CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010812	Vibrio cholerae strain 10432-62 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,WYL,DinG	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010812_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010812_1

3671076-3671320

Orphan

Consensus_repeat	Method
AAAATGTGCCTCCTTAGCTCAGTCGGTAGAGCAACGGACTGATAATCCGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP010812_1

>merge|NZ_CP010812|1|3671076-3671320|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGATTCCGGCAGCCGGCACCACTTAAAATTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCACTATTAAAAGTTGTGCCATAGACACAATAAAAATTGTTCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGC

>NZ_CP010812|1|1|3671076-3671320|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGT	CGCCAGTTCGATTCCGGCAGCCGGCACCACTTAAAATTT
GCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGG	TGGTTCGATTCCGCCTCGAGGCACCACTATTAAAAGTTGTGCCATAGACACAATAAAAATTGT
TCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010812.1\|WP_000124738.1\|3669342_3669615_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP010812.1\|WP_046127147.1\|3680874_3681255_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP010812.1\|WP_046127146.1\|3675298_3677644_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP010812.1\|WP_046127143.1\|3667308_3668028_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP010812.1\|WP_000095776.1\|3678981_3679974_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP010812.1\|WP_000805056.1\|3666277_3667198_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NZ_CP010812.1\|WP_000973544.1\|3682224_3682722_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP010812.1\|WP_000780521.1\|3677696_3678992_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP010812.1\|WP_046127142.1\|3664848_3666024_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP010812.1\|WP_001243262.1\|3679987_3680803_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP010812.1\|WP_046127379.1\|3668267_3669329_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP010812.1\|WP_000954087.1\|3682734_3683208_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|182143
NZ_CP010812.1\|WP_046127144.1\|3671611_3673237_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP010812.1\|WP_001230176.1\|3669716_3670844_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_CP010812.1\|WP_001087261.1\|3662858_3663416_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|223833
NZ_CP010812.1\|WP_000035028.1\|3681265_3682075_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
NZ_CP010812.1\|WP_000741915.1\|3663415_3663706_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP010812.1\|WP_046127141.1\|3664252_3664855_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP010812.1\|WP_001233674.1\|3663751_3664183_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NZ_CP010812.1\|WP_046127145.1\|3674285_3675140_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512

Protein	Function_ID	Function_description	E-value
NZ_CP010812.1\|WP_000124738.1\|3669342_3669615_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	5.47988e-59
NZ_CP010812.1\|WP_046127147.1\|3680874_3681255_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	5.61158e-75
NZ_CP010812.1\|WP_046127146.1\|3675298_3677644_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP010812.1\|WP_046127143.1\|3667308_3668028_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.67116e-111
NZ_CP010812.1\|WP_000095776.1\|3678981_3679974_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP010812.1\|WP_000805056.1\|3666277_3667198_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP010812.1\|WP_000973544.1\|3682224_3682722_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	5.65999e-91
NZ_CP010812.1\|WP_000780521.1\|3677696_3678992_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	9.14533e-157
NZ_CP010812.1\|WP_046127142.1\|3664848_3666024_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP010812.1\|WP_001243262.1\|3679987_3680803_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.27746e-146
NZ_CP010812.1\|WP_046127379.1\|3668267_3669329_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_CP010812.1\|WP_000954087.1\|3682734_3683208_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	7.45224e-67
NZ_CP010812.1\|WP_046127144.1\|3671611_3673237_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.41191e-58
NZ_CP010812.1\|WP_001230176.1\|3669716_3670844_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	9.42926e-157
NZ_CP010812.1\|WP_001087261.1\|3662858_3663416_+\|YggT-family-protein	gnl\|CDD\|223833	COG0762, COG0762, Predicted integral membrane protein [Function unknown].	2.77868e-12
NZ_CP010812.1\|WP_000035028.1\|3681265_3682075_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	2.28145e-170
NZ_CP010812.1\|WP_000741915.1\|3663415_3663706_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	9.17224e-61
NZ_CP010812.1\|WP_046127141.1\|3664252_3664855_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	6.67552e-126
NZ_CP010812.1\|WP_001233674.1\|3663751_3664183_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	6.80534e-67
NZ_CP010812.1\|WP_046127145.1\|3674285_3675140_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.07934e-153

>NZ_CP010812.1|WP_001230176.1|3669716_3670844_+|membrane-bound-lytic-murein-transglycosylase-MltC
MRKLVLCITALLLSGCSREFIEKIYDVDYEPTNRFAKNLAELPGQFQKDTAALDALINSFSGNIEKRWGRRELKIAGKNNYVKYIDNYLSRSEVNFTEGRIIVETVSPIDPKAHLRNAIITTLLTPDDPAHVDLFSSKDIELKGQPFLYQQVLDQDGQPIQWSWRANRYADYLIANHLKVKQVDFKKAYYVEIPMVKDQIDIRGYKYASIVRKASRKYDIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFKLVKNRSGEPSPEYLFNPENNIDTGTAYFYILKNRYLKEVRHPTSLEYSMISAYNGGTGGVLSTFSSDRQRAMRDLNALQPNQVYWALTKKHPNAEARRYLEKVTKFKKEFNAG
>NZ_CP010812.1|WP_000124738.1|3669342_3669615_+|oxidative-damage-protection-protein
MARTVFCTRLQKEADGLDFQLYPGELGKRIFDNICKEAWAQWQTKQTMLINEKKLNMMDPEHRKLLEQEMVNFLFEGKEVHIEGYTPPAK
>NZ_CP010812.1|WP_046127379.1|3668267_3669329_+|A/G-specific-adenine-glycosylase
MTPFAQAILTWYDAYGRKNLPWQQNKNAYRVWLSEIMLQQTQVATVIPYFERFLERFPTVHALAAAPQDEVLHFWTGLGYYARARNLHKAAKMVVSEYGGEFPTDLEQMNALPGVGRSTAAAVLSSVYKKPHAILDGNVKRTLARCFAVEGWPGQKSVENQLWHYAEMHTPSVDVDKYNQAMMDMGAMICTRSKPKCSLCPVESFCLAKQQGNPQEYPGKKPKTDKPVKATWFVMLYHDNAVWLEQRPQSGIWGGLYCFPQSEIANIQTTIDQRAIGDSTITSQKTLIAFRHTFSHYHLDITPILLQLSRKPDIVMEGSKGLWYNLSQPDEIGLAAPVKQLLHSLPFDIDSHI
>NZ_CP010812.1|WP_046127143.1|3667308_3668028_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVITQEYTEDGKVLRRIRSFVRREGRLTKGQEAAMKECWPTMGIDYQPELLDWQQVFGNDNPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASAREAGVTNLRVMCHDAVEVFAHMIPDNSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLIIGSGVFHMATDWQNYAEHMIEVMNQAPGFANLATDGDYIPRPDERPLTKFEQRGHRLGHGVWDIKYQRTA
>NZ_CP010812.1|WP_000805056.1|3666277_3667198_-|glutaminase-B
MKPTAEILASIIEEVRPLTGQGKVADYIPALAKVPSEKLGIAVFTNQGEVITAGDAQEGFSIQSISKVLSLTLAMGLYQPDELWSRVGKEPSGQAFNSLIQLEMEHGIPRNPFINAGAIVVCDMLQSRLSAPRQRLLEFVRQLSGEPLIAYDKVVAASEMMHSDRNAAIAYLMRSFGNFHNEVIPVLHNYFHACALKMSCVELAKTFSYLANKGVSVVTGETVITPTQSKQTNALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPALDQSGNSLAGTRALELLAQRIGRSIF
>NZ_CP010812.1|WP_046127142.1|3664848_3666024_+|radical-SAM-family-heme-chaperone-HemW
MLTPPPLSLYIHIPWCVQKCPYCDFNSHAQKGDIPEQEYLDALLEDLDRDIERYQLKGDPRLLHSIFIGGGTPSLISAEGIARLLQGVAKRIAFKPDIEITMEANPGTIEAQRFAGYRTAGVTRISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPEQALADLDQAIALNPPHLSWYQLTIEPNTLFYSKPPKLPDEDALWDIFELGHQKLSDAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLAALNNLAKAYLDSEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWAISEGYLSEDDQHWQITEKGKLFLNDLLEAFMADEEE
>NZ_CP010812.1|WP_046127141.1|3664252_3664855_+|XTP/dITP-diphosphatase
MKKILLATGNQGKVREMADLLSDFGFDVVAQSEFNVPEAAETGTTFIENAIIKARHAAQITGLPAIADDSGLEVDYLNGAPGIYSARYAGEHASDGDNLNKLLVAMQDVPDDQRSARFHCVLVLMRHADDPTPIVCHGKWEGKILTAPHGSNGFGYDPIFWVPEENCASAELEPGRKKQLSHRGKALQKLFKAIEEQRTC
>NZ_CP010812.1|WP_001233674.1|3663751_3664183_+|DUF4426-domain-containing-protein
MRKWMMSLLLTLLALPASAEQQKTIKDIEVHYSAFNSTFLTPKVASSYQLTRNGYTAILNISVLDRASLGKPATEAKLTGHAKNLIGNLRELSFKQVKEGNAIYYLAEVPISNEEMLTFDIDVDAGLKGAGKLTFSQKFYTEQ
>NZ_CP010812.1|WP_000741915.1|3663415_3663706_+|YggU-family-protein
MAAVWREGDDLLLRLYIQPKASRDSIVGLHGEELKVAITAPPIDGKANAHLSKYLAKLCKVAKGSVVIEKGELGRHKQVRILQPSQIPAEITALIE
>NZ_CP010812.1|WP_001087261.1|3662858_3663416_+|YggT-family-protein
MNSLSFLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLATIVFAYVLCVLKFMALVLIASSGSVSFSADFLFLGLLSLIKAAGGLLFWVLLIRAILSWVSQGRSPIEYVFHQLTEPMLAPIRRIIPVMGGFDLSILVLFIVLQFANFLMGDVIGPIWYQL
>NZ_CP010812.1|WP_046127144.1|3671611_3673237_+|methyl-accepting-chemotaxis-protein
MKLKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFAIQAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDQDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVDALESVSSMSHQIATAAAEQTQVSDDISRRINMIEESGSKLSRVVIESHNSTQTLTKLARELEQWAAHFEVTR
>NZ_CP010812.1|WP_046127145.1|3674285_3675140_-|co-chaperone-DjlA
MHIFGKILGAFFGFLFGGPFGAIFGIFLGHQFDKARRLNQAGFQSGTFGAGPSQAERQEEFFKSAFSVMGHVAKAKGQVTKEEIQLATIMMDRMNLNLEQKRAAQDAFRDGKESDFPLEQVLERVKIATGGRFDLLQFFLELQVSSAFADGDVHPSERQVLHRIARGLGFSSEQLERRLRMQEAAFRFQQGGGFGGSQQQSHSGQQWQQPSSRHQLADAYEVLGVSESASAQEVKRAYRKLMNEHHPDKLMAKGLPPEMMNVAKEKSQQIQHAYELIRKEKGIK
>NZ_CP010812.1|WP_046127146.1|3675298_3677644_+|LPS-assembly-protein-LptD
MSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLAEDQLHTELGARWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSHIDSGIGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTEDKNRSNLPYRLMPQLSYNYYAPETMKYLDLDLVSHISRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVARVIPEIRSVAGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTELQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYLDSKLNPSNDNSKDKESSYSAWAVEMDFNFADYLFYHGGIQYDINGQAVQLGNSTLEYRFAGGYLQTNYRYVDKDYICSVRGCSSDGYSSLTKDGISQAGLLASYQLTRKWSASGQYYYDLTTDEALEWLANLTYTSDCWYVGFSYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN
>NZ_CP010812.1|WP_000780521.1|3677696_3678992_+|peptidylprolyl-isomerase-SurA
MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQPLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASVAQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEVLKDEKDEQ
>NZ_CP010812.1|WP_000095776.1|3678981_3679974_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MSSKRIIVTAGEPAGIGPDLVLALSAQDWPHQLVVCADKALLAQRAVQLGIQVKLLDYQRDNPVQAQQAGTLLVEHIPLAEPVVAGQLNPANGHYVLKTLERAAKGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSKTPLVVMMLATEGLRTALVTTHLPLAEVPQAITCERLEQIVHILHKDLVEKFAIAEPKIYVCGLNPHAGEDGVLGMEEIETITPTLQRLREQYGMQLVGPLPADTIFSEKYLQQADAVLGMYHDQVLPVLKYKGFGRSVNITLGLPFIRTSVDHGTALDLAGTGQADAGSFWTALAYAIELVDKKAQ
>NZ_CP010812.1|WP_001243262.1|3679987_3680803_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MRNDVHLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWLDATHKTHA
>NZ_CP010812.1|WP_046127147.1|3680874_3681255_+|Co2+/Mg2+-efflux-protein-ApaG
MDVSQPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLMIDEQGESFTVEIEPFRLAVPHVLN
>NZ_CP010812.1|WP_000035028.1|3681265_3682075_+|symmetrical-bis(5'-nucleosyl)-tetraphosphatase
MANYIVGDIQGCFDELQQLLKQAEFNSQLDTLWFAGDLVARGPKSLETLRFVYQLGDAARVVLGNHDLHLLSVALGHHPAKRRDQTQAILDAPDAAPLLDWLRQQPLLAEHQEFVLCHAGISPQWDLATARQAAQEVESVLRSPEWSTLIEQMYSDQPDAWHPTLQGIDRLRYIVNAFTRMRFCFPDGRLDMQCKLPPKEVTDGSLLPWFQLPQRIALEKTVIFGHWAALEGYVSETVIGLDTGCVWGGTLTMLRWEDKHYFSQAALPA
>NZ_CP010812.1|WP_000973544.1|3682224_3682722_-|type-3-dihydrofolate-reductase
MMISMIAAMADQRIIGKDNQMPWHLPADFAWFKRCTLGKPVVMGRKTYQSIGRPLPGRHNIVISRDVSLQIEGVDVVTSIEAALAKAGEVDEVMIIGGGSLYAACLPMAHKLYITEIHAKLEGDTQFPEWGSDWLERFREHYPADEKNAYGMDFVIFERQYPLPT
>NZ_CP010812.1|WP_000954087.1|3682734_3683208_-|threonine/serine-exporter-family-protein
MLSWDLFFGLLNDMFFAAIPAVGFALVFNVPVPALKYCALGGALGHGSRYLMMHFGVPIEWASFFAATLVGMVGVYWSRRFLAHPKVFTVAALIPMVPGVFAFKAMIALVEINHVGFSPELMEALLENFLKAMFIIAGLAVGLAVPGLLFYRRKPII

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010812_1	1.1\|3671126\|39\|NZ_CP010812\|PILER-CR	3671126-3671164	39	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35428-35466	4	0.897
NZ_CP010812_1	1.1\|3671126\|39\|NZ_CP010812\|PILER-CR	3671126-3671164	39	NC_049942	Escherichia phage JLK-2012, complete sequence	23522-23560	5	0.872

1. spacer 1.1|3671126|39|NZ_CP010812|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.897

agtaggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
agtaggtcaccagttcgattccggtagccggcaccaatc	Protospacer
********.***************.*********** *.

2. spacer 1.1|3671126|39|NZ_CP010812|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 5, identity: 0.872

agtaggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
atcaggtcgccagttcgattccggtagccggcaccatat	Protospacer
* .*********************.***********. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

300211 : 311363

Vibrio_phage(50.0%)

holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080341636.1\|300211_300523_+\|holin	phage holin family protein	R9TR41	Vibrio_phage	1.4e-19	46.3
WP_000460722.1\|300591_301110_+	hypothetical protein	Q6VT55	Vibrio_phage	7.2e-61	63.7
WP_000359320.1\|301119_301278_+	hypothetical protein	NA	NA	NA	NA
WP_001007094.1\|301282_301459_+	hypothetical protein	NA	NA	NA	NA
WP_000835318.1\|301553_301775_+	hypothetical protein	NA	NA	NA	NA
WP_046126019.1\|301777_302356_+	hypothetical protein	A0A1V0E8A2	Vibrio_phage	1.8e-23	37.0
WP_032481741.1\|302367_302628_+	hypothetical protein	NA	NA	NA	NA
WP_001091870.1\|302745_303750_+	hypothetical protein	A0A2L1IV47	Escherichia_phage	2.0e-27	30.0
WP_044128060.1\|303811_305017_+	DUF4043 family protein	A0A088CC32	Shigella_phage	3.0e-134	58.0
WP_000149718.1\|305031_305412_+	hypothetical protein	M4MCI2	Vibrio_phage	4.7e-09	32.0
WP_000149035.1\|305469_305934_+	hypothetical protein	A0A1I9KFH0	Aeromonas_phage	1.2e-27	57.7
WP_000450573.1\|305936_306536_+	hypothetical protein	NA	NA	NA	NA
WP_000117295.1\|306535_307165_+	hypothetical protein	A0A1I9KFD0	Aeromonas_phage	5.0e-24	33.3
WP_046126020.1\|307179_309684_+	right-handed parallel beta-helix repeat-containing protein	A0A240EWW2	Vibrio_phage	3.0e-19	31.2
WP_001905928.1\|309755_311363_+	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	3.2e-131	45.8

DBSCAN-SWA_2

1355281 : 1369994

Vibrio_phage(50.0%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046126406.1\|1355281_1357513_-	N-6 DNA methylase	A0A1B1IUC6	uncultured_Mediterranean_phage	3.7e-13	22.4
WP_046126407.1\|1357509_1358589_-	DNA adenine methylase	M1HGA9	Paramecium_bursaria_Chlorella_virus	3.8e-27	29.6
WP_080341744.1\|1359391_1360615_-	DUF3596 domain-containing protein	R9TMP3	Vibrio_phage	7.2e-184	76.4
WP_000083581.1\|1360590_1360779_-	hypothetical protein	NA	NA	NA	NA
WP_001899820.1\|1360784_1361048_-	hypothetical protein	A0A1V0E8D5	Vibrio_phage	2.0e-06	43.9
WP_000196481.1\|1361299_1362013_-	helix-turn-helix domain-containing protein	R9TNM0	Vibrio_phage	3.7e-116	85.3
WP_076007605.1\|1362109_1362283_+	hypothetical protein	R9TPV3	Vibrio_phage	2.2e-22	84.2
WP_000532438.1\|1362570_1362735_+	hypothetical protein	R9TR53	Vibrio_phage	5.5e-07	56.0
WP_001905915.1\|1362903_1363872_+	helix-turn-helix domain-containing protein	R9TPU9	Vibrio_phage	9.3e-94	57.1
WP_046126408.1\|1363935_1364754_+	hypothetical protein	NA	NA	NA	NA
WP_080341745.1\|1364867_1365713_+	hypothetical protein	A0A2L1IV66	Escherichia_phage	1.7e-14	25.7
WP_046126409.1\|1365705_1367403_+\|terminase	terminase	B0FEF1	Escherichia_phage	1.1e-217	65.8
WP_044125582.1\|1367399_1369487_+	hypothetical protein	A0A088CE71	Shigella_phage	3.1e-203	58.3
WP_000066470.1\|1369781_1369994_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.6e-20	69.1

DBSCAN-SWA_3

1515990 : 1523183

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046126449.1\|1515990_1517205_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-32	30.5
WP_000331703.1\|1517241_1517625_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000301571.1\|1517685_1518009_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_001105750.1\|1518057_1518573_+	co-chaperone HscB	NA	NA	NA	NA
WP_001196545.1\|1518596_1520447_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.5e-105	40.9
WP_001124187.1\|1520460_1520799_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_000872176.1\|1520847_1521042_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_000107237.1\|1521261_1522551_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.7e-34	34.3
WP_001162850.1\|1522754_1523183_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4

DBSCAN-SWA_4

1676902 : 1714350

Vibrio_phage(89.36%)

transposase,tail,plate,head,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046126509.1\|1676902_1677232_+	DUF3486 family protein	M4MCT3	Vibrio_phage	1.2e-32	67.3
WP_000121676.1\|1677380_1678124_-	helix-turn-helix transcriptional regulator	A0A2I7S9A5	Vibrio_phage	4.9e-103	74.3
WP_000442472.1\|1678298_1678523_+	helix-turn-helix domain-containing protein	A0A2I7S995	Vibrio_phage	9.1e-29	83.8
WP_046126510.1\|1678570_1680535_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2I7S9A8	Vibrio_phage	4.1e-282	71.7
WP_000800334.1\|1680561_1681506_+	AAA family ATPase	M4M9P4	Vibrio_phage	1.1e-126	73.7
WP_046126511.1\|1681513_1681738_+	hypothetical protein	NA	NA	NA	NA
WP_080341764.1\|1681747_1682317_+	hypothetical protein	NA	NA	NA	NA
WP_001032750.1\|1682326_1682701_+	hypothetical protein	M4MB90	Vibrio_phage	2.9e-27	59.0
WP_046126512.1\|1682666_1682864_+	hypothetical protein	NA	NA	NA	NA
WP_001192101.1\|1682850_1683465_+	DUF3164 family protein	M4MHH7	Vibrio_phage	2.6e-86	79.6
WP_046126513.1\|1683474_1683747_+	hypothetical protein	A0A2I7S9G2	Vibrio_phage	1.3e-21	61.2
WP_046126514.1\|1683739_1683976_+	hypothetical protein	M4MCS5	Vibrio_phage	1.2e-18	59.7
WP_046126515.1\|1683959_1684157_+	hypothetical protein	NA	NA	NA	NA
WP_032472795.1\|1684153_1684375_+	hypothetical protein	NA	NA	NA	NA
WP_046126516.1\|1684371_1684641_+	DUF3850 domain-containing protein	C1KFE1	Lactobacillus_virus	8.5e-13	47.6
WP_046126517.1\|1684637_1685171_+	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	1.3e-28	40.4
WP_046126518.1\|1685167_1685458_+	hypothetical protein	NA	NA	NA	NA
WP_000466683.1\|1685538_1685772_+	hypothetical protein	M4M9N5	Vibrio_phage	8.3e-25	67.5
WP_046126519.1\|1685986_1686532_+	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	1.2e-53	58.2
WP_046126520.1\|1686521_1686986_+	hypothetical protein	A0A2I7S9E3	Vibrio_phage	6.1e-19	37.3
WP_001029055.1\|1687063_1687480_+	hypothetical protein	M4MHG9	Vibrio_phage	6.3e-31	50.0
WP_046126521.1\|1687567_1687990_+	hypothetical protein	M4M9N1	Vibrio_phage	1.9e-67	80.7
WP_046126522.1\|1687999_1688290_+	hypothetical protein	M1PJ80	Vibrio_phage	3.7e-14	52.2
WP_046126523.1\|1688265_1688862_+	hypothetical protein	M4MB79	Vibrio_phage	1.2e-48	58.6
WP_046126524.1\|1688858_1689089_+	TraR/DksA C4-type zinc finger protein	M4MHG5	Vibrio_phage	9.7e-18	60.5
WP_000230647.1\|1689088_1689391_+	DUF2730 family protein	M4M9P7	Vibrio_phage	3.6e-20	51.5
WP_000008606.1\|1689399_1689690_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	3.9e-40	82.3
WP_046126525.1\|1689701_1690268_+	DUF3486 family protein	M4MCR3	Vibrio_phage	1.4e-46	55.6
WP_046126526.1\|1690268_1691834_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.2e-228	77.2
WP_046126527.1\|1691830_1693390_+	DUF935 domain-containing protein	M4M9P3	Vibrio_phage	2.5e-226	75.1
WP_046126528.1\|1693382_1694156_+	hypothetical protein	M1PVV7	Vibrio_phage	4.0e-116	75.9
WP_046126529.1\|1694167_1694416_+	hypothetical protein	NA	NA	NA	NA
WP_046126530.1\|1694412_1694925_+	hypothetical protein	A0A0F6N5P8	Escherichia_phage	3.1e-32	45.6
WP_046126531.1\|1695313_1696270_+\|protease	Mu phage protease GpI	M1Q578	Vibrio_phage	2.5e-99	60.6
WP_046126532.1\|1696272_1697172_+\|head	Mu-like prophage major head subunit gpT family protein	M4MB71	Vibrio_phage	7.2e-149	83.1
WP_046126533.1\|1697260_1697836_+	hypothetical protein	M4M9M3	Vibrio_phage	8.1e-21	53.5
WP_001029275.1\|1697841_1698276_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	3.3e-67	88.2
WP_046126534.1\|1698275_1698818_+	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	2.1e-74	75.4
WP_046126535.1\|1698814_1699414_+	hypothetical protein	M4MHF0	Vibrio_phage	2.2e-69	61.7
WP_000437436.1\|1699427_1699628_+	DUF2635 domain-containing protein	A0A2I7S9K4	Vibrio_phage	2.6e-06	43.5
WP_046126536.1\|1699630_1701115_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	2.1e-209	72.9
WP_000024434.1\|1701129_1701483_+\|tail	phage tail tube protein	A0A2I7S9D5	Vibrio_phage	8.7e-42	68.4
WP_000996596.1\|1701482_1701827_+\|tail	phage tail assembly protein	M4MB64	Vibrio_phage	4.8e-45	81.4
WP_046126537.1\|1701952_1703725_+\|tail	phage tail length tape measure protein	M4MHE6	Vibrio_phage	3.1e-204	65.8
WP_046126538.1\|1703736_1705056_+	DNA circularization N-terminal domain-containing protein	A0A2I7S9E8	Vibrio_phage	3.6e-165	67.4
WP_046126539.1\|1705048_1706125_+\|tail	phage tail protein	M4M9L5	Vibrio_phage	7.0e-159	75.3
WP_080341765.1\|1706121_1706736_+\|plate	phage baseplate assembly protein V	M4MCP6	Vibrio_phage	8.8e-74	70.2
WP_000095018.1\|1706738_1707188_+	phage GP46 family protein	M4MB61	Vibrio_phage	1.1e-54	73.6
WP_046126540.1\|1707177_1708245_+\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	5.5e-148	72.4
WP_046126541.1\|1708229_1708817_+	DUF2313 domain-containing protein	A0A2I7S9L6	Vibrio_phage	2.1e-93	79.5
WP_046126542.1\|1708816_1710151_+	hypothetical protein	H9C145	Vibrio_phage	2.8e-80	47.5
WP_046126543.1\|1710150_1710672_+	hypothetical protein	H9C146	Vibrio_phage	1.6e-28	55.4
WP_001891514.1\|1711157_1711658_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_000756756.1\|1711970_1713089_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.6e-25	28.4
WP_046126544.1\|1713108_1714350_+	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HZW8	Acanthocystis_turfacea_Chlorella_virus	1.2e-24	27.5

DBSCAN-SWA_5

3147725 : 3154343

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000864130.1\|3147725_3148196_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7
WP_001122865.1\|3148460_3149570_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
WP_001959295.1\|3149610_3150264_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.9e-32	38.2
WP_046126994.1\|3150268_3151372_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	9.1e-45	33.1
WP_000543544.1\|3151397_3151847_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_046126995.1\|3151947_3153198_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.9e-100	49.5
WP_000210573.1\|3153209_3154343_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-64	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage