CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011077	Klebsiella michiganensis strain RC10 chromosome, complete genome	4 crisprs	DEDDh,RT,WYL,cas3,csa3,DinG	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011077_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011077_1

881603-881690

Orphan

Consensus_repeat	Method
GAAAGTAAGGCAGACAAAGAAGATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011077_1

>merge|NZ_CP011077|1|881603-881690|CRISPRCasFinder
GAAAGTAAGGCAGACAAAGAAGATCCTCTCGCCATGTGAGAGAAAGCGTCAGGGAGAAAGAAGAAAGTAAGGCAGACAAAGAAGATCC

>NZ_CP011077|1|1|881603-881690|CRISPRCasFinder
GAAAGTAAGGCAGACAAAGAAGATCC	TCTCGCCATGTGAGAGAAAGCGTCAGGGAGAAAGAA
GAAAGTAAGGCAGACAAAGAAGATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011077.1\|WP_148674283.1\|890458_890983_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011077.1\|WP_045781439.1\|869147_870731_-\|gamma-glutamyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223482
NZ_CP011077.1\|WP_045781440.1\|871879_873121_+\|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223153
NZ_CP011077.1\|WP_045784511.1\|870853_871693_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP011077.1\|WP_045781443.1\|878714_879482_+\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP011077.1\|WP_045781450.1\|887345_888449_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP011077.1\|WP_045781446.1\|881730_883188_-\|beta-Ala-His-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP011077.1\|WP_045781449.1\|885937_887047_-\|porin	unknown	unknown	gnl\|CDD\|182275
NZ_CP011077.1\|WP_045781448.1\|885480_885882_+\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP011077.1\|WP_045781447.1\|884175_885423_+\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP011077.1\|WP_045784514.1\|892258_893251_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379157
NZ_CP011077.1\|WP_045784512.1\|874538_875306_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|182461
NZ_CP011077.1\|WP_045781441.1\|873120_874377_+\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|236456
NZ_CP011077.1\|WP_045781451.1\|888460_889714_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP011077.1\|WP_008457349.1\|883443_883902_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP011077.1\|WP_008457307.1\|878076_878658_+\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP011077.1\|WP_045781453.1\|894594_895071_+\|WbuC-family-cupin-fold-metalloprotein	unknown	unknown	gnl\|CDD\|275159
NZ_CP011077.1\|WP_045781445.1\|880486_881542_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP011077.1\|WP_045781444.1\|879452_880193_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP011077.1\|WP_045781442.1\|875402_877847_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528

Protein	Function_ID	Function_description	E-value
NZ_CP011077.1\|WP_045781439.1\|869147_870731_-\|gamma-glutamyltransferase-family-protein	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	2.22825e-150
NZ_CP011077.1\|WP_045781440.1\|871879_873121_+\|alanine--glyoxylate-aminotransferase-family-protein	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	2.2634e-136
NZ_CP011077.1\|WP_045784511.1\|870853_871693_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.68655e-46
NZ_CP011077.1\|WP_045781443.1\|878714_879482_+\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	6.10444e-144
NZ_CP011077.1\|WP_045781450.1\|887345_888449_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP011077.1\|WP_045781446.1\|881730_883188_-\|beta-Ala-His-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP011077.1\|WP_045781449.1\|885937_887047_-\|porin	gnl\|CDD\|182275	PRK10159, PRK10159, phosphoporin PhoE.	1.25758e-180
NZ_CP011077.1\|WP_045781448.1\|885480_885882_+\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	4.6057e-82
NZ_CP011077.1\|WP_045781447.1\|884175_885423_+\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP011077.1\|WP_045784514.1\|892258_893251_+\|HNH-endonuclease	gnl\|CDD\|379157	pfam13391, HNH_2, HNH endonuclease.	1.22295e-14
NZ_CP011077.1\|WP_045784512.1\|874538_875306_-\|amidohydrolase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
NZ_CP011077.1\|WP_045781441.1\|873120_874377_+\|allantoate-amidohydrolase	gnl\|CDD\|236456	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed.	0
NZ_CP011077.1\|WP_045781451.1\|888460_889714_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP011077.1\|WP_008457349.1\|883443_883902_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.72496e-113
NZ_CP011077.1\|WP_008457307.1\|878076_878658_+\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	3.52209e-148
NZ_CP011077.1\|WP_045781453.1\|894594_895071_+\|WbuC-family-cupin-fold-metalloprotein	gnl\|CDD\|275159	TIGR04366, hypothetical_protein, cupin fold metalloprotein, WbuC family. Members of this family show sequence similarity to cupin fold proteins (see pfam07883), including conserved His residues likely to serve as metal-binding ligands. Many members occur in bacterial O-antigen biosynthesis regions. Some members have acquired the gene symbol wbuC (e.g. Jarvis, et al, 2011), but publications using this term do not ascribe a function.	7.245e-63
NZ_CP011077.1\|WP_045781445.1\|880486_881542_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP011077.1\|WP_045781444.1\|879452_880193_-\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.49155e-99
NZ_CP011077.1\|WP_045781442.1\|875402_877847_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0

>NZ_CP011077.1|WP_045781445.1|880486_881542_+|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSAQRRGVISTANYPARKYGVRSAMSTAMALKLCPHLTLLPGRFEAYKEASSHIREIFARYTPLIEPLSLDEAYLDVTHSEHCQGSATLMAREIRQAIADELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPEQVPDFLATLPLGKIPGVGKVTAAKLETLGLRTCADVQNADLAMLLKRFGKFGRVLWERSQGIDEREISNDRQRKSVGVERTLAEDIHEWHECEEIIERLYPELERRLAKERADLRIARQGIKLKFNDFQLTTQEHVWPKLNKEDLIATARKTWLERRGGRGVRLVGLHVTLLDPQLERQLLLGL
>NZ_CP011077.1|WP_045781444.1|879452_880193_-|murein-L,D-transpeptidase
MRKIALIIAMLSMPFFSFASLLNSGGVAAPVGKDSRQQLMGSPVYIQIFKEERTLELWVKMGEQYQLLNSYRICNYSGGLGPKQRQGDFKSPEGFYSVDRSQLKPDSRFYKAINIGFPNEFDRAHGYEGKYLMIHGACVSIGCYAMTDSGIDEIFQFVTGALVFGQPRVQVSIFPFRMTDANMERHKYSTYINFWKELKPGYDYFAANHQPPGVAVVSGNYVISKPAVMTPVQPQLASNYKLTEAK
>NZ_CP011077.1|WP_045781443.1|878714_879482_+|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIARLVQDYPIKSCSVVAHIRQANRGKVALENTHPFTRELWGRNWTYAHNGQLKGYRTLETGTFRPIGETDSEQAFCWLLHKLTQRYPRTPGNMEAVFRYITELGAELREKGVFNMLLSDGSYVMAFCSTNLFWITRRAPFGVAKLLDQDVEIDFQEETTPNDVVTVIATQPLTANETWHKIEPGKSALFCLGELIV
>NZ_CP011077.1|WP_008457307.1|878076_878658_+|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRSELNEAAETLTNFLKDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVSNDFGYDYVFSRYVEAVGREGDVLLGISTSGNSGNVIKAIEAARAKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVKA
>NZ_CP011077.1|WP_045781442.1|875402_877847_-|acyl-CoA-dehydrogenase
MLILSIVLTVVLLGVLFYHQANLLLSSVILLAWTAALGFAGIWSFWVLVPLAVILVPLLVTPLRKSLISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFRGKPDWQKLHNYPQPKLTEEEQAFLDGPVEEACRMANDFQITHELADLPPELWAFLKEHRFFAMIIKKEYGGLEFSAYAQARVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTEEQKDHYLPRLARGLEIPCFALTSPEAGSDAGAIPDSGVVCMGEWQGEQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPNRLLGGEEDLGITCALIPTHTPGVEIGKRHFPLNVPFQNGPTRGKDIFVPIDFIIGGPKMAGQGWRMLVECLSVGRGITLPSNATGGLKTVAMATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIVLGEKPAVLSAIVKYHCTHRGQRAILDAMDIVGGKGIMLGDGNFVARAYQGAPIAITVEGANILTRSMIIFGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNKMRSLWLGLTNGLGSSTPTRDATKRYYQYINRLSANLALLSDVSMAVLGGSLKRRERISARLGDVLSQLYLATAVLKRYEDEGRNEADLPLVHWGVQDALYQAEQAIDDLLRNFPNRFVAGTLRLVIFPLGRRYDAPSDALDHKLAKILQVPSATRTRIGRGQYLTPSEHNPAGLLEAALLDIMAAEPIHQRVCKELKRNLPFTRLDELAKQLLGEGKITADEAAILTKAEASRLRSINVDEFDPEALATQPVKVPEKHRKVEAA
>NZ_CP011077.1|WP_045784512.1|874538_875306_-|amidohydrolase
MSGLKVSVLQQPLVWMDGAANLRHFDVLLEGVRGRDLIILPEMFTTGFAMEAAVQSMPEQEVIDWMQFKAQQTQAMIAGSAALQTERGPVNRFLLVQPDGKVHFYDKRHLFRMADEHHHYQAGEERVIIEWRGWRILPLVCYDLRFPVWSRNRNDYDLALYVANWPAPRSLHWQSLLQARAIENQAYVAGCNRVGTDGNGHHYRGDSRIISPQGEILANCEPHQAARLDADLSLIALREYREKFPAWQDADPFSL
>NZ_CP011077.1|WP_045781441.1|873120_874377_+|allantoate-amidohydrolase
MAAPRMDVNYAEVAAQRVMDRADQLAAISESAGQLTRVYLSVQHLRANQLVAGWMEQLGMTTWQDAVGNICGRYEGRQEGAKAILLGSHLDTVRNAGRYDGMLGVLCALEVVAYLSQHNIQLEQAIEIVGFGDEEGTRFGVTLLGSRGITGSWPEHWLGCEDAGGVSVAQAMTIAGLDPTRIASAERPKSDFSAYLELHIEQGPVLEEQGLALGVVTAINGARRLNCSFTGHAGHAGTVPMALRKDALAAAAEWMTFIESATRHRGPDEVATVGTLSCAPGAVNVIPGDVQLTLDIRSPRDESLGSLLGQLLAEGEAIAARRGMQFSAEAYYAIPATPCDAGLQATLTQAVNEVQGRSLSLPSGAGHDAIAIAERWPSAMLFVRCEKGVSHHPAESVTESDVALAVQAFTRAVTLLAE
>NZ_CP011077.1|WP_045781440.1|871879_873121_+|alanine--glyoxylate-aminotransferase-family-protein
MFDIQQFSQINPPHRLLMGPGPINADPRVLRAMASQLIGQYDPVMTGYMNEVMVLYRELFRTENKWTMLVDGTSRAGIEAILLSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTLEVPWGEVFSPQQIEDAIKSVKPRLLLTVQGDTSTTMLQPLAELGEICRRHGVLFYTDATASFGGNELLTDAWGLDAVSAGLQKCLGGPSGSSPVTLSPQMEEAIRRRKCVEEGIRTAAHQDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATSMLFAARECARVILEEGLDAGIARHELHGRAMVAGIQGMGLETFGDLENKMNNVLGVTIPAQVHGEEVRKLLLEDFHIEIGTSFGPLQGKIWRIGTMGYNARKDCVLQTLTALEAVLNRLGFKTVQGEAMQAAWNVYAQGTR
>NZ_CP011077.1|WP_045784511.1|870853_871693_+|MurR/RpiR-family-transcriptional-regulator
MKQLDERLRASWALFSPQEQRVASFIVDHFDDLISYNSAELARLSGVSKATVSRLFKRLGYERYKDMREELRTLRQSGMPLTENRDAVQGNTLLARHYKQEMANLTQLVNHLEAGPFAEVVNALVNGKRLFIIGMRNSWPVAMHLRQQLLQVRSGVHLLPQPGQTLAEELVDISPEDCVVTVAFRRRPRIIKPLLASLQQRGIPLVLLSEPASAGLAAWSGWHLSAPLDSVSAFDSYSSAMSLVNLLANAVLHESLTSGRQRIHNIAELYTELDELEQR
>NZ_CP011077.1|WP_045781439.1|869147_870731_-|gamma-glutamyltransferase-family-protein
MQSNMAPGGMAVTPHHLASESALSVLRHGGDAIEAMVAAAATIAVVYPHMNGIGGDGFWLVVPPQGEPVAIDASGAAGSLASLDFYRGEGAIPHRGTRAALTVPGTLSGWAEALKVSSELGGGQMPLSRLMADAIRYAADGIPVTASQANATQSKYAELVDIPGFADTFLQRGEVPVTGSRFTQPRLAATLTRMTVEGLDSFYRGPLASVIADELAELGLPVTAADLAAHRATRTTPLRLEHQAGEIFNLAPPTQGLVSLAILGITDRLSMANASEVQTVHRIVEATKKAFALRDTHITDPRLIATSTQNLLDPEALDLLAAKIDDQSAAPWGKGKGPGDTVWMGIIDGNGLAVSFIQSIYHEFGSGVVLPKSGVLWQNRGASFSLDPEHLLALVPGKKPFHTLNPAAARLADGRTLVYGSMGGDGQPQTQATIFTRYVLQGVDLQEAICAPRWLLGRTWGQVSDSLKLESRFSPDTVTALEALGHEVETVSAFSEIVGHAGAIVRHTNGMLEGAWDPRSNGSAAGF
>NZ_CP011077.1|WP_045781446.1|881730_883188_-|beta-Ala-His-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEALAEHILSWAKEKGLHVERDQVGNILIRKPATPGMENRKPVALQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQAGWMQADILINTDSETEGEIYMGCAGGIDFITTLPLQREAVPAGFDTFKLTIKGLKGGHSGADIHLGLGNANKLLARFLLAHAAELDARLLDLNGGTLRNAIPREAFATLAVPAAKAAELKSAANDYLAVLKNELSAVEKNLTVLVEATASDKQALTAKTRDTFLHLLNATPNGVIRNSDAVKGVVETSLNAGVVTMGDDSAEIICLIRSLIDSGKDYVVSVLESLGELAGAKTVAKGSYPGWQPDANSPVMGLVRETYQKLFNQTPNIMVIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP011077.1|WP_008457349.1|883443_883902_+|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLAQRLLPAEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELTVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGQPLVDDYVIDIPQDTWIEQPWDMGVVFVPPLAGR
>NZ_CP011077.1|WP_045781447.1|884175_885423_+|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRARHTATPAIQSALDGKNVPHWYRMINRLMWIWRGVDPREILEVQARIACTEAERTNDDLFDTVMGYRGGNWIYEWSKQAMLWQQRAGQETDEEKIGKCWLQAANLYSIAAYPHLKGDALAEQAQVLANRAYEEAAPRLSGGLRELEFPMTGGGTISGFLHMPKGAEGPFPTVLMCGGLDALQSDYYSLFEKYFAPQGIAMLTIDMPSVGFSSKWKLTQDSSVLHQHVLKALPNIPWVDHTRVAAFGFRFGANVAVRLAYLEAPRLKAVACLGPVVHALLSDPQRQANVPEMYIDVLASRLGMTSISDSALSVELNRYSLKTQGLLGRRCPTPMLSGFWENDPFSPEEESRLITSSSADGKLLQIPFKPVYQNFDKALQEITGWVKQRLR
>NZ_CP011077.1|WP_045781448.1|885480_885882_+|sigma-factor-binding-protein-Crl
MTLPSGHPKSRLIRKFASLGPYIREEQCEDNRFFFDCLAVCVNVKPAPEKREFWGWWMVLEAQEKQFTYTWQFGLFDKDGKWTATPAKDKEVDEKLEQTLRGFHGRLKDLLASLELGLVPAENFAEKPLKLSA
>NZ_CP011077.1|WP_045781449.1|885937_887047_-|porin
MKKSTLALVVMGIVAASASQAAEVYNKNGNKVDIYGRVKAEHYFSDNTGSDGDQTYARLGFKGETQINSQLTGYGQWEYQIAGNKAENDSTGTKTRLAFAGLKAGDYGSFDYGRNYGVLYNIASYTNMMPEFGDDSFVRTDTFMTGRATGVATYRNNNFFGLVDGLKLALQYQGKNGADSANTRTDTSRQNGDGFGTSLSYDIADTGLSVGAAYANSNRTNAQKASAYGKGDKAEAWTTGIKYDKNNVYLATIYAETRNMNPISVPGSLAGTSSSVSGFANKNQAFEAIAQYQFDFGLRPSLGYVQSKAKDIEGIGDADLVKYIDVAATYYFNKNMSAFVDYKINQLSDNNKLKLNNDDVVAVGMVYQF
>NZ_CP011077.1|WP_045781450.1|887345_888449_+|glutamate-5-kinase
MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQQGLYTADPRNNPAAELIKEVHGIDDALRAIAGDSVSGLGTGGMGTKLQAADVACRAGIDVIIAAGSKPGVIGDVMAGNPVGTRFHAQQSPLENRKRWIFGAPPAGEITVDDGALSAILERGSSLLPKGIKSVSGNFSRGEVIRIRSLEGRDIAHGVCRYNSDALRRIAGHHSQQIDEILGYEYGPVAVHRDDMIVN
>NZ_CP011077.1|WP_045781451.1|888460_889714_+|glutamate-5-semialdehyde-dehydrogenase
MLEQMGKAAKEASYQLALLSGREKNRVLEKIADYLEARSEQILTANQQDVDEARKNGLSDAMLDRLQLTPARLKGIADDVRQVCSLADPVGQVIDGGLLDSGLRIERRRVPLGVVGVIYEARPNVTVDVASLCLKTGNAAILRGGKETWRTNNATVGVIQQALEDCGLPKAAVQAIENPDRALVTEMLRLDRYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIVVDDTAEIEPALKIIVNAKTQRPSTCNTVETLLVHQAIADRFLPALSKQMAESGVTLHADEKSLPGLQAGPAVVEAVKEADYNDEWLSLHLNVKVVADLDAAIAHIREHGTQHSDAILTRTLRNANRFINEVDSSAVYVNASTRFTDGAQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGFGDDTIRA
>NZ_CP011077.1|WP_148674283.1|890458_890983_+|hypothetical-protein
MFRTLTLTLLFLSPTICFAASHEEVLRLNAEQKAGSEVVCHAPLNIIVDQKPVTLDFKNNMTVISNKGNNRSFQVTTTFIPSGTSTPLITQRYHLDVITDETGQTHKIDPNSVSVTSPYSSELAQKNESQLRSAPESYQSDSMVTVTDFPNFIIQGYENGPVTRCSISTLNGNG
>NZ_CP011077.1|WP_045784514.1|892258_893251_+|HNH-endonuclease
MPIRISNHREYLLEKRTGKYSPITYLGTAHQGYCSVISKVIAWYLLSRAGVYYKNNSIVELEKSIGYRDTKSVSYRVSNLNALMSSLSRENVLEALGNFDGLIYSDFKYQKSTTYDLEYHGVRYPPKVIFGISAIALINRPLFADEFSGGVNSPCFDILDKLGFNIVKKNKANDDYEFEHIDFLINDIEMIENDDSISVTEREQLIAARKGQGKYRKELVKLYGKCIVTGIPYEFMLRASHIKPWRSSNNKERLDPFNGLLLSSNIDILFDKGLLSFKNSGELILCNELNNEHTLHLLGIDLHKKVKISSNTFQYLDWHRKNVFGRYKGK
>NZ_CP011077.1|WP_045781453.1|894594_895071_+|WbuC-family-cupin-fold-metalloprotein
MKQITFSDLEKQSEQAANSPRLRANRNLHPELSDPVQRLAIAMEPGTYVRPHRHPHTFELLTSLSGRFLVLNFDDNGNVTHRVVLGEDCKVLETDAGTWHAVLSLDKGGVIFEVKHGAYQPVAEQDMAPWAPAENEPGAAELMRWYAVAQVGDGGFSL

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Crispr_ID: NZ_CP011077_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011077_2

1940709-1940845

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011077_2

>merge|NZ_CP011077|2|1940709-1940845|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCACTGATATATTTGAGAATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP011077|2|2|1940709-1940845|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCACTGATATATTTGAGAATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011077.1\|WP_045782258.1\|1948789_1949815_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP011077.1\|WP_045782251.1\|1939905_1940304_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100005
NZ_CP011077.1\|WP_045782259.1\|1950287_1950869_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP011077.1\|WP_045782248.1\|1934705_1936118_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP011077.1\|WP_045782250.1\|1938915_1939848_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_CP011077.1\|WP_045782255.1\|1945091_1946240_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP011077.1\|WP_008456504.1\|1934159_1934396_-\|major-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|185294
NZ_CP011077.1\|WP_096754119.1\|1940339_1940480_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011077.1\|WP_045782246.1\|1932568_1932985_+\|cysteine-desulfuration-protein-SufE	unknown	unknown	gnl\|CDD\|181767
NZ_CP011077.1\|WP_008456477.1\|1950107_1950197_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP011077.1\|WP_045782257.1\|1947854_1948793_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP011077.1\|WP_045782247.1\|1933094_1934093_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|182294
NZ_CP011077.1\|WP_045782249.1\|1937919_1938843_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP011077.1\|WP_045782245.1\|1931336_1932557_+\|cysteine-desulfurase-SufS	unknown	unknown	gnl\|CDD\|181766
NZ_CP011077.1\|WP_045782256.1\|1946537_1947740_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP011077.1\|WP_045782252.1\|1941006_1942380_-\|MdtK-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP011077.1\|WP_045782260.1\|1951202_1952048_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP011077.1\|WP_045784584.1\|1936782_1937892_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|223727
NZ_CP011077.1\|WP_045782254.1\|1943472_1944864_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP011077.1\|WP_045782253.1\|1942616_1943261_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846

Protein	Function_ID	Function_description	E-value
NZ_CP011077.1\|WP_045782258.1\|1948789_1949815_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP011077.1\|WP_045782251.1\|1939905_1940304_+\|RidA-family-protein	gnl\|CDD\|100005	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	3.0853e-55
NZ_CP011077.1\|WP_045782259.1\|1950287_1950869_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.63701e-128
NZ_CP011077.1\|WP_045782248.1\|1934705_1936118_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP011077.1\|WP_045782250.1\|1938915_1939848_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.33715e-54
NZ_CP011077.1\|WP_045782255.1\|1945091_1946240_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP011077.1\|WP_008456504.1\|1934159_1934396_-\|major-outer-membrane-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	6.55333e-38
NZ_CP011077.1\|WP_045782246.1\|1932568_1932985_+\|cysteine-desulfuration-protein-SufE	gnl\|CDD\|181767	PRK09296, PRK09296, cysteine desulfuration protein SufE.	3.88538e-102
NZ_CP011077.1\|WP_045782260.1\|1951202_1952048_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	4.92985e-44
NZ_CP011077.1\|WP_045782257.1\|1947854_1948793_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP011077.1\|WP_045782247.1\|1933094_1934093_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	5.73646e-84
NZ_CP011077.1\|WP_045782249.1\|1937919_1938843_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.4293e-74
NZ_CP011077.1\|WP_045782245.1\|1931336_1932557_+\|cysteine-desulfurase-SufS	gnl\|CDD\|181766	PRK09295, PRK09295, cysteine desulfurase SufS.	0
NZ_CP011077.1\|WP_045782256.1\|1946537_1947740_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP011077.1\|WP_045782252.1\|1941006_1942380_-\|MdtK-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP011077.1\|WP_045784584.1\|1936782_1937892_+\|FAD-dependent-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	7.66853e-32
NZ_CP011077.1\|WP_045782254.1\|1943472_1944864_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP011077.1\|WP_045782253.1\|1942616_1943261_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	6.36422e-125

>NZ_CP011077.1|WP_096754119.1|1940339_1940480_-|hypothetical-protein
MEIDLDNLVFSGLDEAEARNAERQEDADKKAQAVVADDDCGDACKI
>NZ_CP011077.1|WP_045782251.1|1939905_1940304_+|RidA-family-protein
MSDREIIVPSAMQALAERAGYAPAVVAGNTVYCAGQVGRTPDLQAIADPKAQFMACWENLRLVLQAAGCRFEDVVEMTTYHVNMKEHMDVFREVKDAVFPRGHCAWTCIGVSELAHPGLLVEVKCIAVRRTA
>NZ_CP011077.1|WP_045782250.1|1938915_1939848_+|alpha/beta-hydrolase
MLPDNAQAALAGWIKAAEPVVQKVYGQSDTDWKDVRADYVQQLDKLFPAGEGIAFADVGLGGVRAMSVTPEDVIDGRIMLYIHGGGYVHGGVEAYRGLTGRYARALKAKVYVVDYRQAPEFPFPTPIDDVFQAYRTLLEQGANPRSLMISGDSAGGAMVVTLMRKARNAGLALPAAAVAISPWANLTHSGASASVRDGLDPLCSVAFLNQLARSFLAGELPTHPDVSPVFADVHGLSPTLIQIGENEVMLSDAIRLASHMSESRVRTTLEVWPEMFHVWHLFAGILPEADQALRNAIRFLEDALNPIDIG
>NZ_CP011077.1|WP_045782249.1|1937919_1938843_-|LysR-family-transcriptional-regulator
MPIRSGAKNHSELDLGGLRIFVAIAEGGSFVAGGKALGLTRSAAGKAIARLEAQLETRLFNRTTRRVALTRDGYGFYERCVQILQDIEDAEASVRQNFSSPSGVLRLSVPETWGKVVLLPFLKHIMAAWPGLNIEVSFTDRVVDLVTEGFDLSIRLGDLPKDSQLVARPVQRIRPHLFASPAYLAETGTPAVPADLPLHQRLVYGLSPQTADWTLFTISNESVVIEGHSRIRFDSGEAICAAAVEGLGIAFLPAFLVAQYVAEGKLVPVLPELCGTPLSVNVVYPNRKHLAAKVRLFIDRLVEYLDY
>NZ_CP011077.1|WP_045784584.1|1936782_1937892_+|FAD-dependent-monooxygenase
MITIIGAGVAGPLLAYMLHRAGIAVCVLEADASLDSRHQGGMLNLNEGTGKPALRAAGLFEAAMALVLPGADATLMRDEKGHVLYQDEGDGSRPEIDRGALRRLVVEALPAGIIRWNSRVTSIEPQGTGFHLTLGDGSTHVGEALVGADGAWSKVRPLLTAQKPLYSGITFVELRYRNVSQQYPAVKALVGNGSLFALSKGRGIMAHCEPGDKISAYAAIPVPEAQSRGAFTRDELVECFRGWGECYREMLAKSEGPLIARPVGVLPTGEFWSAEGNVTLIGDAAHVMSPFAGEGVNLAMADAVDLAQAIIAQPASLAVAFRQYQEAMAARTVHFQQESAANFAMGFAADAPRELLALFTGLASQAPGR
>NZ_CP011077.1|WP_045782248.1|1934705_1936118_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLTKMLDAGMNVMRLNFSHGDYEEHGQRIKNLRNVVAKTGKKAAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKSVVGNSEIVAVTYEGFTNDLTVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVVEIREHLKAHGGEKIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCVRARKVVITATQMLDSMIKNPRPTRAEAGDVANAIIDGTDAVMLSGESAKGKYPLEAVTIMATICERTDRVMTSRLDNNNDSRKLRITEAVCRGAVETAEKLEAPLIVVATQGGKSAKAVRKYFPNATILALTTNEVTARQLVLSKGVVPQMVKEIASTDDFYRLGKEVALESGLARKGDIVVMVSGALVPSGTTNTASVHVL
>NZ_CP011077.1|WP_008456504.1|1934159_1934396_-|major-outer-membrane-lipoprotein
MNRTKLVLGAVILASTMLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQAHSYRK
>NZ_CP011077.1|WP_045782247.1|1933094_1934093_+|L,D-transpeptidase-family-protein
MKYASLLTLAIIGALSAIRPALALDYPLPPEGSRLIGQNQTYTVQEGDRNLQAIARRFDTGAMLLLEANNTIAPVPKPGTVLTIPSQLLLPDVPREGIVVNLAELRLYYFPPGQNIVQVYPIGIGLQGLETPLMTTRIGQKIPNPTWTPTAGIRQRSLEKGIKLPPVVPAGPNNPLGRFAMRLAYGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFEQARTGTPVRVINDPVKFSVEPNGVRYVEVHRPLSQDEQQNTQTMPYVLPAGFSEFRAANGVEKGLVEKALYRRAGYPVVVSAGQTPAATAAVQSASNGMVNAEEATSATQ
>NZ_CP011077.1|WP_045782246.1|1932568_1932985_+|cysteine-desulfuration-protein-SufE
MATLPDKDKLLKNFSRCANWEEKYLYIIELGGRLPELAAEKHQPEHIIQGCQSQVWIVMHQQPDGVITLEGDSDAAIVKGLIAIVFILYQQMTPQDIVAFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRNQASNLI
>NZ_CP011077.1|WP_045782245.1|1931336_1932557_+|cysteine-desulfurase-SufS
MSFSIEQVRADFPILSREVNGQPLAYLDSAASAQKPQVVIDAELEFYRHGYAAVHRGIHTLSAEATTLMENVRSQAARFINAAKPEEIVFVRGTTEGINLVANSWGNANVQAGDNIIISAMEHHANIVPWQMLCERTGAELRVIPLNQDGTLQLDVFPTLIDDRTKLLAIAHVSNVLGTENPVKEMIATAHKSGVKVLVDGAQAVMHHVTDVTALDCDFYLFSGHKIYGPTGIGVLYARESILQDMPPWEGGGSMIATVSLNAGTTYAAAPWRFEAGTPNTAGIIGLGAALSYVEGLGMEAIGEYERSLMHYAQNALQAVPDLTVYGPAERRGVLAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAFYSVPAMCRASFAMYNTEQEVDRLVAGLQRIHSLLG
>NZ_CP011077.1|WP_045782252.1|1941006_1942380_-|MdtK-family-multidrug-efflux-MATE-transporter
MQKYLTEARQLLALAIPVIVAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPTVAQLNGSARRDRIAHQVRQGFWLAGMVSVLVMVVLWNAGHIIHAMHNIDPELADKAVRYLRALLWGAPGYLFFQVGRNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFFSMLSYIRRARSMRDIKNQDSFSKPDWAVVKRLSQLGLPIALALFFEVTLFAVVALLVSPLGITDVAGHQIALNFSSLMFVLPLSLGAAVTIRVGFRLGQGSTLDAQIAARTGVGVAICLAMCTALFTVIFREHIALLYNDNPAVVALAAHLMLLAAIYQISDSIQVIGSGVLRGYKDTRSIFFITFIAYWVLGLPSGYILGLTDWVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRWLQRQPSATILQRAAR
>NZ_CP011077.1|WP_045782253.1|1942616_1943261_+|riboflavin-synthase
MFTGIVQGTATLVSIDEKPNFRTHVIDMPTEMLPDLETGASVAHNGCCLTVTAIDGNRVSFDLMKETLRITNLGELNVGDSVNVERAAKFNDEIGGHLMSGHIMTTAEISKILTSENNRQIWFKIQDKTLMKYILYKGYVGIDGISLTVGEVTATRFCVHLIPETLERTTLGAKKLGQRVNIEIDPQTQAIVDTVERVLASREAAMAAAIPDGE
>NZ_CP011077.1|WP_045782254.1|1943472_1944864_-|glycoside-hydrolase-family-1-protein
MKYAFPEHFWWGSAASGPQTEGEALNFGKSETIWDRWFAEQPNRFHHGVGPQNTSTFYQRWKQDIALLKKLNHNTFRTSISWARLIPDGTGEVNPLAVEFYNRVIDELLAQGIKPFINLYHFDMPMVMQEKGGWESREVVDAYAAYARTCFELFGDRVKHWFTFNEPVVPVECGYLYDYHYPNVVDFNRAVTVAYHTMLAHAKAVKAYHARNDDGQIGIILNLTPSYPRSQNPADVKAANLADLMFNRSFLDPALRGEYPAELVAFLKEHGKLPACQPEDKALLAAGVVDLLGINYYQPRRIKCRDTLVNPESPFMPEWFFESYEMPGRKMNPYRGWEIYERGIYDILTNLRENYGNPACYISENGMGVENEQRFIDHGQINDDYRIDFVRDHLKWLHKGISEGSNCLGYHMWTFIDNWSWCNAYKNRYGFVSLDLNTQQRTIKKSGEWFMKTAAENGFNEEN
>NZ_CP011077.1|WP_045782255.1|1945091_1946240_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVRDNEWYRIANEMLSRAGITLNGPNPFDIQVKNPDFFKRVLQEGSLGLGESYMDGWWECERLDIFFTKVLRAGLENQLPHHFKDTLRIAAARLVNLQSKKRAWIVGKEHYDLGNDLFSRMLDKHMQYSCGYWKEATNLSDAQDAKLKMICEKLQLKPGMKLLDIGCGWGGLAEFAARNYGVSVFGVTISAEQQKMAQERCKGLDVTILLQDYRDLNEQFDRIVSVGMFEHVGPKNYATYFDVADRNLKPDGIFLLHTIGSKKTDNNVDPWINKYIFPNGCLPSVRQIADASEPHFVMEDWHNFGADYDKTLMAWYERFLAAWSEIEDNYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGIEHGLRVPR
>NZ_CP011077.1|WP_045782256.1|1946537_1947740_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPSKGFLIWLAGLSVLGFLATDMYLPAFAAIQQDLGTTASAVSASLSLFLAGFAFAQLMWGPLSDRFGRKPVLLIGLAMFAVGCIGMLWVQDATTLLVLRFIQAVGVCSAAVSWQALVTDYYPANRAGRIFATIMPLVGLSPALAPLLGSWLLNHFEWQAIFAVLFAVALLLMIPTLRLKPRTQHHEQTEDNKVSFFSLLRSRVYGGNVLIYAACSASFFAWLTGSPFILNDMGYSPAAIGLSYMPQTVAFLVGGYGCRSALQKWSGKQLLPWLLALYALSVVATWGVAVSGHANLTLLLIPFCVMAAANGAIYPIVVASALLPFPQATGKAAALQNTLQLGLCFLASLMVSWLVTTPLLTTTSVMLATILLAGLGYALQHTVRREAQNKSHSELSRAQ
>NZ_CP011077.1|WP_045782257.1|1947854_1948793_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSGAAQELHRVPSAISYTVRQLEEWLAVPLFERRHRDVELTAAGAFFLKEGRSVIKKMMTTRQQCQQIANGWRGHLSIAVDNIVKPERTRQLVLDFYRHFPDIELRVSQEVFNGVWDALADGRVEAAIGATQAIPVGGRYAFRDMGTLSWCCVVSASHPLAQQAGIILDDDIRPWPSLVLEDTSRSLPKRITWLLDNQRRVVVPDWASGADCLTAGLCIGMVPTHIARPWLVKGDWKALRLENPFPDAACCLTWRQDDASPALSWLLDYLGDSETMNQEWLQEPGNAFPAPEEV
>NZ_CP011077.1|WP_045782258.1|1948789_1949815_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIESVENSCFAKGYTLILGNAHNNYEKQRAYLSMMAQKRVDGLLVMCSEYPDTLLSTLEEYRHIPMVVMDWGEARADFTDSVVDNAFHGGYLAGRYLIERGHRDIGAIPGQLERNTGGGRHAGFLKALEEANIKVPDNWVVQGDFEPESGYRAMQQLLNQPHRPTAVFCGGDIMAMGAICAADEMGLRVPQDISIIGYDNVRNARYFSPALTTIHQPKERLGETAFNMLLDRIINKREESQTIEVHPRLIERRSVADGPFRDYRR
>NZ_CP011077.1|WP_008456477.1|1950107_1950197_+|YnhF-family-membrane-protein
MSTDLKFSVVTTVIVLSLIVAGALTAVLH
>NZ_CP011077.1|WP_045782259.1|1950287_1950869_-|superoxide-dismutase-[Fe]
MSFELPTLPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKSSPFEGKTLEEIVRTSDGAIFNNAAQVWNHTFYWHCLAPNAGGEPTGEVLAAINHAFGSVEAFKKQFTEAAIKNFGSGWTWLVKNSDGSLAIVSTSNAGTPLTTGAKPLLTVDVWEHAYYIDYRNARPVYLDHFWALVNWNFVAQNLVG
>NZ_CP011077.1|WP_045782260.1|1951202_1952048_-|C40-family-peptidase
MARITKISITLCALLFALPYTPLAQASEHVRHPVAQRGQTAKTTTGKSNKGKEKAKPKVSTASTKKSGKKNASSAKAKVAKHTTSGKSSTLAKTSSKKTSQKLAIQPTVSSLAYTEKCTHRKGHKKQCVKVKSEKNLTIAQAHKVRVQKAQKTAMNKLMGQIGKPYRWGGTSPRTGFDCSGLIYYAYKDLVNIRIPRTANEMYHLRDASSVDRSELESGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGRDIQITSLSEDYWQRHYVGARRVMTPKTIR

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Crispr_ID: NZ_CP011077_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011077_3

2036074-2036156

Orphan

Consensus_repeat	Method
AATTCCATCTCCCCTCAGGGGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011077_3

>merge|NZ_CP011077|3|2036074-2036156|CRISPRCasFinder
AATTCCATCTCCCCTCAGGGGAGGGTTAAGGTGAGGGGGAGTTGAAGCGTTCTCTGTATGAATTCCCTCTCCCCTCAGGGGAG

>NZ_CP011077|3|3|2036074-2036156|CRISPRCasFinder
AATTCCATCTCCCCTCAGGGGAG	GGTTAAGGTGAGGGGGAGTTGAAGCGTTCTCTGTATG
AATTCCCTCTCCCCTCAGGGGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011077.1\|WP_045782318.1\|2026307_2027810_+\|carboxylesterase/lipase-family-protein	unknown	unknown	gnl\|CDD\|225181
NZ_CP011077.1\|WP_045782326.1\|2035413_2036007_+\|tellurite-resistance-methyltransferase-TehB	unknown	unknown	gnl\|CDD\|183040
NZ_CP011077.1\|WP_045782330.1\|2040699_2042001_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_CP011077.1\|WP_045782328.1\|2037526_2039122_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP011077.1\|WP_045782334.1\|2045567_2046440_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP011077.1\|WP_045782325.1\|2034424_2035417_+\|dicarboxylate-transporter/tellurite-resistance-protein-TehA	unknown	unknown	gnl\|CDD\|236756
NZ_CP011077.1\|WP_045782320.1\|2028769_2029939_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|183514
NZ_CP011077.1\|WP_045782324.1\|2033384_2034311_-\|LbetaH-domain-containing-protein	unknown	unknown	gnl\|CDD\|100038
NZ_CP011077.1\|WP_045782327.1\|2036177_2037407_-\|peptidase-T	unknown	unknown	gnl\|CDD\|237371
NZ_CP011077.1\|WP_052698914.1\|2042572_2043688_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP011077.1\|WP_045782319.1\|2027796_2028651_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP011077.1\|WP_045782331.1\|2042017_2042323_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP011077.1\|WP_045782329.1\|2039239_2040607_-\|PTS-cellobiose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|273034
NZ_CP011077.1\|WP_045782322.1\|2030982_2032638_+\|glucan-biosynthesis-protein	unknown	unknown	gnl\|CDD\|225673
NZ_CP011077.1\|WP_045782321.1\|2029951_2030728_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270421
NZ_CP011077.1\|WP_071844374.1\|2046419_2047628_-\|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl\|CDD\|129923
NZ_CP011077.1\|WP_045782332.1\|2043776_2044445_+\|DUF3313-domain-containing-protein	unknown	unknown	gnl\|CDD\|378712
NZ_CP011077.1\|WP_045782333.1\|2044495_2045395_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP011077.1\|WP_045782317.1\|2024922_2026266_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319958
NZ_CP011077.1\|WP_045782323.1\|2032833_2033388_+\|50S-ribosomal-protein-L7/L12-serine-acetyltransferase	unknown	unknown	gnl\|CDD\|182270

Protein	Function_ID	Function_description	E-value
NZ_CP011077.1\|WP_045782318.1\|2026307_2027810_+\|carboxylesterase/lipase-family-protein	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	7.16012e-161
NZ_CP011077.1\|WP_045782326.1\|2035413_2036007_+\|tellurite-resistance-methyltransferase-TehB	gnl\|CDD\|183040	PRK11207, PRK11207, tellurite resistance methyltransferase TehB.	6.40293e-140
NZ_CP011077.1\|WP_045782330.1\|2040699_2042001_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP011077.1\|WP_045782328.1\|2037526_2039122_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP011077.1\|WP_045782334.1\|2045567_2046440_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.14346e-33
NZ_CP011077.1\|WP_045782325.1\|2034424_2035417_+\|dicarboxylate-transporter/tellurite-resistance-protein-TehA	gnl\|CDD\|236756	PRK10764, PRK10764, potassium-tellurite ethidium and proflavin transporter; Provisional.	5.60857e-169
NZ_CP011077.1\|WP_045782320.1\|2028769_2029939_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|183514	PRK12414, PRK12414, putative aminotransferase; Provisional.	0
NZ_CP011077.1\|WP_045782324.1\|2033384_2034311_-\|LbetaH-domain-containing-protein	gnl\|CDD\|100038	cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.	1.76713e-08
NZ_CP011077.1\|WP_045782327.1\|2036177_2037407_-\|peptidase-T	gnl\|CDD\|237371	PRK13381, PRK13381, peptidase T; Provisional.	0
NZ_CP011077.1\|WP_052698914.1\|2042572_2043688_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.36125e-36
NZ_CP011077.1\|WP_045782319.1\|2027796_2028651_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.52536e-60
NZ_CP011077.1\|WP_045782331.1\|2042017_2042323_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.76053e-46
NZ_CP011077.1\|WP_045782329.1\|2039239_2040607_-\|PTS-cellobiose-transporter-subunit-IIC	gnl\|CDD\|273034	TIGR00359, NN'-diacetylchitobiose_permease_IIC_component, phosphotransferase system, cellobiose specific, IIC component. The family consists of the cellobiose specific form of the phosphotransferase system (PTS), IIC component. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	4.32303e-149
NZ_CP011077.1\|WP_045782322.1\|2030982_2032638_+\|glucan-biosynthesis-protein	gnl\|CDD\|225673	COG3131, MdoG, Periplasmic glucans biosynthesis protein [Inorganic ion transport and metabolism].	0
NZ_CP011077.1\|WP_045782321.1\|2029951_2030728_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.62206e-110
NZ_CP011077.1\|WP_071844374.1\|2046419_2047628_-\|benzoate/H(+)-symporter-BenE-family-transporter	gnl\|CDD\|129923	TIGR00843, Benzoate_membrane_transport_protein, benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.74501e-138
NZ_CP011077.1\|WP_045782332.1\|2043776_2044445_+\|DUF3313-domain-containing-protein	gnl\|CDD\|378712	pfam11769, DUF3313, Protein of unknown function (DUF3313). This a bacterial family of proteins which are annotated as putative lipoproteins.	3.7696e-68
NZ_CP011077.1\|WP_045782333.1\|2044495_2045395_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.29624e-12
NZ_CP011077.1\|WP_045782317.1\|2024922_2026266_+\|VOC-family-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
NZ_CP011077.1\|WP_045782323.1\|2032833_2033388_+\|50S-ribosomal-protein-L7/L12-serine-acetyltransferase	gnl\|CDD\|182270	PRK10151, PRK10151, 50S ribosomal protein L7/L12-serine acetyltransferase.	1.1412e-103

>NZ_CP011077.1|WP_045782326.1|2035413_2036007_+|tellurite-resistance-methyltransferase-TehB
MTEKSESYYSEKYGLTATHSDVLNAVKYVAPGKTLDLGCGGGRNSLYLNQKGFDVTAWDKNPMSIARLNQIIDAEGLKNIVTAEVDLNQLSFDGEYDFILSTVVMMFLERGTIPGLIANMQRCTKPGGYNLIVAAMDTEDFPCTVGFPFAFKEGELRNYFEGWELIKYNEDVGQLHKTDENGNRIKLRFATMLARKK
>NZ_CP011077.1|WP_045782325.1|2034424_2035417_+|dicarboxylate-transporter/tellurite-resistance-protein-TehA
MNKPNAGSFINLPAGYFGMVLGIIGMGFAWRYAATLWPVPSFIGEALVALAGGIWLLLALAFLTRLLRYPHSVFAEIHHPLMSSFVSLFPATTMLVAIGVVPYLRSLAAVMFGFGAAVQLCYAAWQSAGLWRGTHPQDATTPGLYLPTVANNFISAMACGALGYHDLGILFLGAGVFSWLSLEPAILHRMRSAGELPTPVRTSLGIQLAPALVACSAYLAVNGGTTDFFAKMLFGYGLLQLLFMLRLMPWYLAQPFNASFWSFSFGISALATTALHLSAGSGDGLFQAIAIPLFIFTNVIIGLLLGRTFILLMQGKLILRTARPEKKDPS
>NZ_CP011077.1|WP_045782324.1|2033384_2034311_-|LbetaH-domain-containing-protein
MKKYRLTDISRLHDYQHDGEQRQVRLWQTEALYAFGDVEAGQYGGWIEEEANLSHSGTCWLEPGALVWNKAQIEDNATVRGESEICHRAKVGGHAQVEDSRISGECSIHGSARVLQQSQVIAVLGLTEDSEMRLQIYGSATVRASRIVHQAQIYGHARVNNAFVEHRSAIFDNAIIEGNAENNVWVCDCAQISGNARIIAGSGDSQIPTIRYSSRVYGNAIIEGDCVLKHRVQVYGNAALIGGPVLLDNNVRVYGQAKVMGNVLIENNVQIYDEATVEGFDGELIHLRGMKDINGAQRITRTPFYGIF
>NZ_CP011077.1|WP_045782323.1|2032833_2033388_+|50S-ribosomal-protein-L7/L12-serine-acetyltransferase
MEQQQKWQDEVIAVNDDIELHSVNERFVGDVFALVQRNKSWLQKAMNWPQYVVSEDDTRKTLQGNYVLHHKGYAKMFMILYRGELAGVFSFNQIVPTDKTAYIGYWLSEDRQGKGIVSAVIEAAIGKYAGEGTVRRFVIKCIVTNRASNRVAQRNGFTLEGCLKQAEFLNDEFHDQNIYGRIAD
>NZ_CP011077.1|WP_045782322.1|2030982_2032638_+|glucan-biosynthesis-protein
MNRRRFIQASMALAAACGTPTLATLFSRSAFAAESGIADGHSTAFDFAVLQGMAHDLSKKPWGGAPRALPNTLANLTPQAYNAIQYDAEHSLWNNIDNRQLDVQFFHVGMGFRRRVRMFSLDSATHQAREIHFRPELFNYNNAGVDTKQLEGQTDLGFAGLKVFKAPELARRDVVSFLGASYFRAVDSTYQYGLSARGLAVDTFTDTPEEFPDFTSFWFETPKASDTTFVVYALLDSPSVTGAYKFIISCEAERVVMEVDNHLYARKDVKQLGIAPMTSMFACGTNERRTCDTIHPQIHDSDRLAMWRGNGEWICRPLNNPQKLQFNAFMDENPKGFGLLQLDHDFASYQDIMGWYNKRPSLWVEPRNKWGKGTVGLMEIPTTGETLDNIVCFWQPAKPVKAGDEFEFKYRLYWSGLPPVTTDLARVYATRTGMGSFPEGWAPGEHFPEKWSRRFAIDFIGGDLKAAAPKGIEPVITLSNGEAKQIEILYVEPFDGYRILFDWYPTNDSTDPVEMRMFLRCQGKAISETWLYQYFPPPPDKRKYVDDREMR
>NZ_CP011077.1|WP_045782321.1|2029951_2030728_+|transporter-substrate-binding-domain-containing-protein
MKKVYALSLLLGLCSSFSALAAGELRYGLEAEYPPFESRNSAGELEGFDVELGKAICQAASLKCSWVETSFDALIPGLVAKKFDAINSAMNITEQRRKSIDFTQPIYRIPSQLVGKEGSGLEATAEGLKGKTIGVLQGSIQETYAKEHWEKQGVNVVSYKDQNMAWADLLNGRIDASLVMSAAGQAGFLSTPQGKGFGFIGKPVSDDTILGSGIGFGLRKGDAVTKKELDAAIDKVKADGTVTKLAQKFFPGIDVSVK
>NZ_CP011077.1|WP_045782320.1|2028769_2029939_+|pyridoxal-phosphate-dependent-aminotransferase
MAIQTPVQQRSKLPDVGTTIFTVIGQLSAQHKAINLSQGAPNFPSDPKLVAGVTKAMQEGHNQYAPMTGLASLKQLIADKVANLYGAVYDPADEVLITASASEGLYSAISGLVHPGDEVIYFEPSFDSYAPIVRLQGARPVALKLSLPDFTVNWDEVRAAITPRTRMIIVNTPHNPSGQVFSAHDLEMLAALTRHTDIVILSDEVYEHIVFDGKKHHGMATHPQLAERSVIVSSFGKTFHVTGWRVGYCLAPAALMDEICKVHQFLMFSADTPMQYAFADYMSDPQTYLSLAAFYQRKRDLMQSLLAESPFELLPGGGSFFLLARFGHFSDESDSEMVKRLITDYGVATIPLSAFYTDGTDNKIIRLSFAKDEATLRAGAQALCRVKPR
>NZ_CP011077.1|WP_045782319.1|2027796_2028651_-|LysR-family-transcriptional-regulator
MTRRNFPLNTLDAFLVTARHLNLTKAAKELCLTQGAVSRKIAALEQWLGFALFERHARGLRLTPQGSALLPDLQSAFNTLLDVAGRACHKPEIIRLKAPTCAMRWLVPKLIQLEQRMPEIQVALTTTVEHGVNFKNEPFDAAIVFGQQARSGTLLFEERLTPVISQALLPPEPGNWERLTFLHPTRDRTDWSLWLSDNPSPPWQTMLKNQHFDTMDLAISAAIQGFGIAIADETLVAEDLRTGRLVRPFAGSVKTGAAYRLAVKPGSEGAAGLEAFCNALFSPD
>NZ_CP011077.1|WP_045782318.1|2026307_2027810_+|carboxylesterase/lipase-family-protein
MEHVVNVAQGQLSGVLQGDIAVYRGIPFAMPPIGNLRWRAPQPPENWQDIRVADTFAPACWQSLEYCKAVGGGDPGQFSEDCLYLNIWTPARRADKPLPVMVWLHGGGYTIGAGSLPPYDGTALASRGVVLVTVNYRLGHLGFFAHPALDEENPDGPIHNFGLLDQIAALRWVKENIAAFGGDAGNVTLFGESAGARSVLSLLASPLASGLFHKGIIQSAYTLPDVDRRQALKRGVAVAEHFGLKNANAESLRSLPASELWALETPLNIGPTPVSGDIVLPDPMLDTFFAGRQHRMPLMVGSNSDEASVLSYFGIDPAGQVELLRREKRLGLGLIKLLYPGVKGDAELGRQVCRDMAFTTLGFVVMQAQQRVGQPCWRYYFDYVAEAERETYAHGTWHGNEVAYVFNTLQLSPSASEYVTERDLQFAAHIGDYWVSFARSAGAHSKALPGPLSWPASTKGRDRTLRLGVHLRAQFKVENRFMRLRMQLFKRVMKHHVSLD
>NZ_CP011077.1|WP_045782317.1|2024922_2026266_+|VOC-family-protein
MANTLTADEIRDKFSQAMSAMYQQEVPQYGTLLELVADVNLAVLEHDPELYQQLENADELARLNVERHGAIRVGKAEELAVLKRIFAVMGMYPVGYYDLSQAGVPVHSTAFRPIDDQALARNPFRVFTSLLRLELIDNPALRARAAAILEKRDIFTPGCRKMLDLHDRQGGFSEAEANTFVAEALETFRWHQHATVDAETYRALHDEHRLIADVVCFRGCHINHLTPRTLDIDRVQALMPERGISPKAIIEGPPRRERPILLRQTSFKALEEPILFAGEHHGTHTARFGEIEQRGVALTPKGRALYDELLLEAGNGTDNLSHQHHLQEVFSRFPDSDALLRRQGLAYFRYRLTPVGDMHRQSIKPGDDPQLLIERGWLIAQPIIYEDFLPVSAAGIFQSNLGSDGGHRQHGHSSRSEFETALGAAVADEFSLYQQAEDRSKRRCGLL
>NZ_CP011077.1|WP_045782327.1|2036177_2037407_-|peptidase-T
MPSSLSEQLTQRLFRYLAVTSQSDPRVSSLPSTPGQHEMASLLAEELRALGLENIVIDEHATVTAVKKGNVAGAPRVGFITHIDTVDVGLSPDIHPQILRFTGEDLCLNAKENIWLRTAEHPEINAYPGEEIIFSDGTSVLGADNKAAVTVVMTLLENLTPEHRHGDIVVAFVPDEEIGLCGAKALDLARFDVDFAWTIDCCELGEVVYENFNAAHAELKFTGVTSHPMSSKGVLVNPLLMAMDYISHFDRQQTPEHTEGREGYVWFNGIQASQSEALLKANIRDFDLANFERRKLQISEVAQKIATQYPTARVEFSISDTYSNISNAITDDRRAIDLIFSALDELGIEPKVIPMRGGTDGAALSAKGLLTPNFFTGAHNFHSRFEFLPLRAFEASYNVALRLCLLAAK
>NZ_CP011077.1|WP_045782328.1|2037526_2039122_+|ABC-transporter-substrate-binding-protein
MKTKITTLALAVAALSISTSVAASTLVYCSEGSPENFNPQLYTSGTSVDASAVPVYNRLVDFKVGTTELQPSLAESWDVSEDGKVYTFHLRKGVKFQSNKYFKPGRDFNADDVIFSFMRQKDPKHPYHNVSNGNYSNFESLEFGKLITAIDKVDDNTVRFTLAHPEAPFVADLGWYFASILSAEYADAMMKAGTPERVDSDPIGTGPFELKQYQKDSRILYTAFPDYWQGKSKIDRLVFSITPDASIRYAKLEKNECQVMPFPNPADLPRMKENKDITLMQKAGLNTGFLAFNTQKPPLDNVKVRQALALAINKPAIIEAVFHGTGIEAKNLLPPGVWSADDKLKDYDYDPEKAKSLLKEAGFANGMSIDLWAMPVQRPYNPNAKRMAEMIQADWAKVGVTAKIVTYEWGEYLKRVKGGEHQAALMGWTTATGDPDNFFGPLFTCTSANGGSNSSKWCYQPFDKLILEARAEGNHDKRVALYKEAQQMMHDQMPAVMIAHSTIFEPVRKEVTGYEIDPFGKHIFYQVDVKK
>NZ_CP011077.1|WP_045782329.1|2039239_2040607_-|PTS-cellobiose-transporter-subunit-IIC
MSAKKSFLEKYVLPVALKIAGQKHVLSVRDGIILNMPFMLIGSFFLIFAYLPVPGYPQLMTDLFGATWQTKLLYPVKATYDIMAIISSFGIAYRLAEKYRTIDPLTAGAVSLVAFIMTIPQNIMFTPPSGGPAEFVKGVLPMGQIGSQGLFVAILIALLSTEIYRFISNRNLVIRMPEGVPPAVAKSFLALVPGFCVLAVVLALRLLVEATPFGDINTMITDLVGIPMSHIGGSLPGMIVSVILIGILWTLGLHGDTIVLVFIRPVWLTNMSENLAAFQNGLPIPHIITQQFYDLWIAPGGTGALLGLVIFMLIRSRSVQMKQLGKIAAPGSLFNISEPMVFGIPLVMNPYLVVPFILTPVVLVIVSYTAMATGLVAPPAGIALPFTTPIIVSGYLATGGHVSGSILQIVNLAISLVMYYPFFRVWDNLKFREEQQANQAASTAPVEAVSERSTV
>NZ_CP011077.1|WP_045782330.1|2040699_2042001_-|6-phospho-beta-glucosidase
MKITVVGGGSSYTPELIEGLILRHAVLPMTELALVDVEAGRQKVEIIAALARRMFDSKGLDQVNVTVHYEPDTAIAGSSFVLTQLRVGQLPARAADERLGLSHELLGQETTGVGGFAKALRTIPVMLDIAQRVERLAPNAWIINFTNPAGIVTEAVSRYSSARIVGLCNVPVTMHHTIADMLKLPYDKVTLRFAGLNHMVWVHEVIADGRDATTEVIEMLCDGEQLSMNNIKAIPWPPALLRALKAIPCPYHRYFWQTRTMLKDELADAANGKGTRAEQVMKVEAELFELYANPQLDKKPEQLSQRGGSFYSEVALELIDALYNNLGKQMVVNTVNNGAIQGLPDDAVIETNCVIDALGAHPLAFGKLPPLMNGLTQQVKDFERLTIEAAVHGDKQQALLALIANPLVADVNIAQTLLDEVLESNKAWLPQFN
>NZ_CP011077.1|WP_045782331.1|2042017_2042323_-|PTS-sugar-transporter-subunit-IIB
MKKIMLCCAAGMSTSMLVQKMRTEATKRALDVQIDAVSVAEIESHLQGADVVLLGPQVQFELARLSELSAPLGKPVAVIDMMDYGTMRGDRVLDKALTLMA
>NZ_CP011077.1|WP_052698914.1|2042572_2043688_+|MurR/RpiR-family-transcriptional-regulator
MDIVYHLVHGLADSSPQETRLARFFLENFFQLPDATMEQLAARAGVSQATLQQFARTIGCSDMNDFLGQVRHQQHDSRVQELLAAPSQVLGDAAWVDNDTLQFLANRGGVAKDVLARFSHSIGRDTEGDIISRIRQRLAEFSQQEARVAQAILHDPGFASSATIDQLAQAAGVSPATITRFARAAGCDDIRDLRMKLAQASTAMPGSELPASWQQRLSGIQQSLTQQLETLPEANVARAASLLKRAKAIHIFSAGAADTPFASLLQYRLLTQGQPASVCYDPALMSFTASMLNHEQAMIIFASSTPDSTLLAAVQQARRQGTAIVMVTKDPASTVHAGDVWLPPGEGAYGALLIVDLLCEGATPDSDERKI
>NZ_CP011077.1|WP_045782332.1|2043776_2044445_+|DUF3313-domain-containing-protein
MRTTTYFKVACLAGLLALAGCASKTTSPEKYSGFLKDYSGLQEAKSATGKTVMRWVDPNFKPGNYDSLVYNPVVYYPTPKPTTQIGQQTLDGLLAYTNTKLKAAAAQRKPLVTTAGPRSLIFRGAITGVDSTKEGLQYYEVIPIAMVVAGTQMATGHRTMNTDLYFEGELIDAATNKPVLRVVRKGEGKTLSNENAKVTVDTLKQVVDDLATDATMFDVPNK
>NZ_CP011077.1|WP_045782333.1|2044495_2045395_-|DMT-family-transporter
MNALLYILVVVIWGTTWIAIYMQQGVVSVPVSIFWRFAVAAVVMLVVLLALGRLKRIGLKDHLFCVLQGACVFGFNFFCFYHAAAYISSGLESVIFSMAVLFNAFNNFLFFRKKPSPRVLPAAALGIAGIVALFWHDLAATQMAPSLLNGIGLSALGTFGFSLGNMISARHQSRGLETLSTNTYAMFYGTAIMGMVALASGESFMPDLTLRYIGSLLYLAIFGSVIAFGAYFTLIGRIGASQAAYSTLLFPLVALTLSTLYEGYVWHANAVLGLVMILLGNLVMFAKPEQWLPWRRKLA
>NZ_CP011077.1|WP_045782334.1|2045567_2046440_+|helix-turn-helix-transcriptional-regulator
MTAPYHAFENLQQHKARLNGSVQLGSGIQLAAWSNGNDCITQRCDHHTLSLYVTEGYETYQKTASGWRNGGGPDRFCIMPEDSESTWDVRDDFSFVHLYCTDEHLKEIAAQIWDRSPAAINLDEKTFADDPRITQLYRHFLLSSDWQQRANHLTLSTASTLLLTHLVQHYSSVQWKLPTVRGGLSPAVLRNAQAYIEQNLSEALTLSELARLADLSEYHFARMFKQSTGQAPHQYVMQRRMAKAETLVRQGKLPLTDIAMACGFSSPSHFSNRFKSVFGATPSQLRALKP
>NZ_CP011077.1|WP_071844374.1|2046419_2047628_-|benzoate/H(+)-symporter-BenE-family-transporter
MLYSPDVITHNESNMRLYLPPFPTVLAGFVAVLVGYASSAAIIWQAADAAGASPPQIAGWLTMLGLAMGISTLGLTLWYRAPILTAWSTPGAALLATSLPGYSLNEAVGIFIFASLLILMCGVTGLFARLMRLIPPTLSAAMLAGVLLRFGLDTFTSLQGHFLLCVSMLAGWLLAKVFAPRYAVVVAMLIGLLICFASGELTAGSVPVSVAVPEFIAPSFSLASLLGIGVPFFLVTMASQNAPGVATLAASGYKVPVSPLIVVTALIALLLAPFGVFSVCIAAITAAICQSAEAHPDKDKRWLAAAAAGAFYLLAGVFGGAISTLLTALPLAWIHTLAGLALLGTIAGSLHQALNHERDRDSAIVTFLVTASGVNLLGVSSAFWGVIAGGVCYTALSGLKRA

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Crispr_ID: NZ_CP011077_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011077_4

3250015-3250093

Orphan

Consensus_repeat	Method
GAGGGAGAGGGTGCAAAACAATCGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011077_4

>merge|NZ_CP011077|4|3250015-3250093|CRISPRCasFinder
GAGGGAGAGGGTGCAAAACAATCGAACTGCCTTGTCTTATCCCTACCCCTTGGAGGGAGAGGGCGCAAAACAATCGAAC

>NZ_CP011077|4|4|3250015-3250093|CRISPRCasFinder
GAGGGAGAGGGTGCAAAACAATCGAAC	TGCCTTGTCTTATCCCTACCCCTTG
GAGGGAGAGGGCGCAAAACAATCGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011077.1\|WP_045783208.1\|3245935_3246361_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NZ_CP011077.1\|WP_045783217.1\|3257130_3257514_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183420
NZ_CP011077.1\|WP_039295317.1\|3246471_3247584_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|183270
NZ_CP011077.1\|WP_045783205.1\|3241551_3242553_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381374
NZ_CP011077.1\|WP_045783218.1\|3259765_3260506_-\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|377682
NZ_CP011077.1\|WP_008455208.1\|3257758_3259084_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838
NZ_CP011077.1\|WP_045783216.1\|3255897_3257019_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP011077.1\|WP_045783204.1\|3240260_3241484_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP011077.1\|WP_045783209.1\|3247746_3249783_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP011077.1\|WP_045783213.1\|3253046_3253811_+\|DNA-binding-transcriptional-repressor-DeoR	unknown	unknown	gnl\|CDD\|182644
NZ_CP011077.1\|WP_045784687.1\|3244957_3245242_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011077.1\|WP_045783207.1\|3243721_3244732_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_CP011077.1\|WP_045783210.1\|3250199_3251432_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|185300
NZ_CP011077.1\|WP_045783212.1\|3252344_3252953_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|183335
NZ_CP011077.1\|WP_008455188.1\|3245293_3245767_-\|DUF1456-family-protein	unknown	unknown	gnl\|CDD\|227144
NZ_CP011077.1\|WP_045783206.1\|3242642_3243554_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NZ_CP011077.1\|WP_148674379.1\|3253815_3255006_-\|serine-type-D-Ala-D-Ala-carboxypeptidase	unknown	unknown	gnl\|CDD\|182189
NZ_CP011077.1\|WP_045783215.1\|3255269_3255896_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP011077.1\|WP_045783203.1\|3239833_3240250_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_CP011077.1\|WP_045783211.1\|3251625_3252348_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|226422

Protein	Function_ID	Function_description	E-value
NZ_CP011077.1\|WP_045783208.1\|3245935_3246361_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	8.79126e-17
NZ_CP011077.1\|WP_045783217.1\|3257130_3257514_-\|hypothetical-protein	gnl\|CDD\|183420	PRK12302, bssR, biofilm formation regulator BssR.	1.05543e-34
NZ_CP011077.1\|WP_039295317.1\|3246471_3247584_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
NZ_CP011077.1\|WP_045783205.1\|3241551_3242553_-\|aldo/keto-reductase	gnl\|CDD\|381374	cd19148, AKR_AKR11B1, Bacillus subtilis aldo-keto reductase YhdN and similar proteins. Bacillus subtilis YhdN, also called general stress protein 69 (GSP69), is a founding member of aldo-keto reductase family 11 member B1 (AKR11B1). It acts as an aldo-keto reductase (AKR) that catalyzes the reversible reduction of ketones to the respective alcohols using NAD(P)H as a hydride donor.	0
NZ_CP011077.1\|WP_045783218.1\|3259765_3260506_-\|MipA/OmpV-family-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	5.79083e-38
NZ_CP011077.1\|WP_008455208.1\|3257758_3259084_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0
NZ_CP011077.1\|WP_045783216.1\|3255897_3257019_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	0
NZ_CP011077.1\|WP_045783204.1\|3240260_3241484_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	2.65215e-94
NZ_CP011077.1\|WP_045783209.1\|3247746_3249783_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP011077.1\|WP_045783213.1\|3253046_3253811_+\|DNA-binding-transcriptional-repressor-DeoR	gnl\|CDD\|182644	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional.	1.01552e-174
NZ_CP011077.1\|WP_045783203.1\|3239833_3240250_-\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	2.37344e-29
NZ_CP011077.1\|WP_045783207.1\|3243721_3244732_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	5.24515e-90
NZ_CP011077.1\|WP_045783210.1\|3250199_3251432_-\|MFS-transporter	gnl\|CDD\|185300	PRK15402, PRK15402, MdfA family multidrug efflux MFS transporter.	0
NZ_CP011077.1\|WP_045783212.1\|3252344_3252953_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|183335	PRK11837, PRK11837, undecaprenyl pyrophosphate phosphatase; Provisional.	6.38168e-125
NZ_CP011077.1\|WP_008455188.1\|3245293_3245767_-\|DUF1456-family-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	1.41414e-82
NZ_CP011077.1\|WP_045783206.1\|3242642_3243554_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.70494e-87
NZ_CP011077.1\|WP_148674379.1\|3253815_3255006_-\|serine-type-D-Ala-D-Ala-carboxypeptidase	gnl\|CDD\|182189	PRK10001, PRK10001, serine-type D-Ala-D-Ala carboxypeptidase.	0
NZ_CP011077.1\|WP_045783215.1\|3255269_3255896_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	5.83083e-46
NZ_CP011077.1\|WP_045783211.1\|3251625_3252348_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|226422	COG3907, COG3907, PAP2 (acid phosphatase) superfamily protein [General function prediction only].	1.27967e-63

>NZ_CP011077.1|WP_045783209.1|3247746_3249783_+|methionine--tRNA-ligase
MTQPAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGNEVNFICADDAHGTPIMLKAQQLGITPEQMIAEMSQEHQTDFAGFNISYDNYHSTHSDENRELSELIYGRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKAPDQYGDNCEVCGSTYSPTELIDPKSVVSGATPEMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDTTSFDEYWKKDSTTELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKMSKSRGTFIKASTWLKHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNSDIVNKVVNLASRNAGFIAKRFDGVLAADIADAELYKTFTDAAESIGEAWDSREFGRAIREIMALADIANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPSLTERAEAFLNAELSWDSIATPLLNHKVNSFKALYNRIETKQVEALVEASKEEVKALNSTPVTGPLADDPIQETITFDDFAKVDMRIALIEKAEFVDGSDKLLRLTLDLGGEKRNVFSGIRTAYPDPSKLEGRLTVMVANLAPRKMRFGVSEGMVMAAGPGGKDIFLLSPDSGAQPGMAVK
>NZ_CP011077.1|WP_039295317.1|3246471_3247584_-|iron-sulfur-cluster-carrier-protein-ApbC
MNSQSPSSKSPEQLRAMVAGTLANFQHPTLKHNLTALKALHHVAMLDDTLHVELQMPFAWQSGFDALKETCSSDLLRITGAKAVDWKLSHHIATLKRVKNQPGINGVKNIIAVSSGKGGVGKSTTAVNMALALAAEGAKVGILDADIYGPSIPTMLGAEHERPTSPDGKHMAPIVAHGLATNSIGYLVTDENAMVWRGPMASKALMQMLQETLWPDLDYLVIDMPPGTGDIQLTLAQNIPVTGAMVVTTPQDIALIDARKGIVMFEKVEVPVVGIVENMSIHICSNCGHQEPIFGTGGAEKLAQQYHTTLLGQLPLHITLREDLDAGKPTVINRPESDITTLYRELAGRVAAQLYWNGDVIPSEIAFRAV
>NZ_CP011077.1|WP_045783208.1|3245935_3246361_+|GNAT-family-N-acetyltransferase
MILRLWQESDRPFLRTLYLQARRKAWPWLDGGAWQLEDFDSATQDERIWVAEENGHRIGFASVWVQDNFLHNLFVSPEYQRTGAGKALLEKVQGEFTGTGSLKCLAKNEHAIEFYRRNGWHIEAPGDGPDGEYYLMHFVLR
>NZ_CP011077.1|WP_008455188.1|3245293_3245767_-|DUF1456-family-protein
MLNNDVLLSVRYMLNLNNDGIVKILALTGTDVPAEQIVPWLKKEDEEGFKACPDLIMANFLNGLIYFKRGKDESKPEPKLERRMTNNIILKKLRIAFELKSDDVLEILTAQQFRISMPEITAMMRNPDHKNYRECGDQFLRYFLRGLTQRLKPAKAE
>NZ_CP011077.1|WP_045784687.1|3244957_3245242_+|hypothetical-protein
MKMLVLSLGLVSGLASAALPLFNGQGAPGEVHIDNGGPVYLNGKQMALKKVNDSFYEARGQGVVLSIAVMPDGSPSVSWTGKHRAHGEIIPAEK
>NZ_CP011077.1|WP_045783207.1|3243721_3244732_+|alpha/beta-hydrolase
MSRSLLLAMGLTASSLASAYAADVPVPTVGVSKFLSALNSGGGKPIEQLSPQAARQVLIGAQKGATLPAAEVSEKTITVGGKPLTLTIVKPKNASGTLPVFMFFHGGGWVLGDFQTHERLVRDLVVESGAAAVFVNYTPSPEAHFPVAINQAYEATRWVAEHGSEIGVDGSRLALAGNSVGGNMVAAVALQAKAQHTPAIRYQVMLWPVTDARFDTGSYNQFSNGYFLSKNMMKWFWDNYTTNESDRRNILASPLEASREQLKGLPPTLIQTAELDVLRDEGEAFGRKLDAAGVPVTVTRYNGMIHDYGLLNAISGEPTVRTAIAQAAGELRAHLN
>NZ_CP011077.1|WP_045783206.1|3242642_3243554_+|LysR-family-transcriptional-regulator
MPAPVRGELADLNVFLTICRRKSFRLAASELGVSTSALSHTMRGLEERLGVRLLNRTSRSVVPTDAGEALLGHLETGFSHIRMALDELDHYRESPVGRLRINIPRDAAQLLFAPVLAKFMAMYPRLQMEITVDNTLVDIIGSGYDAGIRYGESVPKDMIAMPVTRKLRWIVVASPQYLTNTAHLPLEKPDDLFQHQCIRMRLGNGTLYKWELNRGKEALALDVPGSLILNESEMIIDTALNGFGLAYCLDVRVRPLLESGQLVQAIPEWVCEDEPMVMYYPSRRQLHPGLRRLIEMMREATLY
>NZ_CP011077.1|WP_045783205.1|3241551_3242553_-|aldo/keto-reductase
MAIETIHIAGISEPVSRIGLGTWAIGGSMWGGSNDEQSIATLHAALECGINLIDTAPVYGFGHSEEVVGKALVGRRDKAIIATKVALDWDDAGRVTRNSTPQRIRQEIEDSLRRLQTDYIDLYQVHWPDDLVAIDETARVLETLHQQGKFRALGVSNYSPAQMDRFRSAAPLATMQPPLNLFERGATETDLLPYAKYHQMVVLAYGAICRGLLSGRMTPETVFGEGDLRSFDPKFQPPRFAQYLAAVETLKAFAAERYGKSVMALALRWVLDAGPTIALWGARRPEQLSGVEDVSGWTLTAEDKHDIDLILDKHISTPLGAEFMAPPHRKTSL
>NZ_CP011077.1|WP_045783204.1|3240260_3241484_-|MFS-transporter
MSSPNEQALEQGAETVSLSRSGLLKALFALGMGGFAIGTGEFVIMGLLPDAANGLHVSIPSAGHLISIYALGVVVGAPLLAVLGARMARRDFLIALMAMFAVGNLLSAFAPGYYSMMLARFLAGFPHGTFFGVAALLAASLVERSKRAQAVSMVLLGLTIANLLGVPAVAAIGQLFGWRSAFAIVGGLAVLTLILVRAWVPWRAGDKDASPLRELTALTRKQVLLTLAIGAIGSGGMFSVFSYVKPTMLELAHQSVGMIPVILSMFGLGMIVGNIVGGRLADRGLEKTVRLLLIWAILVLSAYVYTSHYPWLGAVTVMLVGTMVSLSSVLQIRLMDVAGDAQTMAAAMNHSAFNIANALGAWLGGVTISAGFGWESTGWVGAILAVFGLLIHTWAVVDAKKRPPLAH
>NZ_CP011077.1|WP_045783203.1|3239833_3240250_-|heme-binding-protein
MTVSLVLAEALIARVKTAVEIHSFPPVSVVVLDSGGHLTAFARMDGTFLATIDIAMRKARTAVLFQANSEDVGVNLHPNGPAYSLENSNGGLVGIDGGIPLRNAEGAVIGAIGVSGATKEQDGQIAAFAVEAVFGSGD
>NZ_CP011077.1|WP_045783210.1|3250199_3251432_-|MFS-transporter
MQHNTIANKSLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVVDQFQAGVEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLTGVVWFIVTCLATLLAQDIQQFTFLRFLQGVSLCFIGAVGYAAIQESFEESVCIKITALMANVALIAPLLGPLVGAAWIHVAPWETMFVLFALLAAISFFGLHKAMPETATRLGEKLSLKELGHDYKLVLKNLRFVSGALATGFVSLPLLAWIAQSPVIIISGENLSSYEYGLLQVPIFGALILGNLVLAKLTSRRSVRSLIIMGGWWIVPGLIVAAVATVASSHAYLWMTAGLSLYAFGIGLANAGLVRLTLFASEMSKGTVSAAMGMLQMLIFTVGIELSKHAYQFGGNGLFSLFNLLGGLIWLGLMVLFLKDKTVGQARDA
>NZ_CP011077.1|WP_045783211.1|3251625_3252348_+|phosphatase-PAP2-family-protein
MKCFPKPTVNKTKLLYRLPPRFYLFQLCILIILAAVFSWLSRDEGLDRWLTGLWFDAASRSFPLQNDRLMDLLNHRLLKDLVIAGGVIALLWGVWRRQPRLVVVALLIGLGALTVGVLKGFSHHSCPWSLVEYGGNAASYPLFGMAPADSGPGRCFPGGHASSGFGVMALFFLFYRERPRLAWFFLGLGVFLGLSMGYGQVMRGAHFFSHNLWAGWWVWLTQVVLYGAISTWSVKAQDKS
>NZ_CP011077.1|WP_045783212.1|3252344_3252953_+|undecaprenyl-diphosphate-phosphatase
MMEMLNQNLFLLINATPSSPEWMIKLAIFLARDLISIVPLLIVVLWLWGQRKQMPAQRQVVIKTGMALVISVVLSWIIGHLFPHPRPFVVGLGYNFLHHAPDDSFPSDHGTVIFTFALAFLCWHRIWSGVMLFAIGCAIAWSRVYLGVHWPLDMLGGLLVGMSACLLSQIVWNLRGPQIHQRLHQIYRYCFALPIRKGWVRD
>NZ_CP011077.1|WP_045783213.1|3253046_3253811_+|DNA-binding-transcriptional-repressor-DeoR
METRRDERITRLVQALKRSDKIHLKEAAQLLGVSEMTIRRDINSEPGQVVLLGGYVVLEPRSAGASHYLLSDEKTRQVEEKRHAARLAAQHVRPRQTVFFDCGTTTPYIIDALDDDLPFTGLCYSLNTFLALQDKPNCRVILSGGEFHASNAIFNPISFQECLGNICPDIAFLSAAGVHLRYGATCFNLNELAVKHWALSMAQRKILVVDDTKFGKVRPACMGPLTAFDTLITNRPPAAEFIDFAAAENLTLEW
>NZ_CP011077.1|WP_148674379.1|3253815_3255006_-|serine-type-D-Ala-D-Ala-carboxypeptidase
MPATLRGLVAGTTLLLIAAPALSAEQTADAPQVDAKAWILMDYASGKVLAEGNADDKLDPASLTKLMTSYVVGQALKAGKIHLTDMVTIGKDAWATGNPVLRGSSLMFLKPGDKVSVEDLNKGVIIQSGNDASIAIADYVAGSQDSFVSLMNNYAQKLKLTNTTFKTVHGLDAPGQYSTARDMALLGQALIHDVPEEYAVHKEKEFTFNNIKQPNRNRLLWSSNLNVDGMKTGTTEGAGYNLVASATSGDMRLISVVLGTKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEGGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQAVGTIDFQLNGKSIEQRPLLVMEPVEEGGFLSRMWDFVLMKLHGWFGSWFS
>NZ_CP011077.1|WP_045783215.1|3255269_3255896_+|glutathione-S-transferase-family-protein
MITVWGRDNSTNVKKVLWCLEELQLPYRSVPAGGKFGLTHDADYLAMNPNGLVPCIHDDAYGLTLWESNTIVRYLAAEYGRDSLWVNAPAERAKGEKWMDWSATAVSGPYRGVYASLVRTPPEERDSKLIEQSIAACNKLFAIADAELAKQPWLGGEAFGLGDLAFGPQIYSLLNLDIPWDAVPNLQRWYQQLTQRPAFKKIVMIPLT
>NZ_CP011077.1|WP_045783216.1|3255897_3257019_-|PQQ-dependent-sugar-dehydrogenase
MPPFPSRTLIAATLLFSASFTLAAKTNVEVLQTDLPHPWALDFLPDNQGMLITLRGGELHLWQQDKGLSAPISGVPVVWAHGQGGLLDVVLAPDFASSRRVWLSFAEGGSDNKAGTAVGYGTLSQDLKRLENFKVVFRQTPKLSTGNHFGGRMAFDGQGHVFIALGENNERATAQDLDKLQGKVVRLNAEGGIPQDNPFVGKPGARPEIWSYGHRNPQGLAINPANGELWLNEHGPRGGDEINIPAAGKNYGWPLATWGVNYSGLKIPEAKGGEVEGTEQPIHYWKVSPAISGMAFYSADTFPQWKGKLFIGALKEKNLIELTLDGDKVTGEQRLLGDRKKRIRDVRVGPDGYLYVLTDESDGELLKISPTES
>NZ_CP011077.1|WP_045783217.1|3257130_3257514_-|hypothetical-protein
MSGRTLKNDLLQKLKVAKGEIAAYLALRKAKGYMSVSESELLRGRLLDVCHRSHDAAFMLQASLPDDEKDDFRHAVEACSSAALCLMSGRKDCPQYIAVDAAKLEASLMLLSRSLNALAARGKAIEA
>NZ_CP011077.1|WP_008455208.1|3257758_3259084_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MSNVTQQPRIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLQHVHHYVPKPQHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSRPIGDVLAEAKRLVEAGVKELLVISQDTSAYGVDVKHRTGFWNGAPVKTSMVSLCEQLAKLGVWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSADRQLQRIKQWREICPDLTLRSTFIVGFPGETEEDFEMLLDFLKEARLDRVGCFKYSPVDGATANELPDQVPEEVKEERWNRFMQLQQKISAERLQEKVGREILVMVDEVDEEGAIGRSMADAPEIDGAVYLNGETKLKPGDVVRVKVENADEYDLWGSVV
>NZ_CP011077.1|WP_045783218.1|3259765_3260506_-|MipA/OmpV-family-protein
MRKITGALLLSPLLITTACPAANWSLGAQGGLYQTPYQTRHQLRWALPYVGYDGKTWYLDGTEAGYNFINTDTLLLRAKVYYYDTLYRADTGQTPALRGLNNRHSTMMGGMTMQYTTPIGAFSATLAGDTLGVSNGVTANSAYIALAQWGDFTLVPEAGMDFSNAQNTRYYYGVSEKESAKTGLATWRPQGSIVPYAQLAMNYAWTPLWNTWAQFTQRFYPSAISDSPMVNKNNLRELTVGMSYTF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1389776 : 1429834

Cronobacter_phage(20.0%)

protease,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045781828.1\|1389776_1391117_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_045781829.1\|1391113_1391803_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_045781830.1\|1391799_1393503_+	OmpA family protein	NA	NA	NA	NA
WP_045781831.1\|1393507_1393999_+	type VI secretion system effector Hcp	NA	NA	NA	NA
WP_045781832.1\|1394172_1396827_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	9.4e-96	32.4
WP_045781833.1\|1396823_1399316_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.3e-19	33.8
WP_045781834.1\|1399570_1401493_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	1.7e-59	30.5
WP_045781835.1\|1401493_1401757_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_045781836.1\|1402511_1403252_+	hypothetical protein	NA	NA	NA	NA
WP_045781837.1\|1405501_1405765_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_045781838.1\|1405764_1407195_+	hypothetical protein	NA	NA	NA	NA
WP_045781839.1\|1407200_1410620_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_045781840.1\|1410619_1412221_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_045781841.1\|1412269_1414024_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_045781842.1\|1413987_1415073_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_045781843.1\|1415050_1415596_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_045781844.1\|1415595_1416051_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_045781845.1\|1416466_1417891_+	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_148674361.1\|1418489_1419422_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	2.8e-132	80.5
WP_045781847.1\|1419632_1420238_+	cytochrome c biogenesis heme-transporting ATPase CcmA	W5SAS9	Pithovirus	2.0e-09	28.3
WP_045781848.1\|1420234_1420894_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_045781849.1\|1420923_1421664_+	heme ABC transporter permease	NA	NA	NA	NA
WP_045781850.1\|1421660_1421873_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_045781851.1\|1421873_1422353_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_045781852.1\|1422349_1424305_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_045781853.1\|1424301_1424859_+	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_045784555.1\|1424858_1425932_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_045781854.1\|1425945_1426704_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_045781855.1\|1426871_1428824_+\|protease	protease modulator HflK	NA	NA	NA	NA
WP_045781856.1\|1428820_1429834_+\|protease	protease modulator HflC	NA	NA	NA	NA

DBSCAN-SWA_2

1488275 : 1497659

Dickeya_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045781904.1\|1488275_1489391_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	39.8
WP_045781905.1\|1489387_1491334_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	7.7e-39	42.3
WP_008461102.1\|1491412_1491634_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
WP_008461103.1\|1491957_1492278_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.4e-14	47.2
WP_045781906.1\|1492305_1494579_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.6e-166	42.4
WP_002211347.1\|1494676_1494895_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_045781907.1\|1495180_1495876_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_045781908.1\|1495937_1497659_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	F2Y2R6	Organic_Lake_phycodnavirus	9.6e-17	23.6

DBSCAN-SWA_3

1885935 : 1897079

Pseudomonas_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008456585.1\|1885935_1887864_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	6.7e-128	37.4
WP_071530481.1\|1887867_1888410_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.1e-16	34.1
WP_006118955.1\|1888501_1888699_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_000124850.1\|1888743_1889100_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_187107652.1\|1889320_1889389_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_045782215.1\|1889523_1890507_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.1
WP_045782216.1\|1890521_1892909_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.8e-05	25.0
WP_001229265.1\|1892913_1893213_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_045782217.1\|1894077_1895583_-	hypothetical protein	A0A125RNN9	Pseudomonas_phage	2.8e-60	38.3
WP_045782218.1\|1895591_1897079_-	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	2.3e-144	53.4

DBSCAN-SWA_4

3162378 : 3170689

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045783144.1\|3162378_3163596_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.3e-12	24.8
WP_045783145.1\|3163585_3164386_-	ABC transporter permease	NA	NA	NA	NA
WP_045783146.1\|3164398_3164947_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.6e-53	58.0
WP_045783147.1\|3164950_3165823_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.2e-37	36.5
WP_045783148.1\|3165832_3166702_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.8e-108	66.3
WP_045783149.1\|3166715_3167804_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.3e-99	52.6
WP_045783150.1\|3168190_3169090_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-49	41.4
WP_045783151.1\|3169264_3170689_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-18	33.7

DBSCAN-SWA_5

3781956 : 3802134

uncultured_Caudovirales_phage(33.33%)

lysis,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045784708.1\|3781956_3782517_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.3e-84	83.6
WP_045783573.1\|3784722_3785403_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	1.5e-98	75.7
WP_045783574.1\|3785399_3786599_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	9.9e-154	71.2
WP_045783575.1\|3786599_3786950_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	7.6e-30	56.4
WP_045783576.1\|3788694_3789003_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	7.1e-24	53.0
WP_045783577.1\|3789012_3789591_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-33	44.9
WP_045783578.1\|3789590_3791342_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	5.3e-63	34.5
WP_045783579.1\|3791519_3791933_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.4e-38	59.7
WP_045783580.1\|3791936_3792377_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	2.5e-46	64.4
WP_045783581.1\|3792387_3793527_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.6e-127	61.3
WP_045783582.1\|3793530_3794070_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	4.0e-38	43.0
WP_045783583.1\|3794271_3795150_-	triacylglycerol lipase	NA	NA	NA	NA
WP_045783584.1\|3795357_3795816_-\|lysis	lysis protein	Q2A0C4	Sodalis_phage	1.9e-20	44.6
WP_045783585.1\|3795812_3796304_-	lysozyme	A0A2H4JCH1	uncultured_Caudovirales_phage	5.1e-40	52.8
WP_045783586.1\|3796303_3796603_-	hypothetical protein	O64361	Escherichia_phage	7.4e-18	45.9
WP_045783587.1\|3796655_3796991_-	antitermination protein	Q716D8	Shigella_phage	7.1e-17	49.1
WP_045783588.1\|3797355_3798102_-	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	1.1e-46	46.3
WP_045783589.1\|3798364_3798625_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	4.2e-17	50.0
WP_008459499.1\|3798621_3799002_-	holo-ACP synthase	NA	NA	NA	NA
WP_045783590.1\|3799001_3799733_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_045783591.1\|3799807_3800545_-	DNA repair protein RecO	NA	NA	NA	NA
WP_008459503.1\|3800548_3801457_-	GTPase Era	NA	NA	NA	NA
WP_008459505.1\|3801453_3802134_-	ribonuclease III	A0A0P0YM82	Yellowstone_lake_phycodnavirus	4.3e-21	29.7

DBSCAN-SWA_6

4107785 : 4116979

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016239675.1\|4107785_4108352_+	helix-turn-helix domain-containing protein	M1PL54	Cellulophaga_phage	7.2e-38	44.9
WP_004114867.1\|4108441_4109017_-	hypothetical protein	NA	NA	NA	NA
WP_001530776.1\|4109028_4110483_-	hypothetical protein	A0A0R6PHE0	Moraxella_phage	5.8e-23	28.3
WP_148674384.1\|4110642_4113210_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.1e-29	21.2
WP_008458325.1\|4113278_4114271_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_045783779.1\|4114327_4115467_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	6.6e-06	35.6
WP_045783780.1\|4115597_4116224_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.4e-34	48.8
WP_039287134.1\|4116217_4116979_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-52	45.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011077

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection