLENEDKLYDSWQMNQILTK
>NZ_CP009907.1|WP_052540810.1|740492_742796_+|DEAD/DEAH-box-helicase-family-protein
MDPEKMNLTEEDIKNRYISPAIFEIAGWKKKDSLMEYYYTDGKINVVDDVAKRGNGKKVDYLLLYKPNYPIAVIEAKDRKKHALPSAGLQQGMGYARDLQVPFAYSSNGDAFVEHDMLTGKERTLALDEFPTKEELWKRYIKEKKLSDKEIKAINEPYYSSRDTYSPRYYQQNAINRVVEKIANGDRRILLVMATGTGKTYTAFQIVYRLLKAGIKHRVLYLADRNILVDQARLNDFSPLSDKITKVQDGRMDSAYPIQFALYQQLAGRDEDVGHEPFRQLKPDFFDLVVIDEAHRGSAKADSQWRKILDYFDGPNVTHLGMTATPKNDKEASNIQYFGDPVYTYSLKQGIEDGFLAPYKVIRVNFNVDINGFRPIKGERDKHGREFDKKLYTTRDFDKSLVIDERTEMVAKYVSKYMKDNDRRWDKTIVFCEDIEHAERMRQAFVNENTDLVAQDSRYVMRITGDDNTGKAQLDNFEDVTSKVPTIVTTSKLLTTGVNVKTCKTIVLDSNINSMTEFKQIIGRGTRLDTDHGKSYFTIIDFRGVSRLFADPAFDGEPIEIIDGNKGTGSHKSHHPGVSEPPKEKYEVSHNVKVSNAETQFLDEHGNLITTSLVDYTKKNILGEYATLDNFLQAWNKADKKQVLLDEMEKHGILYKEIIKQKGIKDMDPFDLMIHLAYNQKPLTKSERIKNVKKSGILDKYQGAARDILDALLEKYKDDGIADLESNKVLSLPEFEKYGGAVKIILSFGGKKNYEDTIKKVKEKIYS
>NZ_CP009907.1|WP_052540813.1|742809_744288_+|SAM-dependent-DNA-methyltransferase
MAGTTTQFVKRIRDIMRNDPGINGDAQRIEQLSWILFLKVYDDRELVWDIDQDNYESIIPEGMHWREWAHDNKDGKALTSDELLDFVNNRLLPTLKNITVTNETSISKAIVKDAFIDANNYMKNGVLLRQVVNVVDEVDFTDPKDRHLFGDIYESILKELQSAGSSGEFYTPRALTDFIAETLKPKLGQRIADLACGTGGFLVSALNILNKQVHSVEDRELYNKAVFGIEKKGQPYILAVTNLLLHDVDNPDIVHGNSLEKRVTEYTDKDKFDLIMMNPPFGGSELPIIKQNFPTDLQSSETADLFLALIMYRIKDNGKVGVILPDGFLFGNDGAKLNIKKRMLKDFNLHTIIRLPGSIFSPYTPIATNILFFDKTGPTKETWFYRLDMPKGYKHFSKTRPMKLEHFDPVREWWNDRHEIQDEDGNYKSKAYTPEELAKNNYNFDLCGFPTETEEVLPPFELMDKYQKERKELNAKIDKQLSIIKQLLEEDD
>NZ_CP009907.1|WP_052540826.1|746044_746326_+|hypothetical-protein
MKITTNSIGGNTLGKTYSKFYYGSYKDVGDKPNKHNLVRYQGKSMITFFEKGSSDTTFRVVNRHHRKALYFQQGVGYIYFYRSRAVAKRYGNY
>NZ_CP009907.1|WP_023191603.1|749261_749636_+|DUF2513-domain-containing-protein
MELSHELERDMMLSIEKSDKYDPSSEVLDDLRSKGYEDPQIAYTAQKLYEGHLIEKKPSIDPTGVCCSFATGNLTYEGHQILDNIRDDSVWSKAKEKVAEVVSSASISIIAGAAQSYIKSKLGL
>NZ_CP009907.1|WP_052540829.1|749833_750070_+|hypothetical-protein
MWYDMDYKTGHLRSSNMVTIFIPIDIVAKIEAILNSNPRWGLPPFNEFLFSSEIKRCEFKPDDELKQFIRYFNKKHQK
>NZ_CP009907.1|WP_052540833.1|750409_750919_-|TetR/AcrR-family-transcriptional-regulator
MKRAQYDAQLILNRSYDLFKKGGLINVKVRAVAKVCHCSVIPIYRCFQSRDELCKAVLNHSFSVFEKDLLKEIESHNTDSHDPYWRLYSALSHQRGLVKEANIGNMKIIDKLAQITHKHFSNKSTYALRAYIQLICMILNIKSTNELSDSNSSLLAFSKITQNFLKTLT
>NZ_CP009907.1|WP_052540836.1|750915_751173_-|hypothetical-protein
MRKFKVIKIIIVIVTLVALIAFITFNPNQHSDKLSSHRSNNNELPVLQENKKRERNLTSIGISLAGLSSYILVSTFESKSKGQKL
>NZ_CP009907.1|WP_052540838.1|751359_751818_-|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein
MLDDLENTLISELRTAFKKDRDILTKLKHKPNEDEMLTLTDPTFRHIFSFCDAKKEILRALLSPNDDLLFVRKFQNIAEKEFTIRAKYLSKGKELNNKDILLIKTYTTQVMTLIENWLFFSDSISQKRITEIIGEVQIISPFEVLKGKSKIE

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Crispr_ID: NZ_CP009907_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009907_2

890302-891796

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCTCCACGTATGTGGAGGTGATCC	PILER-CR
GTATTCTCCACGTATGTGGAGGTGATCC	CRISPRCasFinder
GTATTCTCCACGTATGTGGAGGTGATCC	CRT

24 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh

The CRISPR arrays of NZ_CP009907_2

>merge|NZ_CP009907|2|890302-891796|PILER-CR,CRISPRCasFinder,CRT
GTATTCTCCACGTATGTGGAGGTGATCCCATATCTGGATCGTTAAGTTGACGAGTACCAGTGTATTCTCCACGTATGTGGAGGTGATCCTAAAGAGAATGGAATAGCAGTGCTAATGGGCAAGTATTCTCCACGTATGTGGAGGTGATCCTTTAATCAACGTTCAGCAAGGCAATGCAAGTGAGTATTCTCCACGTATGTGGAGGTGATCCTAAAAATATTAGATTAATTGATAACTTGAACAAGTATTCTCCACGTATGTGGAGGTGATCCTTACAAGTGACCGTGGATGAAGCCCGTAGAAAGGTATTCTCCACGTATGTGGAGGTGATCCTAATGATGATCCAGATCTTGCAACAGATGAAGTGTATTCTCCACGTATGTGGAGGTGATCCTGATTTAACTGATACAAAGGTTATGAACGAGCTAGTATTCTCCACGTATGTGGAGGTGATCCCAATGAACCATAAAGAAGTAGCAGAATTAAGCAGTATTCTCCACGTATGTGGAGGTGATCCTACAAGTTGTGATCTTCGAGCCATTTCTTGCTTGTATTCTCCACGTATGTGGAGGTGATCCTACCACCGTTGGCATACCAGTTATGAGCTTTTCGTATTCTCCACGTATGTGGAGGTGATCCCTCGTAACCAATCCCAGTAAAAATGGAGCTAGTGTATTCTCCACGTATGTGGAGGTGATCCCTGTATACGCTACTAGTATAGTCTTGTTTGGTGGTATTCTCCACGTATGTGGAGGTGATCCTCTACAGATGTTTCAGCAGATAAAGTTAATAGCGTATTCTCCACGTATGTGGAGGTGATCCCGCAGATATTAGACACACCTTATTCAATCAAGTGTATTCTCCACGTATGTGGAGGTGATCCTGGTGATGACTGGTATCCAGTGGCTGGCGGTGGAGTATTCTCCACGTATGTGGAGGTGATCCTTCTATTGATACTTCTAAATTTGACATGACTTTGTATTCTCCACGTATGTGGAGGTGATCCCTTTGGATATTTCAGGCGCTGAAAAGAAAATCAGTATTCTCCACGTATGTGGAGGTGATCCTAAGCAATTTTGAAGTTAGCGAACATTTTGGCGGTATTCTCCACGTATGTGGAGGTGATCCTTTCAAAGTCTTTTGTCTTTTGTGATATTTCTCGTATTCTCCACGTATGTGGAGGTGATCCTCAGCTTATTACAGCCTGCGTGATTGCATGTTTGTATTCTCCACGTATGTGGAGGTGATCCCACCATCGCCAACTTAATCCATCATTTTTATCAGTATTCTCCACGTATGTGGAGGTGATCCTAATCGTCTTTAAATTCTAATATTCCTGTCCAAGTATTCTCCACGTATGTGGAGGTGATCCTATAAGAACCAACTCCTACTCCTACAGCTACTGCGTATTCTCCACGTATGTGGAGGTGATCCTGAATTATCCAAACTTAATAAGTAAGTCTTGCCGTATTCTCCACGTATGTGGAGGTAATCT

>NZ_CP009907|2|1|890302-891796|PILER-CR
GTATTCTCCACGTATGTGGAGGTGATCC	CATATCTGGATCGTTAAGTTGACGAGTACCAGT
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAGAGAATGGAATAGCAGTGCTAATGGGCAA
GTATTCTCCACGTATGTGGAGGTGATCC	TTTAATCAACGTTCAGCAAGGCAATGCAAGTGA
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAATATTAGATTAATTGATAACTTGAACAA
GTATTCTCCACGTATGTGGAGGTGATCC	TTACAAGTGACCGTGGATGAAGCCCGTAGAAAG
GTATTCTCCACGTATGTGGAGGTGATCC	TAATGATGATCCAGATCTTGCAACAGATGAAGT
GTATTCTCCACGTATGTGGAGGTGATCC	TGATTTAACTGATACAAAGGTTATGAACGAGCTA
GTATTCTCCACGTATGTGGAGGTGATCC	CAATGAACCATAAAGAAGTAGCAGAATTAAGCA
GTATTCTCCACGTATGTGGAGGTGATCC	TACAAGTTGTGATCTTCGAGCCATTTCTTGCTT
GTATTCTCCACGTATGTGGAGGTGATCC	TACCACCGTTGGCATACCAGTTATGAGCTTTTC
GTATTCTCCACGTATGTGGAGGTGATCC	CTCGTAACCAATCCCAGTAAAAATGGAGCTAGT
GTATTCTCCACGTATGTGGAGGTGATCC	CTGTATACGCTACTAGTATAGTCTTGTTTGGTG
GTATTCTCCACGTATGTGGAGGTGATCC	TCTACAGATGTTTCAGCAGATAAAGTTAATAGC
GTATTCTCCACGTATGTGGAGGTGATCC	CGCAGATATTAGACACACCTTATTCAATCAAGT
GTATTCTCCACGTATGTGGAGGTGATCC	TGGTGATGACTGGTATCCAGTGGCTGGCGGTGGA
GTATTCTCCACGTATGTGGAGGTGATCC	TTCTATTGATACTTCTAAATTTGACATGACTTT
GTATTCTCCACGTATGTGGAGGTGATCC	CTTTGGATATTTCAGGCGCTGAAAAGAAAATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TAAGCAATTTTGAAGTTAGCGAACATTTTGGCG
GTATTCTCCACGTATGTGGAGGTGATCC	TTTCAAAGTCTTTTGTCTTTTGTGATATTTCTC
GTATTCTCCACGTATGTGGAGGTGATCC	TCAGCTTATTACAGCCTGCGTGATTGCATGTTT
GTATTCTCCACGTATGTGGAGGTGATCC	CACCATCGCCAACTTAATCCATCATTTTTATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TAATCGTCTTTAAATTCTAATATTCCTGTCCAA
GTATTCTCCACGTATGTGGAGGTGATCC	TATAAGAACCAACTCCTACTCCTACAGCTACTGC
GTATTCTCCACGTATGTGGAGGTGATCC	TGAATTATCCAAACTTAATAAGTAAGTCTTGCC
GTATTCTCCACGTATGTGGAGGTAATCT

>NZ_CP009907|2|2|890302-891796|CRISPRCasFinder
GTATTCTCCACGTATGTGGAGGTGATCC	CATATCTGGATCGTTAAGTTGACGAGTACCAGT
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAGAGAATGGAATAGCAGTGCTAATGGGCAA
GTATTCTCCACGTATGTGGAGGTGATCC	TTTAATCAACGTTCAGCAAGGCAATGCAAGTGA
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAATATTAGATTAATTGATAACTTGAACAA
GTATTCTCCACGTATGTGGAGGTGATCC	TTACAAGTGACCGTGGATGAAGCCCGTAGAAAG
GTATTCTCCACGTATGTGGAGGTGATCC	TAATGATGATCCAGATCTTGCAACAGATGAAGT
GTATTCTCCACGTATGTGGAGGTGATCC	TGATTTAACTGATACAAAGGTTATGAACGAGCTA
GTATTCTCCACGTATGTGGAGGTGATCC	CAATGAACCATAAAGAAGTAGCAGAATTAAGCA
GTATTCTCCACGTATGTGGAGGTGATCC	TACAAGTTGTGATCTTCGAGCCATTTCTTGCTT
GTATTCTCCACGTATGTGGAGGTGATCC	TACCACCGTTGGCATACCAGTTATGAGCTTTTC
GTATTCTCCACGTATGTGGAGGTGATCC	CTCGTAACCAATCCCAGTAAAAATGGAGCTAGT
GTATTCTCCACGTATGTGGAGGTGATCC	CTGTATACGCTACTAGTATAGTCTTGTTTGGTG
GTATTCTCCACGTATGTGGAGGTGATCC	TCTACAGATGTTTCAGCAGATAAAGTTAATAGC
GTATTCTCCACGTATGTGGAGGTGATCC	CGCAGATATTAGACACACCTTATTCAATCAAGT
GTATTCTCCACGTATGTGGAGGTGATCC	TGGTGATGACTGGTATCCAGTGGCTGGCGGTGGA
GTATTCTCCACGTATGTGGAGGTGATCC	TTCTATTGATACTTCTAAATTTGACATGACTTT
GTATTCTCCACGTATGTGGAGGTGATCC	CTTTGGATATTTCAGGCGCTGAAAAGAAAATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TAAGCAATTTTGAAGTTAGCGAACATTTTGGCG
GTATTCTCCACGTATGTGGAGGTGATCC	TTTCAAAGTCTTTTGTCTTTTGTGATATTTCTC
GTATTCTCCACGTATGTGGAGGTGATCC	TCAGCTTATTACAGCCTGCGTGATTGCATGTTT
GTATTCTCCACGTATGTGGAGGTGATCC	CACCATCGCCAACTTAATCCATCATTTTTATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TAATCGTCTTTAAATTCTAATATTCCTGTCCAA
GTATTCTCCACGTATGTGGAGGTGATCC	TATAAGAACCAACTCCTACTCCTACAGCTACTGC
GTATTCTCCACGTATGTGGAGGTGATCC	TGAATTATCCAAACTTAATAAGTAAGTCTTGCC
GTATTCTCCACGTATGTGGAGGTAATCT

>NZ_CP009907|2|1|890302-891796|CRT
GTATTCTCCACGTATGTGGAGGTGATCC	CATATCTGGATCGTTAAGTTGACGAGTACCAGT
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAGAGAATGGAATAGCAGTGCTAATGGGCAA
GTATTCTCCACGTATGTGGAGGTGATCC	TTTAATCAACGTTCAGCAAGGCAATGCAAGTGA
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAATATTAGATTAATTGATAACTTGAACAA
GTATTCTCCACGTATGTGGAGGTGATCC	TTACAAGTGACCGTGGATGAAGCCCGTAGAAAG
GTATTCTCCACGTATGTGGAGGTGATCC	TAATGATGATCCAGATCTTGCAACAGATGAAGT
GTATTCTCCACGTATGTGGAGGTGATCC	TGATTTAACTGATACAAAGGTTATGAACGAGCTA
GTATTCTCCACGTATGTGGAGGTGATCC	CAATGAACCATAAAGAAGTAGCAGAATTAAGCA
GTATTCTCCACGTATGTGGAGGTGATCC	TACAAGTTGTGATCTTCGAGCCATTTCTTGCTT
GTATTCTCCACGTATGTGGAGGTGATCC	TACCACCGTTGGCATACCAGTTATGAGCTTTTC
GTATTCTCCACGTATGTGGAGGTGATCC	CTCGTAACCAATCCCAGTAAAAATGGAGCTAGT
GTATTCTCCACGTATGTGGAGGTGATCC	CTGTATACGCTACTAGTATAGTCTTGTTTGGTG
GTATTCTCCACGTATGTGGAGGTGATCC	TCTACAGATGTTTCAGCAGATAAAGTTAATAGC
GTATTCTCCACGTATGTGGAGGTGATCC	CGCAGATATTAGACACACCTTATTCAATCAAGT
GTATTCTCCACGTATGTGGAGGTGATCC	TGGTGATGACTGGTATCCAGTGGCTGGCGGTGGA
GTATTCTCCACGTATGTGGAGGTGATCC	TTCTATTGATACTTCTAAATTTGACATGACTTT
GTATTCTCCACGTATGTGGAGGTGATCC	CTTTGGATATTTCAGGCGCTGAAAAGAAAATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TAAGCAATTTTGAAGTTAGCGAACATTTTGGCG
GTATTCTCCACGTATGTGGAGGTGATCC	TTTCAAAGTCTTTTGTCTTTTGTGATATTTCTC
GTATTCTCCACGTATGTGGAGGTGATCC	TCAGCTTATTACAGCCTGCGTGATTGCATGTTT
GTATTCTCCACGTATGTGGAGGTGATCC	CACCATCGCCAACTTAATCCATCATTTTTATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TAATCGTCTTTAAATTCTAATATTCCTGTCCAA
GTATTCTCCACGTATGTGGAGGTGATCC	TATAAGAACCAACTCCTACTCCTACAGCTACTGC
GTATTCTCCACGTATGTGGAGGTGATCC	TGAATTATCCAAACTTAATAAGTAAGTCTTGCC
GTATTCTCCACGTATGTGGAGGTAATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009907.1\|WP_172644363.1\|896437_897379_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP009907.1\|WP_052540931.1\|879544_881038_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341135
NZ_CP009907.1\|WP_003629407.1\|872957_873464_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_052540937.1\|885294_885714_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_052540940.1\|886194_886698_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_025283738.1\|897397_898039_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP009907.1\|WP_052540953.1\|898057_899170_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP009907.1\|WP_003627702.1\|899150_899876_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP009907.1\|WP_052540947.1\|894830_895556_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP009907.1\|WP_052540959.1\|901488_902370_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|378244
NZ_CP009907.1\|WP_052540920.1\|873694_874873_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP009907.1\|WP_052540965.1\|905340_908166_+\|MucBP-domain-containing-protein	unknown	unknown	gnl\|CDD\|375451
NZ_CP009907.1\|WP_052540944.1\|891864_894606_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP009907.1\|WP_172644352.1\|888465_888675_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP009907.1\|WP_172644351.1\|888103_888505_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP009907.1\|WP_046814643.1\|887092_887713_-\|C39-family-peptidase	unknown	unknown	gnl\|CDD\|227323
NZ_CP009907.1\|WP_025283735.1\|900544_901489_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP009907.1\|WP_052540934.1\|881052_883950_+\|SIR2-family-protein	unknown	unknown	gnl\|CDD\|238697
NZ_CP009907.1\|WP_052540956.1\|899889_900543_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP009907.1\|WP_052540924.1\|878103_879558_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533

Protein	Function_ID	Function_description	E-value
NZ_CP009907.1\|WP_172644363.1\|896437_897379_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.16636e-29
NZ_CP009907.1\|WP_052540931.1\|879544_881038_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341135	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2. This model contains Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2 and similar TRD-CR's. S.SonII recognizes 5'... GTCANNNNNNRTCA ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. S.SonII TRD1-CR1 does not belong to this subfamily.	1.53858e-26
NZ_CP009907.1\|WP_052540965.1\|905340_908166_+\|MucBP-domain-containing-protein	gnl\|CDD\|375451	pfam17966, Mub_B2, Mub B2-like domain. This entry corresponds to the Mub B2 domain. This domain is related to the Mub B1 domain pfam17965. This domain may be involved in mucin binding. This domain is often found associated with the related pfam17965 in bacterial cell surface proteins.	6.82204e-21
NZ_CP009907.1\|WP_052540959.1\|901488_902370_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.48956e-39
NZ_CP009907.1\|WP_025283738.1\|897397_898039_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	8.31225e-21
NZ_CP009907.1\|WP_052540953.1\|898057_899170_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.18344e-151
NZ_CP009907.1\|WP_003627702.1\|899150_899876_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.67116e-53
NZ_CP009907.1\|WP_052540947.1\|894830_895556_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	3.31501e-40
NZ_CP009907.1\|WP_052540920.1\|873694_874873_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	6.32758e-109
NZ_CP009907.1\|WP_052540944.1\|891864_894606_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.9798e-81
NZ_CP009907.1\|WP_172644352.1\|888465_888675_-\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.39453e-09
NZ_CP009907.1\|WP_172644351.1\|888103_888505_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	2.82242e-11
NZ_CP009907.1\|WP_046814643.1\|887092_887713_-\|C39-family-peptidase	gnl\|CDD\|227323	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown].	8.88962e-32
NZ_CP009907.1\|WP_025283735.1\|900544_901489_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.15063e-127
NZ_CP009907.1\|WP_052540934.1\|881052_883950_+\|SIR2-family-protein	gnl\|CDD\|238697	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.	1.28034e-29
NZ_CP009907.1\|WP_052540956.1\|899889_900543_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	3.00378e-73
NZ_CP009907.1\|WP_052540924.1\|878103_879558_+\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	3.7123e-65

>NZ_CP009907.1|WP_172644352.1|888465_888675_-|peptidoglycan-binding-protein
MGTWYGKNYYNQATYNAVKNFQRRHGLKATGNVNLKTWQKMGFSKKSWYGIDSYVTPWLGKAEKLTSKQ
>NZ_CP009907.1|WP_172644351.1|888103_888505_-|C40-family-peptidase
MAWQGRKAHVEAMINQAYKYMGKPWLAGCSSSPAYGVDCSGLVMQGLYAGGISPVPTSSIGHAHPGNEWNSRNLWADKHLKRVAYSQRRRGDLVFYYQPGAHTIWHVAIYLGHNRVIESWPPCVSCSNFQQST
>NZ_CP009907.1|WP_046814643.1|887092_887713_-|C39-family-peptidase
MLKDVRKIPHTKHYSYFDQLGRRRMKNTSTKKAYYWINKKGQITGIKNNAKVICQRPQMPTGCEITAVTMMLNFAGKKVSKYQAAKVMPRSSNPNKGFVGSPYKKFPLGFWVAPGGVKPVVQHYLGKSKIMTNCSINAIKQKLLRSHLVVVWVGMFDGISNHAITLTGYHGNTLYYNDPWTGTKRKISVTKFKIHWALDGHRAISY
>NZ_CP009907.1|WP_052540940.1|886194_886698_+|hypothetical-protein
MTRKKLTEVQFYFENVEDGAIPGNIIEDMQFDGLHVERYQHFERGDIIFNKVLIADNFLIKLDYELANKCFTNCNEPMGERLSDFNDIVDIVLCFEDGTQERIGFPWVGSSEDNNEYQRSGLEVNKPFDRNDFSELDPMLVEDIKESEKNDRFLNRKMLTVYVDKEN
>NZ_CP009907.1|WP_052540937.1|885294_885714_-|hypothetical-protein
MWIILIINTIITISAIIVSFKNRSEVFSLFNAGIIFIIWSIIFLLGAISIYRNFDTSSLMMFIAGILLILGIIMLMFSFINKKVKKIRLQDIAITMMVASVALVGLMQGLNFNFLNLIVPEVSLIIGLICFVVNTINNR
>NZ_CP009907.1|WP_052540934.1|881052_883950_+|SIR2-family-protein
MSNNDSLQTPYEETRRIIQEAIKDDQLVLFIGAGVSINSGMPSWQEAIDLIGERLGFTKIDSTDFLKIPQYYYNSYGKQAYNSLMQEIFKYQVELPVSQIHRKLLKFNAKTIITTNYDDLIERTSEEKGEIRQVICQDYDIPYTKYNKQLIKMHGDFDHDNFVLKENDYLNYSNNFRLIENYVKAIVGSKVVLFVGYSFNDPDLKQIFNWIKSILGKDMRRAYLINADGIYNENEAVYYRNLGIEVIYASAWDRCKFIKNKPGQNLENVLDQLLLPIDTSDVVDSIYTSLKKYEGFKYIAVKYLNQSLSRYGIYISQDLILQSKQNNAKFEDILKRIFADKNMDNSCNKRKIDEIKKILNHSIIKGINLGKKTIKFTNSIENNKWQKYVFTFDSLELEKLKNKNEICIKKNDGELFLEQASIAYYLDEYLLSFNYLKRASRYLFRNKIYGLFFIAQINMKMLGKFIVDNQWRLNIDTLTVELIKSEINDININEMIENISDLKNKGPLVEDICQLNFSYSLFQKLYRLNIEANEEANTIYTLFAGMPAYEISRIEVQDFLNFEINNYLLFDRYQEIVDTYKLYVRTIISSVAAKDVTDTSDPLLPEGNVHSKYLSDIDIFLIIRYFSSTDIEKLFDEHKKDGFINLNDKGMDYLETVIPNIIRSNFKTDFYDDLYWRLIAVGGYLQLNKDIFQKLLAVMPEKITNHSLIINKSSIYKFLNNVRSQKLVNKQESDSLYKILQTIINLDGKIEVENSEKLIYLLNKILLDVNKAYDNTVIIQKCIRRGFDNLLMYLFDFSTKDTKKKIVNYFKDKRYDNELVEYEAKLDLAKYNILDFDIETENNIIKYLETENRQASAVHIRPNKIVILTHGLAILYIQNKICNYKSVLKIIDKYASPKDKWLIKFKDFDYKDFLVSWLTECDRAILKNISMNNKVRHEISNKLIQAYKENRLSPDLEWIYFNYFS
>NZ_CP009907.1|WP_052540931.1|879544_881038_+|restriction-endonuclease-subunit-S
MKTNSLDFDAQALREKILDLAMRGKLVPQDPNDEPASVLLEKIKAEKAELIKEKKIKKTKPLPPITDDEKPFDIPDSWEWVRLGDVLSLENGAIRRGPFGSSLKKAYFVPKSKNTYKVYEQGNAIHKSIDYGSYYISPQKFEELKSFAIRPKDVIISGAGTIGKTYILPDNAPEGVINQALIRVRLNNSLITNEYFLLAFQQKVGLLNKRAKGTAIKNMFSISHMKNDLVWALPPLSEQSRIAAKIAQLFALLRKVETSTQQYAKLQTLLKSKVLDLAMRGKLVKQDPNDEPASVLLEKIKAEKQELIKEKKIKKTKPLPPITDDEKPFDIPDSWEWVRCQSVTTTGNFKSITPDKIKIGENLIELADIESYSGKLINVEKITEKVGSNKYQYVKGDVLFAKLRPYLKKVVLAPNNGVCTTELLPIDGININNNFLYYVFTSDSFFNQIKKEMHGVNLPRVSPKKLSELIIPLPPLLEQNRIVANLNNVCAIIDKNI
>NZ_CP009907.1|WP_052540924.1|878103_879558_+|N-6-DNA-methylase
MTNQEIVQKLWNECNVLRDDGVSYQDYITELTYILFLKMSKEQDEEKDIPEKYRWDNLVNKEGLELKNFYRQLLLDLGNPEVVKSERINAIYANASTAIDEPANLEKIIKDINDLDWWSAREEGLGDLYEGLMEKNATEVKSGAGQYFTPRVLINMMVKMTKPKIGDRCNDPAAGTFGFMVAADQYLKDKTDDYSELSEEKYDFQVKEAFSGMELVPNTHRLAIMNEYLHGMDGRLEQGDSLSANGKWMKNFDVVLTNPPFGTKKGGERVTRDDLTYETSNKQLNFLQIIYNSLKRDGKARAAVVVPDNVLFADGVGEEIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGEEDKDNTKETWIYDMRHQMRSFGKRNPLNDKDFVEFEKLFCVDDRSKRKETWDKEKNPNGRWRKFTIDEIKKRPNTSLDISWMSDEEEHETKSLKEILSDMNEKSKAISEAIAELNKALEGIDDSEDE
>NZ_CP009907.1|WP_052540920.1|873694_874873_+|IS256-family-transposase
MNDFTKNMAPALFNQDKINDLLRHEIQQAVNDLLEAELTACLGYNPYARDGWNTGNSRNGTYFRKVDTQFGKIEIQVPRDRNGLFHQHTLPDYKQHADVLENMIIKLYSKGVTTREIADLIEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDKFFCVYLDATYVPLRRETFEREAVYIAIGIKPNGHKEVIDYCIAPNENIEVWTELLQSMKSRGLEQVELFLSDGVVGMKTALAKTYPQAHFQRCLVHVMRNICAKVRVEDREAIMNEFKQIHQQANKAAAVDVLHAFYAKWDKSYNHVIRNLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKVKPKAEFPTEQSLDTFIGIQAMSYNDRYFNRIHKGFGQVQDNLESYFD
>NZ_CP009907.1|WP_003629407.1|872957_873464_-|hypothetical-protein
MKNYTIDHDIYLMNHKNGDVLKVTVNKEDSVKILQLYRQDGLGNYYLDKNSRLKKQDNLTTKEDIVKASKKIGGHNTHHIDKWHHQVVPIYNAQHQITGFKPKLVLDHHIRIQNAKRYLRHLDHHHVIYLSTTSRNTLLKPINHLKNAIYADRNKEMVLAHKIHKLSR
>NZ_CP009907.1|WP_052540944.1|891864_894606_+|CRISPR-associated-helicase/endonuclease-Cas3
MQLSNKTLSLWGKKNVNDDNEKLWLPLIAHLIDTKNVINWLYNHWINDGQRHILQRNFEDEDIVQNLVKFLGYIHDIGKATPAFQIKQSYINNEDLDQNLVEKLLQNGFDGLDNSKINTSKTPHALAGEVILENNGLNESIGAIIGGHHGKPQEEYFDYEDQLNNWTSNYYQSDSGSETSVGANWKQVQNELINYGLGLCHFNNLEDIPDVTEPQAVILEGLVIMADWLASGEYLVKDNQRIPLFPLISVDQDFASINTDERYRQGISVWADLFDPWEPEVINNPQRVYKERWKITPRQIQEKMSETIGASLDPGIIIVEAPMGIGKTEIALTAVEQLAAKTGMNGLFFGLPTQATANAMFNRVDKWLSEIATDQKEKLQIKLMHGKAQFNEEYRNIPNADNIEDDSGSVVVNEWFNGKKSILSSFVIGTVDQLLLMGLKQKHLALRHLGMSGKVVVIDEVHAYDIYMDSYLEKAVQWLGAYHVPVIALSATLPVAKRNSLLQAYCVGKYGNKRFKTTNEDWKTCHSYPLLSILDGKTLKQVSDFSDELKNTSIEITRLNIEDSELIKTINQKISDGGVAGVIVNTVRRAQELARLAESKMPSDVNILVLHSAFLATDRRKLENKLQDAIGKNKKRPYKMIVIGTQVLEQSLDIDFDVMYTDIAPMDLILQRIGRLHRHQIQRPKKLEKPQLYIMGINEFGNYGDANESIYAKYLLTKTDYFLKDKVNIPSDISDLVQKVYSEITDSEIKNLRESKQIFEINQKKSKHKANGYQIEAPDDEETLHGWLDNDSGTDLKDSKAEAAVRDTKESIEIVLLYQDDKGFNLLNGQSIEDVYDNIIAQQLIRLPHALTINIDRSIEELEKITTKHFPQWKDSNWLKGSLALVLDKNKETEFNGYSVKYSRNLGLIYKKE
>NZ_CP009907.1|WP_052540947.1|894830_895556_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSQSQSFNLVSDPWIKVLKKDYNETEVSLIELFDNSSEYLQLSGDMKSQDLAILRLLLAILLSIYTRFDTDGNQYDWVDLDDEWRVIKIDEDDVKTIGRSLLKTWKTLYSQKNFSSKVAEYLEKYKSKFDLFGETPFYQVNATVYDQNVPENKQIVKGKGTVTVKQINRRISESNNTPSIFSPKTENEKNKINFAELARWLITYQNYTGVTDKTKVNAKNKFSVSPGWLYSINPVYIKGKD
>NZ_CP009907.1|WP_172644363.1|896437_897379_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLADYDKNELETQLCQKPVWEYDDINEYIQQRLSGMFPDNLAELYTVWSRMLHIEWKNEQPTIFSAGLPKLDNKNIFLEPMTTWRKNKDNEEFPATRNKNHLNEAIWRNFGQYIKVKKEGNYRVPGIINWINKLKSEKILAKHDNVNVTTIAMISDGNATSQAPYAEVVDNMDAKADVLFDNTPDIARQWPTRIENEVLNTQKIATYFYWFAKEVSKLRGNDDKNSGWASKEVAQLYDKLNLPFYSWLASLKSNDDRDERVQEWRDNLNKIVAIQAGNIFRDATANEIIGRDKDNIFTSYNKLRRNVYVSLK
>NZ_CP009907.1|WP_025283738.1|897397_898039_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MDNKITQVTMRVINELYHNGDPDKAALANLRRTLSITDKGAEKIWPLIFQAVGKNNQHLLSTSNVPSRFEIAIYTALHCYAMFQQGSDAFVFGRIPYKKEDQLNENEQVEEKGVSLFTALKQIKDNDDKIKTALDRRVTALLATTNAASAINSINHLVNILKGKNLVKKVDFAQLAADLYSFQYSSQQARAVALKWGRDYYWNVYQLETTDKD
>NZ_CP009907.1|WP_052540953.1|898057_899170_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSKNLYLDINILQTVPSSNINRDDTGSPKTAIYGGVTRSRVSSQSWKRAIRLGFQEDSRDAKWLKGFRTLKGVQLLIKKIQELDNTISNDDALEKAKAVFAAAGIKLKKDKDTGKYLTGALFLISNGQLEKIAKIALDSDGIDKETGKEIKKALMEEQSLDLALFGRMVADNPDLNVDASSQVAHAISTHEITPEFDFYTAVDDVKKEGSSGSAMLGTIEYNSSTLYRYANVNVLDLMHNLGNEDLTLEGIKLFIKEFIMTMPTGKENTFANKTLPQYVMVNVRDDTPVNLVSAFETPVESKGGYVQKSINRLKDEYNRTLKYVDKPAFDIELADSDKKIVDKQAKSVTDLIDQTAEFIKQELNNEDSND
>NZ_CP009907.1|WP_003627702.1|899150_899876_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTATIRLTAPLQSYGNQASFNQRTSDNYPSKSAVIGIIAAALGYRRDDARILQLNNLLFAVRIEQSGNMMTEFQTVEYQKSSTKTARKLTYREFIQDAVFMVAIGSDNDHEIEKIVSALKHPKFQLYLGRRSNPPAGPLMIETYDEENPLQVLEKLSWQAEPWYQKRLRAPKFLTRIIADAELNPENNITMIKDKVGSFNQKNRYYQYRPVIIKKKIELDNLEYKSSTDLKTDLDYWSFV
>NZ_CP009907.1|WP_052540956.1|899889_900543_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDTNDRQKISDLTHLGSYHNWVEQSFPDEVKQGTRLRHLWRIDEFSNKKYLLLVSKNKPKLNNLERYGVPYTAATKDYDRFLNQLVEGKKYRFRLTANPTYRITDSKSGKSRVVPHITILQQTNWLLERTKKHGFEIVRNSEEVYKLNISERDWPRLRRKGNHLIKLSRVTFDGILQITDLSKFKLALINGIGREKAYGMGLLTVIPLEK
>NZ_CP009907.1|WP_025283735.1|900544_901489_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MEKNFGAKKPEIQELGRVSDRISFIYVEHAKINRQDSAIQVADSRGIVDIPVALVSVLLLGPGIDITHRAMELIGDSALAVVWVGECGVREYAHGRALNHSSRLLEAQAKLVSNRRSRLAVARKMYEMRFPDEDFSGLTMQELRGKEGTRVKKIYREQSKLTGVKWTRREYKVDDFESGTPINKALTAAHQALYGLCYSVVAALGVSPGLGFIHTGHDLSFIYDFADLYKADYSIPIAFKITAEYGDSDIATHTRIAMRDKFRTCKLLVKMVKDLKYLLLNEKINDDLDVNVSMSLWDDREGLQKFGVQYHEVS
>NZ_CP009907.1|WP_052540959.1|901488_902370_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVITLTKVPQSLRGDLTKWCQEVQTGVYVGSFSARIRDLLWKRILLNIGRGEATLIYTTNNELGYDFKTTRKDKQVVQFDGIPVMMHLKNQSSTNKRKLGFSTAAHYHRANTLHKKSNEKDVLSSIVALDIETTGLDITKDQIISIGAVKYISKSKCERFYRLIKTDYEIPTHISKITQLTSEKLNQSGIELFDALEDLKKFLADRLIVGYNLNFDINFLNRDYQKYNNSHILNNLKDILPIIKNKNKFIDNYKLNTVLKNYGIKNAEPHNALSDACATLDLIIKLVEQGSF
>NZ_CP009907.1|WP_052540965.1|905340_908166_+|MucBP-domain-containing-protein
MTIRTIAHKRLVVGEKKQRFGFRKTILGLCGAILGSTLLMADATNNAHTVYAAESDPDQAKSVQIDDNAAKEVAQTKADAAKDNGASTDVSKASAKTPVEAKGNEGTNTANGLNGKAGQPLAKKEVPQLNSSLKQYEKAGADKNQGADKNQGADKGATGTGADKSGSQLGSQTGTQGTGTGADKGAQVDKSAATAASRARNRRSVVQPMADDATSQTNLDGKTQYSSLNNAQILSFELNSQDSNAPTATGVNLTATYTQANLPQQFKNDGMTGDTFWLYSGADLLKKNVSITKHWANAGSINGRNVDFHETFHDFVAQNNPGADGISSITGVDKQNPYLILISSNAVDNIDVYNANFQETFWFTYSNDGSIVDITKFNQANAAQNNNQIFYFLSASLSSNNGGGSNRREYVQTKDAKTVVISKNPINDPSTGFTAPASTMGLTSVSGTNVPDGLVYTNTDPSGYQSHDGEDSNPYYYALQGGVTFADFTSNKPTLYLGAVPISDSNIPWWSHSNWWWHGNHNKNSDFLSFVTYSIFNNKKVNETINYVDQTGKIVAPSHTDHITFITVKAWNGNTTYYKFGSQENPTLDNAGKPDSSWIQADNAKFGAIDNPPVNGYKVISTTAPGSDLNRVAKQTVNEDSKDLEFTVTYAKNAPTITTEKKTVNETIHYVYKDGSKAVDDHVAKPLEFTRQVSTDAVTGAKTYGAWSADQSFDAVTSPELKGYTADKAQIDKQTVNGDSKDLEFTVTYTKNAPTITTEKKTVNETIHYVYKDGSKAVDDHVAKPVEFTRQVSTDAVTGEKTYGAWSADQSFDEVKSPAIKGYTPDQAEIGTQTVTGDSSNLDFTVVYTANRSSTPATPATPATPATPAKLNNLGQSTNPSKLVQNSNMASVRNKKQANENEMPQTSENNSQSQTMSFIGILLAMFGSLLGFLGIKKHRND

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Crispr_ID: NZ_CP009907_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009907_3

902441-903200

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCTCCACGTATGTGGAGGTGATCC	CRISPRCasFinder
GTATTCTCCACGTATGTGGAGGTGATCC	CRT
GTATTCTCCACGTATGTGGAGGTGATCC	PILER-CR

12 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP009907_3

>merge|NZ_CP009907|3|902441-903200|CRISPRCasFinder,CRT,PILER-CR
GTATTCTCCACGTATGTGGAGGTGATCCTATAAAGGCTCGTAATTTTGGCTTTATTATTTAGTATTCTCCACGTATGTGGAGGTGATCCTATTGCCGGATTGGCCCCCAATGACTTATCTGTGTATTCTCCACGTATGTGGAGGTGATCCTAAAAGTCAATAAATATTACAAAAATAATTTCAGTATTCTCCACGTATGTGGAGGTGATCCCCAGCTTCAATTATCATTCTGGTGTAAAAAGCAGTATTCTCCACGTATGTGGAGGTGATCCCCACCTCTATGTTAATGCATATCATTTTGCGACGTATTCTCCACGTATGTGGAGGTGATCCCAACTCCGCCAATAAATAATTTTCTCATTTTTCGTATTCTCCACGTATGTGGAGGTGATCCTAGCTAATAAAATAGTGAATTATTTTAGAAGTGGTATTCTCCACGTATGTGGAGGTGATCCTACCCATTCACGCAAAGCTTCTAAGTCTCTAGCGTATTCTCCACGTATGTGGAGGTGATCCCGAGTACTGCGATTTAATATAAGTGCCCTAGCTGTATTCTCCACGTATGTGGAGGTGATCCTAAGTCAATAGTTTTATGATTTTTTTGTAAAAAGTATTCTCCACGTATGTGGAGGTGATCCCTCAACCCACGACGGTAACCACACCGCAACCAAGTATTCTCCACGTATGTGGAGGTGATCCCACTGTTAATTGTCTTAATGCTGATCATTTCAGGTATTCTCCACGTATGTGGAGGTGATCC

>NZ_CP009907|3|3|902441-903200|CRISPRCasFinder
GTATTCTCCACGTATGTGGAGGTGATCC	TATAAAGGCTCGTAATTTTGGCTTTATTATTTA
GTATTCTCCACGTATGTGGAGGTGATCC	TATTGCCGGATTGGCCCCCAATGACTTATCTGT
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAGTCAATAAATATTACAAAAATAATTTCA
GTATTCTCCACGTATGTGGAGGTGATCC	CCAGCTTCAATTATCATTCTGGTGTAAAAAGCA
GTATTCTCCACGTATGTGGAGGTGATCC	CCACCTCTATGTTAATGCATATCATTTTGCGAC
GTATTCTCCACGTATGTGGAGGTGATCC	CAACTCCGCCAATAAATAATTTTCTCATTTTTC
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTAATAAAATAGTGAATTATTTTAGAAGTG
GTATTCTCCACGTATGTGGAGGTGATCC	TACCCATTCACGCAAAGCTTCTAAGTCTCTAGC
GTATTCTCCACGTATGTGGAGGTGATCC	CGAGTACTGCGATTTAATATAAGTGCCCTAGCT
GTATTCTCCACGTATGTGGAGGTGATCC	TAAGTCAATAGTTTTATGATTTTTTTGTAAAAA
GTATTCTCCACGTATGTGGAGGTGATCC	CTCAACCCACGACGGTAACCACACCGCAACCAA
GTATTCTCCACGTATGTGGAGGTGATCC	CACTGTTAATTGTCTTAATGCTGATCATTTCAG
GTATTCTCCACGTATGTGGAGGTGATCC

>NZ_CP009907|3|2|902441-903200|CRT
GTATTCTCCACGTATGTGGAGGTGATCC	TATAAAGGCTCGTAATTTTGGCTTTATTATTTA
GTATTCTCCACGTATGTGGAGGTGATCC	TATTGCCGGATTGGCCCCCAATGACTTATCTGT
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAGTCAATAAATATTACAAAAATAATTTCA
GTATTCTCCACGTATGTGGAGGTGATCC	CCAGCTTCAATTATCATTCTGGTGTAAAAAGCA
GTATTCTCCACGTATGTGGAGGTGATCC	CCACCTCTATGTTAATGCATATCATTTTGCGAC
GTATTCTCCACGTATGTGGAGGTGATCC	CAACTCCGCCAATAAATAATTTTCTCATTTTTC
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTAATAAAATAGTGAATTATTTTAGAAGTG
GTATTCTCCACGTATGTGGAGGTGATCC	TACCCATTCACGCAAAGCTTCTAAGTCTCTAGC
GTATTCTCCACGTATGTGGAGGTGATCC	CGAGTACTGCGATTTAATATAAGTGCCCTAGCT
GTATTCTCCACGTATGTGGAGGTGATCC	TAAGTCAATAGTTTTATGATTTTTTTGTAAAAA
GTATTCTCCACGTATGTGGAGGTGATCC	CTCAACCCACGACGGTAACCACACCGCAACCAA
GTATTCTCCACGTATGTGGAGGTGATCC	CACTGTTAATTGTCTTAATGCTGATCATTTCAG
GTATTCTCCACGTATGTGGAGGTGATCC

>NZ_CP009907|3|2|902502-903200|PILER-CR
GTATTCTCCACGTATGTGGAGGTGATCC	TATTGCCGGATTGGCCCCCAATGACTTATCTGT
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAGTCAATAAATATTACAAAAATAATTTCA
GTATTCTCCACGTATGTGGAGGTGATCC	CCAGCTTCAATTATCATTCTGGTGTAAAAAGCA
GTATTCTCCACGTATGTGGAGGTGATCC	CCACCTCTATGTTAATGCATATCATTTTGCGAC
GTATTCTCCACGTATGTGGAGGTGATCC	CAACTCCGCCAATAAATAATTTTCTCATTTTTC
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTAATAAAATAGTGAATTATTTTAGAAGTG
GTATTCTCCACGTATGTGGAGGTGATCC	TACCCATTCACGCAAAGCTTCTAAGTCTCTAGC
GTATTCTCCACGTATGTGGAGGTGATCC	CGAGTACTGCGATTTAATATAAGTGCCCTAGCT
GTATTCTCCACGTATGTGGAGGTGATCC	TAAGTCAATAGTTTTATGATTTTTTTGTAAAAA
GTATTCTCCACGTATGTGGAGGTGATCC	CTCAACCCACGACGGTAACCACACCGCAACCAA
GTATTCTCCACGTATGTGGAGGTGATCC	CACTGTTAATTGTCTTAATGCTGATCATTTCAG
GTATTCTCCACGTATGTGGAGGTGATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009907.1\|WP_172644363.1\|896437_897379_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP009907.1\|WP_003627959.1\|909073_910411_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP009907.1\|WP_080890046.1\|915878_917108_-\|IS110-like-element-ISLhe4-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP009907.1\|WP_052540965.1\|905340_908166_+\|MucBP-domain-containing-protein	unknown	unknown	gnl\|CDD\|375451
NZ_CP009907.1\|WP_052540970.1\|917345_918605_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
NZ_CP009907.1\|WP_052540959.1\|901488_902370_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|378244
NZ_CP009907.1\|WP_025283738.1\|897397_898039_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP009907.1\|WP_052540953.1\|898057_899170_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP009907.1\|WP_172619750.1\|908308_908485_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_052540947.1\|894830_895556_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP009907.1\|WP_023192018.1\|914370_915603_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
NZ_CP009907.1\|WP_052541610.1\|918840_920019_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP009907.1\|WP_143441508.1\|908478_908829_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP009907.1\|WP_052540944.1\|891864_894606_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP009907.1\|WP_172644352.1\|888465_888675_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP009907.1\|WP_025283735.1\|900544_901489_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP009907.1\|WP_003627702.1\|899150_899876_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP009907.1\|WP_052540956.1\|899889_900543_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP009907.1\|WP_052541609.1\|908868_909099_+\|transposase	unknown	unknown	gnl\|CDD\|379018
NZ_CP009907.1\|WP_052540973.1\|920180_922802_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781

Protein	Function_ID	Function_description	E-value
NZ_CP009907.1\|WP_172644363.1\|896437_897379_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.16636e-29
NZ_CP009907.1\|WP_003627959.1\|909073_910411_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	1.69548e-100
NZ_CP009907.1\|WP_080890046.1\|915878_917108_-\|IS110-like-element-ISLhe4-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	5.86363e-31
NZ_CP009907.1\|WP_052540965.1\|905340_908166_+\|MucBP-domain-containing-protein	gnl\|CDD\|375451	pfam17966, Mub_B2, Mub B2-like domain. This entry corresponds to the Mub B2 domain. This domain is related to the Mub B1 domain pfam17965. This domain may be involved in mucin binding. This domain is often found associated with the related pfam17965 in bacterial cell surface proteins.	6.82204e-21
NZ_CP009907.1\|WP_052540970.1\|917345_918605_-\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.90779e-46
NZ_CP009907.1\|WP_052540959.1\|901488_902370_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.48956e-39
NZ_CP009907.1\|WP_025283738.1\|897397_898039_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	8.31225e-21
NZ_CP009907.1\|WP_052540953.1\|898057_899170_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.18344e-151
NZ_CP009907.1\|WP_052540947.1\|894830_895556_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	3.31501e-40
NZ_CP009907.1\|WP_023192018.1\|914370_915603_+\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.12159e-46
NZ_CP009907.1\|WP_052541610.1\|918840_920019_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	3.63897e-111
NZ_CP009907.1\|WP_143441508.1\|908478_908829_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	4.21874e-48
NZ_CP009907.1\|WP_052540944.1\|891864_894606_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.9798e-81
NZ_CP009907.1\|WP_172644352.1\|888465_888675_-\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.39453e-09
NZ_CP009907.1\|WP_025283735.1\|900544_901489_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.15063e-127
NZ_CP009907.1\|WP_003627702.1\|899150_899876_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.67116e-53
NZ_CP009907.1\|WP_052540956.1\|899889_900543_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	3.00378e-73
NZ_CP009907.1\|WP_052541609.1\|908868_909099_+\|transposase	gnl\|CDD\|379018	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This is a leucine-zipper-like or homeodomain-like region of transposase TnpC of insertion element IS66.	4.13458e-05
NZ_CP009907.1\|WP_052540973.1\|920180_922802_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP009907.1|WP_052540959.1|901488_902370_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVITLTKVPQSLRGDLTKWCQEVQTGVYVGSFSARIRDLLWKRILLNIGRGEATLIYTTNNELGYDFKTTRKDKQVVQFDGIPVMMHLKNQSSTNKRKLGFSTAAHYHRANTLHKKSNEKDVLSSIVALDIETTGLDITKDQIISIGAVKYISKSKCERFYRLIKTDYEIPTHISKITQLTSEKLNQSGIELFDALEDLKKFLADRLIVGYNLNFDINFLNRDYQKYNNSHILNNLKDILPIIKNKNKFIDNYKLNTVLKNYGIKNAEPHNALSDACATLDLIIKLVEQGSF
>NZ_CP009907.1|WP_025283735.1|900544_901489_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MEKNFGAKKPEIQELGRVSDRISFIYVEHAKINRQDSAIQVADSRGIVDIPVALVSVLLLGPGIDITHRAMELIGDSALAVVWVGECGVREYAHGRALNHSSRLLEAQAKLVSNRRSRLAVARKMYEMRFPDEDFSGLTMQELRGKEGTRVKKIYREQSKLTGVKWTRREYKVDDFESGTPINKALTAAHQALYGLCYSVVAALGVSPGLGFIHTGHDLSFIYDFADLYKADYSIPIAFKITAEYGDSDIATHTRIAMRDKFRTCKLLVKMVKDLKYLLLNEKINDDLDVNVSMSLWDDREGLQKFGVQYHEVS
>NZ_CP009907.1|WP_052540956.1|899889_900543_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDTNDRQKISDLTHLGSYHNWVEQSFPDEVKQGTRLRHLWRIDEFSNKKYLLLVSKNKPKLNNLERYGVPYTAATKDYDRFLNQLVEGKKYRFRLTANPTYRITDSKSGKSRVVPHITILQQTNWLLERTKKHGFEIVRNSEEVYKLNISERDWPRLRRKGNHLIKLSRVTFDGILQITDLSKFKLALINGIGREKAYGMGLLTVIPLEK
>NZ_CP009907.1|WP_003627702.1|899150_899876_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTATIRLTAPLQSYGNQASFNQRTSDNYPSKSAVIGIIAAALGYRRDDARILQLNNLLFAVRIEQSGNMMTEFQTVEYQKSSTKTARKLTYREFIQDAVFMVAIGSDNDHEIEKIVSALKHPKFQLYLGRRSNPPAGPLMIETYDEENPLQVLEKLSWQAEPWYQKRLRAPKFLTRIIADAELNPENNITMIKDKVGSFNQKNRYYQYRPVIIKKKIELDNLEYKSSTDLKTDLDYWSFV
>NZ_CP009907.1|WP_052540953.1|898057_899170_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSKNLYLDINILQTVPSSNINRDDTGSPKTAIYGGVTRSRVSSQSWKRAIRLGFQEDSRDAKWLKGFRTLKGVQLLIKKIQELDNTISNDDALEKAKAVFAAAGIKLKKDKDTGKYLTGALFLISNGQLEKIAKIALDSDGIDKETGKEIKKALMEEQSLDLALFGRMVADNPDLNVDASSQVAHAISTHEITPEFDFYTAVDDVKKEGSSGSAMLGTIEYNSSTLYRYANVNVLDLMHNLGNEDLTLEGIKLFIKEFIMTMPTGKENTFANKTLPQYVMVNVRDDTPVNLVSAFETPVESKGGYVQKSINRLKDEYNRTLKYVDKPAFDIELADSDKKIVDKQAKSVTDLIDQTAEFIKQELNNEDSND
>NZ_CP009907.1|WP_025283738.1|897397_898039_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MDNKITQVTMRVINELYHNGDPDKAALANLRRTLSITDKGAEKIWPLIFQAVGKNNQHLLSTSNVPSRFEIAIYTALHCYAMFQQGSDAFVFGRIPYKKEDQLNENEQVEEKGVSLFTALKQIKDNDDKIKTALDRRVTALLATTNAASAINSINHLVNILKGKNLVKKVDFAQLAADLYSFQYSSQQARAVALKWGRDYYWNVYQLETTDKD
>NZ_CP009907.1|WP_172644363.1|896437_897379_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLADYDKNELETQLCQKPVWEYDDINEYIQQRLSGMFPDNLAELYTVWSRMLHIEWKNEQPTIFSAGLPKLDNKNIFLEPMTTWRKNKDNEEFPATRNKNHLNEAIWRNFGQYIKVKKEGNYRVPGIINWINKLKSEKILAKHDNVNVTTIAMISDGNATSQAPYAEVVDNMDAKADVLFDNTPDIARQWPTRIENEVLNTQKIATYFYWFAKEVSKLRGNDDKNSGWASKEVAQLYDKLNLPFYSWLASLKSNDDRDERVQEWRDNLNKIVAIQAGNIFRDATANEIIGRDKDNIFTSYNKLRRNVYVSLK
>NZ_CP009907.1|WP_052540947.1|894830_895556_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSQSQSFNLVSDPWIKVLKKDYNETEVSLIELFDNSSEYLQLSGDMKSQDLAILRLLLAILLSIYTRFDTDGNQYDWVDLDDEWRVIKIDEDDVKTIGRSLLKTWKTLYSQKNFSSKVAEYLEKYKSKFDLFGETPFYQVNATVYDQNVPENKQIVKGKGTVTVKQINRRISESNNTPSIFSPKTENEKNKINFAELARWLITYQNYTGVTDKTKVNAKNKFSVSPGWLYSINPVYIKGKD
>NZ_CP009907.1|WP_052540944.1|891864_894606_+|CRISPR-associated-helicase/endonuclease-Cas3
MQLSNKTLSLWGKKNVNDDNEKLWLPLIAHLIDTKNVINWLYNHWINDGQRHILQRNFEDEDIVQNLVKFLGYIHDIGKATPAFQIKQSYINNEDLDQNLVEKLLQNGFDGLDNSKINTSKTPHALAGEVILENNGLNESIGAIIGGHHGKPQEEYFDYEDQLNNWTSNYYQSDSGSETSVGANWKQVQNELINYGLGLCHFNNLEDIPDVTEPQAVILEGLVIMADWLASGEYLVKDNQRIPLFPLISVDQDFASINTDERYRQGISVWADLFDPWEPEVINNPQRVYKERWKITPRQIQEKMSETIGASLDPGIIIVEAPMGIGKTEIALTAVEQLAAKTGMNGLFFGLPTQATANAMFNRVDKWLSEIATDQKEKLQIKLMHGKAQFNEEYRNIPNADNIEDDSGSVVVNEWFNGKKSILSSFVIGTVDQLLLMGLKQKHLALRHLGMSGKVVVIDEVHAYDIYMDSYLEKAVQWLGAYHVPVIALSATLPVAKRNSLLQAYCVGKYGNKRFKTTNEDWKTCHSYPLLSILDGKTLKQVSDFSDELKNTSIEITRLNIEDSELIKTINQKISDGGVAGVIVNTVRRAQELARLAESKMPSDVNILVLHSAFLATDRRKLENKLQDAIGKNKKRPYKMIVIGTQVLEQSLDIDFDVMYTDIAPMDLILQRIGRLHRHQIQRPKKLEKPQLYIMGINEFGNYGDANESIYAKYLLTKTDYFLKDKVNIPSDISDLVQKVYSEITDSEIKNLRESKQIFEINQKKSKHKANGYQIEAPDDEETLHGWLDNDSGTDLKDSKAEAAVRDTKESIEIVLLYQDDKGFNLLNGQSIEDVYDNIIAQQLIRLPHALTINIDRSIEELEKITTKHFPQWKDSNWLKGSLALVLDKNKETEFNGYSVKYSRNLGLIYKKE
>NZ_CP009907.1|WP_172644352.1|888465_888675_-|peptidoglycan-binding-protein
MGTWYGKNYYNQATYNAVKNFQRRHGLKATGNVNLKTWQKMGFSKKSWYGIDSYVTPWLGKAEKLTSKQ
>NZ_CP009907.1|WP_052540965.1|905340_908166_+|MucBP-domain-containing-protein
MTIRTIAHKRLVVGEKKQRFGFRKTILGLCGAILGSTLLMADATNNAHTVYAAESDPDQAKSVQIDDNAAKEVAQTKADAAKDNGASTDVSKASAKTPVEAKGNEGTNTANGLNGKAGQPLAKKEVPQLNSSLKQYEKAGADKNQGADKNQGADKGATGTGADKSGSQLGSQTGTQGTGTGADKGAQVDKSAATAASRARNRRSVVQPMADDATSQTNLDGKTQYSSLNNAQILSFELNSQDSNAPTATGVNLTATYTQANLPQQFKNDGMTGDTFWLYSGADLLKKNVSITKHWANAGSINGRNVDFHETFHDFVAQNNPGADGISSITGVDKQNPYLILISSNAVDNIDVYNANFQETFWFTYSNDGSIVDITKFNQANAAQNNNQIFYFLSASLSSNNGGGSNRREYVQTKDAKTVVISKNPINDPSTGFTAPASTMGLTSVSGTNVPDGLVYTNTDPSGYQSHDGEDSNPYYYALQGGVTFADFTSNKPTLYLGAVPISDSNIPWWSHSNWWWHGNHNKNSDFLSFVTYSIFNNKKVNETINYVDQTGKIVAPSHTDHITFITVKAWNGNTTYYKFGSQENPTLDNAGKPDSSWIQADNAKFGAIDNPPVNGYKVISTTAPGSDLNRVAKQTVNEDSKDLEFTVTYAKNAPTITTEKKTVNETIHYVYKDGSKAVDDHVAKPLEFTRQVSTDAVTGAKTYGAWSADQSFDAVTSPELKGYTADKAQIDKQTVNGDSKDLEFTVTYTKNAPTITTEKKTVNETIHYVYKDGSKAVDDHVAKPVEFTRQVSTDAVTGEKTYGAWSADQSFDEVKSPAIKGYTPDQAEIGTQTVTGDSSNLDFTVVYTANRSSTPATPATPATPATPAKLNNLGQSTNPSKLVQNSNMASVRNKKQANENEMPQTSENNSQSQTMSFIGILLAMFGSLLGFLGIKKHRND
>NZ_CP009907.1|WP_172619750.1|908308_908485_+|hypothetical-protein
MLENQQSIVALDHPKRPKKSRPPRNSLMLSLKKNDLELNFYSSLDPDVLNKILSKVLS
>NZ_CP009907.1|WP_143441508.1|908478_908829_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MMINLYDLGQVYIVCGRTDMRRGIDGLAAIVKDEFDLDPFSGRVFIFCGGSRDRFKALYWDGQGYWLLYKRFENGKMIWPNNQDEVKALSKEQVDWLMKGFSIEPGIKATNARNFY
>NZ_CP009907.1|WP_052541609.1|908868_909099_+|transposase
MREILMIRAETKDEIIKGLMTTINNLNEEISLLREQVAYLTQKRYGKSSEQTPLSGQTSLFDEENFAGDEDEDLPC
>NZ_CP009907.1|WP_003627959.1|909073_910411_+|IS66-family-transposase
MKTRIFPVETEEIAYRRRRRKAKRANVLKAFASEEIHHQLTGKDLLCPDCQQEMKEIGSCPVRQELLFIPAQIKRLDHIQHAYKCQCCSLKNTSDKIVKAPVPKAPLAHSYGSASVIAHTIYQKYELKVPAYRQKNDWQKMGLPITRRDIINWQIKSTEYYFKPLYQLLKKKLLEQKFLHADETTYRVLESKTQKTFYWTFLSDKQAEKPITLYHHNPHRSGQVAIQFLGNYAGYLHCDMWQAYGQLAQATLVGCWAHVRRKFFEAVPPKASDKSISKQGVRYCNRMFALEKDWGNLSNEERLRLRRKKLAPLMREFFNWCRKQKTRTLPNSKLGKAIAYSLNHEETFKHVLLDGRLVLSNNLAERAIKSLVIGRKNWLFSQSFNGAQSSAIILSLIETAKRNGLDPEKYLVYLLSNLPNESTLTDKEALSAYLPWEKAAQANCR
>NZ_CP009907.1|WP_023192018.1|914370_915603_+|MFS-transporter
MTHKKSFFSWWIFIVCCFISMIGFGLLVNTIGLFFGPISQEFNVGRANVALMTTFQNAAAAIALLFAGKIMEKVNLRWLLTACFALITVSMLSLTFANSLVHFYLAWTIIGICQPIAITLSIPVLLSKWFNQKLGTVMGISLGLSALGGTIFNPIIAEVIKQFGWRGGFVGEAMLIGLILVPLAISIKPEPTTQYPAYGKAMRSSKKVALTGLSLKQALKMPVFYAVAFAMLALQFVSGSVQHISGHITNIGISPITAATVVSGVMIGAAIGKISIGYFLDKFNTKLVLAVYSLFGVIGWGGQAMLRESNLLILAAVILGLGQGVCLVALPYLIRQIFGEKDYSNILSVINMIGAFAMSASVYLIGLFFDQTGSYNLGWMINVSAFALSFIVIMITLGKKESANSDLENS
>NZ_CP009907.1|WP_080890046.1|915878_917108_-|IS110-like-element-ISLhe4-family-transposase
MMKQNIIFGIDVSSKSSTVCVVIDRIKQGETFKITNDSFGYQDLLDRLNQYLITPLVVFEATGVYSLSLQAFLEDYHIKYLKLNPLKAKKLMDNNLRHNKTDKVDAYRLALIQFNAPQKLRAPQPKEYHELQNASRYYEELTQALIINKNQLHRNLQSTFPQIESILSTSSGRVYWTIVSLFPHAQYVLNHNENQVFQSLLAISGIGRQRAHYLTTRLYALARQAYPYDNESSITIRAIQRNIANLLSLSAERDNVINYMEKLAMQANARSLTIYESIPGIAKTTAVRLVAELGDLRRFDTSAQIDAFVGIDPGRYQSGEKDSHLGITKHGNHLARKILYRTITQMETVKATQPCHITDYYDKKKRSSNSRGYKKIAIASVHKLIRTMFALIKHDQLYDYNVATHNQRL
>NZ_CP009907.1|WP_052540970.1|917345_918605_-|ISL3-family-transposase
MSSLNHCIKFELDIKDKNIVFKDYFYKSIKLQKHKIYEAELIQPACPFCGSLDLLHNGHLIANIRYPTANASLPVIIRLAKQRVKCRDCDHWSMAQSELVNKYCSISNASKPKILSALTEDRSMTSIARENNVSINTVQRVLGNCSHRFIDSYEYLPAHLAFDEFKGVDRQLHFICLDGDNHQVVQILRTRYKKNLLKYFGRFSPQARANVRTVTMDLNFYYQDIVRACFPNAQIVIDRFHMIQMLTRSFNSLRVQVMKTFDKRSRQYQLLKSPWKLYLKKFDELEKVHPRYNWHYKDCLTQAQVVTEGINTSTTLENSYNLMQSFIQAFETGNTHELKSLINCQDQIGTLMHKTLLTFKHNLTAVLNGAALPYSNGCLEGFNRKIKQIERTAFGYSNFTNLLTRIRLEEDLYKENILT
>NZ_CP009907.1|WP_052541610.1|918840_920019_-|IS256-family-transposase
MNDFTKNMAQALFNQDKINDLLRKELQQAVNDLLEAELTAFLGYDPYARAGWNTGNSRNGAYFRKVDTQFGEIEIQVPRDRNGMFHQHTLPDYKQHSDVLESMIIKLYSKGVTTREIADLIEKMYGSHYSPAQVSNISKQMIPKVEAYHQRKLSDKFFCVYLDATYIPLRRITFDREAVYIAIGIKPNGHKEVIDYRIAPSENVENWTEMLQDMKSRGLEQVELFLSDGVVGMKTALEQTYPKAHFQRCLVHVMRNICAKVRVDDRETIMNEFKQIHQQPNKEAAIKVLHAFYDKWNRAYNHVIRNLKEIEPDLLVFYSYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDTFIGIQAMSYNERYFNRIHKGFGQVQDTLESYFD
>NZ_CP009907.1|WP_052540973.1|920180_922802_-|cation-translocating-P-type-ATPase
MKQYYLQTKAKVLEELKTSSGGLSSQQAKDNLAKYGKNALIEGKKKTTLQVFLEQFKDLMVIILIIAAVISAFTGELESTLVIIAVLILNAILGTVQHIKAEKSLESLKSLSSPSAKVLRDGKKIEIDSKDVVPGDIMLLEAGDMVTADGRILDNFSLQVNESSLTGESTNIDKADVEFDHEMPLGDRINMVYSSSLVTYGRANVVVTATGMNTEIGKIASLMNETKERRTPLQISLDKFSSKLATAILIICAIVLGLQIWRGQPIMDALLFAVALAVAAIPEALSSIVTIVQAMGTQKMAKENAIIKNLAAVESLGSVSVICSDKTGTLTQNKMTVQDIYIGGKTLKPNQLNLDNQLHRYLLYDAVLNNDSSLVDGKGIGDPTEYALLEMYRQVPGIDLGDKGLGISEEDLRGLLTRKQEVPFDSDRKLMSTKHLIHTVPTIFVKGAIDVLLDRCVNIRLDDEVRPITEEDKKQILAQNQHFSENGLRVLTFAYKESDEDLTPETENGFTFIGLVSEMDPPREESIEAVARAKKAGIRTVMITGDHKVTAVAIAKKIGIFNDGDMAVTGLELDKMSDEELEQKIEKIAVYARVSPENKIRIVNAWQKKDHIVSMTGDGVNDAPALKKADIGVAMGITGTEVSKDAASMILADDNFATIIKAVAIGRTVFENIKNAIMYLLSGNLSAIITVLFASIGGFSVPFIAVQLLFINLVTDSLPALAIGMEPGSPDVLSRKPRDPKVGILNKSLVNKVGLQGLIIAVGVITAFMIGRQTSPAVACTMAFSTLTFARLLHGFNCRSQHSIFKIGFKKNWYSLAAFAVGTLLLALILFVPALHGLFAVTPLTGNQLLWIIGLAVIPTVIIQIVKVVNENR

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Crispr_ID: NZ_CP009907_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009907_4

1799161-1799340

TypeV

Consensus_repeat	Method
ATGTGGGATTTGAACCCACGC	PILER-CR

2 spacers

cas14j

The CRISPR arrays of NZ_CP009907_4

>merge|NZ_CP009907|4|1799161-1799340|PILER-CR
ATGTGGGATTCGAACCCACGCATGCTGGATCCACAAACCAGTGTGTTAACCCCTTCACCAATTCCGCCATAAACGGTCCATGTGGGATTTGAACCCACGATCTCCTCCGTGACAGGGAGGCGAGATAAACCACTGCTCCAATGGACCAATCAGAGGAGGATGTGGGATTTGAACCCACGC

>NZ_CP009907|4|3|1799161-1799340|PILER-CR
ATGTGGGATTCGAACCCACGC	ATGCTGGATCCACAAACCAGTGTGTTAACCCCTTCACCAATTCCGCCATAAACGGTCC
ATGTGGGATTTGAACCCACGA	TCTCCTCCGTGACAGGGAGGCGAGATAAACCACTGCTCCAATGGACCAATCAGAGGAGG
ATGTGGGATTTGAACCCACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009907.1\|WP_023191727.1\|1785051_1785513_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP009907.1\|WP_003633061.1\|1806245_1807208_+\|ketopantoate-reductase-family-protein	unknown	unknown	gnl\|CDD\|235821
NZ_CP009907.1\|WP_003626890.1\|1808665_1810018_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP009907.1\|WP_052541473.1\|1794613_1795942_+\|uracil-permease	unknown	unknown	gnl\|CDD\|236744
NZ_CP009907.1\|WP_052541471.1\|1794070_1794601_+\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	unknown	unknown	gnl\|CDD\|235365
NZ_CP009907.1\|WP_172644369.1\|1796863_1798093_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP009907.1\|WP_020829061.1\|1786515_1787184_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP009907.1\|WP_052541467.1\|1789872_1790955_-\|M42-family-peptidase	unknown	unknown	gnl\|CDD\|349906
NZ_CP009907.1\|WP_003626893.1\|1811796_1812138_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_052541479.1\|1810383_1811760_+\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
NZ_CP009907.1\|WP_052541463.1\|1785654_1786473_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270407
NZ_CP009907.1\|WP_052541477.1\|1799507_1800008_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009907.1\|WP_046813927.1\|1801339_1801786_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_003633053.1\|1812320_1813025_+\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP009907.1\|WP_052541465.1\|1787197_1787869_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009907.1\|WP_003626855.1\|1788145_1789768_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NZ_CP009907.1\|WP_003633063.1\|1805048_1806227_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181219
NZ_CP009907.1\|WP_003626886.1\|1804236_1805028_+\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
NZ_CP009907.1\|WP_052541469.1\|1792309_1793779_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
NZ_CP009907.1\|WP_003626883.1\|1801996_1802200_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197

Protein	Function_ID	Function_description	E-value
NZ_CP009907.1\|WP_023191727.1\|1785051_1785513_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	1.23933e-06
NZ_CP009907.1\|WP_003633061.1\|1806245_1807208_+\|ketopantoate-reductase-family-protein	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	3.31665e-66
NZ_CP009907.1\|WP_052541473.1\|1794613_1795942_+\|uracil-permease	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	2.4626e-144
NZ_CP009907.1\|WP_052541471.1\|1794070_1794601_+\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	1.23819e-97
NZ_CP009907.1\|WP_172644369.1\|1796863_1798093_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.10426e-46
NZ_CP009907.1\|WP_020829061.1\|1786515_1787184_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	2.46916e-54
NZ_CP009907.1\|WP_052541467.1\|1789872_1790955_-\|M42-family-peptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	3.04822e-101
NZ_CP009907.1\|WP_052541479.1\|1810383_1811760_+\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	8.18159e-109
NZ_CP009907.1\|WP_052541463.1\|1785654_1786473_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.65496e-76
NZ_CP009907.1\|WP_052541477.1\|1799507_1800008_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.84686e-13
NZ_CP009907.1\|WP_003633063.1\|1805048_1806227_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181219	PRK08068, PRK08068, transaminase; Reviewed.	0
NZ_CP009907.1\|WP_003633053.1\|1812320_1813025_+\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	3.38874e-49
NZ_CP009907.1\|WP_003626855.1\|1788145_1789768_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP009907.1\|WP_003626890.1\|1808665_1810018_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.42181e-157
NZ_CP009907.1\|WP_003626886.1\|1804236_1805028_+\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.29822e-143
NZ_CP009907.1\|WP_052541469.1\|1792309_1793779_-\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.4283e-46
NZ_CP009907.1\|WP_003626883.1\|1801996_1802200_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	5.8942e-35

>NZ_CP009907.1|WP_172644369.1|1796863_1798093_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MFGIILKRKEGTNVLKGIKLRLYPNRTQQNQLEQMFGNDRFVWNQMLAMMNERYQNNKALPFLGKFKLNYLLKPLKKEYPFLKNSDSSSLQVVNEFLTQSWKNFFQDKSGQIGKPRFHSRKYLKKSYTGKSIIKTAGKRYLKIPKLGYVKTSKTGVLQNTKVKRYTVVLEPTGKYYLSLQAEIPEPEKYSLTDKQVGIDVGVADLAILANGLKYPSFNSSYFEKKAKVWQRKYARRRHLAKLLVLQDRNKKVLCPRSLESFTNWQKAQKSKAKCQAKAANQRRDYLHKLTTHLVKQYDVIAIEDLKTKNLQKNHHLAKSIANASWRMFRQMLEYKCEWYGKKLIAVDPKNTSRICSKCGYNSGAKPLEIREWTCSKCQTKHDRDINAAVNILHKGSTKLNGQGLAMVTS
>NZ_CP009907.1|WP_052541473.1|1794613_1795942_+|uracil-permease
MSKKENFRNPDAILDVYEKPEFGQGVLLSLQHTFAMFGSTVLVPILIGINPSIALLSSGIGTLVHMILTHFKIPAYLGSSFAFVATMQALMKADGYPAVAQGAIASGLVYVIVALIIAKVGSGWVNKVLPPIVVGPIIIVIGLSLATTAANDAMMNNQKYDLTYFGVAIFTLVMTLVFQMCFKGFTSLVSIMLGIICGYVLACFLGIVDFSGVEKAAWFSIPSLDVMGISYHFKWYPAAILAMAPIAFVTMTEHMGHIMVLNSLTKRNFFKNPGLHRTMMGDGISTIIAGFIGGPPTTSYGENIGVLAMTKVHSVWVLAGAAVCAIIFSFVGKLAALIESIPMPVIGGISFLLFGTIASNGLKILVDDNVDFGEKRNMLIASVILVIGIGGAYLQLGNFQLTSVALSTIIGMILNWVLPKKAASEKALEEKNKQKQDGKIYQ
>NZ_CP009907.1|WP_052541471.1|1794070_1794601_+|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR
MAKEIIDAIGMKRALMRMTYEIVERNKGTENLILVGIKTRGLYLAQRIAANLKKLEDVEISVGAIDVLQYRDDLPESKKEKMIHNQQLDFDITDKNVVLVDDVLFTGRTIRAALDALMDQGRPAKINLAVLVDRGHRELPIRPDFIGKNIPTAMNEEVKVSMTEVDDKDSIELINK
>NZ_CP009907.1|WP_052541469.1|1792309_1793779_-|MFS-transporter
MNKKQLFMVTLALLLANIMSGLDATIINTAIPAIVSDLHGIQYMGWIVACFLLGMSVSVPIWGKLGERMGNKFAFELSLALFILGSLLEGIALDIYFFLIARILMGVGAGGMGSLPYVIVGYIYPNIKRRTVILGYIAASFSAASIAGPLVGGWIVDTLSWHWVFYINVPLGLIAIILSFVYYKGIRKPNKNTQFDKLGAFTLIAGLTSFLIGIQLLGMVSLPVVLGFIILSILLLVVFIRAERKAKSPVVPLSVFTNKALVGDFLIFALAWGSSIAVNTYLPMWAQTILGASALVGGMTLIPNSIVDIVGSQTAPYFLRHVNNYRLLIANLTIMAITAVGLILAPISTPYQILALIAAFSGFGVGSIFVILQIKVQVDASEKDMAPATSLSFLIRILALTIMAAIYGVIMNLALGRGIAGHPGITMTMMNKLSDAESAKSLPVQLLPTMRKIFYGGIREIMIVSLVLLVAAYVVNYLYNRHEAKIMAE
>NZ_CP009907.1|WP_052541467.1|1789872_1790955_-|M42-family-peptidase
MQKEQEIQMLKEFSDANSTSGFEEEFVKLFTSYAEKTDNIEVDGMLNVYASKKENKGDRPVIQLDAHSDAVGFITQAVRPNGLIKFVPLGGWVKYNIPALKVKVRNRDGEYIPGVVATKPPHFMTAAERNNVPDVVDMSIDVGSSSREETIKDYKIDTGCPIFVDVKCEYHEKSGLFFGKDFDDRFGAGAMIDVLDNLKGEETNFDVVAALSSQEEVGLRGAYVTARKVKPDLCLVLESCPADDTFTPDWLSQTGLKRGPMLRDMDTTFLPNPKFQQYACDLADKNNIPYTRSVRTGGGQDGAAIYYENGAPTIVIGIPVRYEHSPYCFSSYKDFKASVDLATAIIRDITQEKLDSFKKF
>NZ_CP009907.1|WP_003626855.1|1788145_1789768_-|ATP-binding-cassette-domain-containing-protein
MITVSDLSLKFGGRTLYEDVNLKFTPGNCYGVIGANGAGKSTFLKLLEGKLEPTTGSISIDPNERMSSLNQDHFAFEDFTVMDTVIQGHKELYQVMKEKDALYAKPDFGDEDGVKAAELESKFAELDGWNAEANASKLLQSLDIPESEHQMLMKELPESEKVKVLLAQALFGNPDILLLDEPTNGLDVHTVEWLENFLADYPNIVIVVSHDRHFLNQVCTEMCDVDRGKIQLYVGNYDFWYESSKLANELVANQNAKKEEKIKQLQEFIARFSANASKSRQATSRKKQLDKITLDDIKPSSRKYPFVKFEMHRDLGNDLVKVENVSYSVDGEKILDNVSFIVRPGDKVAFLSRNALATTALLDIIAGKIKPDTGTVTWGQTTAFNYMSRDLNANFNNDDLTILDWLRQYATKEQDDNTFLRGFLGRMLFSGEEIEKKIKVLSGGEKVRCQLSRMMLEPANVLIMDDPTNHLDLESITALNDALVAYPGSILFTSHDHEFIQTIANHIIEVGPKGIVSRQDTTYDEFLDKESIQDQVEKIY
>NZ_CP009907.1|WP_052541465.1|1787197_1787869_-|hypothetical-protein
MDNLPFSSVTGKLDNIPFNYDHAGTKEVVVNNVIGDYFNPVTKKYEISDHTFVVGHIKDSNLDQDIAIEQMQQAAMNIINELNKRQMPPHMVMPHLLTDVEKAKQVVTDDDVKISQLSKETGISEEILSDYRENPATLKKASNSTIERLITKYYEKYFNRNEIEKFRFMLIKTVMAYLKENKKDEIDYDPVYELYKLCQQADWHRLARMEEIWRAFYTVDNQH
>NZ_CP009907.1|WP_020829061.1|1786515_1787184_-|type-1-glutamine-amidotransferase
MRVNVLQHAPNEGPGSIQDWCHEHNHEMFVYYPTDFGILPTIDETDLLVILGSPNSPNDKLDWIKNERVLIKQMLKANKPILGICFGSQQSAKTLGYEVLDAPAKEVGWAPVYLQDHTIENIPKKLTALHWHQQMSEIPEDAKLLFSSDLVKNQGYLLGNNVIGLQFHFEPKEDNVREIAINDGAYALENNDLHQTPQEIIAHGVPKENKDVMFVLLDYITK
>NZ_CP009907.1|WP_052541463.1|1785654_1786473_+|transporter-substrate-binding-domain-containing-protein
MKKRFFLSTLLIGIALFTLSACSQNKKQNVYQTVKSTKTINWGVKADTPLFGSMNIKTGKINGFEIDLAKALTKEMLGKNAKANFVTTTANTKIQLLKNRNVDAVIAAMTITPEREKQVDFSKPYFPAGQSIMVAKNSKIKNVKDLNNKKVLVVKGTTAADAVKKFAPKAEILQFDDYGQAFAALKAGQGDAFVTDNGILVGILRDSSGYKLVGGNFNNQPYGIAVNKGQTEMDKQINLALTKLEKDGTYNRLLKKWFGNIPGFNVKTAEKY
>NZ_CP009907.1|WP_023191727.1|1785051_1785513_-|MarR-family-transcriptional-regulator
MKISESEKLNMAIVHGNRAYQQWDQDHELSDYLSVILYELLLRKKLTQKQLIGLTDLPKQSINKGIKILHDSGYLAMSVDPHDKRVRFCELTAAGNKYAKQKMQSLFRLEEQTAQKLGSEKMQLLTDLLTEWSNTFWDFLNEERSKECKHSKS
>NZ_CP009907.1|WP_052541477.1|1799507_1800008_-|GNAT-family-N-acetyltransferase
MIIKPLISEDEAKETSRLFQKCWQNTYKDILPDVFLDNIPENAWVKRLNESGRHNLIFIDDDNKIRAAVGYGRPRDTRMLGCGELMALYVEPDFQGFNIGKTLLNAAENELKKMGYGKIYLWCIDGDENARQFFEHFGWVNNATEKFVEIAGKEYKYLLYQKNLHD
>NZ_CP009907.1|WP_046813927.1|1801339_1801786_-|hypothetical-protein
MINNWVSSSKELQLLVDDYLLTVNYRSVIENDLVNYTQGIESYFRNERLTLRDKINKFIEELPESYRELLSEHVGNTDDWIGKLVSTRVFLTHGDRENMAVSNPYKLVQMTKIFGFMVRIFILQKLGITIDKPKILNKFKNVLTAHYY
>NZ_CP009907.1|WP_003626883.1|1801996_1802200_+|cold-shock-protein
MQTGTVKWFNADKGFGFITGSSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQGSRGPQATNVVPQ
>NZ_CP009907.1|WP_003626886.1|1804236_1805028_+|carbon-nitrogen-family-hydrolase
MQMKIKVALAQFNIQFADPDKNQQRVAELTSIAAKAGADVIVFPEMWNIGYALNQLDRLADDGGRTTTKLFYRLARQYQISIVGGSVAVKEGGHFYNRTLIVDPLGQVVGKYDKVHLFRLMNEHRYLTAGNQENYFRLAGVPSASFICYDLRFPEWIRTVARHGSAVLYFPAEWPAVRIPQWTTMLKARAIENQAFVVAVNRVGDDPDNHYNGHSLAIDPLGNVIADAGENDGITYAELDLTQLATVRGAIPVFVDRRPDLYK
>NZ_CP009907.1|WP_003633063.1|1805048_1806227_+|pyridoxal-phosphate-dependent-aminotransferase
MEFQQSKLLGRLPKQFFASLVAKVNHKIESGVDVINLGQGNPDKPTPEYIVKATQKWVADPATHKYSPFQGLPEFKQAAADFYAEKYGAPFDPEKEVAILGGSKIGLVELPWALMNPGDTYLLPDPGYPDYFSGAALGGVKFETVPLLAKNNFLPDLKAIPEAVAQRAKFFYLNYPNNPTGAVATKKFYEELVSWAKKYHVGIISDFAYGALGFDGQAPRSFMQTPGAKDVGIELYTFSKTFNMAGWRIAFAVGNQDIIGALNLIQDHLFVSLFPALQRAAIDALQGSQRDAEIAKIVGRYEERRNAFVDAAEKIGWHAFVPKGTFYAWMPVPAGYTSESFADLLLDKAGVAVAPGNGFGKHGEGYVRIGLLIEPARLKEAVARIAKLHLFD
>NZ_CP009907.1|WP_003633061.1|1806245_1807208_+|ketopantoate-reductase-family-protein
MTLKYTVLGAGAMGLRFGVLLQELAGAKVDFVDNWAPEVKTIQQQGGVYVSRDHEDRHLVPIKIYSPEDYQGDPDVFIVFAKQMTLADLLKRSAHFFHPDHQYVFSGMNGMGHIEKINQYFPKEHVVAGTCLIGTVLNKAGDVDFIGKSGAGSINMAAQTEKADDRVKQIVADFTAANINPHLNNNFLGTLLTKVVFNSVINTICTLFEIQMGQFIDYDGSEKLGKQLINEAYDVAERAGIQLLSTREEEWQTIKYVSSVTNPLHYPSMYQDMSKDRPTEVDYINGYIYQLGKKYNYEASTHDFLRNLVHLAENTRKFRK
>NZ_CP009907.1|WP_003626890.1|1808665_1810018_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MEKNQIIDLEITDLSYEAMGVAHYNGMTVFVTNALPGEVVSAKILKVKKNFAFAKIEKIKKESPDRVNVKLNQGVQSGLASLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQLEIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVRRSKSTGEMMVILVCLHKDFMQLPNVAAEVSQIPGVSGLILNHNPKKTNVILGPKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAKSGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSYEFNRIDPVDMFPQTPHVESVTVLERTEK
>NZ_CP009907.1|WP_052541479.1|1810383_1811760_+|Na+/H+-antiporter-NhaC
MKKEKVSFTESIIILIALLAILGISVIKFGLSPEVPVLFTVLLLTFWARFRGFTWKDVQDGIKEGIGVAIIPIFIFILIGALIGLWIKAGIIPSIMVLGFHLISGSFFVPSVFIACAIVGVAIGSGFTTISTVGIALFGIGASMNANPALVAGAIISGAVFGDKMSPLSDSTNLSSAVAESELFAHIKNMMWSTIPSFVVSLILFWILGNSGHMDPTKIERTSHVLQTNFSISWWAVVPIVFMLLCAWRKVPAIPTLFINIAATVIMIFVQNPHESVQSLNNLIMNGFVAKTSDASVNALLTRGGISSMMATVALIISTLSLGGMLMKFNVVQSAMEPLVKHLRKPGRLITVTILSGICINLFVGEQYLSVILPGRAFKPAFDKIKLSPLALSRVLEDGGSVINYLIPWGVAGSFAATTLGVPVLQFLPFVFFSLLSPVFSIISGFTGIGLKWVKDKK
>NZ_CP009907.1|WP_003626893.1|1811796_1812138_-|hypothetical-protein
MDKKYSDNEVRGERSSRPKQVEKQALTLSFTKNAWDKYRQLTGSQKTFIDRELDDLKFNQNRQKSKQVNAELDQVLVFEKNGAEIVITDIVYEPYRESKEHKKAQIRMEDMNN
>NZ_CP009907.1|WP_003633053.1|1812320_1813025_+|Bax-inhibitor-1/YccA-family-protein
MDNFSNPGRREIHDVSEVNGFLSKMYGYMGLSVLVSALAAFLTMTVFRSAVMQMPPAMMWIILFVPIGLSLGINFKATRNPVAGFVMLMILAVIYGFEFALLAGFYTQAQIGTAFVSSAAVFGAMAVFGTFTKKNLNNMGSYLSAALIGLLVAMVVNIFLRNSVASFVFSIIGVVIFTGLTAYDAQKMKAIYNNYGSQVSTNGLAVLGALQLYLDFVNIFLFLLQIFGMGGDRD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009907_2	2.1\|890330\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	890330-890362	33	NC_015603	Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequence	36917-36949	0	1.0
NZ_CP009907_2	2.1\|890330\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	890330-890362	33	NC_017468	Lactobacillus helveticus H10 plasmid pH10, complete sequence	21497-21529	0	1.0
NZ_CP009907_2	2.16\|891247\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891247-891279	33	NC_019782	Lactobacillus phage AQ113, complete genome	3851-3883	1	0.97
NZ_CP009907_2	2.23\|891674\|34\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891674-891707	34	MN692988	Marine virus AFVG_117M76, complete genome	11447-11480	6	0.824
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	283497-283529	6	0.818
NZ_CP009907_3	3.10\|903018\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	903018-903050	33	NZ_AP017384	Moraxella osloensis strain KMC41 plasmid pMOSL3, complete sequence	27820-27852	6	0.818
NZ_CP009907_2	2.4\|890513\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	890513-890545	33	NZ_CP040940	Cetia pacifica strain TB6 plasmid unnamed1, complete sequence	42535-42567	7	0.788
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	MN693165	Marine virus AFVG_25M308, complete genome	1860-1892	7	0.788
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NZ_KT897276	Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence	15740-15772	7	0.788
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NZ_KT897280	Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence	15691-15723	7	0.788
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NZ_KT897275	Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence	15762-15794	7	0.788
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NZ_KT897277	Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence	15740-15772	7	0.788
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NZ_KT897278	Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence	15691-15723	7	0.788
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NZ_KT897279	Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence	15691-15723	7	0.788
NZ_CP009907_3	3.6\|902774\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902774-902806	33	NC_049968	Bacillus phage DK2, complete genome	441-473	7	0.788
NZ_CP009907_3	3.6\|902774\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902774-902806	33	MN855765	Myoviridae sp. isolate 14, complete genome	12839-12871	7	0.788
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	NZ_CP016721	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence	40242-40274	8	0.758
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	NZ_CP016727	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence	40242-40274	8	0.758
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	MN694143	Marine virus AFVG_250M281, complete genome	11190-11222	8	0.758
NZ_CP009907_2	2.18\|891369\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891369-891401	33	NC_019749	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence	42771-42803	8	0.758
NZ_CP009907_2	2.22\|891613\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891613-891645	33	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	101722-101754	8	0.758
NZ_CP009907_2	2.22\|891613\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891613-891645	33	NZ_CP015957	Legionella pneumophila strain E9_O plasmid unnamed1, complete sequence	35336-35368	9	0.727
NZ_CP009907_3	3.1\|902469\|33\|NZ_CP009907\|CRISPRCasFinder,CRT	902469-902501	33	NC_027390	Proteus phage PM 93, complete genome	14949-14981	9	0.727
NZ_CP009907_3	3.1\|902469\|33\|NZ_CP009907\|CRISPRCasFinder,CRT	902469-902501	33	KT780304	Bacillus phage VMY22, complete genome	4828-4860	9	0.727
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NZ_LR130560	Escherichia coli strain MS14385 isolate MS14385 plasmid 6	1829-1861	9	0.727
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NZ_AP018564	Staphylococcus argenteus strain 58113 plasmid p2, complete sequence	58002-58034	9	0.727
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NC_017320	Shigella flexneri 2002017 plasmid pSFxv_2, complete sequence	2508-2540	9	0.727
NZ_CP009907_3	3.3\|902591\|33\|NZ_CP009907\|CRISPRCasFinder,CRT,PILER-CR	902591-902623	33	NC_021922	Shigella flexneri strain HN006 plasmid pSFyv, complete sequence	2508-2540	9	0.727
NZ_CP009907_2	2.8\|890758\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	890758-890790	33	NZ_MF580438	Enterococcus faecium strain E35048 plasmid pE35048-oc, complete sequence	19670-19702	10	0.697
NZ_CP009907_2	2.8\|890758\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	890758-890790	33	MH830362	Enterococcus faecalis plasmid p4, complete sequence	41748-41780	10	0.697
NZ_CP009907_2	2.8\|890758\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	890758-890790	33	MH830362	Enterococcus faecalis plasmid p4, complete sequence	85926-85958	10	0.697
NZ_CP009907_2	2.8\|890758\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	890758-890790	33	NZ_KY579372	Enterococcus faecium strain F120805 substr. faecium plasmid unnamed, complete sequence	665-697	10	0.697
NZ_CP009907_2	2.8\|890758\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	890758-890790	33	NZ_CP049777	Enterococcus faecalis strain ES-1 plasmid unnamed2, complete sequence	26402-26434	10	0.697
NZ_CP009907_2	2.23\|891674\|34\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891674-891707	34	AP018399	Xanthomonas phage XacN1 DNA, complete genome	124547-124580	10	0.706
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	NC_019436	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence	33996-34028	11	0.667
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	CP034574	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77D, complete sequence	23504-23536	11	0.667
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	NZ_CP016715	Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence	44693-44725	11	0.667
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	NZ_AP018503	Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence	2048-2080	11	0.667
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	NZ_CP016695	Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence	28603-28635	11	0.667
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	CP029293	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6	24756-24788	11	0.667
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	NZ_CP051520	Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence	14804-14836	11	0.667
NZ_CP009907_2	2.13\|891063\|33\|NZ_CP009907\|PILER-CR,CRISPRCasFinder,CRT	891063-891095	33	NZ_CP016688	Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence	28610-28642	11	0.667

1. spacer 2.1|890330|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NC_015603 (Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequence) position: , mismatch: 0, identity: 1.0

catatctggatcgttaagttgacgagtaccagt	CRISPR spacer
catatctggatcgttaagttgacgagtaccagt	Protospacer
*********************************

2. spacer 2.1|890330|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NC_017468 (Lactobacillus helveticus H10 plasmid pH10, complete sequence) position: , mismatch: 0, identity: 1.0

catatctggatcgttaagttgacgagtaccagt	CRISPR spacer
catatctggatcgttaagttgacgagtaccagt	Protospacer
*********************************

3. spacer 2.16|891247|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 1, identity: 0.97

ttctattgatacttctaaatttgacatgacttt	CRISPR spacer
ttccattgatacttctaaatttgacatgacttt	Protospacer
***.*****************************

4. spacer 2.23|891674|34|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to MN692988 (Marine virus AFVG_117M76, complete genome) position: , mismatch: 6, identity: 0.824

tata-agaaccaactcctactcctacagctactgc	CRISPR spacer
-atactgcaccaactcctactactacaactactac	Protospacer
 ***  * ************* *****.*****.*

5. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 6, identity: 0.818

taaaagtc--aataaatattacaaaaataatttca	CRISPR spacer
--agtgtcataataaatataacaaaaataatttct	Protospacer
  *. ***  ********* **************

6. spacer 3.10|903018|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017384 (Moraxella osloensis strain KMC41 plasmid pMOSL3, complete sequence) position: , mismatch: 6, identity: 0.818

-taagtcaatagttttatgatttttttgtaaaaa	CRISPR spacer
ttgaattaa-agctttatgatttttttataaaaa	Protospacer
 *.*.*.** **.**************.******

7. spacer 2.4|890513|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040940 (Cetia pacifica strain TB6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

taaaaatattagattaattgataacttgaacaa----	CRISPR spacer
taaaaatattatatttattgataa----aacattata	Protospacer
*********** *** ********    ****

8. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to MN693165 (Marine virus AFVG_25M308, complete genome) position: , mismatch: 7, identity: 0.788

tctacagatgtttcagcagataaagttaatagc----	CRISPR spacer
tctacaaatggttcagcagataa----aatatcatct	Protospacer
******.*** ************    **** *

9. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT897276 (Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence) position: , mismatch: 7, identity: 0.788

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
cagaaaactataaatattaaaaaaataatatca	Protospacer
.*.**. * ********** ********* ***

10. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT897280 (Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence) position: , mismatch: 7, identity: 0.788

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
cagaaaactataaatattaaaaaaataatatca	Protospacer
.*.**. * ********** ********* ***

11. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT897275 (Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence) position: , mismatch: 7, identity: 0.788

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
cagaaaactataaatattaaaaaaataatatca	Protospacer
.*.**. * ********** ********* ***

12. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT897277 (Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence) position: , mismatch: 7, identity: 0.788

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
cagaaaactataaatattaaaaaaataatatca	Protospacer
.*.**. * ********** ********* ***

13. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT897278 (Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence) position: , mismatch: 7, identity: 0.788

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
cagaaaactataaatattaaaaaaataatatca	Protospacer
.*.**. * ********** ********* ***

14. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT897279 (Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence) position: , mismatch: 7, identity: 0.788

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
cagaaaactataaatattaaaaaaataatatca	Protospacer
.*.**. * ********** ********* ***

15. spacer 3.6|902774|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NC_049968 (Bacillus phage DK2, complete genome) position: , mismatch: 7, identity: 0.788

-caactccgccaataaataattttctcatttttc	CRISPR spacer
gctatacca-caataaataactttttcatttttc	Protospacer
 * *. **. **********.***.*********

16. spacer 3.6|902774|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to MN855765 (Myoviridae sp. isolate 14, complete genome) position: , mismatch: 7, identity: 0.788

caactccgccaataaataattttctcatttttc	CRISPR spacer
ccaaacccacaataattaattttttcatttttc	Protospacer
* *  **  ****** *******.*********

17. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016721 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence) position: , mismatch: 8, identity: 0.758

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ttttctgatagttcagcagataaagttaatgca	Protospacer
*.* * ***. *******************.

18. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016727 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence) position: , mismatch: 8, identity: 0.758

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ttttctgatagttcagcagataaagttaatgca	Protospacer
*.* * ***. *******************.

19. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to MN694143 (Marine virus AFVG_250M281, complete genome) position: , mismatch: 8, identity: 0.758

tctacagatgtttcagcagataaagttaatagc-	CRISPR spacer
cagacagatttttcagcagatgaagtt-tcagct	Protospacer
.  ****** ***********.*****  .***

20. spacer 2.18|891369|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NC_019749 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence) position: , mismatch: 8, identity: 0.758

taagcaattttgaagttagcgaacat---tttggcg	CRISPR spacer
agagtaattttgaatttagcgaacatcaattta---	Protospacer
 .**.********* ***********   ***.

21. spacer 2.22|891613|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 8, identity: 0.758

taatcgtctttaaattctaatattcctgtccaa---	CRISPR spacer
taatcatctttaaatactaatat---tgtttatatt	Protospacer
*****.********* *******   ***..*

22. spacer 2.22|891613|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015957 (Legionella pneumophila strain E9_O plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

taatcgtctttaaattctaatattcctgtccaa	CRISPR spacer
ttaaaagtattaaattctaattttcctgtcgaa	Protospacer
* *  . . ************ ******** **

23. spacer 3.1|902469|33|NZ_CP009907|CRISPRCasFinder,CRT matches to NC_027390 (Proteus phage PM 93, complete genome) position: , mismatch: 9, identity: 0.727

tataaaggctcgtaattttggctttattattta	CRISPR spacer
aataatggctcgtaattttgactttggtgcaga	Protospacer
 **** **************.****. *..  *

24. spacer 3.1|902469|33|NZ_CP009907|CRISPRCasFinder,CRT matches to KT780304 (Bacillus phage VMY22, complete genome) position: , mismatch: 9, identity: 0.727

tataaaggctcgtaattttggctttattattta	CRISPR spacer
tttgcgttctcctaattttggctttaatatttc	Protospacer
* *. .  *** ************** *****

25. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR130560 (Escherichia coli strain MS14385 isolate MS14385 plasmid 6) position: , mismatch: 9, identity: 0.727

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
ataccttcaataaatattactaaaatatttttt	Protospacer
  *   ************** ****** ***.

26. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018564 (Staphylococcus argenteus strain 58113 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.727

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
atttagtcaaaaaataatacaaaaataatagga	Protospacer
    ****** ***** ************   *

27. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NC_017320 (Shigella flexneri 2002017 plasmid pSFxv_2, complete sequence) position: , mismatch: 9, identity: 0.727

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
ataccttcaataaatattactaaaatatttttt	Protospacer
  *   ************** ****** ***.

28. spacer 3.3|902591|33|NZ_CP009907|CRISPRCasFinder,CRT,PILER-CR matches to NC_021922 (Shigella flexneri strain HN006 plasmid pSFyv, complete sequence) position: , mismatch: 9, identity: 0.727

taaaagtcaataaatattacaaaaataatttca	CRISPR spacer
ataccttcaataaatattactaaaatatttttt	Protospacer
  *   ************** ****** ***.

29. spacer 2.8|890758|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF580438 (Enterococcus faecium strain E35048 plasmid pE35048-oc, complete sequence) position: , mismatch: 10, identity: 0.697

caatgaaccataaagaagtagcagaattaagca	CRISPR spacer
attttgttgataaagaagtagcagaatttacca	Protospacer
   * . . ******************* * **

30. spacer 2.8|890758|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to MH830362 (Enterococcus faecalis plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.697

caatgaaccataaagaagtagcagaattaagca	CRISPR spacer
attttgttgataaagaagtagcagaatttacca	Protospacer
   * . . ******************* * **

31. spacer 2.8|890758|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to MH830362 (Enterococcus faecalis plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.697

caatgaaccataaagaagtagcagaattaagca	CRISPR spacer
attttgttgataaagaagtagcagaatttacca	Protospacer
   * . . ******************* * **

32. spacer 2.8|890758|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY579372 (Enterococcus faecium strain F120805 substr. faecium plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.697

caatgaaccataaagaagtagcagaattaagca	CRISPR spacer
attttgttgataaagaagtagcagaatttacca	Protospacer
   * . . ******************* * **

33. spacer 2.8|890758|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049777 (Enterococcus faecalis strain ES-1 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.697

caatgaaccataaagaagtagcagaattaagca	CRISPR spacer
attttgttgataaagaagtagcagaatttacca	Protospacer
   * . . ******************* * **

34. spacer 2.23|891674|34|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 10, identity: 0.706

tataagaaccaactcctactcctacagctactgc	CRISPR spacer
cagctacaccaactccgacacctacagctacacc	Protospacer
.*   . ********* ** ***********  *

35. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NC_019436 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence) position: , mismatch: 11, identity: 0.667

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ctgacagatgttgcagcaggtaaagttcgcgca	Protospacer
.. ********* ******.******* ...

36. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to CP034574 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77D, complete sequence) position: , mismatch: 11, identity: 0.667

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ctgacagatgttgcagcaggtaaagttcgcgca	Protospacer
.. ********* ******.******* ...

37. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016715 (Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence) position: , mismatch: 11, identity: 0.667

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ctgacagatgttgcagcaggtaaagttcgcgca	Protospacer
.. ********* ******.******* ...

38. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018503 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence) position: , mismatch: 11, identity: 0.667

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ctgacagatgttgcagcaggtaaagttcgcgca	Protospacer
.. ********* ******.******* ...

39. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016695 (Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence) position: , mismatch: 11, identity: 0.667

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ctgacagatgttgcagcaggtaaagttcgcgca	Protospacer
.. ********* ******.******* ...

40. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to CP029293 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6) position: , mismatch: 11, identity: 0.667

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ctgacagatgttgcagcaggtaaagttcgcgca	Protospacer
.. ********* ******.******* ...

41. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051520 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence) position: , mismatch: 11, identity: 0.667

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ctgacagatgttgcagcaggtaaagttcgcgca	Protospacer
.. ********* ******.******* ...

42. spacer 2.13|891063|33|NZ_CP009907|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016688 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence) position: , mismatch: 11, identity: 0.667

tctacagatgtttcagcagataaagttaatagc	CRISPR spacer
ctgacagatgttgcagcaggtaaagttcgcgca	Protospacer
.. ********* ******.******* ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 139863

114

Staphylococcus_phage(14.29%)

holin,transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003618609.1\|523_997_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_003625266.1\|1150_3436_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_080890045.1\|3413_4319_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_003625262.1\|5558_6635_+	hypothetical protein	NA	NA	NA	NA
WP_052540328.1\|6637_7195_+	adenine phosphoribosyltransferase	NA	NA	NA	NA
WP_080890046.1\|8874_10104_+\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	3.0e-65	38.1
WP_143441532.1\|10652_11042_+	hypothetical protein	NA	NA	NA	NA
WP_003630367.1\|10987_11530_-	biotin transporter BioY	NA	NA	NA	NA
WP_003625259.1\|11603_12593_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_020828945.1\|12640_13399_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_012212318.1\|13457_14228_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_052540330.1\|14220_15063_-	hypothetical protein	NA	NA	NA	NA
WP_012212319.1\|15043_16423_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_003625250.1\|16436_16853_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_012212320.1\|16857_17328_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_003625246.1\|17331_18561_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_025283971.1\|18582_19314_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	1.6e-13	30.0
WP_012212323.1\|19313_20231_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_003625239.1\|20240_20483_-	acyl carrier protein	NA	NA	NA	NA
WP_003625237.1\|20541_21525_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_003625235.1\|21521_21989_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_003625233.1\|22018_22465_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_002831196.1\|24167_24416_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_003630403.1\|27017_27905_+	EamA family transporter	NA	NA	NA	NA
WP_003625204.1\|29524_29848_-	hypothetical protein	NA	NA	NA	NA
WP_052540334.1\|30104_30854_-	DUF4430 domain-containing protein	NA	NA	NA	NA
WP_003630433.1\|31282_32329_-	hypothetical protein	NA	NA	NA	NA
WP_052540337.1\|34195_35590_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_035515559.1\|36419_37316_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_052540340.1\|37303_38968_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-20	31.0
WP_003630445.1\|38975_39686_+	ECF transporter S component	NA	NA	NA	NA
WP_052540342.1\|41257_42535_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.1e-09	20.7
WP_012212335.1\|42676_44026_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	7.0e-124	50.3
WP_155382003.1\|44678_45047_-	hypothetical protein	NA	NA	NA	NA
WP_052540344.1\|45177_45978_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.5e-12	28.6
WP_003625167.1\|45964_46801_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_172644373.1\|46776_47568_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_012212336.1\|47567_48170_-	hypothetical protein	NA	NA	NA	NA
WP_003625162.1\|48235_48652_+	hypothetical protein	NA	NA	NA	NA
WP_172644353.1\|49329_50586_-	OFA family MFS transporter	NA	NA	NA	NA
WP_052540350.1\|50856_51207_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_052540353.1\|52007_52958_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.5e-14	25.6
WP_052540355.1\|52965_53739_-	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_003630549.1\|55420_56233_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_003625108.1\|56235_56421_+	hypothetical protein	NA	NA	NA	NA
WP_003625106.1\|56514_57201_+	cobyric acid synthase	NA	NA	NA	NA
WP_079227881.1\|57261_58527_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.2e-52	43.0
WP_025284001.1\|58741_59224_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	5.4e-18	42.5
WP_052540358.1\|60272_60917_-	hypothetical protein	NA	NA	NA	NA
WP_003625080.1\|65232_65712_-	hypothetical protein	NA	NA	NA	NA
WP_003625077.1\|65809_66172_-	hypothetical protein	NA	NA	NA	NA
WP_052540366.1\|66240_67539_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.3e-18	33.5
WP_003625073.1\|67542_68832_-	adenylosuccinate synthase	A0A285PX35	Cedratvirus	2.3e-68	35.3
WP_035505223.1\|69042_70035_+	GMP reductase	Q4ZCY7	Staphylococcus_virus	1.4e-129	67.0
WP_003625069.1\|70471_71527_-	DUF871 domain-containing protein	NA	NA	NA	NA
WP_052540372.1\|71567_72425_-\|transposase	IS982-like element ISLhe7 family transposase	NA	NA	NA	NA
WP_023191449.1\|72946_73960_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	1.6e-64	41.7
WP_155382005.1\|74423_74729_-	hypothetical protein	NA	NA	NA	NA
WP_052540372.1\|74742_75600_-\|transposase	IS982-like element ISLhe7 family transposase	NA	NA	NA	NA
WP_155382007.1\|75679_75910_-	hypothetical protein	NA	NA	NA	NA
WP_041806158.1\|75977_76835_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_003630596.1\|77160_78534_-	amino acid permease	NA	NA	NA	NA
WP_003630598.1\|78569_79931_-	amino acid permease	NA	NA	NA	NA
WP_003630600.1\|80021_80786_-	hypothetical protein	NA	NA	NA	NA
WP_003625047.1\|80879_81521_-	signal peptidase I	NA	NA	NA	NA
WP_052540378.1\|81627_83751_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.1e-115	40.2
WP_003630602.1\|84034_84964_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_052540381.1\|84932_86258_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_052541604.1\|86346_87048_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-32	35.2
WP_003631513.1\|89609_89846_+	hypothetical protein	NA	NA	NA	NA
WP_052540388.1\|89991_90837_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_052540391.1\|90916_91789_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_052540393.1\|91888_93127_+	MFS transporter	NA	NA	NA	NA
WP_025284015.1\|93196_94396_+	YcaO-like family protein	NA	NA	NA	NA
WP_052540396.1\|94398_95025_+	hypothetical protein	NA	NA	NA	NA
WP_126963135.1\|94990_95467_+	hypothetical protein	NA	NA	NA	NA
WP_052540403.1\|95542_96157_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_052540406.1\|96195_97053_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.3e-50	38.9
WP_025284019.1\|97072_97930_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.7e-46	39.4
WP_003630810.1\|97948_98329_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_080890049.1\|99136_100753_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_003630618.1\|103206_103365_-	hypothetical protein	NA	NA	NA	NA
WP_035513724.1\|103416_103824_-	hypothetical protein	NA	NA	NA	NA
WP_052540412.1\|104150_104858_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_052540416.1\|104842_105106_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003625023.1\|105317_106262_-	serine hydrolase	NA	NA	NA	NA
WP_003625021.1\|106261_107548_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_003625019.1\|107540_107780_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
WP_023190737.1\|107838_109077_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	2.0e-24	27.4
WP_046814556.1\|109076_110591_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	A0A2K9KZV5	Tupanvirus	4.4e-34	28.4
WP_003630630.1\|110606_110759_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
WP_041809804.1\|110960_111257_-	hypothetical protein	NA	NA	NA	NA
WP_023190739.1\|111276_112413_-	hypothetical protein	NA	NA	NA	NA
WP_080890050.1\|113239_114499_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	3.5e-125	58.5
WP_003625007.1\|114887_116744_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.2e-68	30.6
WP_052540432.1\|116896_118066_+	cation:proton antiporter	NA	NA	NA	NA
WP_003625002.1\|118194_118503_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_004561119.1\|118489_118759_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_025284031.1\|118796_120365_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	3.2e-11	31.1
WP_052540435.1\|120369_121011_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_012212392.1\|121102_121960_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003624992.1\|121956_122238_+	hypothetical protein	NA	NA	NA	NA
WP_101871943.1\|122391_122487_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_003624988.1\|123329_123986_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_004561123.1\|124074_125178_+	YdcF family protein	NA	NA	NA	NA
WP_052540438.1\|127551_128160_-	ECF transporter S component	NA	NA	NA	NA
WP_004561127.1\|128266_129094_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.6e-23	28.8
WP_004561128.1\|129211_129931_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_052540444.1\|132100_133150_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	6.8e-50	35.6
WP_080890104.1\|133219_133459_-	hypothetical protein	NA	NA	NA	NA
WP_003624967.1\|133629_134277_+	deoxynucleoside kinase	Q5ULP7	Lactobacillus_virus	1.1e-47	47.9
WP_003624964.1\|134301_134988_+	deoxynucleoside kinase	Q5ULP7	Lactobacillus_virus	7.1e-56	50.6
WP_052540446.1\|136072_137380_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.1e-36	29.2
WP_080890105.1\|138639_139863_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	8.6e-121	58.0

DBSCAN-SWA_2

380640 : 443637

Lactobacillus_virus(15.0%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052540618.1\|380640_381903_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	3.0e-84	42.1
WP_003630682.1\|382324_382681_+	hypothetical protein	NA	NA	NA	NA
WP_023190539.1\|382986_384300_+	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	3.3e-62	33.0
WP_012211318.1\|384299_384953_+	HD domain-containing protein	NA	NA	NA	NA
WP_003630770.1\|385121_386744_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_052540620.1\|386818_388450_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003625557.1\|388606_389749_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-63	34.1
WP_003625558.1\|389923_390853_+	ABC transporter permease	NA	NA	NA	NA
WP_003625559.1\|390861_391893_+	ABC transporter permease	NA	NA	NA	NA
WP_012211321.1\|391908_392967_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-19	32.0
WP_003625561.1\|392987_393932_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.6e-21	33.3
WP_025283962.1\|394017_395400_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.0e-58	46.7
WP_052540623.1\|395468_396785_-	aminopeptidase	R4TV59	Phaeocystis_globosa_virus	2.3e-63	36.1
WP_003625563.1\|396925_397372_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_003630778.1\|397604_398066_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_020829427.1\|398154_398817_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003630784.1\|398977_399577_-	SOS response-associated peptidase family protein	NA	NA	NA	NA
WP_003625567.1\|399701_400724_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003625568.1\|400748_401228_+	hypothetical protein	A7KUY9	Bacillus_phage	5.2e-37	59.0
WP_020829426.1\|401217_401826_+	TPM domain-containing protein	NA	NA	NA	NA
WP_020829425.1\|402124_404788_+	magnesium-translocating P-type ATPase	M1HXH2	Paramecium_bursaria_Chlorella_virus	6.8e-38	24.6
WP_003625571.1\|404880_406857_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.1e-98	39.0
WP_052540626.1\|406856_407624_+	TatD family hydrolase	NA	NA	NA	NA
WP_003625573.1\|407610_408177_+	ribonuclease M5	NA	NA	NA	NA
WP_003625574.1\|408166_409042_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003625575.1\|409122_409380_+	Veg family protein	NA	NA	NA	NA
WP_003625576.1\|409480_410311_+	pur operon repressor	NA	NA	NA	NA
WP_052540628.1\|410357_411743_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	7.9e-30	34.0
WP_080890106.1\|412993_413995_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	4.8e-93	47.8
WP_020829421.1\|414312_415329_+	SLAP domain-containing protein	NA	NA	NA	NA
WP_052540634.1\|415464_416859_+	SLAP domain-containing protein	NA	NA	NA	NA
WP_020829420.1\|417099_418074_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	6.6e-47	36.8
WP_003630873.1\|419102_419378_-	hypothetical protein	NA	NA	NA	NA
WP_003625586.1\|419405_420770_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.4e-31	33.1
WP_003625587.1\|420883_421285_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003625588.1\|421331_421889_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
WP_052540637.1\|422007_423627_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	9.6e-136	47.2
WP_052540640.1\|423756_425052_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_080669042.1\|425404_425794_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_052540642.1\|425849_427274_-	C69 family dipeptidase	NA	NA	NA	NA
WP_012211345.1\|427354_428179_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020829418.1\|428278_429553_-	purine permease	Q9KX94	Enterobacteria_phage	1.1e-28	27.9
WP_003625603.1\|429556_430135_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_035504367.1\|430408_431011_-	hypothetical protein	NA	NA	NA	NA
WP_080890054.1\|431293_432553_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	5.0e-124	58.5
WP_003625610.1\|433052_433346_-	hypothetical protein	NA	NA	NA	NA
WP_003625612.1\|433388_433541_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003625614.1\|433737_435315_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	6.3e-23	34.1
WP_080890055.1\|435700_436930_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	5.8e-117	55.6
WP_003625618.1\|437720_438956_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.2e-101	53.2
WP_023190998.1\|442162_442357_+	hypothetical protein	NA	NA	NA	NA
WP_052540648.1\|442521_443637_-\|transposase	IS256 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

516795 : 668040

112

Streptococcus_phage(10.0%)

transposase,tRNA,integrase

attL 589037:589053|attR 641649:641665

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172644355.1\|516795_518025_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	1.9e-123	58.2
WP_003625853.1\|518493_521172_+	magnesium-translocating P-type ATPase	M1HJQ2	Paramecium_bursaria_Chlorella_virus	1.4e-43	24.8
WP_003625855.1\|521836_522679_-	sugar transporter	NA	NA	NA	NA
WP_003625856.1\|522822_524172_-	aminopeptidase C	R4TV59	Phaeocystis_globosa_virus	3.9e-74	36.1
WP_052540676.1\|524171_525929_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	2.3e-90	37.7
WP_080890057.1\|526292_527552_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.3e-124	57.9
WP_003625857.1\|527697_528000_-	hypothetical protein	NA	NA	NA	NA
WP_052540682.1\|528114_528972_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_003625858.1\|529105_529657_+	dUTP diphosphatase	J9PV85	Bacillus_phage	3.1e-38	48.6
WP_003631505.1\|529656_531033_+	DNA repair protein RadA	A0A2I7QPS8	Vibrio_phage	8.8e-05	24.6
WP_003625860.1\|531108_532608_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_020829388.1\|532700_534131_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.1e-45	29.2
WP_003625863.1\|534123_534567_+	hypothetical protein	NA	NA	NA	NA
WP_003631507.1\|534553_535306_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_052540684.1\|535448_535994_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003549087.1\|536069_536288_+	hypothetical protein	NA	NA	NA	NA
WP_003625869.1\|536399_537896_+	gluconokinase	NA	NA	NA	NA
WP_012211413.1\|539821_539971_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_003625881.1\|539978_540146_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_003625883.1\|540253_540811_+	transcription termination/antitermination protein NusG	F5B3X4	Synechococcus_phage	2.3e-12	31.3
WP_003625885.1\|540938_541364_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_003625887.1\|541446_542139_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_012211417.1\|544640_545507_+	phosphate ABC transporter substrate-binding protein	M1PR58	Cyanophage	4.2e-05	22.6
WP_052540696.1\|545510_546506_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_003625895.1\|546507_547395_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_003625897.1\|547405_548200_+	phosphate ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	1.0e-13	33.5
WP_003625899.1\|548201_548957_+	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.0e-15	27.5
WP_052540700.1\|548973_549651_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_052540704.1\|549798_551541_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.7e-88	36.9
WP_003625908.1\|553053_553566_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_052540708.1\|553616_553979_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_003631531.1\|554881_555511_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_003631532.1\|555500_556007_+	nucleoside deaminase	S4VYZ2	Pandoravirus	1.2e-07	39.5
WP_003631533.1\|556201_557989_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.0e-49	39.7
WP_003625916.1\|558021_558357_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_003631534.1\|558357_558957_+	recombination protein RecR	NA	NA	NA	NA
WP_003631535.1\|558956_559202_+	YaaL family protein	NA	NA	NA	NA
WP_003631536.1\|559305_559944_+	dTMP kinase	M1PSC7	Streptococcus_phage	3.6e-54	51.0
WP_003625920.1\|559955_560276_+	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_003625921.1\|560276_561134_+	DNA polymerase III subunit delta	M1NSC1	Streptococcus_phage	3.9e-19	29.2
WP_012211424.1\|561144_561495_+	DNA replication initiation control protein YabA	NA	NA	NA	NA
WP_052540711.1\|561496_562351_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.4e-64	47.7
WP_012211425.1\|562353_563088_+	acyl-ACP thioesterase	NA	NA	NA	NA
WP_012211426.1\|563130_563649_+	folate family ECF transporter S component	NA	NA	NA	NA
WP_012211427.1\|563673_564408_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_012211428.1\|564391_564964_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_023061461.1\|564987_566037_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.1e-50	35.2
WP_025283296.1\|566179_566272_+	hypothetical protein	NA	NA	NA	NA
WP_052541607.1\|567776_568964_-	CoA transferase	NA	NA	NA	NA
WP_155382015.1\|572016_574044_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	3.7e-60	30.7
WP_003625963.1\|574218_574866_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_003631546.1\|575005_575464_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_052540716.1\|575460_576207_+	hypothetical protein	NA	NA	NA	NA
WP_025283299.1\|578388_578682_+	hypothetical protein	NA	NA	NA	NA
WP_172644356.1\|578782_578950_-	hypothetical protein	NA	NA	NA	NA
WP_038525304.1\|579216_579756_+	hypothetical protein	NA	NA	NA	NA
WP_052540718.1\|579977_580994_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	7.6e-46	35.5
WP_052540720.1\|582954_587931_+	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	8.6e-18	27.5
WP_020829380.1\|588332_589070_+	hypothetical protein	NA	NA	NA	NA
589037:589053	attL	NA	NA	NA	NA
WP_052540723.1\|589066_590095_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.1e-47	34.9
WP_080890107.1\|590195_590804_+\|integrase	site-specific integrase	Q938N9	Temperate_phage	1.2e-30	42.3
WP_003627770.1\|591040_591325_+	co-chaperone GroES	A0A221S304	uncultured_virus	1.2e-12	40.7
WP_052540726.1\|591378_593001_+	chaperonin GroEL	A0A240F766	uncultured_virus	7.6e-157	54.0
WP_052540729.1\|593160_595758_+	DNA mismatch repair protein MutS	F2QAF7	Pyramimonas_orientalis_virus	3.5e-39	25.1
WP_025283302.1\|595757_597668_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	4.4e-55	29.7
WP_052540731.1\|597668_598259_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_003627765.1\|598307_599324_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	7.4e-09	32.5
WP_046813873.1\|599382_599808_+	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_052540734.1\|599941_601393_+	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	2.0e-63	32.5
WP_052540737.1\|601385_602507_+	DNA polymerase IV	A0A1P8CWP4	Bacillus_phage	1.4e-16	24.5
WP_052540740.1\|602566_603523_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_003627757.1\|603515_604877_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.7e-49	32.2
WP_003627754.1\|606197_608837_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.6e-63	33.0
WP_003627753.1\|608897_609155_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_003627752.1\|609154_609583_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_003627751.1\|609584_609896_+	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_052540743.1\|609959_612317_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	9.7e-20	48.7
WP_003627748.1\|612417_612729_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.3e-17	43.8
WP_003631683.1\|612772_613144_-	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_172644357.1\|613301_614531_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	1.9e-115	54.6
WP_052540748.1\|614674_615088_-	YslB family protein	NA	NA	NA	NA
WP_003627745.1\|615164_615968_+	glutamate racemase	NA	NA	NA	NA
WP_003631882.1\|615967_616588_+	XTP/dITP diphosphatase	A0A2P1DNP2	Cassava_brown_streak_virus	8.8e-13	34.0
WP_052540750.1\|618315_619173_+\|transposase	IS982-like element ISLh1 family transposase	NA	NA	NA	NA
WP_003627743.1\|619389_620241_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_003627742.1\|620374_620800_+	DUF948 domain-containing protein	NA	NA	NA	NA
WP_003632094.1\|620817_621189_+	hypothetical protein	NA	NA	NA	NA
WP_052540752.1\|621200_622904_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.6e-88	36.9
WP_080890046.1\|623227_624457_+\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	3.0e-65	38.1
WP_003627740.1\|624735_625842_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_052540755.1\|625988_626990_+	substrate-binding domain-containing protein	C6ZCU4	Enterobacteria_phage	2.4e-20	26.3
WP_155382019.1\|627070_628417_-	glycerophosphodiester phosphodiesterase	A0A173GBD0	Staphylococcus_phage	3.6e-11	26.1
WP_003627737.1\|628533_628854_+	hypothetical protein	NA	NA	NA	NA
WP_003627735.1\|628868_630260_+	bifunctional metallophosphatase/5'-nucleotidase	S4VPC4	Pandoravirus	9.5e-07	22.6
WP_003627734.1\|630243_630870_+	YutD family protein	NA	NA	NA	NA
WP_003632178.1\|630866_631646_+	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA
WP_003632181.1\|631642_632251_+	TIGR01906 family membrane protein	NA	NA	NA	NA
WP_012211470.1\|632264_632915_-	VTT domain-containing protein	NA	NA	NA	NA
WP_080669028.1\|632923_633877_-	NAD(P)/FAD-dependent oxidoreductase	A0A2K9L162	Tupanvirus	2.0e-16	28.6
WP_003627915.1\|643426_644590_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
641649:641665	attR	NA	NA	NA	NA
WP_003632302.1\|644603_645647_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_020829374.1\|645646_646690_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_003627918.1\|646765_648823_+	LTA synthase family protein	W6LM83	Streptococcus_phage	7.9e-143	45.7
WP_003632304.1\|648889_649123_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_052540758.1\|649197_651537_+	ribonuclease R	Q0GXV6	Lactococcus_phage	2.1e-83	35.6
WP_003627921.1\|651549_652008_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.1e-43	57.4
WP_020829373.1\|657976_658900_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003629925.1\|659316_660516_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.8e-139	67.0
WP_003627289.1\|660534_661995_+	MFS transporter	S4TR35	Salmonella_phage	4.9e-06	24.2
WP_041806224.1\|662764_664006_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0IJS6	Lactobacillus_phage	1.7e-119	57.5
WP_003627284.1\|664674_665337_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_172644374.1\|665622_668040_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	65.9

DBSCAN-SWA_4

683764 : 738376

Aureococcus_anophage(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052540764.1\|683764_684376_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_003629886.1\|684388_684568_+	hypothetical protein	NA	NA	NA	NA
WP_020829364.1\|684907_686593_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	3.5e-72	31.4
WP_003627244.1\|686703_687615_+	class II fructose-bisphosphate aldolase family protein	NA	NA	NA	NA
WP_052540767.1\|687687_688206_+	NUDIX hydrolase	NA	NA	NA	NA
WP_003629878.1\|688208_688478_+	hypothetical protein	NA	NA	NA	NA
WP_003629876.1\|688625_688898_+	hypothetical protein	NA	NA	NA	NA
WP_052540769.1\|689120_690716_+	ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	9.8e-16	32.4
WP_046814424.1\|690712_692296_+	ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	5.2e-17	24.6
WP_003627230.1\|693060_693234_-	hypothetical protein	NA	NA	NA	NA
WP_003627226.1\|693721_694018_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012212167.1\|694178_694442_+	hypothetical protein	NA	NA	NA	NA
WP_003629850.1\|694506_694821_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_020829357.1\|696856_697342_-	DUF1836 domain-containing protein	NA	NA	NA	NA
WP_003627219.1\|697485_698325_+	DegV family protein	A0A1X9I5J4	Streptococcus_phage	2.1e-49	38.0
WP_023061431.1\|698638_698731_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_003627215.1\|699456_700275_+	triphosphoribosyl-dephospho-CoA synthase	NA	NA	NA	NA
WP_003627214.1\|700313_700655_+	hypothetical protein	NA	NA	NA	NA
WP_080890108.1\|700865_702131_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.1e-51	42.6
WP_025283829.1\|702188_702941_-	aquaporin family protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	6.4e-26	30.7
WP_003627210.1\|703997_704144_+	family 1 glycosylhydrolase	NA	NA	NA	NA
WP_052540772.1\|704183_705041_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_052540775.1\|705129_707187_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_003629781.1\|707207_707558_+	YlbF family regulator	NA	NA	NA	NA
WP_003627202.1\|707566_708787_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
WP_003627201.1\|708767_711269_+	AAA family ATPase	NA	NA	NA	NA
WP_023191986.1\|711261_712239_+	HD domain-containing protein	NA	NA	NA	NA
WP_052540444.1\|712448_713498_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	6.8e-50	35.6
WP_052540781.1\|714041_714944_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_003627197.1\|715061_715397_-	hypothetical protein	NA	NA	NA	NA
WP_003627196.1\|715406_715844_-	HIT family protein	NA	NA	NA	NA
WP_003629777.1\|716339_716675_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_052540784.1\|716689_717433_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.2e-18	29.6
WP_172644358.1\|717419_718613_+	ABC transporter permease	NA	NA	NA	NA
WP_012212149.1\|718624_719278_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_023191989.1\|719347_719668_+	thioredoxin family protein	NA	NA	NA	NA
WP_012212147.1\|719687_720335_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_052540791.1\|720386_721694_-	hypothetical protein	NA	NA	NA	NA
WP_172644359.1\|723010_724240_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	4.7e-127	59.0
WP_155382023.1\|724392_724557_+	hypothetical protein	NA	NA	NA	NA
WP_080890061.1\|724510_724903_+	hypothetical protein	NA	NA	NA	NA
WP_003627177.1\|725046_726360_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_003627174.1\|726414_727392_-	SLAP domain-containing protein	NA	NA	NA	NA
WP_052540801.1\|727480_728995_-	M1 family metallopeptidase	NA	NA	NA	NA
WP_003627170.1\|729132_730110_+	hypothetical protein	NA	NA	NA	NA
WP_052540803.1\|730574_731432_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_012212140.1\|731489_731804_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_003627167.1\|731821_732703_+	SPFH domain-containing protein	NA	NA	NA	NA
WP_052540805.1\|736969_738376_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

752074 : 817945

Bacillus_phage(41.67%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080669025.1\|752074_753031_-\|transposase	transposase	NA	NA	NA	NA
WP_172644360.1\|753077_753383_-	hypothetical protein	NA	NA	NA	NA
WP_052540841.1\|753856_756520_+	DNA polymerase I	F8WQ35	Bacillus_phage	8.9e-62	30.6
WP_003627142.1\|756528_757359_+	DNA-formamidopyrimidine glycosylase	A0A127AWE5	Bacillus_phage	7.1e-18	25.9
WP_023191597.1\|757355_757958_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_003627138.1\|757960_758428_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_052540844.1\|758430_759762_+	DnaD domain protein	NA	NA	NA	NA
WP_012212130.1\|759793_760702_+	primosomal protein DnaI	S5MU12	Brevibacillus_phage	9.2e-27	28.1
WP_003627134.1\|760992_762927_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.6e-97	33.4
WP_003627133.1\|763084_763606_+	hypothetical protein	NA	NA	NA	NA
WP_052540845.1\|763758_764289_+	hypothetical protein	NA	NA	NA	NA
WP_052540848.1\|764483_765533_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	7.1e-47	34.6
WP_080543081.1\|768875_769409_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	5.2e-14	37.8
WP_003627120.1\|769430_769631_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_003627118.1\|769674_770031_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_003627115.1\|770176_770701_+	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA
WP_003627114.1\|770693_771803_+	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA
WP_003627113.1\|771813_772470_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_003627112.1\|772450_773044_+	HD domain-containing protein	NA	NA	NA	NA
WP_052540850.1\|773065_773413_+	ribosome silencing factor	NA	NA	NA	NA
WP_003627109.1\|773418_774570_+	nucleotidyltransferase	NA	NA	NA	NA
WP_003627108.1\|774571_775126_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_003627105.1\|775288_776005_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.8e-25	30.1
WP_172644361.1\|775982_777551_+	HAMP domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_052540853.1\|777587_778076_-	hypothetical protein	NA	NA	NA	NA
WP_052540855.1\|778123_779086_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_023191432.1\|779132_779405_-	acylphosphatase	NA	NA	NA	NA
WP_003627096.1\|779502_780270_+	RNA methyltransferase	NA	NA	NA	NA
WP_003629630.1\|780381_780732_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003627093.1\|781016_782066_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	5.3e-34	37.3
WP_052540857.1\|782069_784484_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003627091.1\|784560_785037_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_003627090.1\|785100_786015_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_003627089.1\|786201_786543_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_080890062.1\|786511_786808_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_080890063.1\|786881_788201_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.7e-45	42.5
WP_080890064.1\|789013_789136_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_052540861.1\|789201_790125_-	N-acetylglucosamine kinase	NA	NA	NA	NA
WP_052540865.1\|790232_792824_-	YfhO family protein	NA	NA	NA	NA
WP_052540867.1\|792914_795023_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_003548272.1\|795099_795249_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_003627079.1\|795311_795872_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_012212104.1\|795892_796573_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_003627075.1\|796573_796801_+	YqgQ family protein	NA	NA	NA	NA
WP_052540870.1\|796859_797261_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_046814389.1\|797339_798260_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_025283780.1\|800021_801359_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_003627065.1\|801613_802333_+	hypothetical protein	NA	NA	NA	NA
WP_052540878.1\|802470_803376_+	hypothetical protein	NA	NA	NA	NA
WP_003627061.1\|803472_804471_+	hypothetical protein	NA	NA	NA	NA
WP_003627059.1\|806036_807029_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	5.3e-52	38.4
WP_003629579.1\|807133_808090_-	beta-galactosidase	NA	NA	NA	NA
WP_003627056.1\|808073_809960_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	4.8e-94	33.6
WP_003627055.1\|810186_811194_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003627050.1\|813559_815476_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_052540881.1\|816709_817945_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.3e-55	46.9

DBSCAN-SWA_6

823393 : 910411

Bacillus_virus(13.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003627031.1\|823393_823882_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.8e-22	45.1
WP_025283763.1\|823874_825011_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_003627029.1\|825207_825924_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SPE1	Cyanophage	7.5e-40	39.1
WP_003627027.1\|825923_826175_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003627026.1\|826174_826846_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_012212086.1\|826842_829074_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	7.8e-144	38.9
WP_003627024.1\|829049_830483_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.3e-61	35.1
WP_003627023.1\|830508_831558_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F0L1	Synechococcus_phage	9.2e-63	43.9
WP_012212085.1\|831554_833690_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.6e-75	46.3
WP_003627020.1\|833702_834959_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_080890046.1\|835378_836608_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	3.0e-65	38.1
WP_052540887.1\|836845_838105_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	6.4e-10	22.6
WP_052540891.1\|838304_839144_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_052540372.1\|839199_840057_-\|transposase	IS982-like element ISLhe7 family transposase	NA	NA	NA	NA
WP_052540892.1\|840126_841104_-	ABC transporter permease	NA	NA	NA	NA
WP_003627725.1\|841109_842258_-	ABC transporter permease	NA	NA	NA	NA
WP_003627724.1\|842238_843783_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.2e-14	26.9
WP_003627723.1\|843851_844937_-	BMP family protein	A0A0A7DN02	Lactobacillus_phage	5.2e-77	49.3
WP_110549469.1\|848446_848533_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_052540894.1\|848963_850361_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_003627719.1\|850515_851745_+	MFS transporter	NA	NA	NA	NA
WP_052540896.1\|851817_853692_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_003627709.1\|857652_857790_-	hypothetical protein	NA	NA	NA	NA
WP_052540898.1\|858193_859360_+	galactokinase	NA	NA	NA	NA
WP_020829322.1\|859381_860845_+	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_052540900.1\|860964_861960_+	galactose mutarotase	NA	NA	NA	NA
WP_172644362.1\|862116_862563_+	SLAP domain-containing protein	NA	NA	NA	NA
WP_052540904.1\|862619_863219_+	SLAP domain-containing protein	NA	NA	NA	NA
WP_052540906.1\|865765_866938_+	MFS transporter	NA	NA	NA	NA
WP_003629414.1\|866956_867364_+	OsmC family protein	NA	NA	NA	NA
WP_020829317.1\|867383_868094_+	oxidoreductase	NA	NA	NA	NA
WP_052540909.1\|869731_870517_+	hypothetical protein	NA	NA	NA	NA
WP_052540917.1\|871410_872793_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.5e-57	46.3
WP_003629407.1\|872957_873464_-	hypothetical protein	NA	NA	NA	NA
WP_052540920.1\|873694_874873_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_052540924.1\|878103_879558_+	N-6 DNA methylase	J7I0U9	Acinetobacter_phage	5.2e-24	26.5
WP_052540931.1\|879544_881038_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_052540934.1\|881052_883950_+	SIR2 family protein	NA	NA	NA	NA
WP_052540937.1\|885294_885714_-	hypothetical protein	NA	NA	NA	NA
WP_052540940.1\|886194_886698_+	hypothetical protein	NA	NA	NA	NA
WP_046814643.1\|887092_887713_-	C39 family peptidase	NA	NA	NA	NA
WP_172644351.1\|888103_888505_-	C40 family peptidase	NA	NA	NA	NA
WP_172644352.1\|888465_888675_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_052540944.1\|891864_894606_+	CRISPR-associated helicase/endonuclease Cas3	A0A2R2ZGW0	Clostridioides_phage	3.4e-08	24.1
WP_052540947.1\|894830_895556_+	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA
WP_172644363.1\|896437_897379_+	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA
WP_025283738.1\|897397_898039_+	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA
WP_052540953.1\|898057_899170_+	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA
WP_003627702.1\|899150_899876_+	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA
WP_052540956.1\|899889_900543_+	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
WP_025283735.1\|900544_901489_+	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_052540959.1\|901488_902370_+	type I-E CRISPR-associated endoribonuclease Cas2	U5PXE0	Bacillus_virus	6.4e-09	29.1
WP_052540965.1\|905340_908166_+	MucBP domain-containing protein	NA	NA	NA	NA
WP_172619750.1\|908308_908485_+	hypothetical protein	NA	NA	NA	NA
WP_143441508.1\|908478_908829_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_052541609.1\|908868_909099_+\|transposase	transposase	NA	NA	NA	NA
WP_003627959.1\|909073_910411_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	7.4e-49	34.4

DBSCAN-SWA_7

915878 : 976994

Streptococcus_phage(17.65%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080890046.1\|915878_917108_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	3.0e-65	38.1
WP_052540970.1\|917345_918605_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	4.0e-12	22.6
WP_052541610.1\|918840_920019_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_052540973.1\|920180_922802_-	cation-translocating P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	1.1e-83	30.0
WP_080890109.1\|923968_924352_-	ABC transporter permease	NA	NA	NA	NA
WP_023191716.1\|924734_925013_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_003627631.1\|925237_925861_-	orotate phosphoribosyltransferase	A0A0B5IW17	Pandoravirus	9.1e-26	32.9
WP_003629217.1\|925862_926567_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_012212412.1\|926821_927745_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_003627628.1\|927911_928454_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_025283719.1\|928598_929555_+	aspartate carbamoyltransferase catalytic subunit	M1HGA5	Paramecium_bursaria_Chlorella_virus	2.8e-26	34.1
WP_003623962.1\|929554_930832_+	dihydroorotase	NA	NA	NA	NA
WP_052540976.1\|930831_931917_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.3e-56	35.8
WP_052540978.1\|931909_935098_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_003627622.1\|936459_937422_+	mucus-binding protein	NA	NA	NA	NA
WP_157952330.1\|937418_937571_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_052540980.1\|937744_938608_+	sugar transporter	NA	NA	NA	NA
WP_003627617.1\|938723_939005_+	hypothetical protein	NA	NA	NA	NA
WP_003627616.1\|938997_939423_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_052540983.1\|939474_941856_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA
WP_025283704.1\|942570_942927_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	5.0e-13	38.6
WP_052540986.1\|942935_943832_-	alpha/beta hydrolase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	2.0e-10	26.1
WP_052540988.1\|944290_945496_+	SLAP domain-containing protein	X2CXX8	Lactobacillus_phage	1.3e-60	50.9
WP_052540372.1\|946032_946890_-\|transposase	IS982-like element ISLhe7 family transposase	NA	NA	NA	NA
WP_003547962.1\|948459_948639_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_003627607.1\|948704_949382_+	hypothetical protein	NA	NA	NA	NA
WP_052540993.1\|951449_952817_+	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_003629152.1\|952983_953295_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_003629151.1\|953313_953604_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_052540995.1\|953713_954823_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_003627601.1\|954906_955476_+	elongation factor P	NA	NA	NA	NA
WP_003627600.1\|955493_955919_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_020829298.1\|955926_956319_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_052540998.1\|956377_957226_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	2.5e-42	43.1
WP_052541001.1\|957363_958422_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	1.6e-46	35.1
WP_052540998.1\|958545_959394_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	2.5e-42	43.1
WP_003627596.1\|959383_960727_+	exodeoxyribonuclease VII large subunit	A0A160DEV2	Gordonia_phage	7.7e-30	32.1
WP_020829297.1\|960729_960972_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_003627594.1\|960974_961844_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_003627593.1\|961844_962657_+	TlyA family RNA methyltransferase	NA	NA	NA	NA
WP_025283695.1\|962667_964350_+	DNA repair protein RecN	NA	NA	NA	NA
WP_003627588.1\|964921_965536_+	guanylate kinase	A0A212Q4J6	Cowpox_virus	6.2e-19	29.8
WP_052541005.1\|965538_965763_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_052541007.1\|965813_968213_+	primosomal protein N'	NA	NA	NA	NA
WP_080543084.1\|968226_969171_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	6.2e-10	30.2
WP_003627583.1\|969121_970486_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_052541611.1\|970490_971246_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA
WP_003627581.1\|971235_973251_+	Stk1 family PASTA domain-containing Ser/Thr kinase	Q8QNG7	Ectocarpus_siliculosus_virus	1.8e-19	29.2
WP_052541010.1\|973251_974142_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_003627579.1\|974154_974805_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003627578.1\|974804_975491_+	thiamine diphosphokinase	NA	NA	NA	NA
WP_080890046.1\|975764_976994_+\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	3.0e-65	38.1

DBSCAN-SWA_8

1070951 : 1141590

Bacillus_phage(18.75%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052541082.1\|1070951_1072649_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.6e-88	36.9
WP_080890046.1\|1072908_1074138_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	3.0e-65	38.1
WP_052541085.1\|1074375_1075635_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	2.4e-09	20.2
WP_012211982.1\|1076629_1077508_-	YitT family protein	NA	NA	NA	NA
WP_020829220.1\|1077720_1078152_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_003628916.1\|1078523_1079360_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_002880182.1\|1079615_1079792_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_003628914.1\|1079902_1080346_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.0e-11	32.9
WP_052541088.1\|1080371_1081331_+	PhoH family protein	W8D063	Erwinia_phage	1.3e-47	46.5
WP_003628912.1\|1081333_1081858_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_003627464.1\|1081857_1082763_+	GTPase Era	NA	NA	NA	NA
WP_003627462.1\|1082763_1083516_+	DNA repair protein RecO	NA	NA	NA	NA
WP_003627460.1\|1083769_1084687_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_003628907.1\|1084679_1086743_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_052541091.1\|1086768_1088604_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.7e-57	34.8
WP_052541094.1\|1088620_1089733_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.4e-37	37.6
WP_003627455.1\|1089782_1090439_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_003628903.1\|1090938_1091625_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_003628901.1\|1091617_1092415_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_003628899.1\|1092434_1093676_+	peptidase T	NA	NA	NA	NA
WP_003627446.1\|1093950_1094316_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003627445.1\|1094317_1095025_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.7e-15	26.9
WP_003628897.1\|1095024_1095870_+	hypothetical protein	NA	NA	NA	NA
WP_020829215.1\|1095880_1096711_+	hypothetical protein	NA	NA	NA	NA
WP_020829214.1\|1096754_1097513_+	hypothetical protein	NA	NA	NA	NA
WP_003627439.1\|1098778_1098970_-	hypothetical protein	NA	NA	NA	NA
WP_020829213.1\|1099032_1099602_-	signal peptidase I	NA	NA	NA	NA
WP_023191573.1\|1099687_1100440_+	hypothetical protein	NA	NA	NA	NA
WP_003628871.1\|1100429_1101413_+	hypothetical protein	NA	NA	NA	NA
WP_003628868.1\|1101387_1102770_+	RsmF rRNA methyltransferase first C-terminal domain-containing protein	NA	NA	NA	NA
WP_003627433.1\|1102821_1103838_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_023060651.1\|1103850_1104933_-	phosphomevalonate kinase	NA	NA	NA	NA
WP_003627429.1\|1104976_1105939_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA
WP_003627427.1\|1105938_1106847_-	mevalonate kinase	NA	NA	NA	NA
WP_052541098.1\|1106927_1110410_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_052541101.1\|1110412_1114027_+	helicase-exonuclease AddAB subunit AddA	S5M596	Bacillus_phage	1.9e-22	23.9
WP_023191571.1\|1114045_1116835_+	DEAD/DEAH box helicase	A0A1X9I5C8	Streptococcus_phage	3.5e-69	26.9
WP_012211951.1\|1116834_1117332_+	hypothetical protein	NA	NA	NA	NA
WP_052541103.1\|1117386_1118685_+\|tRNA	asparagine--tRNA ligase	M1PB22	Moumouvirus	5.1e-47	27.0
WP_003627421.1\|1118770_1119415_+	DnaD domain protein	A0A0N7AE27	Bacillus_phage	4.2e-10	36.0
WP_020829208.1\|1119416_1120037_+	endonuclease III	NA	NA	NA	NA
WP_052541105.1\|1120248_1122528_-	penicillin-binding protein	NA	NA	NA	NA
WP_003628860.1\|1122524_1123157_-	Holliday junction resolvase RecU	A0A1B1P798	Bacillus_phage	1.6e-17	31.2
WP_025283632.1\|1123220_1123790_+	DUF1273 domain-containing protein	NA	NA	NA	NA
WP_014563496.1\|1123880_1124297_+	DivIVA domain-containing protein	NA	NA	NA	NA
WP_020829206.1\|1124758_1125883_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_051355169.1\|1127184_1127469_+	hypothetical protein	NA	NA	NA	NA
WP_003628852.1\|1127465_1129142_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_003627408.1\|1129148_1129613_+	signal peptidase II	NA	NA	NA	NA
WP_025283627.1\|1129605_1130517_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.0e-09	29.1
WP_023191567.1\|1130519_1131575_+	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
WP_052541107.1\|1131578_1134770_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA
WP_003628850.1\|1134837_1136532_-	fibronectin/fibrinogen-binding protein	Q84500	Paramecium_bursaria_Chlorella_virus	3.2e-09	40.0
WP_003627403.1\|1136680_1137097_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_172619750.1\|1137432_1137609_+	hypothetical protein	NA	NA	NA	NA
WP_143441508.1\|1137602_1137953_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_052541609.1\|1137992_1138223_+\|transposase	transposase	NA	NA	NA	NA
WP_003627959.1\|1138197_1139535_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	7.4e-49	34.4
WP_041806223.1\|1140411_1141590_-\|transposase	IS256 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1361574 : 1415346

Lactobacillus_phage(22.22%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052541236.1\|1361574_1363428_-\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	2.2e-11	24.4
WP_003628230.1\|1363433_1364720_-\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	2.1e-21	25.9
WP_003628228.1\|1365010_1365448_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_052541238.1\|1365447_1367688_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	1.3e-10	38.0
WP_052541618.1\|1367702_1368089_-	hypothetical protein	NA	NA	NA	NA
WP_052541240.1\|1368144_1369092_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_012211785.1\|1369152_1369662_+\|tRNA	aminoacyl-tRNA deacylase	NA	NA	NA	NA
WP_052541242.1\|1371419_1373444_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_080890080.1\|1373913_1375143_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	8.8e-65	38.1
WP_052541246.1\|1375380_1376640_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	6.4e-10	22.6
WP_003628193.1\|1376804_1377311_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_003626587.1\|1377413_1378760_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_052541248.1\|1378929_1379883_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_052541250.1\|1379884_1380217_+	hypothetical protein	A0A0P0I7G8	Lactobacillus_phage	3.4e-19	44.4
WP_012211781.1\|1380472_1380853_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_003628186.1\|1380983_1381541_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA
WP_052541252.1\|1381553_1383263_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-19	32.6
WP_003628184.1\|1383255_1384089_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_003626603.1\|1384110_1384269_-	hypothetical protein	NA	NA	NA	NA
WP_003628182.1\|1384299_1384755_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_052541254.1\|1385013_1386192_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_003626611.1\|1386213_1387032_-	hypothetical protein	NA	NA	NA	NA
WP_035509333.1\|1387437_1388997_-	citrate lyase subunit alpha	NA	NA	NA	NA
WP_052541256.1\|1388968_1389883_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
WP_003628158.1\|1389883_1390177_-	citrate lyase acyl carrier protein	NA	NA	NA	NA
WP_052541258.1\|1390166_1391219_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
WP_003626616.1\|1391309_1392101_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_052541260.1\|1392179_1393646_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_052541619.1\|1393792_1394971_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_052541262.1\|1395342_1396656_-	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	1.5e-57	32.3
WP_172644365.1\|1396753_1397773_-	hypothetical protein	NA	NA	NA	NA
WP_012211765.1\|1400350_1401277_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_023061855.1\|1401438_1401585_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_023190708.1\|1401591_1402239_-	hypothetical protein	NA	NA	NA	NA
WP_052541265.1\|1402308_1402623_-	hypothetical protein	NA	NA	NA	NA
WP_155382045.1\|1402691_1403771_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_003626645.1\|1403805_1403973_-	hypothetical protein	NA	NA	NA	NA
WP_003628125.1\|1404020_1404323_-	hypothetical protein	NA	NA	NA	NA
WP_052541268.1\|1404309_1404996_-	mucus-binding protein	NA	NA	NA	NA
WP_052541271.1\|1404992_1405313_-	hypothetical protein	NA	NA	NA	NA
WP_052541273.1\|1405607_1406984_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	5.8e-57	32.3
WP_012211762.1\|1406995_1408399_-	class II fumarate hydratase	NA	NA	NA	NA
WP_052541276.1\|1408609_1409461_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_052541278.1\|1410234_1410519_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_052541280.1\|1410508_1411015_+	hypothetical protein	NA	NA	NA	NA
WP_023193039.1\|1412174_1413317_-	SLAP domain-containing protein	NA	NA	NA	NA
WP_052541282.1\|1413435_1414398_-	hypothetical protein	NA	NA	NA	NA
WP_052541276.1\|1414494_1415346_+\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1429718 : 1496739

Bacillus_virus(30.77%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052541297.1\|1429718_1430576_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_025283496.1\|1430720_1431209_-	nitroreductase family protein	NA	NA	NA	NA
WP_052541299.1\|1432371_1433748_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_052541301.1\|1433797_1434685_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_052541303.1\|1434844_1436086_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0IJS6	Lactobacillus_phage	2.4e-118	56.7
WP_003628093.1\|1436832_1437555_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003626695.1\|1438579_1439284_-	NUDIX hydrolase	G3MA14	Bacillus_virus	1.6e-07	25.5
WP_052541305.1\|1439550_1440729_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_003626697.1\|1441003_1442443_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	1.5e-95	41.8
WP_003626700.1\|1442439_1442994_+	cysteine hydrolase	G3MA16	Bacillus_virus	4.7e-34	41.8
WP_155382049.1\|1445179_1445770_+	UTRA domain-containing protein	NA	NA	NA	NA
WP_052541307.1\|1447342_1449049_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.6e-88	36.9
WP_025283962.1\|1449167_1450550_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.0e-58	46.7
WP_052541308.1\|1450600_1451521_-	aldo/keto reductase	NA	NA	NA	NA
WP_052541311.1\|1451659_1452589_+	nucleoside hydrolase	NA	NA	NA	NA
WP_003626716.1\|1452651_1453167_-	hypothetical protein	NA	NA	NA	NA
WP_003626719.1\|1453773_1455384_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_080669032.1\|1455427_1456003_-	NUDIX hydrolase	NA	NA	NA	NA
WP_003628084.1\|1456059_1457160_-	serine hydrolase	NA	NA	NA	NA
WP_003626722.1\|1457263_1458322_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_052541314.1\|1459520_1460300_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_003626725.1\|1460292_1461228_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_046814027.1\|1461229_1462384_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA
WP_052541316.1\|1462386_1463097_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA
WP_052541317.1\|1463116_1464433_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_012211728.1\|1467129_1468134_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_012211726.1\|1469806_1470397_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_003627951.1\|1470386_1471661_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.3e-132	55.6
WP_003627950.1\|1471790_1473122_-	trigger factor	NA	NA	NA	NA
WP_003627948.1\|1473266_1474457_-	elongation factor Tu	A0A076FFS6	Aureococcus_anophage	5.2e-30	27.3
WP_003627947.1\|1474646_1475480_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003627946.1\|1475482_1477255_-	ribonuclease J	NA	NA	NA	NA
WP_003628079.1\|1477411_1477681_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_003627944.1\|1477879_1478137_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_003627943.1\|1478197_1479184_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_020829125.1\|1479180_1481469_-	DNA internalization-related competence protein ComEC/Rec2	Q332C0	Clostridium_botulinum_C_phage	8.2e-24	31.0
WP_003628076.1\|1481437_1482133_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_052541319.1\|1482210_1483245_-	PDZ domain-containing protein	NA	NA	NA	NA
WP_003628075.1\|1483228_1483723_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.7e-22	35.6
WP_003627938.1\|1483725_1484274_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_003627937.1\|1484270_1484615_-	YlbG family protein	NA	NA	NA	NA
WP_052541321.1\|1484611_1485793_-	cell division protein FtsW	NA	NA	NA	NA
WP_003628073.1\|1485888_1487733_-	translational GTPase TypA	A0A2K5B2A5	Erysipelothrix_phage	3.6e-22	41.5
WP_003628072.1\|1487984_1488539_+	peptide deformylase	E3SLL2	Synechococcus_phage	3.6e-10	39.7
WP_003627933.1\|1488912_1489134_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA
WP_052541323.1\|1489140_1490820_+	ribonuclease J	NA	NA	NA	NA
WP_052541325.1\|1491864_1494216_-	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	1.6e-59	27.1
WP_012211711.1\|1494215_1494860_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003627642.1\|1494859_1495519_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_003627643.1\|1495611_1496739_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_11

1591601 : 1644180

Bacillus_phage(33.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172644367.1\|1591601_1592831_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	8.9e-126	58.7
WP_003626128.1\|1592923_1594381_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.6e-33	33.8
WP_012211656.1\|1594380_1595103_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.6e-37	36.9
WP_052541388.1\|1595105_1595495_-	SdpI family protein	NA	NA	NA	NA
WP_003626124.1\|1595529_1596495_-	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA
WP_052541390.1\|1599137_1600322_-	acetate kinase	NA	NA	NA	NA
WP_003633546.1\|1600368_1601370_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_003626117.1\|1601539_1602040_-	ComGF family competence protein	NA	NA	NA	NA
WP_003626116.1\|1602047_1602317_-	hypothetical protein	NA	NA	NA	NA
WP_003626115.1\|1602313_1602745_-	type II secretion system protein	NA	NA	NA	NA
WP_003626112.1\|1602713_1603064_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_025283433.1\|1603075_1604077_-	type II secretion system F family protein	NA	NA	NA	NA
WP_003626108.1\|1604045_1605020_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_003626106.1\|1605167_1605896_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003626104.1\|1605986_1606502_-	VanZ family protein	NA	NA	NA	NA
WP_003626102.1\|1606596_1606782_-	type Z 30S ribosomal protein S14	NA	NA	NA	NA
WP_025283962.1\|1609853_1611236_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.0e-58	46.7
WP_020829089.1\|1611302_1612259_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_052541392.1\|1613933_1615955_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_052541394.1\|1617133_1618252_+	glycerate kinase	NA	NA	NA	NA
WP_003627959.1\|1618311_1619649_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	7.4e-49	34.4
WP_052541609.1\|1619623_1619854_-\|transposase	transposase	NA	NA	NA	NA
WP_143441508.1\|1619893_1620244_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_172619750.1\|1620237_1620414_-	hypothetical protein	NA	NA	NA	NA
WP_155382059.1\|1620562_1620967_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_052540444.1\|1620993_1622043_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	6.8e-50	35.6
WP_003626076.1\|1622232_1622946_-	hypothetical protein	NA	NA	NA	NA
WP_003626074.1\|1622962_1623778_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003626073.1\|1623787_1624603_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003626072.1\|1624697_1626050_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_052541397.1\|1626080_1627040_-	hypothetical protein	NA	NA	NA	NA
WP_003633493.1\|1627036_1627879_-	TIGR00159 family protein	NA	NA	NA	NA
WP_003626069.1\|1627936_1629010_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003626068.1\|1629006_1629822_-	ABC transporter permease	NA	NA	NA	NA
WP_003633487.1\|1629818_1630631_-	ABC transporter permease	NA	NA	NA	NA
WP_023061657.1\|1630620_1631718_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.6e-33	40.7
WP_012211637.1\|1631783_1632680_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_012211636.1\|1632777_1633311_+	exonuclease	M1PFD8	Streptococcus_phage	6.8e-22	36.6
WP_003626063.1\|1633317_1633818_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_023190579.1\|1633817_1634807_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_052541399.1\|1634818_1635517_-	uracil-DNA glycosylase	A0A0B5IW78	Pandoravirus	3.9e-41	42.2
WP_052541401.1\|1635585_1636467_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003626053.1\|1636473_1636995_+	hypothetical protein	NA	NA	NA	NA
WP_003626051.1\|1637325_1638084_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_003633479.1\|1638109_1639321_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_003626047.1\|1639433_1640450_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_052541403.1\|1640505_1641537_-	hypothetical protein	NA	NA	NA	NA
WP_052541405.1\|1643001_1644180_-\|transposase	IS256 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1796863 : 1861234

Lactobacillus_virus(15.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172644369.1\|1796863_1798093_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	3.0e-121	56.7
WP_052541477.1\|1799507_1800008_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046813927.1\|1801339_1801786_-	hypothetical protein	NA	NA	NA	NA
WP_003626883.1\|1801996_1802200_+	cold-shock protein	Q9AZD3	Lactococcus_phage	1.6e-19	71.9
WP_003626886.1\|1804236_1805028_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA
WP_003633063.1\|1805048_1806227_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_003633061.1\|1806245_1807208_+	ketopantoate reductase family protein	NA	NA	NA	NA
WP_003626890.1\|1808665_1810018_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	F5CA72	Streptococcus_phi-m46.1-like_phage	1.9e-116	48.2
WP_052541479.1\|1810383_1811760_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA
WP_003626893.1\|1811796_1812138_-	hypothetical protein	NA	NA	NA	NA
WP_003633053.1\|1812320_1813025_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_003626897.1\|1813068_1813761_-	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_003633052.1\|1813827_1814748_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.7e-18	25.8
WP_003626901.1\|1814772_1816203_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_003626902.1\|1816207_1817647_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_003633051.1\|1817646_1817955_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_080890093.1\|1817968_1819117_-	CamS family sex pheromone protein	NA	NA	NA	NA
WP_012211516.1\|1819129_1821136_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	7.1e-104	36.1
WP_012211515.1\|1821176_1823423_-	DNA helicase PcrA	A7KV33	Bacillus_phage	6.9e-132	41.3
WP_003633047.1\|1823508_1824156_-	glycoside hydrolase family 73 protein	S5M633	Brevibacillus_phage	1.0e-27	47.7
WP_003626912.1\|1824393_1824864_-	SprT family protein	NA	NA	NA	NA
WP_046813920.1\|1824851_1825550_-	glycosyl transferase	L7RBS6	Acanthamoeba_polyphaga_moumouvirus	2.1e-07	27.6
WP_003633045.1\|1825552_1826983_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_052541480.1\|1826987_1828142_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_052541482.1\|1831135_1832377_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0IJS6	Lactobacillus_phage	5.3e-118	57.4
WP_012211508.1\|1832572_1833403_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	5.7e-68	51.4
WP_003633021.1\|1833399_1834878_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	1.3e-115	47.6
WP_003633019.1\|1834965_1836066_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_020829039.1\|1836073_1836802_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA
WP_052541483.1\|1837057_1838212_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.9e-118	56.8
WP_003633007.1\|1838346_1838733_+	glycerol-3-phosphate cytidylyltransferase	A0A0F7LBI5	uncultured_marine_virus	7.1e-13	47.2
WP_003633005.1\|1838796_1839498_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_052541485.1\|1839586_1840702_-	hypothetical protein	NA	NA	NA	NA
WP_052541487.1\|1841091_1841643_-	hypothetical protein	NA	NA	NA	NA
WP_003626944.1\|1845560_1846256_-	glycerophosphoryl diester phosphodiesterase	M1ICP4	Paramecium_bursaria_Chlorella_virus	1.4e-14	25.8
WP_003626945.1\|1846306_1847524_-	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	1.8e-14	37.3
WP_003626946.1\|1847524_1848103_-	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	1.1e-22	37.1
WP_003626948.1\|1848172_1849231_-	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
WP_052541489.1\|1849368_1850070_-	SLAP domain-containing protein	A0A249XZV3	Enterococcus_phage	8.4e-12	51.4
WP_003626959.1\|1851754_1852147_-	hypothetical protein	NA	NA	NA	NA
WP_003626960.1\|1852257_1852458_+	hypothetical protein	NA	NA	NA	NA
WP_003632976.1\|1852556_1852955_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA
WP_052541491.1\|1852901_1854656_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.7e-88	36.9
WP_080890046.1\|1854979_1856209_+\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	3.0e-65	38.1
WP_052541492.1\|1858238_1859393_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_080890095.1\|1860004_1861234_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	1.3e-124	57.9

DBSCAN-SWA_13

1866245 : 1941105

Lactobacillus_virus(18.18%)

holin,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052541499.1\|1866245_1867424_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	9.8e-122	57.5
WP_046814585.1\|1869174_1869594_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003632732.1\|1869739_1869967_-	hypothetical protein	NA	NA	NA	NA
WP_155382080.1\|1870053_1870620_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_003632604.1\|1870771_1871956_-	acetate kinase	NA	NA	NA	NA
WP_172644370.1\|1872287_1873418_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_052541628.1\|1873371_1873839_-	hypothetical protein	NA	NA	NA	NA
WP_023061029.1\|1874636_1874750_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_003626988.1\|1874933_1875227_-	hypothetical protein	NA	NA	NA	NA
WP_003626989.1\|1875300_1877112_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	Q76DQ7	Chlorella_virus	1.6e-91	37.4
WP_052541501.1\|1877308_1879933_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_052541502.1\|1880246_1881620_+	amino acid permease	NA	NA	NA	NA
WP_012211482.1\|1881657_1882173_-	acetyltransferase	NA	NA	NA	NA
WP_052541504.1\|1883201_1883570_-	DUF956 family protein	NA	NA	NA	NA
WP_003627003.1\|1883573_1884494_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_052541506.1\|1884522_1885335_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
WP_003627006.1\|1885353_1886373_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_080668462.1\|1886435_1886729_-	GH36 C-terminal domain-containing protein	NA	NA	NA	NA
WP_052541508.1\|1886855_1887713_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_052541514.1\|1894428_1895736_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.1e-93	44.1
WP_003627857.1\|1895959_1896511_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_020829027.1\|1896510_1897119_-	TVP38/TMEM64 family protein	M1Q152	Streptococcus_phage	3.6e-35	39.1
WP_020829026.1\|1897248_1898046_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003627854.1\|1898201_1898903_+	hypothetical protein	NA	NA	NA	NA
WP_052541516.1\|1898986_1900369_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012212197.1\|1900414_1901449_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_052541518.1\|1901607_1905312_-	MMPL family transporter	NA	NA	NA	NA
WP_052541520.1\|1905316_1905889_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_052541521.1\|1906024_1906975_-	serine hydrolase	NA	NA	NA	NA
WP_012212201.1\|1906987_1907905_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_052541524.1\|1908043_1909345_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_052541525.1\|1910256_1911552_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003629944.1\|1911535_1912360_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_003627844.1\|1912363_1913230_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_003629946.1\|1913229_1914315_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.2e-26	33.2
WP_003629948.1\|1914568_1915996_-	C69 family dipeptidase	NA	NA	NA	NA
WP_003627841.1\|1916037_1916892_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_052541527.1\|1916982_1917936_-	ribonuclease H-like domain-containing protein	A0A0K2SUJ2	Clostridium_phage	1.5e-11	33.1
WP_052541529.1\|1917944_1918766_-	hypothetical protein	NA	NA	NA	NA
WP_155244194.1\|1918780_1918939_-	hypothetical protein	NA	NA	NA	NA
WP_052541531.1\|1920864_1921605_-	nicotinamide mononucleotide transporter	A0A0A7NTY4	Lactobacillus_phage	6.8e-121	82.7
WP_052540682.1\|1922065_1922923_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_014919325.1\|1922979_1924584_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-15	23.3
WP_003627833.1\|1924704_1925619_+	prolyl aminopeptidase	NA	NA	NA	NA
WP_052541533.1\|1925708_1926710_+	adenosine deaminase	NA	NA	NA	NA
WP_052541536.1\|1926757_1927261_+	nucleoside 2-deoxyribosyltransferase	C1KFI2	Lactobacillus_virus	4.2e-13	31.2
WP_080890097.1\|1927753_1928956_+\|transposase	transposase	NA	NA	NA	NA
WP_080890111.1\|1929012_1929198_+	hypothetical protein	NA	NA	NA	NA
WP_052541541.1\|1929294_1929699_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_052541543.1\|1931491_1932793_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003629975.1\|1932845_1933418_-	elongation factor P	NA	NA	NA	NA
WP_003629976.1\|1933452_1934367_-	type I pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	4.7e-31	33.2
WP_052541545.1\|1934425_1934986_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_003627823.1\|1934982_1935429_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003627822.1\|1935432_1936236_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003627821.1\|1936239_1936860_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-28	38.7
WP_003627820.1\|1936875_1937523_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_052541548.1\|1937962_1940269_-	AAA family ATPase	NA	NA	NA	NA
WP_020829017.1\|1940418_1941105_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_14

1949670 : 2015980

Bacillus_phage(21.43%)

transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052541557.1\|1949670_1950216_-\|transposase	transposase	NA	NA	NA	NA
WP_041806223.1\|1950908_1952087_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_052541560.1\|1952386_1953838_-	APC family permease	NA	NA	NA	NA
WP_052541562.1\|1954062_1956168_+	putative ornithine decarboxylase	NA	NA	NA	NA
WP_020829010.1\|1956341_1957223_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	6.7e-75	49.8
WP_012212228.1\|1957445_1957952_-	hypothetical protein	NA	NA	NA	NA
WP_052541563.1\|1959216_1960680_-	flippase	NA	NA	NA	NA
WP_052541564.1\|1962088_1963075_-	glycosyltransferase	NA	NA	NA	NA
WP_080890099.1\|1965488_1966157_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_052541567.1\|1966254_1967397_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.2e-23	27.9
WP_052541568.1\|1967461_1968373_-	glycosyltransferase family 2 protein	A0A0N7G7L1	Chrysochromulina_ericina_virus	3.9e-09	35.0
WP_155382067.1\|1968437_1969466_-	hypothetical protein	NA	NA	NA	NA
WP_052541570.1\|1969455_1970703_-	O-antigen ligase family protein	NA	NA	NA	NA
WP_172644372.1\|1970695_1970839_-	hypothetical protein	NA	NA	NA	NA
WP_052541571.1\|1970835_1971939_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_052541629.1\|1971931_1973041_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_052541572.1\|1973199_1973850_-	sugar transferase	NA	NA	NA	NA
WP_052541573.1\|1973969_1974740_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_014564198.1\|1974739_1975528_-	CpsD/CapB family tyrosine-protein kinase	NA	NA	NA	NA
WP_052541574.1\|1975538_1976405_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_052541575.1\|1976416_1977469_-	LCP family protein	A0A1X9I5X1	Streptococcus_phage	1.1e-15	31.7
WP_052541576.1\|1977952_1979218_+	GTPase HflX	NA	NA	NA	NA
WP_080890046.1\|1980239_1981469_+\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	3.0e-65	38.1
WP_052541577.1\|1981849_1982653_-	hypothetical protein	NA	NA	NA	NA
WP_052541578.1\|1982790_1983723_-	C40 family peptidase	M9MUG9	Rhodococcus_phage	1.6e-13	37.6
WP_155382071.1\|1984027_1985275_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.6e-58	46.7
WP_052541579.1\|1985327_1986071_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	3.4e-19	47.2
WP_023192037.1\|1986669_1986942_-	ATPase	NA	NA	NA	NA
WP_003630132.1\|1987034_1987586_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	8.6e-20	45.2
WP_023190299.1\|1987775_1988321_-	AAA family ATPase	A0A218KC48	Bacillus_phage	2.5e-11	32.2
WP_052541581.1\|1988415_1988715_+	DUF2187 family protein	NA	NA	NA	NA
WP_023192036.1\|1988807_1990313_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_003630140.1\|1990327_1990969_-	hypothetical protein	NA	NA	NA	NA
WP_020828973.1\|1992729_1993074_-	hypothetical protein	NA	NA	NA	NA
WP_025283926.1\|1993186_1993723_-	hypothetical protein	NA	NA	NA	NA
WP_155382073.1\|1993898_1995128_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	1.7e-124	57.9
WP_052541583.1\|1995437_1995923_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_012212261.1\|1995925_1996696_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_003630152.1\|1996706_1998248_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2H4UUX5	Bodo_saltans_virus	3.7e-44	28.0
WP_003630153.1\|1998256_1998634_-	hypothetical protein	NA	NA	NA	NA
WP_052541584.1\|1998767_1999322_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_052541585.1\|2000075_2001317_-	LCP family protein	NA	NA	NA	NA
WP_003630171.1\|2001478_2003275_+	oligoendopeptidase F	NA	NA	NA	NA
WP_023190802.1\|2004809_2006186_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_003627328.1\|2006620_2007415_-	metal ABC transporter permease	NA	NA	NA	NA
WP_003630181.1\|2007414_2008062_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.5e-15	29.3
WP_023190801.1\|2008093_2009056_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003630183.1\|2009333_2009606_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_052541586.1\|2009809_2011807_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_052541587.1\|2011827_2012742_-	1-phosphofructokinase	NA	NA	NA	NA
WP_003630188.1\|2012741_2013497_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.0e-18	27.8
WP_003630190.1\|2013850_2014018_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_014919460.1\|2014580_2014772_-	hypothetical protein	NA	NA	NA	NA
WP_003630196.1\|2015070_2015292_-	hypothetical protein	NA	NA	NA	NA
WP_003630198.1\|2015281_2015509_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_052541588.1\|2015656_2015980_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_15

2036840 : 2092538

Bacillus_phage(26.67%)

transposase,integrase

attL 2037541:2037552|attR 2092819:2092830

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052540337.1\|2036840_2038235_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
2037541:2037552	attL	NA	NA	NA	NA
WP_003630227.1\|2038443_2039067_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003630233.1\|2039193_2039436_-	hypothetical protein	NA	NA	NA	NA
WP_012212290.1\|2039537_2040950_+	C69 family dipeptidase	NA	NA	NA	NA
WP_003630234.1\|2040994_2041669_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-33	39.4
WP_046814510.1\|2041670_2042732_-	ABC transporter permease	NA	NA	NA	NA
WP_003630236.1\|2042732_2043260_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_020828959.1\|2043370_2043970_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_025283955.1\|2044113_2044869_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_003627385.1\|2044865_2045627_-	peroxide stress protein YaaA	NA	NA	NA	NA
WP_052541593.1\|2045685_2046330_+	hypothetical protein	NA	NA	NA	NA
WP_052541594.1\|2048093_2050628_-	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	1.3e-70	26.2
WP_003627391.1\|2050849_2051209_+	hypothetical protein	A0A0E3XCL7	Enterococcus_phage	1.5e-20	67.1
WP_025283962.1\|2051286_2052669_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.0e-58	46.7
WP_052541595.1\|2052785_2053148_+	hypothetical protein	NA	NA	NA	NA
WP_052541596.1\|2056609_2058187_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	5.1e-25	33.7
WP_080890103.1\|2058202_2060491_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_052541597.1\|2064060_2064270_+	enterocin	NA	NA	NA	NA
WP_052541598.1\|2067526_2069695_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A0D3MSW9	Lactococcus_phage	1.1e-171	47.5
WP_003627927.1\|2069687_2070113_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	J9PTY0	Bacillus_phage	1.1e-11	38.3
WP_023190550.1\|2070093_2071101_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A160DHK0	Gordonia_phage	2.7e-96	53.7
WP_003630326.1\|2072060_2072618_-	serine acetyltransferase	NA	NA	NA	NA
WP_003627923.1\|2072583_2073768_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_003627922.1\|2073789_2074701_-	cysteine synthase family protein	A0A1W6JIM2	Lactococcus_phage	4.4e-61	42.0
WP_052541599.1\|2075090_2076497_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_003627982.1\|2077602_2077821_-	hypothetical protein	NA	NA	NA	NA
WP_023061709.1\|2077831_2078389_-	hypothetical protein	NA	NA	NA	NA
WP_041806223.1\|2078866_2080045_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_020828949.1\|2080751_2082323_-	ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	4.5e-13	23.6
WP_052541600.1\|2082329_2083916_-	ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	1.7e-12	21.8
WP_052541601.1\|2083926_2084769_-	hypothetical protein	NA	NA	NA	NA
WP_003625300.1\|2084801_2085818_-	ThiF family adenylyltransferase	A0A1V0SCZ9	Indivirus	2.0e-06	37.8
WP_003625298.1\|2085832_2086849_-	hypothetical protein	NA	NA	NA	NA
WP_003625296.1\|2086850_2087483_-	hypothetical protein	NA	NA	NA	NA
WP_003625293.1\|2087560_2087704_-	hypothetical protein	NA	NA	NA	NA
WP_052541602.1\|2087919_2089617_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.6e-88	36.9
WP_025283962.1\|2089751_2091134_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.0e-58	46.7
WP_003572735.1\|2091255_2091558_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_003625288.1\|2091547_2091826_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_003625277.1\|2091929_2092538_+\|integrase	site-specific integrase	D2XR58	Bacillus_phage	1.2e-17	31.2
2092819:2092830	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009907

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection