CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011117	Pseudomonas synxantha strain LBUM223 chromosome, complete genome	3 crisprs	RT,WYL,DinG,csa3,DEDDh,PD-DExK,cas3	0	0	16	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011117_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011117_1

101504-101609

Orphan

Consensus_repeat	Method
CAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011117_1

>merge|NZ_CP011117|1|101504-101609|CRISPRCasFinder
CAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCCCGACAGCCGACCAGTATTTGACTGATGGTCTCGGTCCAAATGTGGGAGGGGGCTTGCTCCCGATGGCGGCC

>NZ_CP011117|1|1|101504-101609|CRISPRCasFinder
CAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCC	CGACAGCCGACCAGTATTTGACTGATGGTCTCGGTC
CAAATGTGGGAGGGGGCTTGCTCCCGATGGCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011117.2\|WP_046067949.1\|89684_90197_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP011117.2\|WP_046067955.1\|104351_105098_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180411
NZ_CP011117.2\|WP_046067952.1\|93753_96855_+\|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NZ_CP011117.2\|WP_080944605.1\|109665_110814_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369942
NZ_CP011117.2\|WP_046067957.1\|105640_107050_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP011117.2\|WP_046067958.1\|107208_108618_-\|cytochrome-c-oxidase-accessory-protein-CcoG	unknown	unknown	gnl\|CDD\|274278
NZ_CP011117.2\|WP_046067951.1\|92458_93757_+\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NZ_CP011117.2\|WP_046067959.1\|108803_109043_-\|DUF3203-family-protein	unknown	unknown	gnl\|CDD\|314397
NZ_CP011117.2\|WP_046067950.1\|90278_91568_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|274425
NZ_CP011117.2\|WP_046067953.1\|96851_99959_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|182589
NZ_CP011117.2\|WP_046067956.1\|105107_105563_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011117.2\|WP_046067947.1\|88209_88578_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011117.2\|WP_003190967.1\|91726_92227_+\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP011117.2\|WP_046067961.1\|111362_113351_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl\|CDD\|200482
NZ_CP011117.2\|WP_046067954.1\|102200_104297_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_CP011117.2\|WP_046067946.1\|87779_88148_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011117.2\|WP_046067960.1\|109162_109660_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP011117.2\|WP_046067948.1\|88625_89531_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380381
NZ_CP011117.2\|WP_046067962.1\|113435_116783_+\|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl\|CDD\|274140
NZ_CP011117.2\|WP_080944604.1\|99955_101497_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830

Protein	Function_ID	Function_description	E-value
NZ_CP011117.2\|WP_046067949.1\|89684_90197_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.13092e-14
NZ_CP011117.2\|WP_046067955.1\|104351_105098_+\|SDR-family-oxidoreductase	gnl\|CDD\|180411	PRK06123, PRK06123, SDR family oxidoreductase.	8.92958e-119
NZ_CP011117.2\|WP_046067952.1\|93753_96855_+\|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP011117.2\|WP_080944605.1\|109665_110814_-\|hypothetical-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	8.65414e-15
NZ_CP011117.2\|WP_046067957.1\|105640_107050_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.57367e-151
NZ_CP011117.2\|WP_046067951.1\|92458_93757_+\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	8.64039e-146
NZ_CP011117.2\|WP_046067959.1\|108803_109043_-\|DUF3203-family-protein	gnl\|CDD\|314397	pfam11462, DUF3203, Protein of unknown function (DUF3203). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.12798e-19
NZ_CP011117.2\|WP_046067950.1\|90278_91568_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	1.81093e-16
NZ_CP011117.2\|WP_046067953.1\|96851_99959_+\|MMPL-family-transporter	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
NZ_CP011117.2\|WP_046067958.1\|107208_108618_-\|cytochrome-c-oxidase-accessory-protein-CcoG	gnl\|CDD\|274278	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.	0
NZ_CP011117.2\|WP_003190967.1\|91726_92227_+\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	1.16876e-101
NZ_CP011117.2\|WP_046067961.1\|111362_113351_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP011117.2\|WP_046067954.1\|102200_104297_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	7.77563e-121
NZ_CP011117.2\|WP_046067960.1\|109162_109660_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	4.01125e-44
NZ_CP011117.2\|WP_046067948.1\|88625_89531_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|380381	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain. MtlR is a Pseudomonas fluorescens protein that acts as a transcriptional regulator of the mannitol utilization genes. It has an N-terminal cupin domain (represented by this alignment) and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	4.05953e-38
NZ_CP011117.2\|WP_046067962.1\|113435_116783_+\|maltose-alpha-D-glucosyltransferase	gnl\|CDD\|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP011117.2\|WP_080944604.1\|99955_101497_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.2879e-114

>NZ_CP011117.2|WP_080944604.1|99955_101497_+|efflux-transporter-outer-membrane-subunit
MTDSINAPAIPVGASLLAKNAHTPRSSRRNALSLTAFASKLAPTVGLAMLLSACAIGPDYQRPEVIEPVQFKEAQGWRQANPSDSLARGAWWELYGDRQLNDLVVRLNTSNQTVAQAEARFRQAQALVRSSRGAFYPSVDLSVGKTRASQGTGSSSASLSSSSSGIRDTLNAQLGVSWEADIWGKLRRGLEANEASAEASSADLAAMRLSQQSELVQSYLQLRVMDEQTRLLQATLDTYQRSLKMTENQYRAGVAGKDAIAQAQTQLKTTQASLIDLIWQRAQLENAIAVLIGEAPANFNLAVSKEIPALPQIPVSLPSQLLERRPDIASAERSVIAANANIGVAKAAYYPDLSLSLQGGYSSSTYEDWISLPNRFWSVGPKLAMTLFDGGQRSAEVDRTVASYDETVAKYRQTVLDGFREVENYMVQLKVLADEAVVSNEALESARESLRLTENQYKAGLIAYLDVVTVQATALSNERTVLNLLQSRLVASVQLIAALGGGWDGQTSLAEKE
>NZ_CP011117.2|WP_046067953.1|96851_99959_+|MMPL-family-transporter
MNLSGPFIRRPVATMLLSLAIMLLGGVSFNLLPVSPLPQIDFPVIVVSASLPGASPEVMASSVATPLERSFGSIAGITTMSSSSSQGSTRVILAFDSDRDINGAAREVQAAINASRNLLPSGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLASTILSQSLSQVPGVGEVQIGGSSLPAVRIELEPKALDQYGVALDDVRNTIANANQRRPKGSLEDAERNWQIQANDQLEKAKDYEPLLIRYQDGAALRLRDIAKITDGVEDRYNSGFFNNDSAVLLVINRQSGANIIETVRQIKAQLPALQAVLPSSVKLSLAMDRSPVIAATLHEAEMTLLIAVGLVILVVYLFLGNFRASLIPTLAVPVSLVGTFAVMYLYGFSLNNFSLMALILATGLVVDDAIVVLENISRHIDEGVPPMKAAYLGAQEVGFTLLSMNVSLVAVFLSILFMGGIVTNLFREFSITLSAAIIVSLIVSLTLTPMLCARWLKPHDKHKQTGLQRWSQKVNDRMVAGYATSLDWVLRHRRLTLLSLLLTIGLNVALYVVVPKTFMPQQDTGQLIGFVRGDDGLSFSVMQPKMEIFRQAVLKDPAVLSVAGFIGGNNGTNNAVMLVRLKPISERKISAQAVIERLRKDVPLVPGGRLFLMADQDLQFGGSRDQTSAQYSYILQSGDLAALRLWYPKVVAAMRELPELTAIDAREGRGAAQVTLIVDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVMEVNPKYAQDPITLNQVQVITADGARVPLSTIAHYENSLADDRVSHEGQFASENIAFDMAPGVTVEQGTAAIERAIAKVGLPEDVIAKMAGTADAFAATQKGQPFMILGALVAVYLVLGILYESYIHPLTILSTLPSAGVGAMLAIYLTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERNDGMGPLESIRSACLLRLRPILMTTLAAILGALPLLLGTGDGAEMRRPLGLTIIGGLVFSQILTLYTTPVVYLYLDRARHRFNAWRGVRTDAALDTAL
>NZ_CP011117.2|WP_046067952.1|93753_96855_+|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit
MNLSRLFILRPVATTLSMLAIVLAGIISYRLLPVSALPQVDYPTIRVMTLYPGASPDVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFNLDINMDVAEQQVQAAINAATNLLPKDLPAPPVYNKVNPADTPVLTLAITSKTMLLPKLNDLVDTRMAQKIAQISGVGMVSIAGGQRQAVRIKVNPEALAANGLNLSDVRSLIAASNVNQPKGNFDGPTRVSMLDANDQLVSPEQYAELILAYNNGAPLRLKDVAQIVDGAENERLAAWANQNQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRVSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMLENISRYIEEGETPMAAALKGAKQIGFTLVSLTLSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQGRFYKASGAWIDWLIEAYGRKLQWVLKHQPLTLLVAIATLGLTVVLYLVVPKGFFPVQDTGVIQGISEAPQSISFAAMSQRQQELAKIILADPAVESLSSYIGVDGDNATLNSGRLLINLKAHGQRDLSAAQVITRLQPEIDKLVGIRLFMQPVQDLTIEDRVSRTQYQFSMSSPDAELLALWSGKLVQALSQLPELTDVASDLQDKGLQVYLVIDRDAASRLGVNVATITDALYDAFGQRQISTIYTQASQYRVVLQAQSGETLGPAALNQIHVKTTDGGQVRLSSLAHVEQRQAQLAIAHIGQFPAVMMSFNLAPGVALGKGVELINQTQKDIGMPVGVQTQFQGAAQAFEASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSAAVGALLALLLSGNDLGMIAIIGIILLIGIVKKNAIMMIDFALDAERNQGLDPQTAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLGRRWRKEPQRLEPVEP
>NZ_CP011117.2|WP_046067951.1|92458_93757_+|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit
MVDHSMQSSPRKSRRWLFGLLVLLVIAGLCWKFWPGGAAHKDAPAGHTGKTGMARPGFGGSTGPVPVRVAPAVLGEFPVYYKALGTVTALNTINVRSRVGGELMKIAFEEGQMVKAGDLLAEIDPRSYQNALLQAQGTLLQNQAQLKNAQVDVERYRGLYAQDSIAKQTLDTAEALVLQYQGTVKTNQGAVDDAKLNLEFTKIRAPISGRVGLRQLDVGNLVAANDTTALAVITQTQPISVAFTLPENTLETVLARYHAGNKLPVEAWDRGDTKKQAVGVLQSLDNQIDVTTGTLKFKARFDNKDQALFPNQFVNVHLLADTLHNVVLAPSAAIQFGNTGTFVYKLDGDNKVKVQPLVLGDTDGDNTVIKEGLVAGDRVVLEGTDRLKDGSEIEVVNDSSEVPTTPTEHLQGKPAAKGETGADAGKAQKVGS
>NZ_CP011117.2|WP_003190967.1|91726_92227_+|thiol-peroxidase
MAQVTLKGNPVQVEGELPKVGAKAADFTLTAGDLSNATLATFAGKRKVLNIFPSVDTPTCATSVRKFNAQANDVANTVVLCISSDLPFAQARFCGSEGLENVKNLSDFRNADFAVDYGVSIADGPLQGLTARAVVVLDENDNVLHSELVKEIAEEPNYDAALAVLK
>NZ_CP011117.2|WP_046067950.1|90278_91568_-|glycosyltransferase-family-4-protein
MNQPATKVLVIGYVWPEPRSSAAGGHMMQILESFLTQGWDITFSSPATIGEHKADLPALGIAECAIELNNSSFDDFIRELAPDIVLFDRFMMEEQFGWRVEQCCPNALRVLETSDLQSLRDARHQRFKEQVKANPDSDDFSALFAPALEDEFQRMADTDLAKREIAAIYRCDISLMISDVEIRLLTEQFKVPAALLHWCPLMLQPPTAAFAPFEDRAHFLSIGNFRHAPNWDAVLWMKQSLWPLIRQQLPGAQLHIYGAYTPPRATALHNPAQGFHVMNWAEDALQVMTAARICMAPLRFGAGIKGKLIDAMLCGTPNVTTPIGAEAMGDDQPWPGALEHNAPALAAAAVALYQDREGWTQAQERGRQLLARRYDQAFHGPALVECLERCRRNLAAHRRDNFTGSMLRHHAHKSTQYMSQWIEAKNRNI
>NZ_CP011117.2|WP_046067949.1|89684_90197_+|GNAT-family-N-acetyltransferase
MIRYARLSDAHSIASVHVSSWQQAYLDLMPADFLASLTATLPKREAHWTHAIESKASDVLVSEVDGKVTGWISVGPCRDEDKACAEAGEVMAIYVLAEYWGKGIGAQLWASGLKRLVDQGYKLITLWVLAENQRAVRFYQGLGGREELGSRRTLVRGGVSLEEVRYVWER
>NZ_CP011117.2|WP_046067948.1|88625_89531_-|AraC-family-transcriptional-regulator
MTRATRITDPSYELMDDHNGLSIIYRQHGFPCPLVRWHFHKEYELHLIVASSGKVFIGDYIGNFYPESLFLTGPNLPHNWISQVEEGEVVPKRDMLVNFTDELFEQGSHTFAELKSLAPLLERAQYGIEFRSKKTIAQAMALMQRIEEAQGMARLGHFFILLEVLSACDDYQLLSGVTTPQQADEHSIDRTNRAVDYIFAHYARDLPLEEVAEYLGMKPTYFSRVFKQATGRTFIEFVNRLRISKSCELLADGDKAVTDVCFESGFNNISNFNRRFQQLKGMTPSHYRRLAVQRLTEQNLA
>NZ_CP011117.2|WP_046067947.1|88209_88578_+|hypothetical-protein
MNYSYLSGFIYCFGDGVGEFLGDEEKSHHCVLGLREVVCGYIDERGLLSAVILGVQIRSCIKRNMSLDGLAYVDPPFNQDTSFPEEYFEGDLYDFLTSVLGLLDAEIKARGQKVFHRLIGRR
>NZ_CP011117.2|WP_046067946.1|87779_88148_+|hypothetical-protein
MHLHSFMYEVGEGVGEFLSDDEKKHFQPLTLPEIVKDSFGEGGVLSLVHAVILKKQIAHYIKNHMGAEGLEYVDPPFDQETSFAEDYFEGDLYTFLTSVMELFDSEMKARRRKFFSGLIGKR
>NZ_CP011117.2|WP_046067954.1|102200_104297_+|bifunctional-diguanylate-cyclase/phosphodiesterase
MLIGSYSTSLVVISLCVAVLASYTALDLAGRIATAKGRAVYLWISGGALAMGVGVWSMHFIGMLALRLPFALGFDLGITALSLLIAMLSSGFALWLVSQPRLPAWQLAFGALIMGAGIASMHYTGMAAMRMTPGIDYDPTLFGASLLIAVVASGAALWIAFNLRRNTPYVRLARGGAAVVMGVAIVGMHYTGMAAARFADDSFCGAALTGLSGRGLDNLVLVTSLAVLVIALLTSLLDARLEARTAVLADSLTLANRELTHLALHDMLTGLPNRTLLADRIQQGIQAVNERGGCFALMFIDLDGFKPVNDAFGHHMGDQLLREVGLRLREDLRSQDTLARIGGDEFVLLVQLTQPDDAMGLAERQVGLINRTFKVAEHELNISASIGIALFPGNGSSPQELLMNADAAMYHAKGMGKNGYSFFDVSMNTNARKQLQLLQDLRNALEHGQFRLYYQPKFDAVSGIAVGAEALLRWEHPQQGLLLPATFIALAEKTGLIIPIGEWVLNEACRQMSLWYAQGYESWRIAVNLSALQFCHAGLVNSVAAALERHQLPANSLTLEITETTAMSDADASMTVLQQLSDMGVDLSIDDFGTGYSSLMYLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEGVETNVQQDFLTRLGCDSLQGYLLGHPLPADSFMADIRSAEQTVAPDKSYE
>NZ_CP011117.2|WP_046067955.1|104351_105098_+|SDR-family-oxidoreductase
MDKVVIITGGSRGIGAETALLAAREGYRICINYQSDEKAAHAMLEQVRGLGAQAIAVRADVSSEDEVIALFNRVDAELGRVTALVNNAGTVGHKSRVDEMSEFRLLKIMKTNVLGPILCAKHAVLRMSPRHGGQGGSIVNVSSVAARLGSPGEYVDYAASKGALDTFTLGLSKEVAGEGIRVNAVRPGYIFTDFHALSGDPDRVSKLESGIPMARGGRPDEVAEAIIWLLSDKASYATGTFLDLGGGR
>NZ_CP011117.2|WP_046067956.1|105107_105563_-|hypothetical-protein
MRINMLPASTAYQLGEGRPENNWLAVPAAPEEPPFADRRSARQIINANPGLKHLLRRRDSYPVTDLLKRQLGDWTSANPDAKARARAAYNLARVINVLDNVNDRRVGNSERHDGKINGFYNAGYSTRKNSEARLLVAFAQDGYDVLQSLGR
>NZ_CP011117.2|WP_046067957.1|105640_107050_-|PLP-dependent-aminotransferase-family-protein
MKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPSTVFQAYYLLERRGLIRARPRSGYFVNTHAPSPFSEPVVSEQVHESTNVDVSELVFSVLDSIKDPNTVPFGSAFPSPMLFPLPRLARSLASASREMDPRLVVTDMSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEAPAFYACLQVLERLKLKAVEIPVHPRDGIDLDALAQCLERYPIKACWTMTSFQNPMGATLPEAKKQALVELLRSHQVPLIEDDVYAELYYGQQAPKPAKAFDTEGLVMHCGSFAKSLAPGYRVGWVAAGRFAQKVERLKLMTSLCPSMPAQAAIADYLQHGGYDRHLRKLRYALEEQQSAMLAAIARYFPTQTRVSQPAGGYFLWLELPEQTDSLKLFQMALAQGISIAPGPIFSATRRFSNCIRLNYGSPWTEASEKAMETLGRIVRSF
>NZ_CP011117.2|WP_046067958.1|107208_108618_-|cytochrome-c-oxidase-accessory-protein-CcoG
MSERIPTVETFEPNHPKKVKAKSSDNLIHTRSFTGVFRTLRVGGAGLLFLAFFGTVWLNWGGRQAVLWDLAESKFHIFGATFWPQDFILLSALLIICAFGLFAITVFAGRVWCGYTCPQSSFTWLFMWCEKVTEGERNQRIKLQAAPWSLNKLARRSAKHTLWLGISVLTGLTFVGYFTPIRPLATELLTWQMGGVSLFWVLFFTGATYINAGWLREAVCMHMCPYARFQSVMFDKDTLTISYDAARGERRGPRKREVQPADVGLGDCIDCQLCVQVCPTGIDIRDGLQMECIGCAACIDACDSIMDKMGYARGLVSYTSEHQLQGGKTHLLRPRLIGYSAVLLVMIAALVVALVERPMVSLDVTKDRGMFRENSQGLIENIYSLKVINKTQQRQDYRLELVDADSFQLQGKTQVSLAPGEIVDVPVSVALLADKPVSSSQTIRFKVTDVDEPWIYSAADSRFVAPLNR
>NZ_CP011117.2|WP_046067959.1|108803_109043_-|DUF3203-family-protein
MSVRIENHLCYFTLDETGQEQSLPATRVNILTDNEKAMSYVELAGQQIYITEAEADALTVEGARDGRNHVKADKPGSVI
>NZ_CP011117.2|WP_046067960.1|109162_109660_+|MgtC/SapB-family-protein
MDAWWHQVWQTLQAEFADIGDARQLTQITVRLLIAALLGGILGFEREQKGKAAGVRTHMLVALGAALFVLVPQVSGSQADAMSRVVQGVIAGIGFLGAGTILKGKEDEEGQHVKGLTTAAGLWMTAAIGVAAGMGRESTAVLSTLLALMVFSVMPRVVKLLDKNE
>NZ_CP011117.2|WP_080944605.1|109665_110814_-|hypothetical-protein
MSISLLPPTSTIQGIQQPSANDYRQKLNDLLRAGPSGIMRRKEPDRHPSDLPRAPQAFTPPNPSPSTSLKPQAPGTDAPEEQASTAPSTAPNTDVEPQAPGADAPRLAQLRALASRESITQMLREPNSQETAQKLAEIRSLLSKENVKSMLQGPNADEARKLITEVKERLGQSSLQKIHDQSSHIERPGLSPQEIRDRTASSDPEESFSQSMQVFDELRVEESYAKQRVRQSTPLASALFEIGKEVDLGEPTPQPDNSSAEADSLKPDNNNNNNNNNNSNDSRIDIGQTFTFHSTRDSNFDAPKEVMDFDHNRDKLDVTAIRNQLGNKPLKLVENFSGASGEVQVHYNPANNTSVVMISGNPGEPPFVVKVFGEVRYSNLST
>NZ_CP011117.2|WP_046067961.1|111362_113351_+|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MTAETLAPEDSVLPLSQALLLPRIAIESTMPVIDNGEFAVKAVVGQRINVTSKVFADGHDKLAVLIRWRAREDESWHSVVMNDVGNNGWEGAFSVAQQGPHQYCIEAWIDTFASFCYELRKKHEAGVPVSLELQEGRSLVLQAAERSDNELRDRLMLLHHELSGLLETEQVALFLHENSAHLMTQADHRAYLSVSPVYPIDVEREAAQFASWYELFPRSITDDPARHGTFNDVHSRLSMIHDMGFDVLYFPPIHPIGRSHRKGKNNSLTAGPDDPGSPYAIGSEEGGHEAIHPQLGSRDDFRRLVKAAADHGLEIALDFAIQCSQDHPWLKQHPGWFNWRPDGTIKYAENPPKKYQDIVNVDFYAADAIPGLWTELRDIVVGWVEEGVKTFRVDNPHTKPLPFWQWLISDVRAKYPEVIFLAEAFTTPAMMARLGKVGYSQSYTYFTWRNTKAELSEYLTQLNQSPWRECYRPNFFVNTPDINPGFLHQSGRPGFLIRAALATMGSGLWGMYSGFELCEAAPVPGKEEYLDSEKYEIRPRDFTAPGNIIAEIAQLNRIRRQNPALQTHLGLKLYNAWNDNILYFGKRSEDGSNFILVAVNLDPFNAQEAHFELPLWEMGLPDDAQTQGEDLMNGHRWTWYGKTQWTRLEPQMPFGIWRITVS
>NZ_CP011117.2|WP_046067962.1|113435_116783_+|maltose-alpha-D-glucosyltransferase
MAKKPKAATFIKDPLWYKDAVIYQVHVKSYFDSNNDGIGDFPGLIAKLDYIADLGVNTIWLLPFYPSPRRDDGYDIAEYRGVHSDYGTMADAKRFIAEAHKRGLRVITELVINHTSDQHPWFQRARKAKPGSAARDFYVWSDDDQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQPDLNFDNPQVMKAVLSVMRYWLDLGIDGLRLDAIPYLIERDGTNNENLAETHDVLKQIRAEIDAHYPDRMLLAEANQWPEDTQLYFGDRKGDDGDECHMAFHFPLMPRMYMALAQEDRFPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDRERDYLWNYYAADRRARINLGIRRRLAPLMERDRRRVELLNSLLLSMPGTPTLYYGDEIGMGDNIYLGDRDGVRTPMQWSIDRNGGFSRADPASLVLPPIMDAQYGYQSVNVETQAQDPHSLLNWTRRMLAVRKQSKAFGRGSLKMLSPTNRRILAYTREYTGEDGRSEIILCVANVSRSAQAAELDLSAFAGMVPVEMLGGNAFPPIGQLNFLLTLAPYGFYWFVLAAENQMPSWHVEPAQSMPDFTTLVLKKRMEELLEEPCRTSLEQTSLPAWLPKRRWFAGKDTAIDSVHIAYGVRFGDPQHPVLLSEIEVTSGGQVSRYQLPLGFLGEDQFTSALPQQLALARVRRTRQVGLVTDAFSLEQFIREVIQAMQAGTVLSSVEGDLRFESTQHLAGLQLGSESPVRYLSAEQSNSSVVVGESLVLKLIRKVSAGVHPELEMSAYLTAAGYPNISPLLGSMSRRDGQGQDNLLMIAQGYLSNQGDAWSWTQNNLERAIRDELAEAISEQEQHYNALGELADFAGLLGQRLGEMHLVLGAPTADKAFKPELTTAKDTQAWAKDVGAQIDRALQLLKLHQSQLNPADQALVSELLAQKKAIAGHVQALAKATLGGLRLRVHGDLHLGQVLVVKGDAYLIDFEGEPARPLHERRGKHSPYKDVSGVLRSFDYAAAMALNVQGVDHSPEADNARKRVTDRYLNEARQAFTQAYQAATATLAHDWQDAKGQDAALTLFSLEKAAYEVAYEAENRPTWLPVPLQGLHGLLSGLTPKSKPVRGGETS

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Crispr_ID: NZ_CP011117_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011117_2

3356953-3357087

Orphan

Consensus_repeat	Method
CCTACGAAATAAAGTCTGTCGGA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP011117_2

>merge|NZ_CP011117|2|3356953-3357087|PILER-CR
CCTACGGAATAAAGTCTGTCGGATCGAGCCCAGCAATTACTGGGATTAGCCGACGGGCTAATCAGAAATAAAGTCTGTCGCATCCCGCATTTTTTAAGGCCTTACCGTGTGACCTACTAAATAAAGTCTGTCGGA

>NZ_CP011117|2|1|3356953-3357087|PILER-CR
CCTACGGAATAAAGTCTGTCGGA	TCGAGCCCAGCAATTACTGGGATTAGCCGACGGGCTAATCA
GAAATAAAGTCTGTCGCATCCCG	CATTTTTTAAGGCCTTACCGTGTGACCTAC
TAAATAAAGTCTGTCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011117.2\|WP_046070199.1\|3363560_3364835_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368573
NZ_CP011117.2\|WP_046070197.1\|3362169_3362853_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP011117.2\|WP_046070193.1\|3359164_3359959_-\|Sir2-family-NAD-dependent-protein-deacetylase	unknown	unknown	gnl\|CDD\|238697
NZ_CP011117.2\|WP_080944697.1\|3366336_3368067_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NZ_CP011117.2\|WP_046070186.1\|3350675_3351299_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP011117.2\|WP_043048213.1\|3355423_3356356_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NZ_CP011117.2\|WP_046070195.1\|3360512_3361562_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
NZ_CP011117.2\|WP_046070183.1\|3346403_3347438_-\|protease-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NZ_CP011117.2\|WP_046070196.1\|3361824_3362160_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011117.2\|WP_046070200.1\|3364913_3366344_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350690
NZ_CP011117.2\|WP_046070191.1\|3356517_3356883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011117.2\|WP_046070185.1\|3348439_3350365_-\|protease-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NZ_CP011117.2\|WP_046070198.1\|3362964_3363474_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011117.2\|WP_046070194.1\|3359955_3360516_-\|non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|238285
NZ_CP011117.2\|WP_046070187.1\|3351309_3353058_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|371922
NZ_CP011117.2\|WP_046070189.1\|3354348_3354792_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011117.2\|WP_046070188.1\|3353060_3354359_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350376
NZ_CP011117.2\|WP_046070184.1\|3347434_3348427_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NZ_CP011117.2\|WP_046070190.1\|3354801_3355422_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP011117.2\|WP_046070192.1\|3357997_3358624_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011117.2\|WP_046070199.1\|3363560_3364835_-\|hypothetical-protein	gnl\|CDD\|368573	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family. Amidase_YiiX is a family of permuted papain-like amidases. It has amidase specificity for the amide bond between a lipid and an amino acid (or peptide). From the structure, a tetramer, each monomer is made up of a layered alpha-beta fold with a central, 6-stranded, antiparallel beta-sheet that is protected by helices on either side. The catalytic Cys154 in UniProtKB:Q74NK7, Structure 3kw0, is located on the N-terminus of helix alphaF. The two additional helices located above Cys154 contribute to the formation of the active site, where the lysine ligand is bound.	1.29393e-11
NZ_CP011117.2\|WP_046070188.1\|3353060_3354359_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	6.42634e-48
NZ_CP011117.2\|WP_080944697.1\|3366336_3368067_-\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	3.5722e-13
NZ_CP011117.2\|WP_046070186.1\|3350675_3351299_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.04131e-21
NZ_CP011117.2\|WP_043048213.1\|3355423_3356356_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	4.05007e-144
NZ_CP011117.2\|WP_046070194.1\|3359955_3360516_-\|non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|238285	cd00515, HAM1, NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.	5.54915e-44
NZ_CP011117.2\|WP_046070200.1\|3364913_3366344_-\|AAA-family-ATPase	gnl\|CDD\|350690	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	9.15703e-09
NZ_CP011117.2\|WP_046070183.1\|3346403_3347438_-\|protease-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	9.10056e-56
NZ_CP011117.2\|WP_046070185.1\|3348439_3350365_-\|protease-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	4.47545e-60
NZ_CP011117.2\|WP_046070187.1\|3351309_3353058_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	0
NZ_CP011117.2\|WP_046070197.1\|3362169_3362853_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.19798e-06
NZ_CP011117.2\|WP_046070195.1\|3360512_3361562_-\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	1.05148e-53
NZ_CP011117.2\|WP_046070184.1\|3347434_3348427_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	5.29894e-67
NZ_CP011117.2\|WP_046070190.1\|3354801_3355422_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.24599e-33
NZ_CP011117.2\|WP_046070193.1\|3359164_3359959_-\|Sir2-family-NAD-dependent-protein-deacetylase	gnl\|CDD\|238697	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.	6.14655e-46

>NZ_CP011117.2|WP_046070191.1|3356517_3356883_-|hypothetical-protein
MQSSSATVHARLHNRRFAVANNTQGLSGTGTVFHYQVEDGVISSTYQGGRIRLGTQVGRVTGPDTIELLYQCVTLEGELLAGWSRGTVGVDRDGRTTLSFDWGWLSGATGGGESRYVEITA
>NZ_CP011117.2|WP_043048213.1|3355423_3356356_+|phosphatidate-cytidylyltransferase
MDSQTLMLFGGIGAILVIASLIGLILKLRTRGSPNAVIDNLNARINAWWVMVVVIGIAFWLGTGAVILLFYAVSFYALREFLTLTPTRRSDYPALVAAFYLALPLQYVLIYADWYGLFSIFIPVYVFLLLPILASLGGDSTHFLERASKVQWGLMIAVFCVSFVPALLTLDIPGYEGRNLLLIAYLVIVVQLSDVLQYVCGKLFGKHKIAPNLSPSKTVEGFVGGILLSSLIGAALWWTTPFNPWQSFLIALLINLLGFAGGIVMSAIKRDRGVKDWGHMIEGHGGMLDRLDSVCFAAPIFFHLVRYWWT
>NZ_CP011117.2|WP_046070190.1|3354801_3355422_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MFEPVVATLITSMARTVTGARSLWLGCAPVPVQRIYFANHSSHGDFVLVWASLPQNLRKFTRPVAGSDYWNKSALRRYIINRVFNGVLIDRERREPVDNPLQPMLAALEGGDSLIIFPEGTRNLEDGLLPFKSGLYHLAKSYPQAELVPVWIANLNRVMPKGRVLPLPLLCTTSFGAPLQLEEGEDKAAFLARTRDALLALAPEHS
>NZ_CP011117.2|WP_046070189.1|3354348_3354792_+|hypothetical-protein
MPADMELQVVASLLRSGRSLDQLSTGLTLLGVLFGLAQLLLASISTICLLLALWMIVLGLLQKYWALRVALDADLFALLARDTARTPDLDQALQTLGLQSPKRAGRPWSERRRGALKLLRKQAWLLGAQALLTLGVILASPWLPFAG
>NZ_CP011117.2|WP_046070188.1|3353060_3354359_+|phosphatase-PAP2/dual-specificity-phosphatase-family-protein
MREPGLLKPAVLWLLLLAPLFFSTYGFATWVTSQRSDVGMLVFGWETHIPFWAWTIVPYWSIDLLYGFSLLLPNTRHELKQHALRLLSAQVIAVSCFLIWPLRFTFERPELDGVFGWLFAVLAGFDKPFNQAPSLHIALLVILWVMYQRHTQGFWRWVVHGWFTLIGLSVLTTYQHHFIDLPTGALAGWLCVWLWPVEHPSPLVNARLTRDPQRWRMGVRYGLGALILAVLAFVLGDGWLWLLWPAVSLALIKANYLVLGASGFQKREDGRLTPAARWLYAPYLAGAWINSRLWTRKHPQPDLIVDNVWLGRIPTSRQQGSFKAIVDLCAELPINPQGGAYACVPVLDLIAPTPDECIKAAHAIEQLRQHGPLLVCCALGYSRSATAVAAWLLNTGRAATLDQALAIIRTARANVVLHPAHREALEGLPHAR
>NZ_CP011117.2|WP_046070187.1|3351309_3353058_+|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase
MREQQQHTCSTHDGVELFYRHWPATAGSGPRKAILLFHRGHEHSGRIAHLVDELGLPEFDFFAWDARGHGQSPGERGDSPSFATSARDVQTFCDHIGATYGIEEQNLAVIAQSVGAVIVATWVHDYAPKIRALVLASPAFKVKLYVPFARPGLALMRRFRGNFFVNSYVKAKFLSHDPERVASYDSDPLITKAISVNVLLGLYEAADRVVADAQAIQVPTQLLVSGSDFVVHRKPQQQFFDRLGSLKKELHILPGFFHDTLGERDRAVAVNSVKRFILQNFAHPLDRACLLDADKLGATCAESESLAAPLPRNSLRDLYWRMTRASMGLGKNLSDGVKLGFDTGFDSGSTLDYVYRNKPTGKGGLGRMIDTNYLNSIGWRGIRQRKLNVEELLRLAMAKLREDDRQVRIVDIAAGHGRYILEALQGVSPLPESILLRDYSDINVRDGGALILEKGLGDIAQFVKADAFDRADLAALEPKPTLAVVSGLYELFADNAMVGGSLAGLAEALEPGGYLVYTGQPWHPQLELIARALTSHRQGQAWVMRRRSQAEMDQLVEAAGFRKITQRVDEWGIFTVSLAQKI
>NZ_CP011117.2|WP_046070186.1|3350675_3351299_+|CDP-alcohol-phosphatidyltransferase-family-protein
MISIYQLKPRFQNLLRPLVQRLYDNGTTANQITVLAGVISLLVGLLIAAFAQQLWLFALIPLWMIVRMALNAIDGMLAREFGQQSRLGAYLNELCDVIADSALILPFALIPGVSLAPVLLVTLLAIFSEYAGVLGPMVGASRRYDGPMGKSDRAFVLGVLATGVALGWLGAGWVESVMWLVAALLAYTLVNRVRQGLKEQQHTPPSA
>NZ_CP011117.2|WP_046070185.1|3348439_3350365_-|protease-modulator-HflK
MQVDLEADGASVEGLARFQQGLFHARRLRQAGISLTTLAISAWVLALFVALFAPLSIWPVVLINCASALLVLVAGLQSAWWVADWRAQALEAPSVELVEEPREPTTWHKGLINRFGNGLLAQVGAPVLWLGGWSLLALISVTQFWNLALPAAAVGQSASIGAALALALAFGLLVFERRLAQETAAQWPEASQLAQLSRVAIICLVISAICLLFANAESVWPLRLATLIGLLPALVALEFLLRGVLSLFSPRQPRLEPRLMAQSFTAGLLRWPPQPLLALQHELHNRFGIDLRQIWAFTYMRRAFLPVLLVVLAVGWALTGVHEVPLQGRGIYERFGKPVEVFGPGLHAVLPWPLGRVLNIENGVVHELATSVSEAATAPLAAAEGPAPLIANRLWDASHVNDKSQVIASSSGDKQGFQIVNMDVRFVYRIGLTDQAALAATYNSADIPTLIRSTASRILVHDFASRTLDELLGEQRTSLADEIGRSVQADLQTLDSGVEILATVVEAIHPPAGAANAYHGVQAAQIGAQALIARERGAASEQTNQALLQASTARDQAQANAREVNAGAQAANLRFAAEQKAYAAAGQAFVLEQYLGQLSQGLAHAKLLILDHRLGAGSAPTIDLRSFTLPADPSVPRKAVQ
>NZ_CP011117.2|WP_046070184.1|3347434_3348427_-|protease-modulator-HflC
MSAHSHDHGHHHHHGHHHHHHGDEQASGPFPWRRMAWAVLLVLFAVAAASLVQVRSGEATVITRFGNPARVLLEPGLGWRWPAPFEAAIPVDLRLRTTSSGLQDVGTRDGLRIIVQAYVAWQVQGDADNVQRFMRAVQNQPDEAARQIRTFVGSALETTAASFDLSSLINTDASQVRIADFEAQLRQQIDQQLLTTYGVRVAQVGIERLTLPSVTLTATVDRMRAERETIATERTAVGKREAAQIRSAAERDARIVQADATVKAADIEAQSRVEAAQIYGRAYAGNPQLYNLLRSLDTLGTVVTPGTKIILRTDAAPFRALVDGPKDIQP
>NZ_CP011117.2|WP_046070183.1|3346403_3347438_-|protease-modulator-HflK
MSERDSPDSPWIQAGRLTFLALYAVTVLAALAWAFYNVRQIDPQNRAVVLHFGALDRIQNAGLLLAWPQPFEQVVLLPAAGRVIERRVENLLRSDAALQADRVASFATPLSDALAGSGYLLTGDAGVVQLDVRVFYKVTEPYAFVLQGEHVLPALDRLVTRSAVALTAARDLDTILVARPELIGSDNGAAERRERLRGDLVQGINKRLAQLAANGLGLGVEVTRVDVQSSLPGPAVNAFNAVLTASQQADKAVANARTEAEKLTQSANQEADRQVQVAHAQASERLAKAQAQTATVASLAQVKDPGLLLRLYRERMPKILGQAGSVTTVDPKDDSRLIIQGAEQ
>NZ_CP011117.2|WP_046070192.1|3357997_3358624_-|hypothetical-protein
MDIWAANKLFYFIAFVVPGFISLKMYALLQPTQVKDSAQQLIDAVAYSSINYALLLGPIYAVENFNLRASYPTLYVLFYILVVLVAPIAWAWAFLWLRKTQLLQRSLAHPTGKPWDFVFSQRGRYWVIVTLVDGRQIAGRFDTKSFASSSPAPEQIYLEEAWVLSEGGGFERKRNDSAGIIILAKEIATLELFNLKDAEENENVEQEK
>NZ_CP011117.2|WP_046070193.1|3359164_3359959_-|Sir2-family-NAD-dependent-protein-deacetylase
MNAELLRAHRTGKLMLFVGAGVSANLSLPTWGELIARIAQDLGYDPKIFSTYGTPLALAEYYKRKKGTLGPLRSWMDREWHKHSTDISTSEIHRLITLGRFSRIYTTNYDRWLEMAHDKFEVPYDKIASVADLVSAAEGRRQIVKFHGDFDDESSIVLDETSYFQRLNYDSPLDIKLSNDVLGNSVLFIGYSISDINIRLLFYRLTEMWGRSALPSARLKSYVFTNRPNPVAQEVLGQWGIEMIVSEEDDPKKALTNFLQELVS
>NZ_CP011117.2|WP_046070194.1|3359955_3360516_-|non-canonical-purine-NTP-pyrophosphatase
MKIRFMSGNQHKVNEVQRILSPIGVEVVSVSRKIEELQTEDVHRLVRDKLTKAFEAIGRPLFVEHTGLYLSGLNGLPAGLTQIFWDKLEAERFVKLVAGLEDAAVTAKTVLGYCDGRQIHLFEGSIEGTVPLVPAGPTDFQWDCVFVPNGHTQTFAEMGPAKDAISMRRKALDQFAEYLKTCEGVK
>NZ_CP011117.2|WP_046070195.1|3360512_3361562_-|adenosine-deaminase
MNQCQMDLATTPNGVNGHEIAHESLVLEPSECDRAELHVHMNGAIPISTIQDIFTDELTELPSGFLIERDMLRHTPCQSLASYLTPWQVLRLFPKRRENLDRLSLAVVANLAQNNVRFVELRSSVLYLAALQNCSPAQALERLLESYRAASDRFGMRLGLVLTVTRGDYSLVGLATLLQAYQDLGEPDDVVGLDLAGDEEIAYPAELPSLFRKAKDRFGLGITIHAGETGRVENVRSAVELFGADRIGHGTAASKDPHLLDLLARQDICIEVCPISNRLTGAVPVDEAHPLLEFRRHQVPFVICSDNPAIHQRGLADDHATAMTEGLSASDISEQFDVAKRYSFIEGLN
>NZ_CP011117.2|WP_046070196.1|3361824_3362160_+|hypothetical-protein
MSRFAFGSIFTALDDDEIEDQKGYGFFDWQAHGVVGYDEELATYFANLDGSWGIGTAYQELPTIADLQRRLVEAFQGVELPFNRVGLERLAQGVEDSPTILTPSQAASKRS
>NZ_CP011117.2|WP_046070197.1|3362169_3362853_+|GNAT-family-N-acetyltransferase
MSIVLYHQACPDKSAVDQVLKLAASFCTDLRLDAIPASNAFYSLYQWALVREVELYIERIGYANAPVELLLAFDELTRDEVVGFLLYLPVMRQTDACGVCYMAVKSTHQGRRIGKNLLVAMLDRYPHAELTCSVSNVEFYESMGFSVVGTHSSQVAMSTRTQEATEGEILLIDSRSILGSPEARKRQMELEQRWGKKEMRYAIQQFERHVSKRVLQADNFVKERLGR
>NZ_CP011117.2|WP_046070198.1|3362964_3363474_-|hypothetical-protein
MEIFSVIAGTFGRIFGKIATPYIKSIWYRIRGEKFCKRGKPKYEDVISSIADYKKLSNFIARNDEGIVFLDLTMDENSFRGDTESTAPYFVAFEDCFEELEVGESPSIFKCTGTQFNVHISHVEGSCFFYSQRGFIRLRGYFVITGYSGPYQGLMDCNLRGVRHEDIKV
>NZ_CP011117.2|WP_046070199.1|3363560_3364835_-|hypothetical-protein
MEGEMNELELRPRVFVSDLIQLGDIVLTTTPDPMSKTIRKAIGADISHAMICVGKSSVIDSTGDGVHARNLERLILEPGCAGHVLRPVAPLTTDQLHSIIAFARAAVGTRYTKIGAAKSVLAGFVAGRRQFCSRLVAQAYHRAGANLVPDADFCHPGELLNSAALFEVPNVLRDLNAEEEAGWRENVDHVQVMRDSTNVLLREARMLSSEIESLNDIDAYLVDHQEADDHLVKALRASRYLELWKDEFERNAWQYHVAFMEGYKSSAEHKQRYCEELLASEKLGQNRFVLNHAGYVTVNALHPRQYFALKIKLYELLTQLHDRRIRAATTWLERKGLLKPEPRPLLRPHTPEWFASLREWDPKQAAMTEAAIRVAGSLDVCTVCADEPVCDYVLLSVPPAGPGTCRLCDDCFHIRSIDEPMRTF
>NZ_CP011117.2|WP_046070200.1|3364913_3366344_-|AAA-family-ATPase
MSEDLAIKLNDCTSKGYVIAPAGFGKTHLIAMAVRASSGRQLILTHTFAGVNSIKMKMANLGVRGSQYQVDTIASWALRLCLAYPKASGWKIENPTSKQWSKLYECCTRLLGKRFIREAVSSSYIGLYVDEYQDCSDLQHDLVCSLAEFLPSRILGDPLQAIFDFDDGKPVDWEASIYPEFDCLGRLEVPWRWINAKSPALGEWLKESRRKIELGQKIDLLAKLPPSVISVHTQPEYLAAKQYSALCGLLNHNESVIALHGGDQQSKNKTHLLAKSMAGRFSSIEEIEGKDLHLFLKKLAAAKTAQAGFLLALKFATKCFTGVTRTLTAGTKRGEVTNLRKTTKYPLVLQAANDYLSDQSSSYLKAFFQTLKSNPETSAYRRDLLYRFLSVLKIHVDGQATTLVEAGILYQREMRHSGRPISHRKLIGTTLLVKGLEYDHAVILDADSLDAKDLYVAMTRGAKSLTIIGTARHLPA
>NZ_CP011117.2|WP_080944697.1|3366336_3368067_-|AAA-family-ATPase
MTFRGYRSVKIRKIVIKNFRGVKALDWNVPTADILCLIGKGDSSKSTILEAIRYTFHPQWNLALSDSDFYQCKIADPIVIEITIGHLAADFCALNKYGLHLRGWDAAAQKLHDEPDDHFESVVTARLTVEKDLEPKWTVVCDRNPDGVQFKQADRNKVGVGLIGVFSERELSWANGTALAKLTVAQSLSELLANASRTARGSLDVDRAVTLTNFDNAATKSQEIAKLLGVPVLDAYKAHLDLASINLKVGGLSLHDGEIPLRQLGLGSRRMLQCGIQKAGLEEGHITLFDELEFGLEPHRITRLIKHIREDKRGQYFLTTHSPMVLRELTVQDLHIVHSKGGVVTIVSAAEKGLEEHEVQGKIRSSAEAFLAKKVVVCEGATEVGFIRGFDDHQLENGQDPLSYHGVALLDAKGASKVKGMAIAFKKLGYDVSVLADGDAEKQFSAADAAGLVALGIPSYVWSDKLSLEERAFADLPWASVLASLTLAGVELFYSVYDQVRSQYQDVLDPDISEWRDSPKLRTAIGAAAKSAGWFKDTTRGDQWFKSVSAAFNDPVFGKTNLAVELGRLWEWAKRV

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Crispr_ID: NZ_CP011117_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011117_3

6231573-6231667

Orphan

Consensus_repeat	Method
CGATGGCGGCCTGACAGCCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011117_3

>merge|NZ_CP011117|3|6231573-6231667|CRISPRCasFinder
CGATGGCGGCCTGACAGCCGACCGCTAACCAACGTATGCCCCGCGATCCAAATGTGGGAGGGGGCTTGCCACCGATGGCGGCCTGACAGCCGACC

>NZ_CP011117|3|2|6231573-6231667|CRISPRCasFinder
CGATGGCGGCCTGACAGCCGACC	GCTAACCAACGTATGCCCCGCGATCCAAATGTGGGAGGGGGCTTGCCAC
CGATGGCGGCCTGACAGCCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011117.2\|WP_046072724.1\|6223438_6224425_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NZ_CP011117.2\|WP_046072171.1\|6228371_6229391_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|275173
NZ_CP011117.2\|WP_046072170.1\|6227595_6228375_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|226149
NZ_CP011117.2\|WP_046072174.1\|6233350_6234442_+\|fatty-acid-desaturase-family-protein	unknown	unknown	gnl\|CDD\|239588
NZ_CP011117.2\|WP_046072177.1\|6235996_6236815_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|366542
NZ_CP011117.2\|WP_046072181.1\|6239672_6240611_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP011117.2\|WP_046072180.1\|6238855_6239494_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|227915
NZ_CP011117.2\|WP_046072169.1\|6226649_6227576_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380524
NZ_CP011117.2\|WP_046072165.1\|6221836_6222604_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP011117.2\|WP_046072179.1\|6237934_6238807_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|376891
NZ_CP011117.2\|WP_046072173.1\|6232137_6233187_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NZ_CP011117.2\|WP_046072164.1\|6220548_6221697_-\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_CP011117.2\|WP_046072178.1\|6236865_6237819_+\|Dyp-type-peroxidase	unknown	unknown	gnl\|CDD\|367887
NZ_CP011117.2\|WP_046072172.1\|6229575_6231537_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP011117.2\|WP_046072166.1\|6222756_6223353_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198314
NZ_CP011117.2\|WP_046072167.1\|6224490_6225717_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|182309
NZ_CP011117.2\|WP_046072168.1\|6225759_6226590_+\|glutathione-dependent-disulfide-bond-oxidoreductase	unknown	unknown	gnl\|CDD\|183298
NZ_CP011117.2\|WP_046072175.1\|6234472_6234799_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|131430
NZ_CP011117.2\|WP_046072182.1\|6240784_6241414_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP011117.2\|WP_046072176.1\|6234795_6235995_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080

Protein	Function_ID	Function_description	E-value
NZ_CP011117.2\|WP_046072724.1\|6223438_6224425_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	1.00957e-25
NZ_CP011117.2\|WP_046072171.1\|6228371_6229391_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	8.71333e-117
NZ_CP011117.2\|WP_046072170.1\|6227595_6228375_-\|TIM-barrel-protein	gnl\|CDD\|226149	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism].	5.68199e-85
NZ_CP011117.2\|WP_046072174.1\|6233350_6234442_+\|fatty-acid-desaturase-family-protein	gnl\|CDD\|239588	cd03511, Rhizopine-oxygenase-like, This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.	5.08779e-140
NZ_CP011117.2\|WP_046072177.1\|6235996_6236815_+\|TIM-barrel-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	2.70128e-05
NZ_CP011117.2\|WP_046072181.1\|6239672_6240611_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	3.46765e-92
NZ_CP011117.2\|WP_046072180.1\|6238855_6239494_+\|acetyltransferase	gnl\|CDD\|227915	COG5628, COG5628, Predicted acetyltransferase [General function prediction only].	5.60605e-15
NZ_CP011117.2\|WP_046072169.1\|6226649_6227576_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380524	cd06301, PBP1_rhizopine_binding-like, periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily.	2.27934e-119
NZ_CP011117.2\|WP_046072165.1\|6221836_6222604_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.00735e-64
NZ_CP011117.2\|WP_046072179.1\|6237934_6238807_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|376891	pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. More recent studies show that BacA has undecaprenyl pyrophosphate phosphatase activity. Undecaprenyl phosphate is a key lipid intermediate involved in the synthesis of various bacterial cell wall polymers. Bacitracin, a mixture of related cyclic polypeptide antibiotics, is used to treat surface tissue infections. Its primary mode of action is the inhibition of bacterial cell wall synthesis through sequestration of the essential carrier lipid undecaprenyl pyrophosphate, C55-PP, resulting in the loss of cell integrity and lysis. The characteristic phosphatase sequence-motif in this family is likely to be the PGxSRSGG, compared with the PSGH of the PAP family of phosphatases.	6.56531e-88
NZ_CP011117.2\|WP_046072173.1\|6232137_6233187_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	3.47073e-82
NZ_CP011117.2\|WP_046072164.1\|6220548_6221697_-\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	1.05566e-180
NZ_CP011117.2\|WP_046072178.1\|6236865_6237819_+\|Dyp-type-peroxidase	gnl\|CDD\|367887	pfam04261, Dyp_perox, Dyp-type peroxidase family. This family of dye-decolourising peroxidases lack a typical heme-binding region.	2.25785e-121
NZ_CP011117.2\|WP_046072172.1\|6229575_6231537_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.38531e-156
NZ_CP011117.2\|WP_046072166.1\|6222756_6223353_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|198314	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs, including Pseudomonas fluorescens GST with a known three-dimensional structure. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Though the three-dimensional structure of Pseudomonas fluorescens GST has been determined, there is no information on its functional characterization.	7.76772e-36
NZ_CP011117.2\|WP_046072167.1\|6224490_6225717_+\|MFS-transporter	gnl\|CDD\|182309	PRK10213, nepI, purine ribonucleoside efflux pump NepI.	1.75598e-90
NZ_CP011117.2\|WP_046072168.1\|6225759_6226590_+\|glutathione-dependent-disulfide-bond-oxidoreductase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	0
NZ_CP011117.2\|WP_046072175.1\|6234472_6234799_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|131430	TIGR02377, putative_Rieske-like_ferredoxin_MocE, Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].	6.28098e-52
NZ_CP011117.2\|WP_046072182.1\|6240784_6241414_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.39266e-13
NZ_CP011117.2\|WP_046072176.1\|6234795_6235995_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	4.01158e-78

>NZ_CP011117.2|WP_046072172.1|6229575_6231537_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MSLTFSVQDLEYLTALGPDALNDGPVAALEQGWRACLSGQVERPAEVRQVIWDSWRRSLEARIDPDHSHYRFVAAQALAATLANHRVLIAAAAQVMHGLLAYNPRGHINLTDAEGTTLYFCGLDITPVGSRLLESVQGTNCTGLALAEDRLMYVLAEENFAGALRQRRMHCAAAPIKDAQGLTLAMLTLTAEPGWFHFHTLGTVQAAAEAVSRQMALQVLLEEQQAVLEVLNEGLVVLDERGCIKALNRYARQLFGVGLELIGSSFQRLGRSELSDVLGEPVRDLDCTFELHDRSQLACLVSVCPLEQGGVIVSVRENRRIREITRRLIGTQARYTFDTIQGTSRAIQDALHLGRIASRGDATTLILGESGTGKELFAQAIHNASERCNGPFVAVNCGAIPRDLVQSELFGHVEGAFTGSARGGSAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGEVTRVGAKNSRPVDVRIIAATHRNLSQAVAEGAFREDLYYRLNVLNLTVPPLRMRREDIPLLARHFLQRCARSLRKPVQGFSPEALALLSAHGWPGNVRELENAIERATNLAMGELIQPADLPLETQQRATLRVYQPQPAQDLSSHELHAIVAALKNTGGNIRLAARQLNVSRGGLYNKMGRFGLDAGDFRGR
>NZ_CP011117.2|WP_046072171.1|6228371_6229391_-|Gfo/Idh/MocA-family-oxidoreductase
MSTQNIRLGLIGAGRMGSFHGLTAARHIPGACLAAIADPTPGQAARLAAELGVDKVYTDPQQLLDDPEIDGVLIAAPARSHAELVISAARAGKGIFCEKPMAITLDEADRAIAAAADARVPLQVGFNRRFAKSFRTAHLDVAAGRIGTPQLLRSLTRDPALNNPAASPQWVIFLETLIHDFDTLRYLNPGAEAVQVYVMADALIAPAYKSQGLLDTAVVTIRFDNGAIATAEANFQAVYGYDVRGEVFGSQGMLSMGSLNDCDLVRYLAEGIQADTQRMDTDLLRDAYIAELNHFVDCLRSGAKPLASGEDARAALAIARACIESYETGKSVAVQGARP
>NZ_CP011117.2|WP_046072170.1|6227595_6228375_-|TIM-barrel-protein
MMPFKLAVSAEMVFLDLPFIERVKRIHALGFSAEIWSWTDKDIDALAATGADFTSMTGYISGTLTDPEGSRQLLDSARESLGIAERLNCPSLNLHGTGLGAGGLPVQPVNQATGRMWLSACKTLEKIARLGEDASRVFLLENLNTAVDHPGTPFARADETLALIEAVGSPHLKMNLDLYHAQIGEGNLIELIQRAGSAIGEIQVADVPGRKEPGTGEIHYPAIARALHVMGYTGVVGLEGWASGTSELALERFRQAFTL
>NZ_CP011117.2|WP_046072169.1|6226649_6227576_-|sugar-ABC-transporter-substrate-binding-protein
MHRYSLLVATLLLLFSQWTFAAYRIGVSIARVDDNFMTYVRSGLEAAAKQQDVQIQFEDAQGDVVRQLNQVEGFLNQKVDAVIVLPVDTAATANITRAAVAAKTPLVYVNRHPDERTLPKGVVTVASNDIEAGQLQMRYLAEKLGGQGNVAIIMGDLAQNATHDRTEGARQVLKDFPGIKIVEQQSAEWQRNKGMDLTSNWLLAGTQFDAIVANNDEMAIGAAMALQQAGKAKGQIAIVGIDGLPDGLAAIKRGLLAASVFQDPKAQATQAVQAAIKMIKGEPIEAEVWVPFELIKPEQVAVFEQRYK
>NZ_CP011117.2|WP_046072168.1|6225759_6226590_+|glutathione-dependent-disulfide-bond-oxidoreductase
MADYLPPKVWTWDTESGGTFASINRPIAGATHDKELPIGKHPLQLYSLATPNGQKVTILLEELLALGHTGAEYDAWLIKIGDGDQFGSGFVAVNPNSKIPALMDRSGATPIRVFESGAILQYLAEKFGAFLPSEPAARAECLSWLFWQMGSAPYLGGGFGHFYAYAPSKMEYPINRFAMEAKRQLDVLDKRLAVSEYIAGDEYTIADIAIWPWYGGLVKGRLYGDSAEFLSVHEYKHVLRWADAIDARPAVQRGRRVNRVSGEEQLPERHDASDLD
>NZ_CP011117.2|WP_046072167.1|6224490_6225717_+|MFS-transporter
MSEYAAQAPAGVVTEPAWLAVFSLAMGVFGLLTAEYLPASLLTPMALDLGVSEALAGQAVTVTAVVALFAGLLVPGLTRSIDRRVVLLGFSTLMIASNLLVALSSSLTVLLLMRILLGIALGGFWSMAAAVAMRLVPAASLPRALSIIFSGIAAGTVVAVPLGSYLGGLYGWRSAFIAAAAVGAVTLAFQAFTLPRLVPNGTARLRTVLEVLLRPGIAMGMFGCVLVHTAHFALFTYIRPFLESTTGVDTQGLALMLLGFGVANFVGTLLAGWLLVRHPRGTLVLMPVLVGIAALALVWLPVSLPGQALLLALWGMAFGGVPVAWSNWVARAVPDQAESAGGMVVASVQSAIAAGAAGGGLMFSVSGIGGVFVGAGVLMLLAALLIALRVQVPRQDRDAGVTHHPSLV
>NZ_CP011117.2|WP_046072724.1|6223438_6224425_-|AraC-family-transcriptional-regulator
MQTLEFLTETPTMTAADAFTLSSDLINELLRGMRLRGVQYRRIQAGPTFGMGFGAKPGHAYFHFLAAGHVTLRGEDGDLFELSAGNAVFIAHGGAHALLSDASIDVQDIGDFDSAPLGDAVCAVDASPETVPSTLLFSACMEFELGSIQGLGNLMPALMLIDAGGQRYPGLMPILAVMEREVSTARIGFAGILARLADVVAAMIVRGWVECACGNASGLVAALRDPRLARALLALHQQPGRDWSVAELAAQCHTSRSVFADRFQAILGIPPLRYATELRMRLASQWLTLERMPIETVAQRLGYTSQAAFSRAFKRITGQPPGAARSSM
>NZ_CP011117.2|WP_046072166.1|6222756_6223353_-|glutathione-S-transferase-family-protein
MKLVGMLDSPYVRRVAISLDLYGVEFVHEPLSVFSTFAEFAQINPVVKAPTLVLEDGTVLMDSSLILDYLETLAPADKKLLPQQPATRAHDLHLLGLALAACEKSVQIVYEHNLRPAEKLHAPWLERVSGQLLAAYALLDKQLGDSEALTQASITAAVAWSFSQFTVASVVKADAFPNLKRHAERLEQHPAFKRYPIA
>NZ_CP011117.2|WP_046072165.1|6221836_6222604_+|SDR-family-oxidoreductase
MTTQQAIYPDLKDKTVLISGGASGIGEFMVRAFAAQGAKVGFVDRAQSQGERLAALLNSQGFTVEFECCDITDEIGYRAAIGRFEQSLGPITVLVNNAANDVRHSLEEIDSQMFDQLIAVNLKHAFFAAKAVVPMMKEAGGGSIINLGSVGWMMASAGYPVYAASKAAAHGMTRGLARELGPSHIRVNTLVPGWVMTEKQLAMWVDDAAKELIARSQCLPGSVMPEHIANMALFLASDASAMCSAQNFIVDGGWV
>NZ_CP011117.2|WP_046072164.1|6220548_6221697_-|galactose-mutarotase
MKHPRYLLSGLALSMLVASGGTQAAGLTSEHKPFGKTNDGTAVEQYILRNSHGMQATVITYGGVLQSLKVPDKHGKVDDVVLGFDDVQGYQAGTAFFGATIGRFGNRLAGGAFELDGKRYQVPLNDGPNSLHGGAQGFDKQVWQAQPVKDKDSVGVTLTYLSKDGEMGFPGNLKTEVTYRLNDNNELHIDYKATTDKPTVLNLTNHSYFNLAGAGNGDILKQVATLHASHYTPVNATLIPTGELAPVKDTPMDFLKPTPIGQHIKADHPQLKFAEPKQGGFDFNWALDTKGDIKQLAADVHDPESGRRLQLYTSEPGVQFYTSNFLDGSVKGKGGKTYQHWSGFTLETQHFPDAPNQPGFASTRLNPGQTYTQHTLFKFSAD
>NZ_CP011117.2|WP_046072173.1|6232137_6233187_-|LacI-family-transcriptional-regulator
MHNHKRPTIATVAAHAGLSVATVDRVLNARAPVNPSTAEQVFQAAEAVGYFAARLIGQRIRERRPTYRFGVLLLGTAQAFYANLAQSISDAAQHHATANLSCQFDYINDRSPNAIVAQIEQLAVQCDALAVVSFAHPLINACLAQIREAGVPVVALLSDIHEQALEPYVGQDNHVVGRTMGWLLAHTCGARKGSVGILLGGHRFLGHQARVKGLHSYLAEHAPGLKPLEPLINLDNCDITEEATLDLLARHTDLRGLCVVGGGGDGVINALAQLPKRPALCCILQESTELSRQALSRGLIDVVMDSQPRQTAAALVQLLVQLLNDEGFDPVRHRVHIPPQIVTPENMGT
>NZ_CP011117.2|WP_046072174.1|6233350_6234442_+|fatty-acid-desaturase-family-protein
MPEHTAYRARRDYSLTGPEAARAAEKGLVSANWYQSPISRKRMKELMQRRDGPALLDTAIWVSTLLVTGFGGYWFWGSWACVPFFLAYGVLYGTASNPRWHETGHGTAFKTRWMNDGLYQVASFMCLFEPHVWRWSHARHHTDTIVVGRDPEIVEPRPPSLWMMALSLFNLPLAWKTFSGVARHAAGRMSAQEQDFIPESEWPKVFRAARIWIGIYALIIGTALYLHSWLPLMLVGLPSLYGAWLGYVFGLSQHVGLAEDVLDHRSNCRTIYMNRVLRFIYMNMNYHLEHHMYPMVPYHALEQLHEEIRSDCPPPYANLFEAYREIIATIRKQRSDPSYFVQRPIRPQAQSAPAALHAEASAG
>NZ_CP011117.2|WP_046072175.1|6234472_6234799_+|Rieske-2Fe-2S-domain-containing-protein
MNDQWIDVCAVGEIDPEDVLRFDHGAHTYAVFRSAEDEFFATAGLCTHEKIHLADGLVMDHVIECPKHNGRFDYRSGKALGAPVCVNLKTYPVRVEAGRVLLAVTAEI
>NZ_CP011117.2|WP_046072176.1|6234795_6235995_+|FAD-dependent-oxidoreductase
MSQALIIVGAGHAGGRAALTLREEGYTGSLILIGDEAHLPYERPPLSKAVLQGSTDLAGCSLCDSTRLAALGIEHIAGNPVSRLDPQQHRLQLADGQWLTYTGLLLATGGRARRLPEAQPPVLYLRTHDEALALRDRLRPGTRVVVVGGGFIGLEVAATARGLGCEVTLLEAGPRLASRVLPAPISAALLALHREQGVDVRLNVALECIHADAVQLVDGQRLPCDLVVAGIGMQPNIELAAAAGLEVGQGIRVDAQLRTSASDIYAAGDVCEFRLAGVYQRQETWRNAEAQGRHAALNLLGGALPFETLPGFWSDQYHWGLQTVGVMTARTVSRALPGAGLLLFYLDDDARLQGACGWAPGNGAARDIKLCERLIAAGTVLNPGSLADADVSLKLLLRG
>NZ_CP011117.2|WP_046072177.1|6235996_6236815_+|TIM-barrel-protein
MRQLLVFQSMWAMQTEPGSLDTQLDRIAAAGFDGITDHYWTPAAVPRLHAAATARGLQIEGQLFPQSVDDLAAALEVISRYGCHHLTLQADVRPRTQAEAARLIEGWQRLAEQVDFPILLETHRYRLTNDLLFTLDLLTQMPDLKLLADLSHYVVGRELPEPGALEDDEQIRTILRHSWGFHGRIASSEQVQVGLDFPQHLPWVERFTSWWRYGIDDWLTRAETPQSLAFTCELGPPPYAITDAKGRELTDRWAEALKMKALIRQVWASCHG
>NZ_CP011117.2|WP_046072178.1|6236865_6237819_+|Dyp-type-peroxidase
MKTCPVQPPLEPQSVCHPITSSAIFMVATLASDAVENVRGWCADIAGLVRSVGKRVPSGNLTCVCGFGSDAWDRLFGAPRPASLHPFREFGVEGRRAVSTPGDILLHIRAEQMDLCFELATQLMAALGDSVKVVDEVQGFRYFDMRSIIGFVDGTENPVGRKAERFTLVGDEDPQFEGGSYVLVQKYLHNMNAWNSLTVEAQEKVIGRTKLADIELDEEAKPSNSHSALTVITDENGEEVKILRDNMPFGRPGAGEFGTYFIGYARSPKPLEQMLENMFVGRPVGNYDRLLDFSTAVTGGLFFVPSADLLEELADRQ
>NZ_CP011117.2|WP_046072179.1|6237934_6238807_-|undecaprenyl-diphosphate-phosphatase
MTNVCTTGLDVGFASLDYLQIFILGVIQGITELLPVSSTAHMRVVPALLGWQDPGSAFSAAMQLAALAAVVSYFWRDVRQVTTGSISAVRRGDYNDPWFKLAVAIVLATLPIGIAGLALSSTLNTCNSPLRGLMVIGIACVVMAILLALAEVRARHTRNVSQMRLRDALIVGVAQIGALIPGVSRSGSTLTAALFLNFKREEAARFSFLLGLPAIALAGLKELWVLLHADMPAHAWPHLIFGLVVASISAFFAIWGLMKFLERFSTWPFVIYRALLGVFLIVAVSTGLLT
>NZ_CP011117.2|WP_046072180.1|6238855_6239494_+|acetyltransferase
MFQEICPGKRYLQSVQPIERIRQSIGVTGTFVNNGALRFFTESPMPETTVELIQTGPEDAELIRNLYQYYAYESSDWEQEDVEADGRFYIHDEHLARYWHDPQWSANLLLVDGYIAGFLLIEGSELPGIDALELADLFILKRYRRKGIGRAIASQVLCSAEANWLVRFYDQDEVSQAFWRTVLDNLPRPVQMIELEDEPQLVSYLITRVLLH
>NZ_CP011117.2|WP_046072181.1|6239672_6240611_-|GlxA-family-transcriptional-regulator
MHSVALMVYPNFQSLSLSLGSVFECANLLRGEPAYEFHLVSESGGAVMTSQGFSVNTTAIRPEGYDTLIVSGYLEFRLPEANLLELVKAASAQSRRVASLCMGIFVLAEAGLLAGKRTTTHWIHAPAFRKRYPDIRLEEDKLFVVDGQVWTGAGMSAGVDLALAMVENDLGSDLARRIARKLVIAQRRGSEQSQLSALLELDPKSDRVQLALAYARENLTHDLSVEALADVARLSPRQFSRVFREETGQTPAKAIEALRVEAARAMMETSRHPVEVVARETGFGDRERMRQAFLRAFGQPPQAMQQVLFNPG
>NZ_CP011117.2|WP_046072182.1|6240784_6241414_+|TetR/AcrR-family-transcriptional-regulator
MNHPSKSARQAILERGQSIVGAKGFSAVGLNEILQAAEVPKGSFYHYFDSKDAFGVVLLDTYFDHYVQGMQALFDQPGLSHHAKLMRYWQCWIDNHTGCTDTGKCLAVKLGAEVSDLSEPMRLALLRGTARTIELLAVALQRGVEDGSLTFEQAPESLAQRLYALWLGTSVMAKITRTTAPFAEALLLTRQLLGGSENLVIHFDRGTGK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4319 : 49786

Leptospira_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108240657.1\|4319_5407_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-43	37.8
WP_046067894.1\|6185_6437_+	antitoxin	NA	NA	NA	NA
WP_080944771.1\|6436_6751_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_148666874.1\|7966_8890_-	hypothetical protein	NA	NA	NA	NA
WP_080944772.1\|9202_9559_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	6.3e-16	41.2
WP_046067897.1\|9576_11088_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.4e-82	36.4
WP_046067898.1\|11395_12988_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_080944597.1\|13747_14119_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_046067899.1\|14115_14451_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_046067900.1\|14512_16078_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.1e-124	48.3
WP_080944598.1\|16105_16516_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_052721919.1\|16823_17117_-	hypothetical protein	NA	NA	NA	NA
WP_108240658.1\|17211_18298_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.4e-43	37.8
WP_046067904.1\|18817_19726_-	hypothetical protein	NA	NA	NA	NA
WP_108240659.1\|21511_22365_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_046067907.1\|22602_22947_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_046067908.1\|22960_23209_-	prevent-host-death protein	NA	NA	NA	NA
WP_046067909.1\|23450_24554_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_046072428.1\|24681_25659_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	3.3e-91	54.9
WP_046072429.1\|26068_26296_-	hypothetical protein	NA	NA	NA	NA
WP_046072430.1\|26509_26731_-	hypothetical protein	NA	NA	NA	NA
WP_046067910.1\|26846_27761_-	DMT family transporter	NA	NA	NA	NA
WP_046067911.1\|29475_30987_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.2e-81	36.7
WP_080944773.1\|31004_31361_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-16	41.2
WP_108240660.1\|32297_33251_+	DUF3626 domain-containing protein	NA	NA	NA	NA
WP_080944773.1\|33650_34007_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-16	41.2
WP_046067913.1\|34024_35536_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.1e-80	36.0
WP_046067898.1\|35843_37436_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_158528905.1\|38263_38887_-\|transposase	transposase	NA	NA	NA	NA
WP_046072435.1\|38908_39889_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	6.7e-92	54.6
WP_108240661.1\|40226_41567_+	hypothetical protein	NA	NA	NA	NA
WP_046067898.1\|41987_43580_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_052721921.1\|44635_45238_+	hypothetical protein	A0A0U4J920	Pseudomonas_phage	3.8e-13	35.7
WP_108240662.1\|45293_46380_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.4e-43	37.5
WP_046067917.1\|47495_48251_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	6.6e-71	53.9
WP_046067918.1\|48271_49786_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.6e-145	53.5

DBSCAN-SWA_2

225657 : 291469

Acidithiobacillus_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046068046.1\|225657_226908_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
WP_046068047.1\|227618_228938_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_046068048.1\|228984_230313_+	MFS transporter	NA	NA	NA	NA
WP_046068049.1\|230353_231256_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_046068050.1\|231257_232748_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_080944608.1\|232853_233006_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_046068051.1\|233187_233892_-	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	7.9e-10	32.7
WP_046068052.1\|233894_234827_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
WP_046068053.1\|235241_236030_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_046068054.1\|236035_236950_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_080944609.1\|237318_237660_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_046068056.1\|237755_238670_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046068057.1\|238760_239363_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046068058.1\|239523_240219_+	B3/4 domain-containing protein	NA	NA	NA	NA
WP_046068059.1\|240248_241142_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_046067918.1\|241655_243170_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.6e-145	53.5
WP_025163932.1\|243190_243946_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.3e-71	54.4
WP_046068060.1\|244499_245903_+	threonine synthase	NA	NA	NA	NA
WP_027606629.1\|245917_246355_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_041021436.1\|246472_247522_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_046068061.1\|247524_248943_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_046068062.1\|248994_250197_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_046068063.1\|250339_250657_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_080944610.1\|250831_251614_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_046068064.1\|251666_252395_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_046068065.1\|252391_253102_+	ABC transporter permease	NA	NA	NA	NA
WP_046068066.1\|253154_253916_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	5.5e-09	28.6
WP_046068067.1\|253928_254432_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_046072451.1\|254467_256357_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.7e-33	32.1
WP_046068068.1\|256515_257304_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_046068069.1\|257391_258027_-	LysE family translocator	NA	NA	NA	NA
WP_080944611.1\|258051_258765_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_046068070.1\|259026_259941_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_043049405.1\|260197_261220_+	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_108240664.1\|261925_263350_+	hypothetical protein	NA	NA	NA	NA
WP_046068072.1\|263383_264790_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_046068073.1\|264893_266537_+	alpha-D-glucose phosphate-specific phosphoglucomutase	NA	NA	NA	NA
WP_046068074.1\|266605_267301_-	pirin family protein	NA	NA	NA	NA
WP_046068075.1\|267519_269964_+	UvrD-helicase domain-containing protein	A0A1V0SAC2	Catovirus	1.0e-08	25.5
WP_026013572.1\|270014_270287_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_046068076.1\|270545_271355_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046068077.1\|271404_272811_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_046068078.1\|272838_273180_+	cupin domain-containing protein	NA	NA	NA	NA
WP_046068079.1\|273240_274320_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046068080.1\|274532_275000_+	hypothetical protein	NA	NA	NA	NA
WP_046068081.1\|275002_275788_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_043049392.1\|275987_277352_+	APC family permease	NA	NA	NA	NA
WP_046068082.1\|277361_278465_+	P1 family peptidase	NA	NA	NA	NA
WP_046068083.1\|278833_280267_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_046068084.1\|280314_280683_+\|protease	AprI/Inh family metalloprotease inhibitor	NA	NA	NA	NA
WP_046068085.1\|280784_282536_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	3.6e-27	30.5
WP_046068086.1\|282532_283846_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_046068087.1\|283848_285183_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_046068088.1\|285214_288172_+\|protease	autotransporter serine protease	NA	NA	NA	NA
WP_046068089.1\|288361_291469_+\|protease	autotransporter serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

760182 : 795598

uncultured_Caudovirales_phage(71.05%)

head,transposase,plate,integrase,tail

attL 787351:787365|attR 792946:792960

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046068430.1\|760182_760599_-	hypothetical protein	D2EBU5	Pseudomonas_phage	9.3e-27	45.1
WP_046068431.1\|761881_762457_-	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	3.0e-23	36.2
WP_046068432.1\|762453_763524_-\|plate	baseplate J/gp47 family protein	A0A2H4JC98	uncultured_Caudovirales_phage	1.7e-72	42.3
WP_046068433.1\|763525_763876_-	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	1.6e-35	64.3
WP_052721936.1\|763956_764499_-\|plate	baseplate assembly protein	A0A2H4JFE0	uncultured_Caudovirales_phage	6.2e-63	63.4
WP_046072485.1\|764498_765611_-\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	1.8e-162	75.1
WP_046068434.1\|765615_766986_-	hypothetical protein	A0A2H4JGT4	uncultured_Caudovirales_phage	2.0e-142	57.6
WP_046068437.1\|769523_769910_-	hypothetical protein	A0A2H4JD25	uncultured_Caudovirales_phage	4.9e-38	71.1
WP_046068438.1\|769914_770286_-	hypothetical protein	A0A2H4J9F8	uncultured_Caudovirales_phage	5.0e-48	74.0
WP_046068439.1\|770299_771400_-	hypothetical protein	A0A2H4JFT7	uncultured_Caudovirales_phage	2.6e-145	75.7
WP_046068440.1\|771396_771588_-	hypothetical protein	A0A2H4JED6	uncultured_Caudovirales_phage	1.2e-08	56.9
WP_046068441.1\|771587_772154_-	DUF1834 family protein	A0A2H4JEC0	uncultured_Caudovirales_phage	5.5e-54	55.2
WP_046068442.1\|772153_772645_-	DUF1320 family protein	A0A2H4JB66	uncultured_Caudovirales_phage	2.4e-50	61.3
WP_046068443.1\|772641_773196_-	hypothetical protein	NA	NA	NA	NA
WP_046068444.1\|773205_774099_-\|head	phage head protein	A0SMP3	Pseudomonas_virus	6.8e-91	56.8
WP_046068445.1\|774127_775102_-	hypothetical protein	A0A2H4J9A2	uncultured_Caudovirales_phage	8.2e-90	54.2
WP_046068446.1\|775356_775920_-	phage virion morphogenesis protein	A0A2H4J9E5	uncultured_Caudovirales_phage	9.6e-67	70.7
WP_046068447.1\|775929_777192_-	bacteriophage protein	A0A2H4IYU7	uncultured_Caudovirales_phage	2.9e-156	63.0
WP_046068448.1\|777194_778751_-	DUF935 domain-containing protein	A0A2H4JGA9	uncultured_Caudovirales_phage	3.9e-227	76.8
WP_046068449.1\|778750_780304_-	hypothetical protein	A0A2H4JF57	uncultured_Caudovirales_phage	6.6e-251	83.1
WP_046068450.1\|780300_781071_-	hypothetical protein	A0A1J0GVP2	Pseudoalteromonas_phage	2.2e-50	41.2
WP_046068451.1\|781067_781580_-	DUF3486 family protein	A0A2H4JD50	uncultured_Caudovirales_phage	2.5e-58	70.3
WP_046068452.1\|781584_781893_-	hypothetical protein	A0A2H4JGU5	uncultured_Caudovirales_phage	4.2e-40	71.6
WP_010564659.1\|781892_782201_-	hypothetical protein	A0A2H4J7V5	uncultured_Caudovirales_phage	2.3e-22	53.8
WP_046068453.1\|782197_782419_-	hypothetical protein	NA	NA	NA	NA
WP_046068454.1\|782405_783050_-	hypothetical protein	NA	NA	NA	NA
WP_108240667.1\|783046_783643_-	transglycosylase SLT domain-containing protein	A0A2H4J9H7	uncultured_Caudovirales_phage	3.4e-86	75.9
WP_046068456.1\|783686_783938_-	membrane protein	A0A2H4J783	uncultured_Caudovirales_phage	4.9e-23	69.9
WP_046068457.1\|783976_784318_-	hypothetical protein	NA	NA	NA	NA
WP_046068458.1\|784438_784933_-	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_052721937.1\|784932_785379_-	transcriptional regulator	A0A2H4J0B0	uncultured_Caudovirales_phage	3.1e-36	54.0
WP_046068459.1\|785375_785792_-	regulatory protein GemA	A0A2H4J581	uncultured_Caudovirales_phage	1.8e-38	63.7
WP_046068460.1\|785788_786067_-	hypothetical protein	NA	NA	NA	NA
WP_046068461.1\|786136_786808_-	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	7.2e-69	60.8
WP_046068462.1\|786812_787229_-	hypothetical protein	A0A2I2MUJ5	uncultured_Caudovirales_phage	3.5e-50	67.4
WP_046068463.1\|787303_787525_-	hypothetical protein	NA	NA	NA	NA
787351:787365	attL	NA	NA	NA	NA
WP_046068464.1\|787533_787950_-	hypothetical protein	NA	NA	NA	NA
WP_046068465.1\|787951_788230_-	hypothetical protein	A0A1C6ZDJ8	Pseudomonas_phage	2.5e-12	48.8
WP_046068466.1\|788231_788852_-	DUF3164 family protein	A0A0A1IVF8	Pseudomonas_phage	8.9e-82	74.5
WP_046068467.1\|788863_789187_-	hypothetical protein	NA	NA	NA	NA
WP_046068468.1\|789170_789551_-	hypothetical protein	A0A0A1IWY8	Pseudomonas_phage	3.1e-29	57.3
WP_052722012.1\|789547_790132_-	hypothetical protein	L7P7I3	Pseudomonas_phage	2.1e-32	44.4
WP_046068470.1\|790161_790881_-	ATP-binding protein	A0A2H4J809	uncultured_Caudovirales_phage	4.3e-96	72.8
WP_046068471.1\|790905_792939_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JEQ4	uncultured_Caudovirales_phage	1.7e-230	59.3
WP_046068472.1\|792931_793372_-	hypothetical protein	L7P7J4	Pseudomonas_phage	5.4e-57	75.5
792946:792960	attR	NA	NA	NA	NA
WP_080944627.1\|793374_793710_-	nucleotide excision repair protein	A0A2H4J3B6	uncultured_Caudovirales_phage	3.4e-27	57.1
WP_046068473.1\|793870_794575_+	c repressor	A0A076FRF7	Pseudomonas_phage	2.9e-81	63.1
WP_046072487.1\|794794_795598_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_4

992894 : 999124

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046072495.1\|992894_993287_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.6e-57	84.6
WP_043046620.1\|993288_993639_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.6e-40	69.2
WP_046068625.1\|993638_993917_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	9.0e-26	60.6
WP_046068626.1\|993913_994249_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.3e-44	76.6
WP_046068627.1\|994245_995247_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.1e-169	86.3
WP_046068628.1\|995335_996331_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_046068629.1\|996448_997843_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_046068630.1\|997843_999124_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.3e-98	53.6

DBSCAN-SWA_5

1320223 : 1369061

Pseudomonas_phage(63.83%)

head,portal,protease,capsid,holin,terminase,integrase,tail,tRNA

attL 1338555:1338569|attR 1362733:1362747

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046068854.1\|1320223_1320433_+	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	4.2e-12	58.2
WP_046068855.1\|1320526_1320865_+	hypothetical protein	A0A2H4IZV2	uncultured_Caudovirales_phage	5.1e-07	42.1
WP_046068856.1\|1320893_1321580_+	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	1.5e-125	91.6
WP_046068857.1\|1321566_1322073_-	lysozyme	A0A2H4IZW4	uncultured_Caudovirales_phage	1.8e-56	74.4
WP_046068858.1\|1322069_1322603_-	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	8.2e-76	78.0
WP_108240730.1\|1322661_1323093_-\|tail	phage tail protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.3e-15	58.0
WP_148666878.1\|1323224_1323536_-	hypothetical protein	NA	NA	NA	NA
WP_046068860.1\|1323756_1324437_-	hypothetical protein	NA	NA	NA	NA
WP_046068862.1\|1324756_1328416_-\|tail	phage tail protein	A0A2D1GNE3	Pseudomonas_phage	0.0e+00	66.9
WP_046068863.1\|1328551_1328971_+	hypothetical protein	NA	NA	NA	NA
WP_046068864.1\|1328997_1329585_-\|tail	tail assembly protein	A0A2D1GNM2	Pseudomonas_phage	3.8e-98	94.8
WP_046068865.1\|1329581_1330364_-	C40 family peptidase	A0A2D1GNP8	Pseudomonas_phage	2.4e-148	90.8
WP_046068866.1\|1330366_1331071_-\|tail	phage minor tail protein L	A0A2D1GNF3	Pseudomonas_phage	2.3e-134	97.0
WP_052721939.1\|1331119_1331470_-\|tail	phage tail protein	A0A2D1GNJ1	Pseudomonas_phage	4.1e-60	93.0
WP_046068868.1\|1331469_1334904_-\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	8.2e-294	63.7
WP_046068869.1\|1334962_1335373_-	hypothetical protein	NA	NA	NA	NA
WP_046068870.1\|1335435_1335645_-	hypothetical protein	A0A2D1GNK2	Pseudomonas_phage	2.1e-19	94.0
WP_046068871.1\|1335686_1336016_-	hypothetical protein	A0A2D1GNT5	Pseudomonas_phage	1.4e-46	89.0
WP_046068872.1\|1336055_1336553_-	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	4.0e-85	97.0
WP_046068873.1\|1336608_1336995_-	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	9.5e-58	87.5
WP_046068874.1\|1336987_1337491_-	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	4.4e-63	71.3
WP_046068875.1\|1337674_1338007_-\|head,tail	head-tail adaptor protein	A0A2D1GNG1	Pseudomonas_phage	4.2e-38	77.3
WP_046068876.1\|1338003_1338342_-\|head,tail	phage gp6-like head-tail connector protein	K7P6N0	Enterobacteria_phage	2.1e-13	35.8
1338555:1338569	attL	NA	NA	NA	NA
WP_046068878.1\|1338649_1339813_-\|capsid	phage major capsid protein	F1C582	Cronobacter_phage	4.3e-162	76.5
WP_046068879.1\|1339816_1340479_-\|head,protease	HK97 family phage prohead protease	F1C583	Cronobacter_phage	2.2e-78	67.0
WP_046068880.1\|1340497_1341769_-\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	1.7e-183	74.4
WP_046068881.1\|1341768_1343490_-\|terminase	terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	0.0e+00	95.1
WP_046068882.1\|1343489_1343975_-\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	2.1e-86	98.8
WP_046068883.1\|1344094_1344505_-	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	3.2e-64	85.5
WP_046068884.1\|1344507_1344837_-\|holin	phage holin, lambda family	A0A2D1GNJ3	Pseudomonas_phage	1.4e-57	100.0
WP_052721941.1\|1344969_1345533_-	hypothetical protein	NA	NA	NA	NA
WP_046068885.1\|1345705_1346059_-	antitermination protein Q	A0A2D1GNB4	Pseudomonas_phage	1.1e-57	89.7
WP_046072512.1\|1346062_1346392_-	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	7.6e-24	51.4
WP_046068886.1\|1346397_1347693_-\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	6.5e-127	55.6
WP_046068888.1\|1347898_1349269_-	replicative DNA helicase	A0A127KNK8	Pseudomonas_phage	1.8e-138	56.2
WP_080944638.1\|1349261_1349972_-	helix-turn-helix domain-containing protein	A0A0U4IBP5	Pseudomonas_phage	8.2e-31	60.5
WP_046068890.1\|1350638_1351334_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.3e-68	56.7
WP_046068891.1\|1351994_1352375_+	LuxR family transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	3.6e-25	64.3
WP_046068892.1\|1352634_1352997_+	hypothetical protein	NA	NA	NA	NA
WP_046068893.1\|1352993_1353308_+	hypothetical protein	NA	NA	NA	NA
WP_046068894.1\|1353399_1353747_+	hypothetical protein	NA	NA	NA	NA
WP_046068895.1\|1353792_1354608_+	DUF2303 family protein	I3PUY7	Vibrio_phage	4.8e-43	38.3
WP_046072514.1\|1354654_1355557_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_046068896.1\|1355614_1356394_+	DUF2786 domain-containing protein	A0A2H4JCP9	uncultured_Caudovirales_phage	5.5e-12	30.5
WP_046072515.1\|1356457_1356694_-	hypothetical protein	A0A1B0VP27	Pseudomonas_phage	2.1e-31	90.7
WP_046068897.1\|1356947_1357589_+	hypothetical protein	A0A2I7R6M5	Vibrio_phage	8.2e-14	27.5
WP_046068898.1\|1357585_1357897_+	DUF4406 domain-containing protein	A0A2K8I958	Pseudomonas_phage	1.4e-19	50.0
WP_046068899.1\|1357893_1358340_+	hypothetical protein	A0A2H4J7W7	uncultured_Caudovirales_phage	2.3e-07	44.1
WP_046068900.1\|1358668_1358998_+	hypothetical protein	A0A1B0VM42	Pseudomonas_phage	9.3e-46	72.5
WP_046068901.1\|1359047_1359383_+	hypothetical protein	W6MWX0	Pseudomonas_phage	2.9e-10	41.1
WP_046068902.1\|1359432_1359930_+	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	6.6e-27	48.8
WP_046068903.1\|1359966_1360188_+	hypothetical protein	A0A2H4J1L2	uncultured_Caudovirales_phage	1.1e-15	65.8
WP_046068904.1\|1360190_1360403_+	hypothetical protein	NA	NA	NA	NA
WP_046068905.1\|1360402_1361515_+\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	6.2e-33	32.4
WP_003174972.1\|1361771_1362128_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002553164.1\|1362108_1362411_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
WP_046068906.1\|1362414_1364793_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
1362733:1362747	attR	NA	NA	NA	NA
WP_003192486.1\|1364819_1365836_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.1e-28	39.3
WP_002553161.1\|1365945_1366302_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_002553160.1\|1366332_1366527_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_005789681.1\|1366587_1367121_-	translation initiation factor IF-3	NA	NA	NA	NA
WP_046068907.1\|1367138_1369061_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.8e-125	37.7

DBSCAN-SWA_6

1948970 : 2009154

uncultured_virus(25.0%)

bacteriocin,tRNA,transposase,integrase

attL 1979811:1979825|attR 2007020:2007034

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046069307.1\|1948970_1950359_+\|bacteriocin	lipid II-degrading bacteriocin	NA	NA	NA	NA
WP_046069308.1\|1950439_1950994_+	hypothetical protein	NA	NA	NA	NA
WP_046069309.1\|1951104_1951983_-	DUF1911 domain-containing protein	NA	NA	NA	NA
WP_005790867.1\|1952075_1952675_-	hypothetical protein	NA	NA	NA	NA
WP_046069310.1\|1952688_1953273_-	hypothetical protein	NA	NA	NA	NA
WP_046069311.1\|1955286_1955784_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_158528906.1\|1955857_1956985_-	DUF418 domain-containing protein	NA	NA	NA	NA
WP_046069313.1\|1957506_1958154_-	7-carboxy-7-deazaguanine synthase QueE	NA	NA	NA	NA
WP_046069314.1\|1958319_1959150_-	tol-pal system protein YbgF	NA	NA	NA	NA
WP_003193861.1\|1959156_1959657_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_080752841.1\|1959712_1961014_-	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_003193863.1\|1961010_1962084_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_003193864.1\|1962083_1962545_-	protein TolR	NA	NA	NA	NA
WP_043049112.1\|1962559_1963255_-	protein TolQ	NA	NA	NA	NA
WP_005790903.1\|1963256_1963712_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_017529216.1\|1963852_1964911_-	Holliday junction branch migration DNA helicase RuvB	A0A0E3HYS2	Synechococcus_phage	6.7e-05	31.4
WP_046069316.1\|1964911_1965523_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_032862494.1\|1965591_1966116_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_043051417.1\|1966288_1967035_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_046069317.1\|1967171_1968947_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	1.6e-11	25.9
WP_003193872.1\|1969055_1969277_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_046069318.1\|1969447_1969801_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA
WP_003193874.1\|1969982_1970456_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	3.7e-19	37.9
WP_046069319.1\|1970883_1971486_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	1.0e-10	47.6
WP_017847119.1\|1971557_1971764_-	protein SlyX	NA	NA	NA	NA
WP_046069320.1\|1971767_1972193_-	HIT domain-containing protein	NA	NA	NA	NA
WP_046069321.1\|1972937_1974218_+	OprD family porin	NA	NA	NA	NA
WP_046069322.1\|1974400_1975243_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_003193880.1\|1975380_1975866_-	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA
WP_046069323.1\|1975989_1976907_+	putative 2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_046069324.1\|1976953_1978990_+	PAS domain-containing protein	NA	NA	NA	NA
WP_046069325.1\|1978992_1979571_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_046069326.1\|1979689_1980634_-	Nudix family hydrolase	NA	NA	NA	NA
1979811:1979825	attL	NA	NA	NA	NA
WP_046069327.1\|1980653_1981871_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
WP_046069328.1\|1981995_1984731_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_046069329.1\|1985036_1985492_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_046069330.1\|1985496_1986975_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	6.4e-78	42.7
WP_046069331.1\|1987180_1989070_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	9.2e-29	44.8
WP_046069332.1\|1989234_1990356_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_046069333.1\|1990348_1991092_+	DUF2334 domain-containing protein	NA	NA	NA	NA
WP_046069334.1\|1991088_1992195_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_019821236.1\|1992318_1993167_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_005790963.1\|1993517_1993892_+	DNA binding protein	NA	NA	NA	NA
WP_046069335.1\|1993982_1995410_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_046069336.1\|1995572_1996265_+	RDD family protein	NA	NA	NA	NA
WP_046069337.1\|1996261_1997242_+	stage II sporulation protein M	NA	NA	NA	NA
WP_046069338.1\|1997228_1998758_+	DUF4129 domain-containing protein	NA	NA	NA	NA
WP_046069339.1\|1998754_1999912_+	DUF4350 domain-containing protein	NA	NA	NA	NA
WP_046069340.1\|2000053_2001199_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_046069341.1\|2001198_2002878_+	hypothetical protein	NA	NA	NA	NA
WP_046069342.1\|2002874_2004758_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_108240674.1\|2004703_2005183_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_046069344.1\|2005509_2007087_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.9e-121	47.5
2007020:2007034	attR	NA	NA	NA	NA
WP_046069345.1\|2007148_2007484_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_046072551.1\|2007480_2007804_-\|transposase	transposase	NA	NA	NA	NA
WP_046068046.1\|2007903_2009154_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1

DBSCAN-SWA_7

2202262 : 2209275

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046069463.1\|2202262_2203276_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	8.4e-13	32.1
WP_046069464.1\|2203389_2204643_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	8.5e-23	27.0
WP_046069465.1\|2204806_2205523_+	hypothetical protein	NA	NA	NA	NA
WP_046069466.1\|2205694_2206786_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A1X6WGT4	Pacmanvirus	4.5e-12	24.1
WP_080944662.1\|2206999_2207605_+	helix-turn-helix transcriptional regulator	A0A2H4J122	uncultured_Caudovirales_phage	5.3e-55	59.6
WP_046069467.1\|2207591_2208461_+	queuosine precursor transporter	A0A2H4J2N7	uncultured_Caudovirales_phage	9.5e-106	69.2
WP_046069468.1\|2208576_2209275_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.3e-93	71.3

DBSCAN-SWA_8

2342611 : 2391936

Vibrio_phage(15.38%)

transposase,tRNA,protease,integrase

attL 2330221:2330236|attR 2397662:2397677

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2330221:2330236	attL	NA	NA	NA	NA
WP_034117853.1\|2342611_2343529_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_003176137.1\|2343532_2343928_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_046069550.1\|2344087_2346604_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	5.5e-21	24.4
WP_043051766.1\|2346631_2348113_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_029298977.1\|2348160_2348637_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_003194191.1\|2349039_2349423_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_003194193.1\|2349427_2350183_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_043051840.1\|2350249_2351587_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_046069551.1\|2351603_2352455_-	dihydropteroate synthase	NA	NA	NA	NA
WP_046069552.1\|2352463_2354374_-\|protease	ATP-dependent zinc metalloprotease FtsH	I3UL75	Ostreococcus_lucimarinus_virus	6.5e-115	48.7
WP_034117848.1\|2354574_2355225_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_043048386.1\|2355331_2355640_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_043048387.1\|2355649_2356054_-	hypothetical protein	NA	NA	NA	NA
WP_043048492.1\|2356082_2356559_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_043048389.1\|2356561_2359783_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_046069553.1\|2359888_2361025_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.6e-47	33.8
WP_046069554.1\|2361284_2362091_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_046069555.1\|2362100_2363225_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.3e-25	38.6
WP_046069556.1\|2363550_2365467_-	molecular chaperone DnaK	A0A2P1EIW2	Megavirus	1.6e-145	46.7
WP_046069557.1\|2365569_2366139_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_046069558.1\|2366393_2368067_+	DNA repair protein RecN	NA	NA	NA	NA
WP_003194220.1\|2368152_2368557_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
WP_043048396.1\|2368655_2369183_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_046069559.1\|2369246_2369549_-	RnfH family protein	NA	NA	NA	NA
WP_005791512.1\|2369541_2369976_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_014719962.1\|2370144_2370627_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.5e-23	42.0
WP_034117836.1\|2370665_2371433_-	FCD domain-containing protein	NA	NA	NA	NA
WP_046069560.1\|2371685_2373380_+	L-lactate permease	NA	NA	NA	NA
WP_046069561.1\|2373450_2376261_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_046069562.1\|2376397_2376676_+	hypothetical protein	NA	NA	NA	NA
WP_046069563.1\|2377350_2378595_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	7.2e-115	48.7
WP_046069564.1\|2378961_2379681_+	hypothetical protein	NA	NA	NA	NA
WP_046069565.1\|2379761_2380832_-	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_080944786.1\|2381200_2381398_-	AlpA family phage regulatory protein	A0A1V0E8E5	Vibrio_phage	5.6e-06	37.3
WP_080944597.1\|2382240_2382612_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_046069568.1\|2382608_2382944_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_046067900.1\|2383005_2384571_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.1e-124	48.3
WP_080944598.1\|2384598_2385009_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_080944653.1\|2385134_2385884_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	5.4e-17	39.3
WP_046069569.1\|2386258_2387194_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	3.2e-59	41.1
WP_046068046.1\|2387235_2388486_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
WP_046069571.1\|2388980_2389295_+	hypothetical protein	NA	NA	NA	NA
WP_046069572.1\|2389295_2389640_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_080944787.1\|2389869_2390229_+	hypothetical protein	NA	NA	NA	NA
WP_046072566.1\|2390337_2390640_+	hypothetical protein	NA	NA	NA	NA
WP_108240675.1\|2390774_2391936_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.6e-86	54.3
2397662:2397677	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2502199 : 2532430

Leptospira_phage(37.5%)

integrase,transposase

attL 2494081:2494112|attR 2543444:2543475

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2494081:2494112	attL	NA	NA	NA	NA
WP_046068046.1\|2502199_2503450_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
WP_052721960.1\|2503502_2504288_-	hypothetical protein	NA	NA	NA	NA
WP_052721961.1\|2504444_2505344_-	hypothetical protein	NA	NA	NA	NA
WP_025163932.1\|2505346_2506102_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.3e-71	54.4
WP_046069645.1\|2506122_2507631_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	7.6e-143	53.3
WP_080944669.1\|2507770_2508736_-	ATP-dependent helicase	G3MA40	Bacillus_virus	9.8e-11	22.4
WP_046069646.1\|2508722_2510609_-	AAA family ATPase	NA	NA	NA	NA
WP_046069647.1\|2511373_2511679_+	hypothetical protein	NA	NA	NA	NA
WP_052721962.1\|2512087_2512924_+	WYL domain-containing protein	NA	NA	NA	NA
WP_052721963.1\|2512905_2513805_+	hypothetical protein	NA	NA	NA	NA
WP_080944653.1\|2513793_2514543_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	5.4e-17	39.3
WP_046069648.1\|2514668_2515256_+	hypothetical protein	NA	NA	NA	NA
WP_046069649.1\|2515252_2515927_+	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_080944670.1\|2515923_2519370_+	hypothetical protein	NA	NA	NA	NA
WP_046069650.1\|2519366_2520533_+	DUF2399 domain-containing protein	NA	NA	NA	NA
WP_148666888.1\|2522009_2523338_+	hypothetical protein	NA	NA	NA	NA
WP_080944773.1\|2523795_2524152_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-16	41.2
WP_046069652.1\|2524169_2525681_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	7.5e-82	36.4
WP_046069655.1\|2526589_2527492_-	hypothetical protein	NA	NA	NA	NA
WP_108240681.1\|2528305_2529392_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.8
WP_046069658.1\|2529595_2529826_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046069659.1\|2530322_2530745_-	hypothetical protein	NA	NA	NA	NA
WP_052722014.1\|2530741_2532430_-\|integrase	integrase	NA	NA	NA	NA
2543444:2543475	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2825052 : 2873849

Tupanvirus(20.0%)

holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046069837.1\|2825052_2825553_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_046069838.1\|2825726_2826614_+	acyltransferase	NA	NA	NA	NA
WP_046069839.1\|2826610_2827183_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_046069840.1\|2827319_2827778_+	hypothetical protein	NA	NA	NA	NA
WP_005792122.1\|2827871_2829071_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.4e-11	29.3
WP_005792124.1\|2829251_2830109_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_046069841.1\|2830119_2830752_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_046069842.1\|2830882_2833900_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_027605979.1\|2833896_2834199_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_010207084.1\|2834214_2835465_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_046069843.1\|2835487_2836741_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	4.3e-99	52.5
WP_046069844.1\|2836931_2837660_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_046069845.1\|2837750_2838791_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_046069846.1\|2838973_2839174_+	hypothetical protein	NA	NA	NA	NA
WP_046069847.1\|2839248_2841069_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_046069848.1\|2841343_2842789_+	cytosine permease	NA	NA	NA	NA
WP_046069849.1\|2842785_2843595_+	carbon-nitrogen hydrolase	NA	NA	NA	NA
WP_043046144.1\|2843599_2844700_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_046069850.1\|2844981_2846277_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_052721967.1\|2847322_2847766_+	hypothetical protein	O70709	Anomala_cuprea_entomopoxvirus	5.1e-07	36.8
WP_046068046.1\|2847781_2849032_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
WP_046069851.1\|2850348_2851119_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_046069852.1\|2851129_2852350_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_046069853.1\|2852349_2854293_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_046069854.1\|2854465_2856526_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_003194877.1\|2856542_2857073_-	hypothetical protein	NA	NA	NA	NA
WP_046069855.1\|2857150_2858128_-	membrane dipeptidase	NA	NA	NA	NA
WP_043046153.1\|2858346_2858748_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_046069856.1\|2858791_2859748_-	tyrosinase family protein	NA	NA	NA	NA
WP_046069857.1\|2859937_2860354_+	DUF3010 family protein	NA	NA	NA	NA
WP_046069858.1\|2860360_2860789_-	hypothetical protein	NA	NA	NA	NA
WP_046069859.1\|2860979_2862158_-	AAA family ATPase	NA	NA	NA	NA
WP_046069860.1\|2862226_2863171_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_046069861.1\|2863365_2864310_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046069862.1\|2864383_2865271_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_046069863.1\|2865351_2866317_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_046069864.1\|2866331_2866808_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_046069865.1\|2867061_2867325_+	hypothetical protein	NA	NA	NA	NA
WP_043046168.1\|2867413_2868517_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_046069866.1\|2869022_2870399_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_046069867.1\|2870814_2871762_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046069868.1\|2871828_2872674_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_043046175.1\|2872670_2873849_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-26	36.8

DBSCAN-SWA_11

3735636 : 3837282

110

Pseudomonas_phage(52.5%)

head,portal,lysis,protease,transposase,capsid,terminase,integrase,tail,tRNA

attL 3775591:3775643|attR 3807037:3807089

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043047386.1\|3735636_3736119_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_046070421.1\|3736132_3736912_-	EAL domain-containing protein	NA	NA	NA	NA
WP_046070422.1\|3737028_3737436_+	RNA-binding protein S4	NA	NA	NA	NA
WP_046070423.1\|3737511_3738315_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_046070424.1\|3738439_3739342_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_046070425.1\|3739521_3741063_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	1.4e-123	46.5
WP_046070426.1\|3741120_3741972_-	DMT family transporter	NA	NA	NA	NA
WP_046070427.1\|3742143_3742500_-	DUF1493 family protein	NA	NA	NA	NA
WP_046068046.1\|3742694_3743945_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
WP_046070428.1\|3743941_3744571_-	putative adenosine monophosphate-protein transferase Fic	NA	NA	NA	NA
WP_003187692.1\|3744570_3744741_-	DUF2559 family protein	NA	NA	NA	NA
WP_046070429.1\|3745008_3746946_+	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	3.7e-57	39.8
WP_046070430.1\|3746958_3747390_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_046070431.1\|3747457_3747943_-	surface antigen	NA	NA	NA	NA
WP_046070432.1\|3748262_3750611_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_046070433.1\|3750607_3751447_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_046070434.1\|3751691_3752132_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_046070435.1\|3752239_3752902_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_046070436.1\|3752989_3753556_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_046070437.1\|3753552_3754389_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_046070438.1\|3754500_3754956_-	thioesterase	NA	NA	NA	NA
WP_046070439.1\|3754982_3756368_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_046070440.1\|3756364_3758173_-	sensor histidine kinase	NA	NA	NA	NA
WP_046070441.1\|3758207_3759089_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_046070442.1\|3759085_3759631_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.5e-53	57.5
WP_046070443.1\|3759627_3760503_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.6e-103	62.8
WP_046070444.1\|3760499_3761582_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.9e-98	53.6
WP_046070445.1\|3761960_3763067_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	1.2e-105	51.1
WP_046070446.1\|3763303_3763531_+	hypothetical protein	NA	NA	NA	NA
WP_046070447.1\|3763583_3765671_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_046070448.1\|3766084_3767401_+	OprD family porin	NA	NA	NA	NA
WP_046070449.1\|3767507_3769085_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_046070450.1\|3769098_3769464_-	hypothetical protein	NA	NA	NA	NA
WP_046070451.1\|3769501_3770845_-	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_046070452.1\|3771039_3771324_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_052721971.1\|3772135_3772489_-	hypothetical protein	NA	NA	NA	NA
WP_046070453.1\|3772506_3772884_-	hypothetical protein	NA	NA	NA	NA
WP_046070454.1\|3772885_3773584_-	HNH endonuclease	NA	NA	NA	NA
WP_046070455.1\|3774246_3775404_-	ATP-binding protein	NA	NA	NA	NA
3775591:3775643	attL	NA	NA	NA	NA
WP_046070456.1\|3775755_3776904_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	5.9e-71	40.5
WP_019360433.1\|3776900_3777113_-	hypothetical protein	NA	NA	NA	NA
WP_046070457.1\|3777233_3779945_-	toprim domain protein	A0A2H4J936	uncultured_Caudovirales_phage	2.7e-284	53.7
WP_046070458.1\|3779944_3780178_-	hypothetical protein	NA	NA	NA	NA
WP_052721972.1\|3780252_3780489_-	hypothetical protein	NA	NA	NA	NA
WP_046070459.1\|3780485_3780995_-	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	1.3e-41	56.3
WP_046070460.1\|3780994_3781207_-	hypothetical protein	A0A2H4JE67	uncultured_Caudovirales_phage	6.9e-10	53.7
WP_080944704.1\|3781291_3781642_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046070462.1\|3781717_3781903_+	hypothetical protein	NA	NA	NA	NA
WP_046070463.1\|3781941_3782199_-	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	1.3e-15	49.4
WP_046070464.1\|3782273_3783215_-\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	5.3e-102	77.1
WP_052721974.1\|3782868_3785106_-\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	7.3e-267	70.2
WP_046070465.1\|3785267_3786191_+	hypothetical protein	A0A0U4JVV6	Pseudomonas_phage	1.3e-65	60.0
WP_046070466.1\|3786192_3787215_+\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	4.4e-126	68.2
WP_046070467.1\|3787211_3787937_+\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	1.5e-72	62.9
WP_046070468.1\|3788034_3788496_+\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	6.0e-43	60.1
WP_046070469.1\|3788492_3788942_+\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	6.1e-48	65.5
WP_046070470.1\|3788931_3789612_+	virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	4.6e-63	61.1
WP_046070471.1\|3789623_3790739_+	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	8.6e-144	69.3
WP_046070472.1\|3790745_3791195_+	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	2.0e-59	75.0
WP_046070473.1\|3791194_3791407_+	conjugal transfer protein TraR	G3EN77	Psychrobacter_phage	1.0e-05	50.0
WP_032879140.1\|3791403_3791610_+	hypothetical protein	NA	NA	NA	NA
WP_046070474.1\|3791606_3792140_+	lysozyme	NA	NA	NA	NA
WP_046070475.1\|3792139_3792592_+\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	1.1e-23	50.3
WP_046070476.1\|3792629_3792917_+	phage protein	A0A0U4B0P2	Pseudomonas_phage	1.1e-29	69.5
WP_046070478.1\|3793087_3795400_+\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	5.2e-143	40.2
WP_046070479.1\|3795396_3795714_+	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	1.1e-35	79.4
WP_046070480.1\|3795710_3796883_+	phage protein	A0A0U4JJ14	Pseudomonas_phage	9.3e-165	74.0
WP_046070481.1\|3796879_3797404_+\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	1.2e-82	82.2
WP_080944705.1\|3797412_3799935_+\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	3.6e-121	58.4
WP_046070482.1\|3799944_3800379_+	hypothetical protein	NA	NA	NA	NA
WP_046070483.1\|3800375_3801299_+	hypothetical protein	NA	NA	NA	NA
WP_046070484.1\|3801295_3801841_+	hypothetical protein	A0A0U4J942	Pseudomonas_phage	5.1e-57	66.7
WP_046070485.1\|3801837_3802542_+	hypothetical protein	A0A2I7RNK1	Vibrio_phage	1.4e-38	40.3
WP_046070486.1\|3802514_3803489_+	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	6.4e-127	69.3
WP_046070487.1\|3803656_3803980_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_046070488.1\|3803969_3804320_-	hypothetical protein	NA	NA	NA	NA
WP_158528912.1\|3804726_3804876_+	hypothetical protein	NA	NA	NA	NA
WP_046070491.1\|3805287_3805467_+	hypothetical protein	NA	NA	NA	NA
WP_046072630.1\|3805520_3805952_-	DUF2335 domain-containing protein	A0A1B0YZW3	Pseudomonas_phage	3.1e-41	63.3
WP_080944706.1\|3805980_3806199_-	hypothetical protein	A0A1B0YZV8	Pseudomonas_phage	4.6e-17	63.8
WP_046070492.1\|3807638_3808826_-	methyltransferase	NA	NA	NA	NA
3807037:3807089	attR	NA	NA	NA	NA
WP_046072631.1\|3808806_3809496_-	ABC transporter permease	NA	NA	NA	NA
WP_043047309.1\|3809534_3810230_-	ABC transporter permease	NA	NA	NA	NA
WP_003187758.1\|3810304_3811057_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_025859203.1\|3811070_3811844_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-19	31.1
WP_046070493.1\|3812398_3813790_+	GABA permease	NA	NA	NA	NA
WP_046070494.1\|3814131_3814545_-	hypothetical protein	NA	NA	NA	NA
WP_046070495.1\|3814702_3815668_+	arsenic resistance protein	NA	NA	NA	NA
WP_046070496.1\|3815755_3817363_+	membrane protein	NA	NA	NA	NA
WP_046070497.1\|3817385_3818546_-	Fic family protein	A0A1V0E025	Clostridioides_phage	3.9e-06	25.0
WP_005783902.1\|3818744_3819416_-	hypothetical protein	NA	NA	NA	NA
WP_046070498.1\|3819509_3819944_-	TonB family protein	NA	NA	NA	NA
WP_043047303.1\|3820370_3820643_-	oxidative damage protection protein	NA	NA	NA	NA
WP_046070499.1\|3820639_3821707_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_046070500.1\|3821703_3823926_-	AsmA family protein	NA	NA	NA	NA
WP_046070501.1\|3824252_3825914_+	OFA family MFS transporter	NA	NA	NA	NA
WP_003187781.1\|3826103_3826700_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_046070502.1\|3826699_3827338_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_043047297.1\|3827338_3827596_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_046070503.1\|3827635_3828373_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_003187786.1\|3828382_3829153_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_046070504.1\|3829219_3829975_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046070505.1\|3830154_3830928_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_046070506.1\|3830930_3832247_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	1.4e-28	31.3
WP_046070507.1\|3832277_3833573_-	murein hydrolase activator EnvC	A8ATH6	Listeria_phage	1.8e-07	34.8
WP_046070508.1\|3833830_3835357_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_003187796.1\|3835508_3835922_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_043047291.1\|3835923_3836178_+	glutaredoxin 3	V9QKN6	Rhizobium_phage	8.8e-12	39.7
WP_043047290.1\|3836220_3836700_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_046070509.1\|3836826_3837282_-\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_12

4626588 : 4665989

Leptospira_phage(21.43%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046070033.1\|4626588_4628142_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	5.3e-83	36.2
WP_080944789.1\|4628159_4628516_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.8e-18	39.8
WP_046067898.1\|4628865_4630458_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_046071035.1\|4630670_4632263_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_046071036.1\|4633098_4634097_+	carboxylate--amine ligase	NA	NA	NA	NA
WP_046071037.1\|4634175_4635315_+\|protease	trypsin-like serine protease	A0A1B1IRH0	uncultured_Mediterranean_phage	1.5e-10	28.3
WP_046071038.1\|4635388_4636516_+	phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	5.3e-32	31.0
WP_046071039.1\|4636505_4637264_+	hypothetical protein	NA	NA	NA	NA
WP_046071040.1\|4637256_4638351_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	6.0e-41	32.4
WP_046071041.1\|4638350_4639301_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_046071042.1\|4640051_4640639_+	TerD family protein	A0A1J0GW82	Streptomyces_phage	4.9e-13	29.8
WP_046071043.1\|4640638_4641808_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_046071044.1\|4641853_4642303_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_046072651.1\|4642347_4643352_+	TerC/Alx family metal homeostasis membrane protein	A0A291LBC5	Escherichia_phage	7.2e-65	45.2
WP_046071045.1\|4643376_4643952_+	TerD family protein	A0A2L1IWC0	Streptomyces_phage	6.2e-05	33.1
WP_046071046.1\|4644034_4644613_+	TerD family protein	NA	NA	NA	NA
WP_052721977.1\|4644777_4645779_+	hypothetical protein	NA	NA	NA	NA
WP_046071047.1\|4645879_4646836_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_080944719.1\|4646972_4648166_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_046071048.1\|4648218_4649463_-	tellurium resistance protein	NA	NA	NA	NA
WP_080944597.1\|4650222_4650594_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_046069568.1\|4650590_4650926_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_046071049.1\|4650987_4652553_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	6.3e-124	48.1
WP_080944598.1\|4652580_4652991_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_108240702.1\|4653088_4654051_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.7e-26	27.7
WP_046071051.1\|4655004_4656258_-	TerD family protein	NA	NA	NA	NA
WP_078466137.1\|4657459_4657936_+	hypothetical protein	NA	NA	NA	NA
WP_046071053.1\|4657958_4658816_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_046071054.1\|4658825_4660799_+	hypothetical protein	NA	NA	NA	NA
WP_046071055.1\|4660810_4662022_+	hypothetical protein	NA	NA	NA	NA
WP_046071056.1\|4662105_4662582_+	hypothetical protein	NA	NA	NA	NA
WP_046071057.1\|4662666_4663092_+	hypothetical protein	NA	NA	NA	NA
WP_046071058.1\|4663221_4663764_-	DUF1523 family protein	A0A219UQV4	Bacillus_phage	3.5e-05	29.2
WP_052721978.1\|4663963_4664857_-	hypothetical protein	NA	NA	NA	NA
WP_108240677.1\|4664901_4665989_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-42	37.8

DBSCAN-SWA_13

4797350 : 4895081

105

uncultured_Caudovirales_phage(51.79%)

head,portal,protease,transposase,capsid,holin,terminase,plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046071150.1\|4797350_4797821_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_046071151.1\|4797902_4798946_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-22	30.4
WP_046071152.1\|4798942_4799863_-	ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	4.2e-19	27.4
WP_046071153.1\|4800298_4802407_+	molybdopterin oxidoreductase family protein	NA	NA	NA	NA
WP_046071154.1\|4802493_4802832_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_043048827.1\|4802895_4803366_-	bacterioferritin	NA	NA	NA	NA
WP_017526354.1\|4803566_4803785_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
WP_003172097.1\|4804027_4804630_+	peroxiredoxin	NA	NA	NA	NA
WP_046071155.1\|4804695_4805367_-	ribonuclease T	NA	NA	NA	NA
WP_046071156.1\|4805363_4806410_-	dihydroorotase	NA	NA	NA	NA
WP_046071157.1\|4806567_4807476_+	OmpA family protein	NA	NA	NA	NA
WP_034118348.1\|4807605_4808823_+	argininosuccinate synthase	NA	NA	NA	NA
WP_003188986.1\|4809447_4810080_+	response regulator transcription factor	NA	NA	NA	NA
WP_046071158.1\|4810163_4810346_-	hypothetical protein	NA	NA	NA	NA
WP_046071159.1\|4810453_4811092_-	endonuclease III	NA	NA	NA	NA
WP_046071160.1\|4811203_4812373_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_046071161.1\|4812457_4814509_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_046071162.1\|4814682_4815777_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_046071163.1\|4816271_4816595_-	ferredoxin family protein	NA	NA	NA	NA
WP_046071164.1\|4816737_4819329_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.1e-29	21.9
WP_046071165.1\|4819375_4820620_-	DUF3596 domain-containing protein	A0A1I9KF78	Aeromonas_phage	2.2e-71	41.0
WP_046071167.1\|4820883_4821810_-	hypothetical protein	NA	NA	NA	NA
WP_046071168.1\|4821806_4823798_-	DNA cytosine methyltransferase	A0A0U1T6D1	Pseudomonas_phage	1.5e-202	72.9
WP_046071169.1\|4824123_4824666_-	phosphohydrolase	A0A2D1GNL9	Pseudomonas_phage	1.5e-29	43.0
WP_046071170.1\|4824662_4824884_-	hypothetical protein	NA	NA	NA	NA
WP_080944653.1\|4825164_4825914_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	5.4e-17	39.3
WP_046071171.1\|4825902_4826319_-	hypothetical protein	NA	NA	NA	NA
WP_148666902.1\|4826372_4826570_-	hypothetical protein	NA	NA	NA	NA
WP_046071172.1\|4826571_4826895_-	transcriptional regulator	NA	NA	NA	NA
WP_046071173.1\|4827124_4827409_-	DNA-binding protein	NA	NA	NA	NA
WP_046071174.1\|4827418_4827997_-	hypothetical protein	NA	NA	NA	NA
WP_046071175.1\|4828250_4829033_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	2.0e-46	43.0
WP_080944721.1\|4829120_4829378_+	hypothetical protein	NA	NA	NA	NA
WP_108240704.1\|4829670_4830231_+	hypothetical protein	NA	NA	NA	NA
WP_046071177.1\|4830223_4830451_+	TraR/DksA family transcriptional regulator	A2I309	Vibrio_virus	3.2e-05	40.8
WP_046071178.1\|4830440_4832663_+	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	4.8e-194	47.7
WP_046071179.1\|4832655_4833021_+	hypothetical protein	NA	NA	NA	NA
WP_046071180.1\|4833538_4833883_+\|holin	pyocin R2, holin	A0A2H4J893	uncultured_Caudovirales_phage	2.8e-45	81.5
WP_046071181.1\|4834079_4834643_+	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	3.1e-33	42.6
WP_046071182.1\|4834647_4836648_+\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	83.5
WP_046071183.1\|4836649_4837087_-	hypothetical protein	NA	NA	NA	NA
WP_046071184.1\|4837085_4837337_+	hypothetical protein	NA	NA	NA	NA
WP_046071185.1\|4837377_4837584_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	5.3e-23	77.9
WP_046071186.1\|4837583_4839065_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	7.5e-244	84.8
WP_046071187.1\|4839061_4840204_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.5e-138	69.5
WP_046071188.1\|4840200_4840539_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	6.8e-44	84.4
WP_046071189.1\|4840600_4841596_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	9.7e-171	88.5
WP_046071190.1\|4841598_4841919_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	2.2e-39	71.4
WP_046071191.1\|4841915_4842575_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	2.3e-80	69.9
WP_046071192.1\|4842574_4843090_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	5.9e-63	67.3
WP_046072662.1\|4843119_4843653_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.2e-50	73.1
WP_080944722.1\|4843710_4843980_+	hypothetical protein	A0A2H4J885	uncultured_Caudovirales_phage	3.0e-10	59.3
WP_046071193.1\|4843985_4844312_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	6.2e-34	66.0
WP_046071194.1\|4844308_4845190_+\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	4.0e-104	67.5
WP_046071195.1\|4845191_4845881_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	6.0e-71	69.0
WP_052721979.1\|4845877_4847761_+	hypothetical protein	A4PE45	Ralstonia_virus	2.6e-68	49.1
WP_046071196.1\|4847769_4848147_+\|tail	tail protein	NA	NA	NA	NA
WP_046071197.1\|4848249_4849416_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	6.2e-169	77.4
WP_046071198.1\|4849428_4849932_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	2.6e-63	71.9
WP_080944723.1\|4849946_4850546_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	3.3e-17	50.0
WP_046071199.1\|4850696_4853852_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	3.1e-90	36.9
WP_046071200.1\|4853861_4854707_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	2.5e-111	69.6
WP_046071201.1\|4854681_4854888_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	9.0e-23	73.1
WP_046071202.1\|4854981_4856028_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.4e-148	75.7
WP_046071203.1\|4856076_4856640_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	1.3e-84	80.7
WP_046071204.1\|4856621_4857164_+	lysozyme	B5TK84	Pseudomonas_phage	4.9e-44	57.5
WP_046071205.1\|4857313_4858108_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	9.3e-100	65.8
WP_046071206.1\|4858113_4858815_-	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	5.0e-57	50.4
WP_148666903.1\|4859455_4862176_+	hypothetical protein	NA	NA	NA	NA
WP_080944724.1\|4864446_4864629_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_046071210.1\|4865101_4867789_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_046071211.1\|4867853_4868909_+	hydroxyacid dehydrogenase	M1NSB9	Streptococcus_phage	1.1e-20	32.5
WP_046071212.1\|4868936_4869590_+	RraA family protein	NA	NA	NA	NA
WP_046072667.1\|4869631_4869826_+	ultraviolet light resistance protein B	NA	NA	NA	NA
WP_014717155.1\|4869887_4870259_-	hypothetical protein	NA	NA	NA	NA
WP_046071213.1\|4870251_4870740_-	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	2.2e-27	45.3
WP_080889059.1\|4870981_4871716_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.7e-119	88.1
WP_046071214.1\|4872306_4872645_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.1e-44	86.4
WP_046071215.1\|4872668_4873184_+	hypothetical protein	NA	NA	NA	NA
WP_046071216.1\|4873187_4873799_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	3.3e-44	55.3
WP_046071217.1\|4874138_4875134_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	1.7e-111	63.8
WP_046071218.1\|4875130_4875769_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	3.6e-38	51.9
WP_046071219.1\|4875765_4876296_+\|tail	tail fiber protein	B0ZSG1	Halomonas_phage	6.5e-49	56.8
WP_046072668.1\|4876349_4877102_+	hypothetical protein	NA	NA	NA	NA
WP_046071220.1\|4877111_4877348_+	hypothetical protein	NA	NA	NA	NA
WP_046071221.1\|4877611_4878778_+\|tail	tail protein	B0ZSG8	Halomonas_phage	3.2e-125	57.2
WP_046071222.1\|4878777_4879284_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	1.3e-22	34.5
WP_046071223.1\|4879467_4880040_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	3.6e-29	39.8
WP_046071224.1\|4880167_4882009_+	hypothetical protein	NA	NA	NA	NA
WP_046071225.1\|4882008_4882392_+\|tail	phage tail protein	B0ZSH2	Halomonas_phage	1.3e-35	59.1
WP_046071226.1\|4882384_4882597_+\|tail	tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	1.8e-18	62.9
WP_046071227.1\|4882606_4883617_+\|tail	phage-like tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	1.5e-99	55.1
WP_046071228.1\|4883684_4884242_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	9.8e-80	77.0
WP_046071229.1\|4884229_4884709_+	lysozyme	B5TK84	Pseudomonas_phage	2.0e-36	55.1
WP_046071230.1\|4884791_4885292_+	CinA family protein	B5TK85	Pseudomonas_phage	9.1e-69	80.7
WP_005785454.1\|4885375_4886434_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4
WP_043048890.1\|4886442_4886910_+	recombination regulator RecX	NA	NA	NA	NA
WP_046071231.1\|4888288_4889401_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_043048893.1\|4889693_4890128_-	hypothetical protein	NA	NA	NA	NA
WP_046071232.1\|4890307_4891027_+	DTW domain-containing protein	NA	NA	NA	NA
WP_046071233.1\|4891279_4891930_+	response regulator transcription factor	NA	NA	NA	NA
WP_043048897.1\|4892005_4892368_+	diacylglycerol kinase	NA	NA	NA	NA
WP_021492457.1\|4892371_4893358_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003172178.1\|4893423_4894203_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_046071234.1\|4894385_4895081_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA

DBSCAN-SWA_14

4994682 : 4999646

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046071303.1\|4994682_4995432_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.3e-63	50.2
WP_003189211.1\|4995431_4996109_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
WP_046071304.1\|4996317_4997154_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
WP_046071305.1\|4997259_4998270_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
WP_002554837.1\|4998482_4998692_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
WP_003189215.1\|4999079_4999646_+	dCTP deaminase	S5VM63	Pseudomonas_phage	3.7e-74	73.3

DBSCAN-SWA_15

5962914 : 6024916

uncultured_Caudovirales_phage(35.71%)

plate,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046071982.1\|5962914_5964582_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.9e-58	32.1
WP_046071983.1\|5964711_5965605_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046071984.1\|5965665_5967525_-	DUF3857 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_046071985.1\|5967672_5968773_-	DNA alkylation repair protein	NA	NA	NA	NA
WP_046071986.1\|5968794_5970141_-	glutamine synthetase	NA	NA	NA	NA
WP_046071987.1\|5970152_5970710_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046071988.1\|5970771_5971119_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_046071989.1\|5971222_5971531_+	RcnB family protein	NA	NA	NA	NA
WP_046071990.1\|5971566_5971839_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_046071991.1\|5971941_5973438_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046071992.1\|5973641_5974610_+	hypothetical protein	NA	NA	NA	NA
WP_046071993.1\|5974688_5975309_+	lipoprotein	NA	NA	NA	NA
WP_046071995.1\|5975643_5975988_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_046071996.1\|5975999_5976599_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046071997.1\|5976611_5977349_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046071998.1\|5977423_5978584_+	cytochrome P450	NA	NA	NA	NA
WP_043050225.1\|5978580_5978925_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_046071999.1\|5979544_5982250_+	magnesium-translocating P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	5.1e-41	24.4
WP_043050227.1\|5982379_5983096_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	7.0e-14	41.3
WP_046072000.1\|5983385_5984012_+	response regulator transcription factor	NA	NA	NA	NA
WP_046072709.1\|5984055_5987628_+	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	4.0e-33	32.5
WP_046072001.1\|5987762_5988185_+	chemotaxis protein CheY	NA	NA	NA	NA
WP_156382912.1\|5988181_5988349_-	hypothetical protein	NA	NA	NA	NA
WP_046072002.1\|5988411_5989494_-	3-deoxy-7-phosphoheptulonate synthase	A0A1Z1LZD8	Serratia_phage	1.6e-89	50.6
WP_046072003.1\|5990111_5990861_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_046072004.1\|5990861_5991308_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046072005.1\|5991343_5991583_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	2.3e-17	65.2
WP_046072006.1\|5991665_5992031_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	2.4e-26	58.1
WP_003190387.1\|5992182_5992824_+	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_043050236.1\|5992825_5994649_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_034119069.1\|5994681_5995242_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_080944746.1\|5995491_5995716_+	DUF2165 family protein	NA	NA	NA	NA
WP_046072008.1\|5995654_5995954_-	hypothetical protein	NA	NA	NA	NA
WP_158528915.1\|5996498_5996636_+	hypothetical protein	NA	NA	NA	NA
WP_046072009.1\|5997635_5997833_-	hypothetical protein	NA	NA	NA	NA
WP_080944747.1\|5997994_5998678_-	RHS repeat protein	NA	NA	NA	NA
WP_080944748.1\|5999053_5999929_-	RHS repeat-associated core domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.6e-31	40.8
WP_046072012.1\|6000100_6000700_-	hypothetical protein	NA	NA	NA	NA
WP_080944749.1\|6000699_6002109_-	RHS repeat-associated core domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	6.8e-29	55.3
WP_052721995.1\|6002587_6006733_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	2.3e-32	42.1
WP_046072013.1\|6006739_6007201_-	DUF1795 domain-containing protein	NA	NA	NA	NA
WP_046072014.1\|6007238_6007820_-	DcrB-related protein	NA	NA	NA	NA
WP_046072015.1\|6007826_6009698_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	8.7e-56	28.6
WP_046072016.1\|6009769_6010531_-	hypothetical protein	NA	NA	NA	NA
WP_148666914.1\|6011312_6011912_-	hypothetical protein	NA	NA	NA	NA
WP_080944773.1\|6011974_6012331_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-16	41.2
WP_046067911.1\|6012348_6013860_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.2e-81	36.7
WP_148666915.1\|6013811_6014357_-	hypothetical protein	NA	NA	NA	NA
WP_046072018.1\|6014885_6015434_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_046072019.1\|6015423_6016923_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_046072020.1\|6016948_6017431_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_046072021.1\|6017430_6019263_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_046072022.1\|6019226_6020297_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_046072023.1\|6020293_6022885_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.6e-87	32.1
WP_148666916.1\|6022916_6023576_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_046072024.1\|6023572_6024916_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_16

6497757 : 6661325

105

Leptospira_phage(41.18%)

integrase,tail,protease,transposase

attL 6528529:6528545|attR 6541953:6541969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046072345.1\|6497757_6498627_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_043051201.1\|6498641_6498902_+	DUF1315 family protein	NA	NA	NA	NA
WP_046072346.1\|6498898_6499729_+	DUF2797 domain-containing protein	NA	NA	NA	NA
WP_046072347.1\|6499742_6502400_+	aminopeptidase N	NA	NA	NA	NA
WP_046072348.1\|6503101_6503818_+	YafY family transcriptional regulator	NA	NA	NA	NA
WP_043051616.1\|6503871_6504207_+	ketosteroid isomerase	NA	NA	NA	NA
WP_046072349.1\|6504222_6505329_+	cell division protein ZapE	NA	NA	NA	NA
WP_046072350.1\|6505494_6505986_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046072351.1\|6506088_6506301_-	hypothetical protein	NA	NA	NA	NA
WP_046072352.1\|6506528_6508271_-	phosphoethanolamine transferase CptA	NA	NA	NA	NA
WP_156382907.1\|6508425_6508602_-	hypothetical protein	NA	NA	NA	NA
WP_046072353.1\|6508861_6509845_+	decarboxylating 6-phosphogluconate dehydrogenase	E3SIC7	Synechococcus_phage	1.5e-83	47.0
WP_046072354.1\|6509841_6511365_+	glucose-6-phosphate dehydrogenase	C7BV85	Synechococcus_phage	7.5e-74	36.0
WP_046072355.1\|6511361_6512186_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_043051608.1\|6512251_6512512_-	hypothetical protein	NA	NA	NA	NA
WP_046072356.1\|6512846_6514169_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_046072357.1\|6514223_6515522_-	hypothetical protein	NA	NA	NA	NA
WP_046072358.1\|6515572_6516316_-	hypothetical protein	NA	NA	NA	NA
WP_046072359.1\|6516353_6517034_-	C39 family peptidase	NA	NA	NA	NA
WP_046072360.1\|6517095_6517833_-	hypothetical protein	NA	NA	NA	NA
WP_046072361.1\|6517902_6518454_-	hypothetical protein	NA	NA	NA	NA
WP_046072362.1\|6518453_6518906_-	hypothetical protein	NA	NA	NA	NA
WP_046072363.1\|6519220_6520216_-	FecR family protein	NA	NA	NA	NA
WP_046072364.1\|6520368_6520638_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_046072365.1\|6520658_6525797_-	hypothetical protein	NA	NA	NA	NA
WP_046072366.1\|6525969_6527004_+	Ldh family oxidoreductase	NA	NA	NA	NA
WP_046072367.1\|6527045_6527366_-	DUF883 family protein	NA	NA	NA	NA
WP_003190904.1\|6527530_6527785_+	hypothetical protein	NA	NA	NA	NA
WP_046072737.1\|6527756_6528674_-	LysR family transcriptional regulator	NA	NA	NA	NA
6528529:6528545	attL	NA	NA	NA	NA
WP_046072368.1\|6529480_6530122_+	hypothetical protein	NA	NA	NA	NA
WP_052722001.1\|6530114_6531980_+	hypothetical protein	NA	NA	NA	NA
WP_148666918.1\|6531976_6532939_+	ATP-binding protein	NA	NA	NA	NA
WP_148666919.1\|6533660_6534122_+	hypothetical protein	NA	NA	NA	NA
WP_080944773.1\|6534977_6535334_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-16	41.2
WP_046067911.1\|6535351_6536863_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.2e-81	36.7
WP_046072370.1\|6537913_6539059_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_046072371.1\|6539137_6540043_+	DNA-binding protein	NA	NA	NA	NA
WP_046067898.1\|6540207_6541800_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_046072372.1\|6542891_6543788_-	hypothetical protein	NA	NA	NA	NA
6541953:6541969	attR	NA	NA	NA	NA
WP_108240681.1\|6544849_6545937_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.8
WP_148666920.1\|6548306_6548987_+	hypothetical protein	NA	NA	NA	NA
WP_046072373.1\|6549169_6549754_+	hypothetical protein	NA	NA	NA	NA
WP_148666921.1\|6549800_6550994_+	hypothetical protein	NA	NA	NA	NA
WP_046072375.1\|6551132_6551588_+\|tail	phage tail protein	NA	NA	NA	NA
WP_046072376.1\|6551644_6552850_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
WP_052722002.1\|6552949_6554599_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	1.1e-22	36.8
WP_052722003.1\|6554719_6556054_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
WP_052722004.1\|6556056_6556587_+\|tail	phage tail protein	NA	NA	NA	NA
WP_046072377.1\|6556583_6556775_+	hypothetical protein	NA	NA	NA	NA
WP_052722005.1\|6556771_6557356_+	hypothetical protein	NA	NA	NA	NA
WP_046072378.1\|6557461_6559510_+	hypothetical protein	NA	NA	NA	NA
WP_052722006.1\|6559523_6559958_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_046072379.1\|6559954_6560374_+	hypothetical protein	NA	NA	NA	NA
WP_046072380.1\|6560434_6563821_+	hypothetical protein	NA	NA	NA	NA
WP_046072381.1\|6563813_6566969_+	hypothetical protein	NA	NA	NA	NA
WP_046072382.1\|6567071_6568895_+	hypothetical protein	NA	NA	NA	NA
WP_080944808.1\|6568825_6571066_+	ATP-binding protein	A0A2D2W2C3	Stenotrophomonas_phage	4.0e-07	35.4
WP_046072384.1\|6571115_6571988_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_046072385.1\|6572634_6573261_+	response regulator transcription factor	NA	NA	NA	NA
WP_158528918.1\|6573272_6576905_+	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	2.6e-40	34.5
WP_046068046.1\|6577640_6578891_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
WP_080944789.1\|6580728_6581085_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.8e-18	39.8
WP_046072388.1\|6581102_6582656_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.0e-82	35.5
WP_046067898.1\|6582963_6584556_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_108240681.1\|6585812_6586899_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.8
WP_080944762.1\|6587469_6587901_-\|transposase	transposase	NA	NA	NA	NA
WP_046072389.1\|6589032_6590712_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_148666922.1\|6596300_6596510_-\|transposase	transposase	NA	NA	NA	NA
WP_046072390.1\|6596537_6597806_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.3e-26	29.1
WP_108240720.1\|6597847_6598935_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.9e-42	37.8
WP_158528919.1\|6604316_6604463_+	hypothetical protein	NA	NA	NA	NA
WP_046072393.1\|6604490_6604793_+	hypothetical protein	NA	NA	NA	NA
WP_046072394.1\|6604876_6605119_+	hypothetical protein	NA	NA	NA	NA
WP_046068046.1\|6605131_6606382_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-48	47.1
WP_080944597.1\|6606653_6607025_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_046067899.1\|6607021_6607357_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_046067900.1\|6607418_6608984_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.1e-124	48.3
WP_080944598.1\|6609011_6609422_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_108240681.1\|6609964_6611052_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.8
WP_046072395.1\|6611203_6611575_+	DNA binding protein	NA	NA	NA	NA
WP_046072396.1\|6611975_6612260_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_080944789.1\|6614292_6614649_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.8e-18	39.8
WP_046070033.1\|6614666_6616220_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	5.3e-83	36.2
WP_046067898.1\|6616527_6618120_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_046069645.1\|6618218_6619727_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	7.6e-143	53.3
WP_025163932.1\|6619747_6620503_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.3e-71	54.4
WP_108240721.1\|6620923_6622010_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-43	37.8
WP_158528920.1\|6623086_6623230_+	hypothetical protein	NA	NA	NA	NA
WP_046072398.1\|6623336_6623990_-	hypothetical protein	NA	NA	NA	NA
WP_148666923.1\|6626444_6626654_+\|transposase	transposase	NA	NA	NA	NA
WP_046072399.1\|6628030_6629425_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	9.4e-31	30.8
WP_046067898.1\|6630479_6632072_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_108240723.1\|6633671_6634418_+	DUF3626 domain-containing protein	NA	NA	NA	NA
WP_148666924.1\|6634852_6635305_-	hypothetical protein	NA	NA	NA	NA
WP_148666925.1\|6638154_6638469_+	hypothetical protein	NA	NA	NA	NA
WP_080944763.1\|6639465_6645273_+	hypothetical protein	NA	NA	NA	NA
WP_080944772.1\|6645733_6646090_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	6.3e-16	41.2
WP_046067897.1\|6646107_6647619_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.4e-82	36.4
WP_046071035.1\|6647926_6649519_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_046071035.1\|6649839_6651432_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.7e-29	30.5
WP_046072405.1\|6651612_6652593_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	9.7e-99	57.6
WP_080944765.1\|6653215_6654592_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.2e-40	32.6
WP_080944766.1\|6655640_6657512_-	serine hydrolase	NA	NA	NA	NA
WP_158528921.1\|6659082_6659253_-	carbon storage regulator	NA	NA	NA	NA
WP_046072407.1\|6659813_6661325_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.8e-81	36.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011117

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection