CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017295	Streptococcus gordonii strain IE35, complete genome	4 crisprs	cas3,WYL,csm6,csn2,cas2,cas1,cas9,DinG,csa3,DEDDh	0	10	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017295_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017295_1

1619972-1620863

TypeII

Consensus_repeat	Method
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CRISPRCasFinder
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CRT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	PILER-CR

13 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP017295_1

>merge|NZ_CP017295|1|1619972-1620863|CRISPRCasFinder,CRT,PILER-CR
CTTAATTACTCACTTAAATCTTGAGAGTACAAAAACCAGGGGCGATAAAATGCCCACGTAGGGCGTTGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACTGAGGCGTAACGTCAATAGGTTGTGACTGAGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACCGCATCTCATCCTTGTGACTCTCTACGAATGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACATAAAGCTCAAGAAGTCAACTCTAATAGTGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACACCCGAGCAATTGAAGGTTATCCACAATCAGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACATGATGTAAAATAATGGCATTTTCTATAAGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACTAGCCTGAAAGAGAAAAGACACTTTAAAGGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACTATCCATTTTAAGCGACTTGATGCGCTCTTGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACTGGTAAAAGATATTTTTGCAGTTGTGATAGGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACCGTTTGATTGGAGGTGAGGATGTGCGAAAAGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACCAACAGAAGAACACAACAACACAGGATATGGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACCAATGCGATAGATTGATATTCCCTGATTTGGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAACCAAGCTCGTTTCTTGTGTGGTGTCCTATTTGTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC

>NZ_CP017295|1|1|1619972-1620863|CRISPRCasFinder
CTTAATTACTCACTTAAATCTTGAGAGTACAAAAAC	CAGGGGCGATAAAATGCCCACGTAGGGCGTT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TGAGGCGTAACGTCAATAGGTTGTGACTGA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CGCATCTCATCCTTGTGACTCTCTACGAAT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	ATAAAGCTCAAGAAGTCAACTCTAATAGT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	ACCCGAGCAATTGAAGGTTATCCACAATCA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	ATGATGTAAAATAATGGCATTTTCTATAA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TAGCCTGAAAGAGAAAAGACACTTTAAAG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TATCCATTTTAAGCGACTTGATGCGCTCTT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TGGTAAAAGATATTTTTGCAGTTGTGATAG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CGTTTGATTGGAGGTGAGGATGTGCGAAAA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CAACAGAAGAACACAACAACACAGGATATG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CAATGCGATAGATTGATATTCCCTGATTTG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CAAGCTCGTTTCTTGTGTGGTGTCCTATTT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC

>NZ_CP017295|1|1|1619972-1620863|CRT
CTTAATTACTCACTTAAATCTTGAGAGTACAAAAAC	CAGGGGCGATAAAATGCCCACGTAGGGCGTT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TGAGGCGTAACGTCAATAGGTTGTGACTGA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CGCATCTCATCCTTGTGACTCTCTACGAAT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	ATAAAGCTCAAGAAGTCAACTCTAATAGT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	ACCCGAGCAATTGAAGGTTATCCACAATCA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	ATGATGTAAAATAATGGCATTTTCTATAA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TAGCCTGAAAGAGAAAAGACACTTTAAAG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TATCCATTTTAAGCGACTTGATGCGCTCTT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TGGTAAAAGATATTTTTGCAGTTGTGATAG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CGTTTGATTGGAGGTGAGGATGTGCGAAAA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CAACAGAAGAACACAACAACACAGGATATG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CAATGCGATAGATTGATATTCCCTGATTTG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CAAGCTCGTTTCTTGTGTGGTGTCCTATTT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC

>NZ_CP017295|1|1|1620105-1620863|PILER-CR
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CGCATCTCATCCTTGTGACTCTCTACGAAT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	ATAAAGCTCAAGAAGTCAACTCTAATAGT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	ACCCGAGCAATTGAAGGTTATCCACAATCA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	ATGATGTAAAATAATGGCATTTTCTATAA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TAGCCTGAAAGAGAAAAGACACTTTAAAG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TATCCATTTTAAGCGACTTGATGCGCTCTT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	TGGTAAAAGATATTTTTGCAGTTGTGATAG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CGTTTGATTGGAGGTGAGGATGTGCGAAAA
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CAACAGAAGAACACAACAACACAGGATATG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CAATGCGATAGATTGATATTCCCTGATTTG
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC	CAAGCTCGTTTCTTGTGTGGTGTCCTATTT
GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017295.1\|WP_008809321.1\|1627196_1627544_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP017295.1\|WP_001268300.1\|1621972_1622296_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP017295.1\|WP_046165413.1\|1608459_1609743_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP017295.1\|WP_046165409.1\|1613644_1614712_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NZ_CP017295.1\|WP_046165401.1\|1623380_1626791_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_CP017295.1\|WP_046165410.1\|1612389_1613556_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NZ_CP017295.1\|WP_046165396.1\|1630617_1632915_-\|type-I-pullulanase	unknown	unknown	gnl\|CDD\|273975
NZ_CP017295.1\|WP_046165399.1\|1627982_1628357_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|184575
NZ_CP017295.1\|WP_046165403.1\|1622300_1623209_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP017295.1\|WP_046165407.1\|1615636_1616314_-\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235036
NZ_CP017295.1\|WP_008809305.1\|1610910_1611249_-\|YlbF/YmcA-family-competence-regulator	unknown	unknown	gnl\|CDD\|237467
NZ_CP017295.1\|WP_046165411.1\|1611266_1612373_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP017295.1\|WP_046165404.1\|1620932_1621976_-\|CRISPR-associated-protein-Cas7	csn2	cd12217_csn2_CAS-II-A	gnl\|CDD\|213410
NZ_CP017295.1\|WP_046165406.1\|1616310_1617474_-\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NZ_CP017295.1\|WP_046165397.1\|1629044_1630427_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_CP017295.1\|WP_046165400.1\|1627659_1627986_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|172717
NZ_CP017295.1\|WP_046165412.1\|1609880_1610795_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133427
NZ_CP017295.1\|WP_046165398.1\|1628353_1628620_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|168880
NZ_CP017295.1\|WP_046165405.1\|1617714_1619913_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP017295.1\|WP_046165408.1\|1614789_1615647_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703

Protein	Function_ID	Function_description	E-value
NZ_CP017295.1\|WP_008809321.1\|1627196_1627544_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.40737e-70
NZ_CP017295.1\|WP_001268300.1\|1621972_1622296_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	8.4077e-28
NZ_CP017295.1\|WP_046165413.1\|1608459_1609743_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP017295.1\|WP_046165409.1\|1613644_1614712_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	1.31305e-179
NZ_CP017295.1\|WP_046165401.1\|1623380_1626791_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_CP017295.1\|WP_046165410.1\|1612389_1613556_-\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_CP017295.1\|WP_046165396.1\|1630617_1632915_-\|type-I-pullulanase	gnl\|CDD\|273975	TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.	0
NZ_CP017295.1\|WP_046165399.1\|1627982_1628357_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|184575	PRK14221, PRK14221, fluoride efflux transporter CrcB.	7.20815e-58
NZ_CP017295.1\|WP_046165403.1\|1622300_1623209_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	8.06739e-125
NZ_CP017295.1\|WP_046165407.1\|1615636_1616314_-\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|235036	PRK02412, aroD, type I 3-dehydroquinate dehydratase.	1.69479e-115
NZ_CP017295.1\|WP_008809305.1\|1610910_1611249_-\|YlbF/YmcA-family-competence-regulator	gnl\|CDD\|237467	PRK13676, PRK13676, YlbF/YmcA family competence regulator.	2.99013e-43
NZ_CP017295.1\|WP_046165411.1\|1611266_1612373_-\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	3.70671e-161
NZ_CP017295.1\|WP_046165404.1\|1620932_1621976_-\|CRISPR-associated-protein-Cas7	gnl\|CDD\|213410	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. This family of Csn2 proteins includes Stu0660, the proteins are larger than other (canonical) Csn2 proteins as they have an additional alpha-helical C-terminal domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	4.97004e-139
NZ_CP017295.1\|WP_046165406.1\|1616310_1617474_-\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	1.87582e-141
NZ_CP017295.1\|WP_046165397.1\|1629044_1630427_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP017295.1\|WP_046165400.1\|1627659_1627986_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|172717	PRK14229, PRK14229, fluoride efflux transporter CrcB.	5.08899e-56
NZ_CP017295.1\|WP_046165412.1\|1609880_1610795_-\|L-lactate-dehydrogenase	gnl\|CDD\|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	1.92981e-144
NZ_CP017295.1\|WP_046165398.1\|1628353_1628620_-\|chorismate-mutase	gnl\|CDD\|168880	PRK07248, PRK07248, chorismate mutase.	3.93901e-41
NZ_CP017295.1\|WP_046165405.1\|1617714_1619913_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	3.27001e-154
NZ_CP017295.1\|WP_046165408.1\|1614789_1615647_-\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	2.72365e-112

>NZ_CP017295.1|WP_046165405.1|1617714_1619913_+|LTA-synthase-family-protein
MKKMTRKLLNFMSTRLGFVLTLLCFYWLKTMWAYTVDFNLDIQGFYQAFLAFVNPIPLGLLFIGLALYFKRSAIFYGFSIFVYILLFIWLFSNAVYYREFSDFVTVNTMMASSSVSAGLGEAALGLFRPWDIIYLIDFPILGYLMYKKFIRVDHRPFNKRASFAITALSTMLFSANLFLAEIDRPQLLTRGFSNYYVVRALGLPAFLGYSGNQTYQANKERSKASAEDLKPVEEYIQNHYAEPNKDYFGIAKGRNVIYVHLESFQQFLIDYKLQADGKAYEVTPFLNSLYHSNSTLAFSNVFNQVKAGKTSDAETMIETGLFGLNQGSFMVNYGGTNTQQAAPFILSKNGGYTSAVFHGNAGSFWNRNTAYKQWGYNYFFDASYFTKQDDTNSFQYGLNDKIMLKDSIKYLERLQQPFYVKYITVSNHYPYTTSLIGDEIGFPLAKTKDETINGYFATANYLDSSVKALFDYLKKSGLYDNSIIVLYGDHFGISQTRNPNLAPLVGKTSETWSNYDNAMMQRVPYMVVIPGMDKGKIIDTYGGQVDMLPTLEHLLGIDSKNYLQVGQDMLSTQHQQITAFRSSNNFVTPKYTSFNGRTYYTQTGEEITNPDETIKKELDDIRNAANTQLKISDAIQTGDLIRFYEGNDLGKVDVKKYSYNHSFKALKKIEEEKGDQSTSLYSQRKGESTIDLFDAPSYRALHPEQFESTSSSEDSSESSSDSSSSSSSSSKQ
>NZ_CP017295.1|WP_046165406.1|1616310_1617474_-|class-I-SAM-dependent-rRNA-methyltransferase
MKKLTVSRYKEEKIRQGALLLEKEDFPELSFDHQAVELVSSQGKFLGCGYISKQNKGLGWLVSKQKVDFDRDFFISLFEKAKEKRRFYRLAEDITAYRLFNQEGDGFAGLTVDQYEDYALFSWYNPFVFSLKEEILQAFQEVFPELMGAYEKIRFKGLDYESAHVYGAEAPEVFTVLENGVAYQVFLNDGLMTGIFLDQHEVRASLVDGLATGKSLLNMFSYTAAFSVAAAMGGASQTTSVDLAKRSRELSEAHFQVNGLTLDNHKFVVMDVFDYFKYAKRHGLSYDVIVLDPPSFARNKKQTFSVAKDYHKLIKESLEILNPKGVLIASTNASNVTRAKFKKEIEKGFAGKHHRYIKEYGLPADFSYNKKDESSNYLKVFTIKVEE
>NZ_CP017295.1|WP_046165407.1|1615636_1616314_-|type-I-3-dehydroquinate-dehydratase
MKLVVSVTPRNLEEAQQIDAQRFVDADLIEWRADFLEKEEILKVAPAIFEKFAGRELIFTLRTKDEGGHIQLSDDEYVEMIKKVTQLYQPDYVDFEYFSHKDKIDEMLEFPNLVLSYHNFEETPENMMEILSELTSLTPKAVKVSVMANSGQDVLDLMNYTRGFKTLNPEQEYVTISMGRVGRISRIASDLTGSSWSFASLDEATAPGQISLSSMKKIRDILNEN
>NZ_CP017295.1|WP_046165408.1|1614789_1615647_-|shikimate-dehydrogenase
MRIDGHTRLAAVIAKPIKHSISPFIHNMAYDLTDTNAVYLAFEVDRENLEQAVENIRLHQMLGANISMPYKQEVITYLDELDESALLIGAVNTVVNQNGRLIGYNTDGLGFFRSLSNFHIKGKNLTILGAGGAASAIIGQAVLDGVEKVCVFDLRDRLAGHQEKIEQMSRRLGHPIQLLAVEDLAALSDTVNQSDLFINATGLGMDGKSLPIPSDFAFPKGLLVADMTYCPAETPFLRLAREQGLQTVNGLGMLLYQAEKAFELMTGKIMPSEEIKKALLEKLEI
>NZ_CP017295.1|WP_046165409.1|1613644_1614712_-|3-dehydroquinate-synthase
MKLNVNLPHHPYDIIIENGALSQVGSWLSQLWQPQKLVIITDNRVARLYAEKVKLSLEAAGFKVFTFDFLEGEASKNLTTVNKAYEFLAKVGLTRSDGIVALGGGVVGDLAGFVASTYMRGIHFVQIPTSLTAQVDSSIGGKTGVNTPWAKNMVGTFTQPDGVLMDPQVLQTLGKRELIEGMGEVVKYGLIEDKELWDELSEMDGSPESILEHAESIIYHSCDVKRKIVVEDELDNGIRLYLNFGHTIGHAIEATAGYGQVMHGEAVAIGMVQVSRVAEKQGLMPAGITEDIIHMCQKFGLPVDYQTWDENALYQALTHDKKGRGNSIKLVLVPELGSASIHQIPLEEMKEFLKK
>NZ_CP017295.1|WP_046165410.1|1612389_1613556_-|chorismate-synthase
MRYLTAGESHGPRLTAIIEGVPAGLPLSADYINAELKRRQGGYGRGARMKIESDQVEITSGVRHGLTMGGPITLNVMNLDHQKWLEIMSAADVDEKKKGLRKITKPRPGHADLVGGMKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLEEIGVEVASHIVTFGGIDIDVPDQLTVTEIKERAAQSEVSIVNPEREEEIKAYIDQIKKDGDTIGGVIETVVGGVPVGLGSYVQWDKKLDAKIAQGVVSINAFKGVEFGVGFEAGRLKGSQVMDEILWSEEDGFTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYKPLMSVDIGTHKPYKATVERSDPTALPAAGVVMESVVATVLATEVLEKFSSDNLEELKDAVARHREFIKNF
>NZ_CP017295.1|WP_046165411.1|1611266_1612373_-|prephenate-dehydrogenase
MERKTVYIAGLGLIGASLALGIRRAHPEIEILGYNRSEESRRVALERGMVDRVTDDFATFAPLADVIILAVPIKQTIAFIKDLADLNLKENVIISDAGSTKAEIVATAEKYLQNKPVRFVGAHPMAGSHKTGAKAAHVTLFENAYYIFTPSSLTKPGTLEEMKDLLSGLQARFIQVDAVEHDRVTSQISHFPHILASSLMEQTAAYSQEHELTQSFAAGGFRDMTRIAESEPGMWTSILLTNPQAILERLEDFKNQLDKVAAAIEAKDETAIWEFFNRGRQSRKQMEIHKRAGVDSFYDLFVEVPDEEGAILSVLELLRGISVVNIRINEENREDTHGILQITFKNRQDLEKSAKIVRENTRYQVFLN
>NZ_CP017295.1|WP_008809305.1|1610910_1611249_-|YlbF/YmcA-family-competence-regulator
MSNIYDLANELNRTFRELPEYKAVLESKAAIDADSEAKSLFDDYIAFQGKIQQLMQTGQMPTPELQEEMKSFGEKIQANAIVTEFFTKQQQLSVYLSDIERIVFEPIQDLMK
>NZ_CP017295.1|WP_046165412.1|1609880_1610795_-|L-lactate-dehydrogenase
MSRKVAIIGMGNVGAAVAHGLIAQGAFDDYVLIDTNEAKVKADALDFQDAAANLNHHANITVNSYEALADADIIISALGNIKLQDNPNADRFVELPFTSKEVIEVSKKIKEVGFKGILIAITNPVDVVTSLYQHYTGLPKERVIGTGTLLDTARMKRAVGVRFGVDPRSVYGYNLGEHGNSQFTAWSQVRVKGQPISKLTSEEVLEEIATEAMRGGHTVFYGKKYTSYGIASAAIRLALAVISDAHEELPVTNYYAPLDTYLSYPALVGRSGIIEQLQLSLTEEEEAKLARSAQFIQDKFSEHI
>NZ_CP017295.1|WP_046165413.1|1608459_1609743_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKLRTNAKGLRGNLRVPGDKSISHRSIIFGSLAKGVTKVHDILRGEDVLSTMQVFREMGVQIEDKGDLVEIHGCGFDGLQEPQRPLDMGNSGTSMRLIAGVLAGQNFSAQMVGDDSLSKRPMDRISLPLRQMGVEIAGQTERDLPPLTIHGNQNLKPIQYQLPIASAQVKSALIFAALQAQGESLIIEKDLTRNHTEDMLLQFGGQLKVDGKEIRVVGKQELQAQEVVVPGDISSAAFWLVAGLIVPNSKITLTNVGINETRTGILDVIQAMGGKLSVSELDEVAKSATITVESSDLHGTEISGELIPRLIDELPIIALLATQAEGQTLIRDAEELKVKETDRIQVVADALNSMGADIQPTADGMIIQGKTSLKGASVHTYGDHRIGMMTAIAALLVKDGNVELERAEAINTSYPDFFAHLEDLVNV
>NZ_CP017295.1|WP_046165404.1|1620932_1621976_-|CRISPR-associated-protein-Cas7
MKMSIGHPYKDNISLSFGQFTQVVGQDQQLKYYIWQILLWYFGGKKYSEEDLVLFEQNEPRILIDDTVTSRSEFIVIQISNINDLIEQMEYKKGTVAYHYIKKKINSIEMMEQIENINDNLDRISLLLNHKLNLQIDDIVYHTEAKYFNTDQLIQKNFLPYFGQNGKNISFEFVDNKTKFLLFLSMLEAMVMDSDEKFLLVLRNMDDYLSYSEFVKCCEKMELLTNHSNSLYIVSFPSNEGYLHVTKEVLEEINIVSDYVDHFYSLEFMYDRFTNQYPINQIPDEQEFLTSLRKVGPYLFSSDILHMSLSIEDQVVLKILNNLYQYEMKTKFRIEAVNPMLLKYLEE
>NZ_CP017295.1|WP_001268300.1|1621972_1622296_-|CRISPR-associated-endonuclease-Cas2
MRYEALRLLCFFDLPMETNQEKRVYRNFRKDLIANGFEMLQFSVYYRTCPNRSFASKFYKKLSQSNLPSGNVRLLAVTEKQFSEMVLIIGGKTKQEEVVSDNKLVVI
>NZ_CP017295.1|WP_046165403.1|1622300_1623209_-|type-II-CRISPR-associated-endonuclease-Cas1
MTWRIVHVCQSEKMQLKLDNLLIKKMGQDYVIPLSDISIIVAEGGETVVTLRLLSALSKYNIALIVCDNEHLPTGIYHSQNGHFRAYKKLQEQLLWTQEQKDKLWQIVTYFKINNQQDVLSMFEKNIDCIQLLADYKDHIEYGDKTNREGHAAKVYFNELFGKKFVRLTQQETDVINAGLNYGYAIMRAQMARIISGYGLNPLIGIFHKNEYNQFNLVDDLMEPFRQIVDVWVYQNLRDEEYLKYEFRLALTNTLNAKIRYGKETCSVTVAMDKYVKGFLKCISDKDTSKFYCPMVSSVEWS
>NZ_CP017295.1|WP_046165401.1|1623380_1626791_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNGLVLGLDIGIASVGVGILEKDTGKIIHASSRLFPAATADNNVERRSNRQGRRLNRRKKHRSVRLQDLFEGYGLLTDFSKVSMNLNPYQLRVQGIENQLTNEELFIALKNIVKRRGISYLDDASEDGGTVSSDYGKAVEENRKLLAEKTPGQIQLERFEKYGQLRGDFTIEENGEKHRLINVFSTSAYRKEAERILRKQQEFNNKITDEFIEDYLTILTGKRKYYHGPGNEKSRTDYGRFRTDGTTLDNIFGILIGKCTFYPEEYRASKASYTAQEFNLLNDLNNLTVPTETKKLSEEQKKTIIEYAKSAKTLGASTLLKYIAKMIDASVDQIRGYRVDINNKPEIHTFEVYRKMQSLETIKVEELPRKVLDELAHILTLNTEREGIEEAIKSKLKDTFNRDQVLELVQFRKNNSSLFSKGWHNFSLKLMMELIPELYETSEEQMTILTRLGKQRSKETSKRTKYIDEKELTEEIYNPVVAKSVRQAIKIINEATKKYGIFDNIVIEMARENNEEDAKKNYIKQQKANQDEKNAAMEKAAFQYNGKKELPDNIFHGHKELTTKIRLWHQQGEKCLYTGKNIPISDLIQNQYKYEIDHILPLSLSFDDSLSNKVLVLATANQEKGQRTPFQALDSMDDAWSYREFKSYVKDSKLLSNKKKEYLLTEEDISKIEVKQKFIERNLVDTRYSSRVVLNALQDFYKSHQFDTTISVVRGQFTSQLRRKWGLEKSRETYHHHAVDALIIAASSQLRLWKKHNNPLISYKEGQFVDSETGEIVSLGDEEYKELVFKAPYDHFVDTLRSKKFEDSILFSYQVDSKYNRKISDATIYATRKAKLDKDKKEYTYTLGKIKDIYALGTKTPSKTGFYKFLDLYKTDKSQFLMYQKDRKTWDEVIEKIIEQYRPFKEYDKNGKEVDFNPFEKYRIGNGPIRKYSRKGNGSVIKSMKYYDNLLGKFVDITPSESKNPVALLSLNPWRTDVYYNPETRKYEFLGLKYADLCFGKGGSYGISEVKYNKIREKEEIGKESEFKFTLYKNDLILIKDTETNSQQIFRFWSRTGKDNPKRFEKHKIELKPYEKARFEKGEELEVLGNVPPSSNQLQKNMQIENISIYKVKTDVLGNKHFIKKEGEKPKLKFKK
>NZ_CP017295.1|WP_008809321.1|1627196_1627544_-|50S-ribosomal-protein-L19
MNPLIQSLTEGQLRTDIPAFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRALQGKAARIKEIRR
>NZ_CP017295.1|WP_046165400.1|1627659_1627986_-|fluoride-efflux-transporter-CrcB
MIWLMLAACGGGALVRYFFSKVNSRAALPVGTLMANLLGAFLIGYFYNHVQDKQLYTILATGFCGGLTTLSTFNAELIALFSNKKKFIHYLILTYCLGFLAIILGIFI
>NZ_CP017295.1|WP_046165399.1|1627982_1628357_-|fluoride-efflux-transporter-CrcB
MKEVKNSLAICLASMLGGWLRYLISSLVTFTGHFPLATLLVNYLGTFILVYLVKGYLANKQVSKRFILAISTGFCGGLTTFSSLLLDSIKLLDLGLYTDFILYLVLSIGGSLWIALWAGKKVAL
>NZ_CP017295.1|WP_046165398.1|1628353_1628620_-|chorismate-mutase
MNLEELRQEINQIDDELVVLLEKRMNLVNQVAAYKQETGKAVLDTKREEVILGRVADHVENPAYKDTILATFKDILKDSRAYQEQKKA
>NZ_CP017295.1|WP_046165397.1|1629044_1630427_-|Fe-S-cluster-assembly-protein-SufB
MPQRDYAFGFHDDIAPLYSTGKGLTEAVVREISAIKKEPQWMLDYRLRSLELFNKLPMPDFGPDLSGIRFEDVIYYQKLSGEPARSWDDVPEEIKRTFDRLGIPEAEKQFLSGAVAQYESEVVYHNMKEEFEKLGIIFTDTDTAVQEYPELVKQYFGTVVSNAEHKFAALNGAVWSGGTFIYVPRNVHCQIPVQTYFRINGENAGQFERSLMIIEEGGSIQYIEGCTAPTYTTNSLHAATVEIIVKKDAFFRYTTIQNWSDNVYNLVTERGTVEEGGTLEWIDGNLGSKVNMKYPCSVLNGRNARTSVLSMSFANYGQHLDAGCKVFHNAPKTSSTLISKSVAKDGGKTDYRGQVRFGKNSAGSKSHIECDTILMDGESSSDTIPFNEIHNSNVALEHEAKVSKVSEDQLYYLMSRGISEEEATAMIINGFMEPITKELPMEYAVELNQLINMSMEGSVG
>NZ_CP017295.1|WP_046165396.1|1630617_1632915_-|type-I-pullulanase
MPDYQVLVHYHNPTDDYLSYNIWQWQENQIGKEASFSNFDYFGRSGLVTYQSETNLDYVHLIIKKADWSSQTIDYTIRLLPAHLVTEVWILEGDHQVYYSRQAAITSHYYKYRNPHAFDMAVSSKEFDRHWGYQGSLGVFYQADKTEFKLWAPTAKAVEVVIYEDASNQADIWKTVFLKRGRDFSTDHTKNTIGVWQGSISEDLAKRAYQYRVIFDHEEYLTRDSYSLATSPDGKRTAIVTDQERNPLGFQVKQRQEAHWRVKNACQAVIYEMHIRDLSQSESSGVAPAYRGTFLGACQTGTTNDTGQETAFDHIRDLGVNYVQLQPVSDRHKDYDENGQVTYNWGYDPQNYNAPETSFSSNPSDPAQAIRDLKTLIQAYHDAGIGVILDVVYNHSYSTFDSPFQASVPDYYYRMNPDGSFQNGTGVGSETASEHEMFRKYMIDSLLYWVKEYNVDGFRFDLMGIHDVETMQIIRDELDKVDPRILTYGEGWDMGIGLLPQDKAKKDNAYQLLDIGFFNDNERDAIKGAEVFGTLKAGFVSGQGTENIIAKAILGSSELGSYLMPNQVVNYVEAHDNYNLHDLLREFHPHDDLETLTKRIELATAMNILMQGLAFMELGQEFSRTKLVGTGPNGQVTQADKERAMNSYNAPDQVNQVDWNLLSKHQDSVNFIRKIIQLKTTRKEFSYSTYEEIYQHVYVRHAQTNSGLIIFEVKDKKHYLVVFNASGTPYRLENADKLKLVVSNNRRKIKTEVENLTASVFEILA

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Crispr_ID: NZ_CP017295_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017295_2

1848224-1848368

Orphan

Consensus_repeat	Method
CAACCTAAAAATGTCTCCCAGAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP017295_2

>merge|NZ_CP017295|2|1848224-1848368|CRISPRCasFinder
CAACTTAAAAAGGTCCACTGGACCTTTTTAAATGTTAAGTTATTTTCGTAACTTTCTATCCACAACCTAAAAATGTCTCCCAGACTGTTTGAAGAAAACTCGCTGTTGCGAGTTCCCATCTGCAACCTAAAAATGTCTCCCAGAC

>NZ_CP017295|2|2|1848224-1848368|CRISPRCasFinder
CAACTTAAAAAGGTCCACTGGAC	CTTTTTAAATGTTAAGTTATTTTCGTAACTTTCTATCCA
CAACCTAAAAATGTCTCCCAGAC	TGTTTGAAGAAAACTCGCTGTTGCGAGTTCCCATCTG
CAACCTAAAAATGTCTCCCAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017295.1\|WP_046165254.1\|1845845_1847081_+\|aminoacyltransferase	unknown	unknown	gnl\|CDD\|367067
NZ_CP017295.1\|WP_012130688.1\|1849082_1849847_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223488
NZ_CP017295.1\|WP_046165261.1\|1837008_1838553_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP017295.1\|WP_045635066.1\|1853087_1853357_-\|YlbG-family-protein	unknown	unknown	gnl\|CDD\|179410
NZ_CP017295.1\|WP_008809559.1\|1853434_1854025_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
NZ_CP017295.1\|WP_046165258.1\|1842013_1842400_-\|DUF1934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378129
NZ_CP017295.1\|WP_008809553.1\|1848372_1849083_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP017295.1\|WP_045635065.1\|1854226_1854856_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP017295.1\|WP_096755033.1\|1844601_1845831_+\|aminoacyltransferase	unknown	unknown	gnl\|CDD\|367067
NZ_CP017295.1\|WP_046165257.1\|1842504_1843806_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NZ_CP017295.1\|WP_046165250.1\|1854953_1857614_-\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319772
NZ_CP017295.1\|WP_008809542.1\|1836445_1836694_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017295.1\|WP_046165256.1\|1843807_1844617_+\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_CP017295.1\|WP_046165259.1\|1839096_1841793_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781
NZ_CP017295.1\|WP_046165249.1\|1858124_1859291_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|224090
NZ_CP017295.1\|WP_046165251.1\|1851831_1852998_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380570
NZ_CP017295.1\|WP_046165252.1\|1849846_1850800_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NZ_CP017295.1\|WP_008809541.1\|1835667_1836414_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP017295.1\|WP_046165253.1\|1847149_1847806_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341361
NZ_CP017295.1\|WP_008809556.1\|1850803_1851673_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223633

Protein	Function_ID	Function_description	E-value
NZ_CP017295.1\|WP_046165254.1\|1845845_1847081_+\|aminoacyltransferase	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
NZ_CP017295.1\|WP_012130688.1\|1849082_1849847_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.7088e-132
NZ_CP017295.1\|WP_046165261.1\|1837008_1838553_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP017295.1\|WP_045635066.1\|1853087_1853357_-\|YlbG-family-protein	gnl\|CDD\|179410	PRK02302, PRK02302, hypothetical protein; Provisional.	7.47521e-43
NZ_CP017295.1\|WP_008809559.1\|1853434_1854025_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.2753e-128
NZ_CP017295.1\|WP_046165258.1\|1842013_1842400_-\|DUF1934-domain-containing-protein	gnl\|CDD\|378129	pfam09148, DUF1934, Domain of unknown function (DUF1934). Members of this family are found in a set of hypothetical bacterial proteins. Their precise function has not, as yet, been defined.	3.65484e-22
NZ_CP017295.1\|WP_008809553.1\|1848372_1849083_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	4.88655e-132
NZ_CP017295.1\|WP_045635065.1\|1854226_1854856_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	3.37033e-142
NZ_CP017295.1\|WP_096755033.1\|1844601_1845831_+\|aminoacyltransferase	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	1.03933e-147
NZ_CP017295.1\|WP_046165257.1\|1842504_1843806_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.67175e-157
NZ_CP017295.1\|WP_046165250.1\|1854953_1857614_-\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|319772	cd02077, P-type_ATPase_Mg, magnesium transporting ATPase (MgtA), similar to Escherichia coli MgtA and Salmonella typhimurium MgtA. MgtA is a membrane protein which actively transports Mg(2+) into the cytosol with its electro-chemical gradient rather than against the gradient as other cation transporters do. It may act both as a transporter and as a sensor for Mg(2+). In Salmonella typhimurium and Escherichia coli, the two-component system PhoQ/PhoP regulates the transcription of the mgtA gene by sensing Mg(2+) concentrations in the periplasm. MgtA is activated by cardiolipin and it highly sensitive to free magnesium in vitro. It consists of a transmembrane domain and three cytosolic domains: nucleotide-binding domain, phosphorylation domain and actuator domain, and belongs to the P-type ATPase type III subfamily. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP017295.1\|WP_046165256.1\|1843807_1844617_+\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	7.99489e-122
NZ_CP017295.1\|WP_046165259.1\|1839096_1841793_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP017295.1\|WP_046165249.1\|1858124_1859291_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	0
NZ_CP017295.1\|WP_046165251.1\|1851831_1852998_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380570	cd06347, PBP1_ABC_LivK_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	1.2267e-136
NZ_CP017295.1\|WP_046165252.1\|1849846_1850800_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	2.67329e-68
NZ_CP017295.1\|WP_008809541.1\|1835667_1836414_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.52361e-07
NZ_CP017295.1\|WP_046165253.1\|1847149_1847806_-\|CBS-domain-containing-protein	gnl\|CDD\|341361	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain. The putative Acetoin Utilization Protein (Acub) from Vibrio Cholerae contains a CBS pair domain. The acetoin utilization protein plays a role in growth and sporulation on acetoin or butanediol for use as a carbon source. Acetoin is an important physiological metabolite excreted by many microorganisms. It is used as an external energy store by a number of fermentive bacteria. Acetoin is produced by the decarboxylation of alpha-acetolactate. Once superior carbon sources are exhausted, and the culture enters stationary phase, acetoin can be utilised in order to maintain the culture density. The conversion of acetoin into acetyl-CoA or 2,3-butanediol is catalysed by the acetoin dehydrogenase complex and acetoin reductase/2,3-butanediol dehydrogenase, respectively. Acetoin utilization proteins, acetylpolyamine amidohydrolases, and histone deacetylases are members of an ancient protein superfamily.This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT (aspartate kinase/chorismate mutase/TyrA) domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	2.07307e-60
NZ_CP017295.1\|WP_008809556.1\|1850803_1851673_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	1.89574e-80

>NZ_CP017295.1|WP_046165253.1|1847149_1847806_-|CBS-domain-containing-protein
MAVKDFMTRKVVYISPDTTVAHAADIMREQGLHRLPVIENDKLVGLVTEGTIAEASPSKATSLSIYEMNYLLNKTKIKDVMIRKVITVSQYASLEDATYLMLKNKVGILPVVDNEQVYGVITDRDIFKAFLEVSGYGEEGVRARFVTEDEVGVLEHIVHLLVEENLNISNAVNIPRKDGKVVIEVQIDGKVDLEALKTKFEDNQIHVDSIVHTEAKAL
>NZ_CP017295.1|WP_046165254.1|1845845_1847081_+|aminoacyltransferase
MTFKLLSQEEFIQHTSASSQRSFMQTVEMAELLSKRGFSTQYVGYTDPQGQVVVSAVLYSMPMTGGLHMEINCGPVSTDAQYLPPFYQALQAYAKKEGALELIIKPYETYQTFDSNGQPTSDEKVELIQQLTDLGFDFDGLQTGYPGGEPDWHYVKDLAGLTEKDLLKSFSKNGKATVKKANTFGIKLTRLERDQLSIFKDITAATSDRREYDDKPLDYYQDFYDSFGQQADFMTASLNFKDYLQNLQKDQEKLGQKIQKLQTDLENNPQSEKKQNQLRELSSQFDSFETRKAEAQELIDKYGDQDQVLAASLFIYTPQEATYLFSGSYPEFNKFYAPALLQEYVMTESIKRGIPFYNFLGIMGIFDGSDGVLRFKQNFNGFIVRKMGTFRYYPNPLKFKIIQLIKKILRR
>NZ_CP017295.1|WP_096755033.1|1844601_1845831_+|aminoacyltransferase
MGFKIMFSYKIGISAQEHDDFVTAHPQANLLQSSAWAQIKDNWANERLGFYKDDHLVAVASVLIKPLPLGMTMLYIPRGPIMDYSDKELLTFVLASLKKFAKEKKALFVKFDPSLFLAESKMGGEMQDKSGTIELIQDLQQAGAVWVGRTESLDETIQPRLQANIHKEDFSEDLLSKSTRQAIRTARNKGIQIQFGGAELLDDFSGLMKKTENRKNIHLRGKDYYQKLLDTYPNHSYITLSSIDLKARLEDLQAQLTKTLKEAEKFTEKTKPGKIENNQQEQKRLQEEIDFLQDKISQGATVVPLSGTLVLEYGKTSENIYAGMDEEYRRYQPAIITWYETAKHAFERGADWQNMGGIENDLKGGLYSFKSKFNPTIEEFAGEFNLPTNPLYHLSNLAYTIRKKLRSKH
>NZ_CP017295.1|WP_046165256.1|1843807_1844617_+|sugar-phosphatase
MSIQLVAIDIDGTLLNNKKEITPEVFSAIQDAKATGIKIVIATGRPIAGVQKLLEELELNQPGNYVITFNGGLIQDTVTGQELIKETLSYDDYLDIELLGRKLGVHMHAITKDGIYTANRNIGKYTVYESNLVSMPIFYRTPEEMANKEIVKCMYIDEPEILDAAIAKLPPELTEKYTLVKSAPFYLEIVKKTVNKGAAVLHLAEKLGLSKEQTMAIGDEENDRAMLEAVGSPVVMENGKEELKKIAKYITKSNDESGVAYAIREWVLK
>NZ_CP017295.1|WP_046165257.1|1842504_1843806_+|HD-domain-containing-protein
MIEKVFRDPVHTYIHVDHQVIYDLINTKEFQRLRRIKQLGTSGYTFHGGEHSRFSHCLGAYEIARRITKIFDEKYLQTWDNHESLLVMVTALLHDVGHGAYSHSFERLFDTDHEEITRQIITSPETEINRVLTQVSPDFPEKVASVINHTHPNKQVVQLISSQIDVDRMDYLLRDSFYTGASYGQFDLTRILRVIRPVENGIAFQRNGMHAVEDYVVSRYQMYMQVYFHPASRAMEVLLQNLLKRAKFLYEDQKDFFKLTSPNLLPFFEKRFSLQDYLALDDGVMNTYFQSWMTSPDTILSDLAQRYVNRKVFKSMIFSEENEKHLDVLRQLVKQVGFEPDYYTAIHRNFDLPYDFYRPDVEKPRTQIEIIQKDGSLAELSSLSPIVQSLAGTRQGDNRFYFPKEMLTDAGLFNENSQAFLSYMKNDTFIYGE
>NZ_CP017295.1|WP_046165258.1|1842013_1842400_-|DUF1934-domain-containing-protein
MKIRMKNQIQLDGQTELIDQIYDAEWAQKGDHHYLLFKNEEDEKVVLKFHDTELTMTRFSNPKTLMRFIKDDRALVGVPTPMGIQTLMTDTQRYHLDLDKQIICLDYQLKTPDGERLFADYQMEISWL
>NZ_CP017295.1|WP_046165259.1|1839096_1841793_-|cation-translocating-P-type-ATPase
MSKEQKRQAFYTQDQDLVLQEMETSKEGLTSSEAAKRLSEYGRNELDEGEKKSLLVKFIEQFKDLMIIILLVAAVLSVVTSGGEDIADAIIILAVVIINAAFGVYQEGKAEEAIEALKSMSSPAARVLRDGHVAEVDSKELVPGDIVILEAGDVVPADLRLFEANSLKIEEAALTGESVPVEKDLSVELAEDAGIGDRVNMAFQNSNVTYGRGIGVVVNTGMYTEVGHIAGMLQNADETDTPLKQNLNNLSKVLTYAILVIAAVTFVVGVFIQGKDPLGELMTSVALAVAAIPEGLPAIVTIVLALGTQVLAKRNSIVRKLPAVETLGSTEIIASDKTGTLTMNKMTVEKVFYDAVLHDSSDDIELGLEMPLLRSVVLANDTKIDAEGNLIGDPTETAFIQYALDKGYDVKGFLEQYPRVAELPFDSDRKLMSTIHPLADGRYLVAVKGAPDQLLKRCVARDKAGDIAAIDDATSHLIKSNNSEMAHQALRVLAGAYKIIDSIPENLTSEELENNLIFTGLIGMIDPERAEAAEAVRVAKEAGIRPIMITGDHQDTAEAIAKRLGIIDENDSEDHVLTGAELNELSDEEFEKVVGQYSVYARVSPEHKVRIVKAWQNQGKVVAMTGDGVNDAPALKTADIGIGMGITGTEVSKGASDMILADDNFATIIIAVEEGRKVFSNIQKTIQYLLSANTAEVLTIFLATLFGWDVLQPVHLLWINLVTDTFPAIALGVEPAEPGVMTHKPRGRKSSFFSGGVMSSIIYQGLLQGALVLAVYGYAIANPVHIGDVKAIHADALTMAFATLGLIQLFHAYNVKSVYQSILTVGPFKSKTFNWSILVSFILLAATIVIDPLESIFHVTKLDLSQWAVVLLGSFSMIIIVEIVKFVQRKMGLDKNAI
>NZ_CP017295.1|WP_046165261.1|1837008_1838553_-|peptide-chain-release-factor-3
MNLQEEIKKRRTFAIISHPDAGKTTITEQLLYFGGEIREAGTVKGKKTGTFAKSDWMDIEKQRGISVTSSVMQFDYDGKRVNILDTPGHEDFSEDTYRTLMAVDAAVMVVDSAKGIEAQTKKLFEVVKHRGIPVFTFMNKLDRDGREPLDLLQELEEVLGIASYPMNWPIGMGKAFEGLYDLYNQRLELYKGDERFASLEDGDKLFGSNPFYEQVKEDIELLNEAGNEFSEEAILSGELTPVFFGSALTNFGVQTFLETFLKFAPEPHGHKKTDGEIVDPYDKDFSGFVFKIQANMDPRHRDRIAFVRIVSGEFERGMSVNLPRTGKSAKLSNVTQFMAESRENVTNAVAGDIIGVYDTGTYQVGDTLTVGKNKFEFEPLPTFTPEIFMKVSAKNVMKQKSFHKGIEQLVQEGAIQLYTNYQTGEYMLGAVGQLQFEVFKHRMEGEYNAEVVMTPMGKKTVRWISPDDLDERMSSSRNILAKDRFDQPVFLFENDFALRWFADKYPDVKLEEKM
>NZ_CP017295.1|WP_008809542.1|1836445_1836694_-|hypothetical-protein
MDNEEKEIIWKMPFNPLKDKAAKEYMIKENAEMQLSYNITEQIGGQLKAGFTLLDIYEDTNGSGRLHELNIKTYIAIKSVKR
>NZ_CP017295.1|WP_008809541.1|1835667_1836414_-|CPBP-family-intramembrane-metalloprotease
MSRKKAIFLYLLGTLGQIWLISIIVFVLRHLGMVVDYRTPMGMLAIGIGGLSTALWGTIIAVRYKKYSTKKILKDFFAIKQNRGSYLFAIVFLFLDFCYVAFDGELAFNTWYIPIILFLKAILFGGIEEVGWRYVFQPIMMERHSYISSTIFTFVPWGIWHFSYFYIEGTLPQVQALGFLLGLLTNCFILSALFIKTNSLWICVMTHSVINVFSQLAVGGNQNISYACRIIIIVMATVLSIREQNKND
>NZ_CP017295.1|WP_008809553.1|1848372_1849083_-|ABC-transporter-ATP-binding-protein
MTMLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTISGLVRPSAGKIEFLGNEIQKVPAQKIVAAGLSQVPEGRHVFPGLTVMENLEMGAFLKTNREENQANLKKVFSRFPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNANKALSIANRGYVLETGKIVLSGTGQELLASDEVRKAYLGG
>NZ_CP017295.1|WP_012130688.1|1849082_1849847_-|ABC-transporter-ATP-binding-protein
MALLDVKNLTKHFGGLTAVGDVTLELNEGELVGLIGPNGAGKTTLFNLLTGVYEPSEGTVTLDGHLLNGKAPYKIASLGLGRTFQNIRLFKDLTVLDNVLIAFGNHHKPHTFASFFRLPAFYKNEEELKNKALDLLKIFDLDKEAETLAKNLAYGQQRRLEIVRALATEPKILFLDEPAAGMNPQETAELTELIRRIKNEFNITIMLIEHDMSLVMEVTERIYVLEYGRLIAHGTPDEIKSNERVIEAYLGGEA
>NZ_CP017295.1|WP_046165252.1|1849846_1850800_-|branched-chain-amino-acid-ABC-transporter-permease
MKQNLKVNLLWLALILAGFVLITVLAGGGILNAFHLQILEEIGINIILAVGLNLIVGFSGQFSLGHAGFMAIGAYAVAIIGTKSPTYPAFFAAMILGAFIAGLVALGVGIPTLRLKGDYLAIATLGVSEIIRILIVNGGEVTNGAAGILSIPGFTSWQMVYFFVVITTLFTLNFLRSPLGRKTLSVREDEIAAESVGVNTTKAKVVAFVFGAITASIAGALKAGFIGAVVPKDYSFTNTINVLIIVVFGGLGSMTGTVIAAIVLGILNMLLQEFSSIRMIIYSLALILVMIFRPGGLLGTWELQLSRFFKKDKEVKE
>NZ_CP017295.1|WP_008809556.1|1850803_1851673_-|branched-chain-amino-acid-ABC-transporter-permease
MLQQLVNGLILGSVYALLALGYTMVYGIIKLINFAHGDIYMMGAFMGYFLINSLKLNFFLALIVAMIGTAILGVVIEFLAYRPLRNSTRIAALITAIGVSFLLEYLMVYFVGASTLPFPQVIPTVRFNLGPITVSNIQLMILGISIFLMLALQFIVQKTKMGKAMRAVSVDSDAAQLMGINVNRTISFTFALGSALAGAAGVLIALYYNSLEPLMGMTPGIKSFVAAVLGGIGIIPGAALGGFVIGLLETFATAFGMSDFRDAIVYGILIIILLIRPAGILGKNVKEKV
>NZ_CP017295.1|WP_046165251.1|1851831_1852998_-|ABC-transporter-substrate-binding-protein
MKKKFALTLVSLASVALLAACGEVSTTGNSGSASGTEIGKTLKIGFNFEETGDVASYGTAEQKAAKLAVDEINKAGGVDGKQIEITDKDNKSELSEASTVSTNLVTQAKVNAIIGPATSGGTGAAITNAAKASVPLITPSGTQDDLTKGQDYLFRTTFIDSFQGKILSKYVTDDLKAKKVVLYYDNSSDYAKGIAKAFQEEYKGEIVATETFASKDTDFQAALTKFKGKDFDALVVPGYYTEAGKIVNQARGMGIDKPIVGGDGFNSEEFISQATPAAATNVYYVSGYSTSGDMTAKAKKFLEAYKAKYNEEPSMFSALAYDSVYMVAEASKGAKNSVDIKENLAKLKDFEGVTGSITMDKNHNPVKSALMIGLKDGKVDTVETVKPN
>NZ_CP017295.1|WP_045635066.1|1853087_1853357_-|YlbG-family-protein
MYQKEERVGVIVYLYYNRDVKKVAAYGDIVYHSKKRRYLQLYVPKMQAEDLQKKLGQEKFVKKVRACHIQELDKNFVGSLHRQEENVII
>NZ_CP017295.1|WP_008809559.1|1853434_1854025_-|ATP-dependent-Clp-protease-proteolytic-subunit
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKTVEQIHADAERDYWMSAEETLAYGFIDEIMANNNLS
>NZ_CP017295.1|WP_045635065.1|1854226_1854856_-|uracil-phosphoribosyltransferase
MGKLEVIAHPLIQHKLSILRRTDTSTKAFRELVDEIAMLMGYEVLRDLPLEDVEIETPITKTVQKQIAGKKLAIVPILRAGIGMVDGLLSLVPAAKVGHIGMYRDEETLKPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGASHITFVCLVSAPEGVEALQEAHPDVDIFTAALDDHLNEHGYIVPGLGDAGDRLFGTK
>NZ_CP017295.1|WP_046165250.1|1854953_1857614_-|magnesium-translocating-P-type-ATPase
MKIVKERLVAALQLPMQETLAFYKTAFRGLTEEQVEENRDLYGENIITKGQEDSILKKIYESIINPFTVILLVIALVSLVTNVWLAKPGEEDPTTSIIIVVLVLISGGIRFIQELRSDRAASNLSRLIVNTATVIREGVEQELPIDEIVVGDIVKLSAGDMIPADVLLLESRDFFVQQSGLTGESDAVEKICLSKSDGQNLDSLLETESLAFMGTNVISGRATALVLVVGDDTMMGAIEQTLNTYDEPTSFERDMNSISWLLIRLMLVMVPVVFFINGLTDGDWLEAGVFALSVGVGLTPEMLPMIITASLAKGSIIMAQEKVVIKKLNAIQDLGAIDILCTDKTGTLTQDEIVLEYPLDIHGDLDLAVLRRAFLNSYYQTGLKNLMDRAIINRTEKEAEKHELVRDLDQTFKKIDELPFDFERRRMSVIVKDDEDVISMVTKGALEEMLAISSYVEYKNRITELTEEIRQEILAEVAQLNEQGLRVLGVSYKSDLEEDYDYEVKDESDMILTGYLAFLDPPKSSAAPAIETLAEYGVATKILTGDNEKVTQAVCEKVGLDVENILLGVEVDALSDEELSKAVENTTVFAKLSPDQKARIILQLKANGHKVGYMGDGINDAPSMKVADVGISVDTAVDIAKETADVILLDKDLMVLEKGLVEGRKVYANMTKYIKMTVSSNFGNIFSLLFASIFLPFLPMAPVHLIVLNLVYDLSCIALPFDNVDSEFLKKPRIWSANSITRFMAWIGPISSIFDVLTYLALYFIIVPMITGSSYQAGTEQAATFITLFQTGWFIESMWTQTMVIYMLRSPKLPFVQSRPALSVIVTTMAAALFVTSLPYSLFASVLKTAPLNGAYFLFLLLIIVLYMVSVTFVKHLYIKRYGEWL
>NZ_CP017295.1|WP_046165249.1|1858124_1859291_-|pyridoxal-phosphate-dependent-aminotransferase
MGKYNFKTAPNRFGHHTYKWKEAEEDREVLPAWIADMDFEVLPEIQQAVHDYADHLVYGYTYASEELIKAVLDWERDEHGYAFDRDALVFIEGVVPAISTAIQAFTKEGDAVLINTPVYPPFARSVKLNNRRLIANSLIEQDSLFQIDFEQLERDIVDNEVKIYVLCNPHNPGGRVWEREVLEKIGRLCQKYGVLVVSDEIHQDLTLFGHEHQSFNTVSPDFKDFSLILSSATKTFNIAGTKNSYAVIENPSLRHQFKKRQLANNQHEISGLGFVATEAAYRYGKSWLTELKTVLEENIDFVVDYFAKEAPRLKVMKPQGTYLIWLDFSDYDLTDDQLFQLLREEAKVVLNRGSDFGQEGKSHARLNAAAPKDMVVEICKRIGAVLPK

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Crispr_ID: NZ_CP017295_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017295_3

1977571-1977643

Orphan

Consensus_repeat	Method
AAATAAGTTTCCGTGAGAACTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017295_3

>merge|NZ_CP017295|3|1977571-1977643|CRISPRCasFinder
AAATAAGTTTCCGTGAGAACTATTCTACCACTTCAAAAGCGAAAGTCAAGAAAAAAGTTTCCGTGAGAACTAT

>NZ_CP017295|3|3|1977571-1977643|CRISPRCasFinder
AAATAAGTTTCCGTGAGAACTAT	TCTACCACTTCAAAAGCGAAAGTCAAG
AAAAAAGTTTCCGTGAGAACTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017295.1\|WP_046164615.1\|1982761_1983685_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376134
NZ_CP017295.1\|WP_046164616.1\|1983788_1985174_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP017295.1\|WP_046164618.1\|1986600_1988235_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP017295.1\|WP_046164609.1\|1973571_1975329_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP017295.1\|WP_008809688.1\|1966543_1967362_-\|antibiotic-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226953
NZ_CP017295.1\|WP_046164617.1\|1985307_1986591_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|227095
NZ_CP017295.1\|WP_046164750.1\|1975318_1977085_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP017295.1\|WP_046164608.1\|1970411_1972025_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP017295.1\|WP_046164607.1\|1969930_1970341_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379638
NZ_CP017295.1\|WP_012130786.1\|1972466_1973411_-\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
NZ_CP017295.1\|WP_046164611.1\|1978384_1978795_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|181704
NZ_CP017295.1\|WP_046164614.1\|1980623_1982435_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP017295.1\|WP_008809687.1\|1965756_1966542_-\|multidrug-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226218
NZ_CP017295.1\|WP_046164606.1\|1968642_1969524_-\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180926
NZ_CP017295.1\|WP_046164610.1\|1977806_1978376_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017295.1\|WP_046164619.1\|1988231_1988846_-\|DUF624-domain-containing-protein	unknown	unknown	gnl\|CDD\|227865
NZ_CP017295.1\|WP_046164612.1\|1978843_1979743_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|366120
NZ_CP017295.1\|WP_046164613.1\|1979983_1980508_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017295.1\|WP_046164605.1\|1967363_1968350_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226952
NZ_CP017295.1\|WP_012130789.1\|1977077_1977536_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
NZ_CP017295.1\|WP_046164615.1\|1982761_1983685_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376134	pfam18710, ComR_TPR, ComR tetratricopeptide. In Gram-positive bacteria, cell-to-cell communication mainly relies on extracellular signaling peptides. ComR is a member of the RNPP family, which positively controls competence for natural DNA transformation in streptococci. It is directly activated by the binding of its associated pheromone XIP. The crystal structure analysis of ComR shows that it contains an N-terminal helix-turn-helix (HTH), DNA binding domain (DBD) and a C-terminal tetratricopeptide repeat (TPR) domain. The TPR domain is composed of 11 alpha-helices forming 5 TPR motifs followed by an additional C-terminal alpha-helix 16 called CAP. The pheromone XIP binding site is found in the TPR region. Biochemical and mutational analysis indicate that, if the interacting XIP is accepted it can then trigger the conformational change of the TPR domain to open the DBD-TPR interface to allow dimer formation that is required to bind DNA.	1.62208e-47
NZ_CP017295.1\|WP_046164616.1\|1983788_1985174_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP017295.1\|WP_046164609.1\|1973571_1975329_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.8457e-172
NZ_CP017295.1\|WP_008809688.1\|1966543_1967362_-\|antibiotic-ABC-transporter-permease	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.465e-93
NZ_CP017295.1\|WP_046164617.1\|1985307_1986591_-\|response-regulator-transcription-factor	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.43468e-110
NZ_CP017295.1\|WP_046164750.1\|1975318_1977085_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.64598e-139
NZ_CP017295.1\|WP_046164608.1\|1970411_1972025_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP017295.1\|WP_046164612.1\|1978843_1979743_-\|ROK-family-protein	gnl\|CDD\|366120	pfam00480, ROK, ROK family.	1.39503e-83
NZ_CP017295.1\|WP_046164607.1\|1969930_1970341_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|379638	pfam14526, Cass2, Integron-associated effector binding protein. This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.	1.23517e-07
NZ_CP017295.1\|WP_012130786.1\|1972466_1973411_-\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.76536e-146
NZ_CP017295.1\|WP_046164614.1\|1980623_1982435_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP017295.1\|WP_046164611.1\|1978384_1978795_-\|peptide-deformylase	gnl\|CDD\|181704	PRK09218, PRK09218, peptide deformylase; Validated.	3.68081e-93
NZ_CP017295.1\|WP_046164606.1\|1968642_1969524_-\|fructose-bisphosphate-aldolase	gnl\|CDD\|180926	PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional.	0
NZ_CP017295.1\|WP_046164618.1\|1986600_1988235_-\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	2.16078e-63
NZ_CP017295.1\|WP_046164619.1\|1988231_1988846_-\|DUF624-domain-containing-protein	gnl\|CDD\|227865	COG5578, COG5578, Predicted integral membrane protein [Function unknown].	2.33869e-28
NZ_CP017295.1\|WP_012130789.1\|1977077_1977536_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.8344e-09
NZ_CP017295.1\|WP_046164605.1\|1967363_1968350_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226952	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	3.58444e-180
NZ_CP017295.1\|WP_008809687.1\|1965756_1966542_-\|multidrug-ABC-transporter-permease	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.83488e-108

>NZ_CP017295.1|WP_012130789.1|1977077_1977536_-|MarR-family-transcriptional-regulator
MEKPLLEFKRFGRKTQRIIEKRAKVCGMEFMGGPQGQVLHIVSHRAKRGLSTFIRDIEHELDISKSVASNLIKRMEKNGSIFLEVSETDKRAKMIHLTAQSKQQLKELHDFFNEIDRCLLQGVSEEELATFTLVMAKFHQNIEKLESEDANV
>NZ_CP017295.1|WP_046164750.1|1975318_1977085_-|ABC-transporter-ATP-binding-protein
MFKLFKRLTSKEIGLILMTVVFICLTVYLELEVPTYMSEITTLLQTPGTTTGDLWVPGLKMLGLSFASLFSLVIAGFVSSRMASSYTTRLREDIFNRVLDYSNSEIKKFSIPSLLTRTTNDITQIQVFIAMGLQVVIRGSIMAIWAMTKVVGKSDAWLIAVLVAVAAIILMTIVLVTLAFPKQSIVQTLTDKLNSVTRESLTGIRVVRAYNAEDYQDAKFGAANDEVTSLNIFINRFMSLFNPIMSGISSGLTLAIYWIGAYLIHSAASADKLGLFSDMVVFMSYGMQVVIGFLLMGALFIVLPRTLVSAGRINKVLAVDSSIKEKDQAQTEGQSKGQVAFEDVSFRYAKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLVNLITRFYDVTEGRILVDGIDVRDYELKALRNKVGYIPQKAVLFSGTIASNLDFGESMETPLDEEKMWEALELAQAKSFVEEKEAGLESKVAQGGTNYSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRKELAEQTQHMTKLIVAQRISTIMDADQILVLDNGKVVGQGTHKELLATNEVYQEIAYSQLSKEELENGK
>NZ_CP017295.1|WP_046164609.1|1973571_1975329_-|ABC-transporter-ATP-binding-protein
MENKKTSLFTQMKPYIKGFQLPFVIAVAGAIISSIITVFGPYKLREITNLITEGLVGEMDLGAISNIGFFLAFLYVVGSLINYAQGYAISDMIQHFSKRLRTAIAEKINRLPLSYFDSHSQGDTLSRVTNDVDTVGQSLTQSLGTLISSVLLLIAVLFMMFYTNVVLSFVTIGSVLLGFVFSAVLMAKSQRYFQEQQSNLAAINGYVEEMYSGHNVITSYNGAEKTRLAFNALNQNLYTSMWKSQFISGIMFPLMNFVGNFGYVMVVIVGATMAINGSISMGTIVAFMVYVRIFSQPLSQIAQGITTLQSASAAMGRVFEFLAEEDMEDDSHKLQQLTSVKGRVQFKDVFFGYNPDKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIDRGRITIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKDITDQAVVEAAKAVGVHHFIMTLPDGYDTVLDDTVSLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGNHDQLMEQGGFYADLYNSQFVEEDQE
>NZ_CP017295.1|WP_012130786.1|1972466_1973411_-|mannose-6-phosphate-isomerase,-class-I
MSEPLFLQSVMHEKIWGGTKLRDEFGYEIPSDKVGEYWAISAHPNGVSTVKNGRFAGQKLDTLYAEHRELFGDRSEPVFPLLTKILDANDWLSVQVHPDDAYGLKHEGELGKTECWYIIAADEGAEIIYGHNAKSKEELREQIESKNWDQLLTKVKVKAGDFFYVPSGTMHAIGSGILILETQQSSDTTYRVYDFDRKDDAGNLRELHLEKSIDVLNIGEPANSRPVNLQVDNLSSTLLVANDFFAVYKWELTGQADFTKTADYTLNSVLNGQGQLTVDGQVYPIHKGDHFILPSDVASWKLEGHDLEMIVSHP
>NZ_CP017295.1|WP_046164608.1|1970411_1972025_-|CTP-synthase
MSTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINIDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITDALKDKIKRAARTTDSDVIITEVGGTVGDIESLPFLEALRQMKADVGADNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPVGQNIKNKLAQFCDVAPEAVIESLDVEHLYQIPLNLQAQKMDQIVCHHLKLDVPTADMTEWSAMVEKVMNLKKQVHIALVGKYVELPDAYISVVEALKHAGYSNDAEVKIDWIDANQVTAENAAELLGSADGVIVPGGFGQRGTEGKIQAICYAREQDVPMLGICLGMQLTCVEFARHVLGLADANSAELNPDTPYPIIDLMRDQIDVEDLGGTLRLGLYPSKLKRGSKAAAAYDHQEVVQRRHRHRYEFNNAFREKFEAAGFVFSGVSPDNRLVEIVEIPENKFFVACQYHPELSSRPNRPEGLYTAFVTAAVEKSQER
>NZ_CP017295.1|WP_046164607.1|1969930_1970341_-|AraC-family-transcriptional-regulator
MFLNILASIRTNNFQDEHCIEKIQKIWKEQEPAVAEAFSEGEPVYAVYHDYASDYKGDYSLSICRLTDGDVYDFDTSEQTYQVFEADKEDPQAILHAWQRIWQAEETGELRRDYTFDFEKYDPDQTVAVFVATQQH
>NZ_CP017295.1|WP_046164606.1|1968642_1969524_-|fructose-bisphosphate-aldolase
MAIVSAEKFVQAARDNGYADGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKALIENLVESMGITVPVAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVATGIDFLAAGIGNIHGPYPANWEGLDLDHLKKLTEALPGFPIVLHGGSGIPDDQIQAAIKLGVAKVNVNTECQIAFANATRQFVREYDANEAEYDKKKLFDPRKFLKPGFEAITAAVEERIDVFGSEGKA
>NZ_CP017295.1|WP_046164605.1|1967363_1968350_-|ATP-binding-cassette-domain-containing-protein
MIEVEHLQKNFVKTVKEPGLKGALRSFIHPEKQTFEAVKDLTFEVPKGQILGFIGANGAGKSTTIKMLTGILKPTSGFCRINGKIPQDNRQDYVKDIGVVFGQRTQLWWDLALQETYTVLKEIYDVPDTLFHKRMDFLNEVLDLKDFIKDPVRTLSLGQRMRADIAASLLHNPKVLFLDEPTIGLDVSVKDNIRRAITQINQEEETTILLTTHDLSDIEQLCDRIFMIDKGQEIFDGTVSQLKESFGKMKTLSFELLPGQSHLVSHYEGLPDMTIEKQGNSLNIEFDSSHYQSADIIKQTLSDFEVRDLKMVDTDIEDIIRRFYRKEL
>NZ_CP017295.1|WP_008809688.1|1966543_1967362_-|antibiotic-ABC-transporter-permease
MVKLWRRYKPFINAGIQELITYRVNFLLYRIGDVMGAFVAFYLWKAVFDSSQESLIQGFSMADITLYIIMSFVTNLLTKSDSSFMIGEEVKDGSIIIRLLRPVHFAASYLFTELGSKWLIFISVGVPFLCVIVLVKILSGQGIVEVLGLTVLYLFSLTLAYLINFFFNICFGFSAFVFKNLWGSNLLKTSIVAFMSGSLIPLAFFPKVVSDILSFLPFSSLIYTPVMIIVGKYDASQILQALLLQFFWLLVMVGLSQLIWKRVQSFITIQGG
>NZ_CP017295.1|WP_008809687.1|1965756_1966542_-|multidrug-ABC-transporter-permease
MKKYQRMHLIFIRQYIKQIMEYKVDFVVGVLGVFLTQGLNLLFLNVIFQHIPSLEGWTFQEIAFIYGFSLIPKGLDHLFFDNLWALGQRLVRKGEFDKYLTRPINPLFHILVETFQIDALGELLVGGILLATTVSSIAWTLPKFLIFLVCIPFATLIYTSLKIATASIAFWTKQSGAMIYIFYMFNDFAKYPISIYNSLLRWLISFIVPFAFTAYYPASYFLQNKNGLFNIGGLILISLVFFFISLKLWDRGLDAYESAGS
>NZ_CP017295.1|WP_046164610.1|1977806_1978376_-|hypothetical-protein
MKVYKRDGSTFYFIGFLLLLGIFFTMAFASLDKQTTALESQNNANQIIYRNPISKEDERSGQTSEESDVMLNMVYWGVGIIAILMFVLGYISNHRPPILEMDQSGMRLRGLSDKSEKFFLWQEIEMIEYDLYRSHRTSADPDIRILYFYPKDQDASAISLNLDHVKDVSFNELHQQISELAPHIKWLFP
>NZ_CP017295.1|WP_046164611.1|1978384_1978795_-|peptide-deformylase
MQQAIVKDILFLQQKSEVAVKSDLYLAQDLQDTLLANQENCVGLAANMIGVKKRVIIFMYGMVPIIMFNPVLRAKSGPYQTEEACLSLVGSRSTTRYQEITVDYLDRNWQPQTITLKDFPAQICQHELDHLEGILI
>NZ_CP017295.1|WP_046164612.1|1978843_1979743_-|ROK-family-protein
MTKLYGSLEAGGTKFVCAVGDEKFEIVEKTQFPTTTPIETLDKTIEFFSRFENLAGLAVGSFGPIDIDQNSKTYGFITTTPKPHWANVDIVGVLRRALNVPIYFTTDVNSSAFGEVVARNNAGGRIENLVYYTIGTGIGAGAIQRGEFIGGAGHPEMGHYYVAKHPMDVEKEFNGVCPFHNGCLEGLAAGPSLEARTGIRGENIELNSSVWDIQAYYIAQAAIQATVTFRPDVIVFGGGVMAQQHMLDRVREKFAVLLNGYLPVPDVRDYIVTPAVAGNGSATLGNFVLAKEISERHAK
>NZ_CP017295.1|WP_046164613.1|1979983_1980508_-|hypothetical-protein
MKKKGNVISLIVGLVFGSSFLVRTFLIYQAREAKRQEVAKVKDVQKTIQSLDEKRSEEVKKQLSKTLSSALASRSAYEKYTQIDNQYALGVRAGAYYLVTLSTKEERLLEGVDQAFSTTYKDEDNGETGVALLGHKDGVWHVLDEKGETIITLEQTDISPESKMIIKNNTVSFQ
>NZ_CP017295.1|WP_046164614.1|1980623_1982435_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGVVGNRNATDILMQGLEKLEYRGYDSAGIFVTTGKNSSLVKSVGRIADLRSKIGIDVAGSTGIGHTRWATHGKPSESNAHPHRSETGRFVLVHNGVIENYLEIKEEYLAGHHFKGQTDTEIAVHLIGKFVEEDGLLVLEAFKKALHIIRGSYAFALVDSEDSEVIYVAKNKSPLLVGLGEGYNMVCSDAMAMIRETNQFMEIHDQELVIVRKDSVEVQDYDGNLQERESYTAELDLSDIGKGTYPYYMLKEIDEQPTVMRKLIQAYTDENGQVVVDPAIVKAVQEADRIYILAAGTSYHAGFASKKMLEELTDTPVELGISSEWGYGMPLLSKKPLFIFISQSGETADSRQVLVKANEMGIPSLTVTNVPGSTLSREANHTMLLHAGPEIAVASTKAYTAQIAALAFLAKAVGDANASEKAAAFDLVHELSLVAQSIESTLSEKELIENKVDNLLGTTRNAFYIGRGQDYYVAMEASLKLKEISYIQCEGFAAGELKHGTIALIEEGTPVLALLSDPVLANHTRGNIQEVAARGANVLTIAEENVAKDNDDIVLSQVHPYLSPISMVVPTQLVAYYATLHRGLDVDKPRNLAKSVTVE
>NZ_CP017295.1|WP_046164615.1|1982761_1983685_-|helix-turn-helix-transcriptional-regulator
MDFKTELGQRIQNLRESKGLSRQAICDLEDVLTTRQLQRIEKGQSLPTIATAKYIADKLDVSLDVLANNNSLALPLEYIDLKYQLRTLYHYGDPERLRLLEKIIDEIYENHFENLPEEEQLSIQVVQATVDMIGAKDPSFDQGLLDEYLEQAMKKKELSFNDVEIIQLRLLSLALGDFNQEEFVDLLSKVILAADYFPLSELEKVQNTIVSAAGVLAHYGIYEILPDIVNVLNDIMTKRRDFQDNIFVHALNWKVALFIEDNLEKAKNDYQKVCMMADLLSEDLVKRNMQEEWIEDLEKKGLKYTKI
>NZ_CP017295.1|WP_046164616.1|1983788_1985174_-|glycoside-hydrolase-family-1-protein
MLTFPKDFVWGSSTSGPQTEGRVPGDGKGDNLWDYWYQVEPNRYYNEIGPEQTSTFYQHWEQDIDLLVETGHTAFRTSIQWSRIFPQGRGEVNHQGVAFYRQVFEAIKAKGIRLLVNLYHFDLPFALQEDGDGWENKATIKAYVDYARFCFETYGDLVDQWITFNEPIVPVEFGYFYDAHYPHKVDAKAAVQVAYHTQLASTLAVKVCHEILPDSKIGIVLNLTPAYPRSQHPADVKAARIADLFQAQSFLDPSVLGTYPEELVEILSEHDLLPDYTAEELELIREHTVDFLGVNYYQPLRVMAPRFAKHPDSPLLPEHFYEPYDMPGRKINPHRGWEIYEQGIYDIAQNIKENYGNIEWMLTENGMGVEGEERFREDGFIQDDYRIDFVKGHLRQLHRAIQDGANCTGYLMWTFIDCWSWLNSYKNRYGLIELNLETQERIIKKSGYWFRKLSQQNGFEE
>NZ_CP017295.1|WP_046164617.1|1985307_1986591_-|response-regulator-transcription-factor
MHKVLLVDDEYMITEGLKVLIPFEKWNMEVVATANDAEEALDYVKNHPVDLVITDVNMPGMNGLEMIAQMKESLPKLAFIILSGYQEFEYVKKALNLQVADYLVKPVNKVELAAILEKLSQQFDQSSHYQMEAIFQDGLSEEDLTRLLEKEETIWLGASRVPQGIASTSYSVSGQNLYLFLSRTKEESLYQIELVSPYKENLQQFKSNLEKVVFYGTVGLQQADPLFQYYEPMYRVIIQGNINQILDELDLLKGVVLSHTPRISITKQLFIQFMMDVYHLFEHLKPDDMTSIIKEIEGMMSFEDLLDYIKQKLTHLFAQYRMNENVASVLEVIGRDYQKDLSLKDISKDLFINPVYLGQLIKRETNSTFAELLNKQRIKAAQQLLLSTNDSIEDVCYAVGYSNVGYFYKVFRKLCGKSPKAYRQQVD
>NZ_CP017295.1|WP_046164618.1|1986600_1988235_-|sensor-histidine-kinase
MKKFWLNSLLRVYAMTMFVIVGFVALLISYASWQSKVQEVTETSQRISTRLVDEVESYYQRGVQITKNLVGNQAKLEGVYNYFTMSPSEYIYWRLNNGLLGIVEVSLHENVADIYLQNDFVAGFDIALQDYKTVFVSTRQKQGGMQVEASKYKPAKNAFPIPIYDSVTSNHIGVAYLTIDSQVFEQTIDNIRNTTPVLVKITSPFQKNMLTFGEGKSKNWLVKETPHGYGVQVAVPEHYVLERSLVNALAIVAISAILTGSLYLILQRVFRNYQSQVIDLVDTIQAIGQGDSHLRIETATKEQELLLIADNTNTMLDNLDRNIHDIYQLQLSQKDANMRALQAQINPHFMYNTLEFIRMYAVMKSQEELADIIYEFSSLLRNNISDETQVTLESELEFCRKYSYLCMVRHPNSVAYGFTIAEELKGMIIPKFTIQPLVENYFVHGVDYRRKDNVISVKVLKKSDAVQIIVQDNGRGIKADKLAEIQQILANRQLENSENKEKRTSIGIINIHERFLLFFGDRYSIAVESGENRGVRYIIEIKDE
>NZ_CP017295.1|WP_046164619.1|1988231_1988846_-|DUF624-domain-containing-protein
MGKFIEFIFQKIYMAMLASGIFLVLTLCGGVLFGLAPASTVLMTLFAQYRYDYKAYKWQEAWSLFKENFLRSNQVFYTLLSIEAIFLYGLYLLVQLPQSILTVIISILNLLLALLLPLAYAVYLKLQVYFELSYINSIKLSFIGMFLNVGAMFKIAFGTAMIMAIFYYMPALVFFVFLGAWHFFISDLLEPVYQLIASRLVDKP

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Crispr_ID: NZ_CP017295_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017295_4

2128070-2128157

Orphan

Consensus_repeat	Method
AAACTGACATTTTGTCAGTTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017295_4

>merge|NZ_CP017295|4|2128070-2128157|CRISPRCasFinder
AAACTGACATTTTGTCAGTTTTGGCGTAAAATTTTTTATAATTTAGATTAAGAGATTGAAGGCTCAAACTGACATTTTGTCAGTTGTG

>NZ_CP017295|4|4|2128070-2128157|CRISPRCasFinder
AAACTGACATTTTGTCAGTTTTG	GCGTAAAATTTTTTATAATTTAGATTAAGAGATTGAAGGCTC
AAACTGACATTTTGTCAGTTGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017295.1\|WP_046164698.1\|2117272_2120104_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP017295.1\|WP_002896497.1\|2129687_2129978_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP017295.1\|WP_046164703.1\|2125606_2125801_-\|DUF1648-domain-containing-protein	unknown	unknown	gnl\|CDD\|377929
NZ_CP017295.1\|WP_046164701.1\|2124196_2125012_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017295.1\|WP_008810025.1\|2130189_2130753_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP017295.1\|WP_046164696.1\|2115076_2116009_-\|Tim44-domain-containing-protein	unknown	unknown	gnl\|CDD\|214950
NZ_CP017295.1\|WP_046164700.1\|2123226_2124225_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017295.1\|WP_000068664.1\|2128901_2129141_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP017295.1\|WP_046164704.1\|2125800_2127411_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017295.1\|WP_046164708.1\|2130800_2131622_+\|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|225217
NZ_CP017295.1\|WP_046164707.1\|2129179_2129671_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180915
NZ_CP017295.1\|WP_046164710.1\|2134684_2135488_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224026
NZ_CP017295.1\|WP_012130907.1\|2134242_2134524_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP017295.1\|WP_046164702.1\|2125014_2125482_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017295.1\|WP_046164709.1\|2132597_2134220_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP017295.1\|WP_045634141.1\|2131715_2132474_-\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|224551
NZ_CP017295.1\|WP_046164705.1\|2127337_2128051_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP017295.1\|WP_046164697.1\|2116059_2117121_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_CP017295.1\|WP_046164706.1\|2128191_2128806_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP017295.1\|WP_081325076.1\|2121436_2123149_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017295.1\|WP_046164698.1\|2117272_2120104_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP017295.1\|WP_002896497.1\|2129687_2129978_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	2.20483e-39
NZ_CP017295.1\|WP_046164703.1\|2125606_2125801_-\|DUF1648-domain-containing-protein	gnl\|CDD\|377929	pfam07853, DUF1648, Protein of unknown function (DUF1648). Members of this family are hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and in fact many of these sequences contain a high proportion of hydrophobic residues.	7.92321e-05
NZ_CP017295.1\|WP_008810025.1\|2130189_2130753_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	8.13206e-112
NZ_CP017295.1\|WP_046164696.1\|2115076_2116009_-\|Tim44-domain-containing-protein	gnl\|CDD\|214950	smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region.	1.53366e-18
NZ_CP017295.1\|WP_000068664.1\|2128901_2129141_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	3.32721e-37
NZ_CP017295.1\|WP_046164708.1\|2130800_2131622_+\|PrsW-family-intramembrane-metalloprotease	gnl\|CDD\|225217	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones].	6.33864e-19
NZ_CP017295.1\|WP_046164707.1\|2129179_2129671_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|180915	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional.	3.24446e-103
NZ_CP017295.1\|WP_046164710.1\|2134684_2135488_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224026	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	1.13379e-117
NZ_CP017295.1\|WP_012130907.1\|2134242_2134524_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	2.52102e-33
NZ_CP017295.1\|WP_046164709.1\|2132597_2134220_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP017295.1\|WP_045634141.1\|2131715_2132474_-\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|224551	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown].	6.90729e-95
NZ_CP017295.1\|WP_046164705.1\|2127337_2128051_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.04441e-90
NZ_CP017295.1\|WP_046164697.1\|2116059_2117121_-\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	6.16009e-108
NZ_CP017295.1\|WP_046164706.1\|2128191_2128806_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.89275e-18

>NZ_CP017295.1|WP_046164705.1|2127337_2128051_-|ABC-transporter-ATP-binding-protein
MLKIEHLTKVYSNGKKAVNDLSLMVEPGDIYGFIGANGAGKTSTIKAIVGIHDFDKGEIYICGHSIRKEPLLCKKKMAFLPDNPDLYKNLTARQFLDFVADVYRVSLEKRQAAIEKYSKMFELDTSLDQLISAYSHGMKQRLALIAALLHEPELLILDEPFVGLDPKGAYYFKQIMRELASQGHAIFFSTHVLEVAEELCNKVAILQKGRLVANGTTSEVKGTSSLEQVFMELQEDD
>NZ_CP017295.1|WP_046164704.1|2125800_2127411_-|hypothetical-protein
MERPLKLRGHLVWNKYLWSYRKMTNILLLLKVQLYNTFSLNDLRKGRGLGRYFKLGLLFLLVLLFSGYNLLTALSLVKLGQANLIPAYMIALVSFIIFFFSLMQSNGILFDQEELDRLIVLPLSIREIVYEKYAFLYLLNSVFAILLMLPAGLVWFGYGASLLELLLYLLLMGFIPLLPLCLASLLGLCVAYIASKTPHKNLVAFLFSLLLLFGLATGSMWAMRAGLSAENVGLLLTKQLTSLYPPASLFFNPQHFWWSSLLLMFVSFALTGLFLRYLSRNYLKINQMITGMSSERKAYRSCQKSPFMALYRREFANFVSSYLYMLNSGLGTILIIVLAISLCFMGPDVLFSSIGLRDSREFLPLLLASCLSISNPAAVSISLEGEEIWLLQTLPVSMRQIMMAKLALTVSLHFVALLLGLPVLTWRFSLGGLQVVDLVLISLAYSLFTALQGLVVNFHYPKFIWDNEMIVIKQSFSAILSGGIGILVLVFPLCLSLLFGMDLEISLRISALGLLLLAVVLYRHLIKQGYFKEVHG
>NZ_CP017295.1|WP_046164703.1|2125606_2125801_-|DUF1648-domain-containing-protein
MKKKDLFVLFLLAVILFLIICLLPEQVPIHFNRVGKADIVVNRFWLILSLPIPYSLYWKYFRSK
>NZ_CP017295.1|WP_046164702.1|2125014_2125482_+|hypothetical-protein
MSENKERVKVSFPWQIGLLVALYLVIASMPFLHDKTSQFYLFQNNNPIFGGKEFADLNNSYFKNSFIFLSVLPALAVLLKFILKNKGYPFLASLQSFLLFIASFVLMVYTMFSITIQRDIYKLDWGYYFCQIIFLIFIFNDLSFLRAWVKKIPSS
>NZ_CP017295.1|WP_046164701.1|2124196_2125012_+|hypothetical-protein
MLLKKILKINSDKWKSILVLVCFLALLSLFFYKNLEANLKGFYANRNFPGEIKITGFSWAEERTGIDVNFTYTEKINGKNISLPLKKSVRFKQLVMPYYDKIDLSDRYNPISELGTTYDESIRVYLPMIEKMLEINPERTKLEESLTRKLNQTPDISGASAKLRSTLSDQANFVRGETWYSDRIEDATKNKHSILEELYDFSLNHALSQGAIYVQIILPKGVDREDIHLRDQIQQLLEQLSLPDGAYVLGTIDEARGDFVVVEQGKIREGR
>NZ_CP017295.1|WP_046164700.1|2123226_2124225_+|hypothetical-protein
MKKLENFSWQMWQIYALAALVVFIVGGACSFFFVKEATYVVKERNYVYKGKNLRLTNYVTIGENEPEFPMIALSFKEDDNERGSSIFAVGRKYLAVQDSKQYDGTLKKKEKEEYFRIRYYQLGQEKGEGQTIDALKLVQDMGYVTINGELDNQMYSDGKNDYVKIQIDYDNEIYINLTNKKATKKRPKETIQFGYGGIYRALSGPSFITEAYSDDESNIHSYGPWFKYEKDDKESSLTGNSSDKNHSSSNVKTEDNVTLATLKKYGYLLVLKENMTLDDSETLTKILYPDASYFHWTIRSRYTKTGREEYVETDQEFKQVIKEDAIEKDIED
>NZ_CP017295.1|WP_081325076.1|2121436_2123149_-|hypothetical-protein
MIEWYYYIFIREANMDQTRFKKIIKISSFFFLALVTYLIYYPTISPEPAKREVISKNHSRTESEERYRIGVSQVNDFQKIGNIALAIDKFGKVQEKDGYLVAQNYKLPEDPYPDEGKAFYDKKNTEYFYQIDIYKEDEGIQSLKKVDVRAILLKEKKKYNIKSTAKLDVLDSSPDAPYIEIALEEIDGGPQKASLIIDLKTEKSRIAHYIGASQEEVLTASDNSEFKIAQSNPIFADRLKSLSFIVDAKKDTNPYDNQEKQNQEKVIMMRPYQGGDLINLYQEYPHALEMAKKGSFAIYPLFKYTQDSTQQASDFASLFNYPGEAPFWSTQKKQEYEAEQIVKQKKSPETPLPYDLFIKKVQEEGKINWAEGIVPIGLDIDSEEVVTVDFKKGPVYTQHFDLYDHISALGSLTDLSSTNMMLNQVSFDKTRRYGIKTVKDVSTLIDESKRSNPAGPQYINWLQYNPSSPLSESYMNTVKEIVEQGPLYRIFSIFSLEVGQMMVSQAETNDNLVAGSISVMVQNGNQALVPLQFKINNFHDLTPDKMIKSGRIIYVLIDGQLRRVKVPEER
>NZ_CP017295.1|WP_046164698.1|2117272_2120104_-|excinuclease-ABC-subunit-UvrA
MQDKIVIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCVNGHGAITASSVEQIVDQVLELPERQRLQILAPVIRKKKGQHKTVFDKIQKDGYVRVRVDGEIYDVTEVPDLSKSKQHDIEVVVDRIVIKEGVRSRLFDSVEAALRIAEGYVVIDTMDGKELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEVDLDLVVPDSSMTLREGALAPWNPISSNYYPQMLEQAMTSFGIDMDKPFEELSEEEKQLIFFGSDGREFHFHYENEFGGVRDIDIPFEGVVTNINRRYHETNSDYTRTQMRTYMNELSCVACHGYRLSPQALSVRVGGEAGLHIGEISDLSIADHLLQLDKLSLTDNEATIARPILKEIHDRLTFLNNVGLNYLTLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLIDVGPGAGVFGGEIVAAGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFIEITGAAENNLQNITARFPLGKFIAVTGVSGSGKSTLVNSILKKTLAQRLNRNSDKPGKFKTISGVDYIDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNEAKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKEKNISQILDMTVNDAVDFFKHIPKINRKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDISRLLKVLDRFVDDGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGTIIATGTPEEVAANPTSYTGQYLKEKLHQK
>NZ_CP017295.1|WP_046164697.1|2116059_2117121_-|aminopeptidase-P-family-protein
MLARVEKFEAALAQTECDAVLVTNLKNIYYLTGFSGTEATVFISKTRRIFLTDARYTLIAKGVVQGFDIVETRDALGEIAKIIADDKLEKIGFDDEISYAYFKMLESLFSGYELVPMTGFIENLRMIKDEQEIATIRKACQISDQAFLDVLDFIKPGETTELAVMNFLDARMRQLGASGASFDFIIASGYRSAMPHGVASEKVIQNGETLTMDFGCYYNHYVSDMTRTIHVGQVTDEEREIYDIVLRSNQALIEAAKAGLSRIDFDRIPRHIINDAGYGPYFSHGIGHGIGLDIHEIPYFGKSGEPIETGMVLTDEPGIYLDGKYGVRIEDDLLITETGCEVLTLAPKELIVI
>NZ_CP017295.1|WP_046164696.1|2115076_2116009_-|Tim44-domain-containing-protein
MKKGILVFATIFLVLLFFLAPAVDAGVGNSESGGSSLIDSGGGSSWSGGDSWSGGSSSYSSSSGSGSSGSFAVVVISGVIGLLYNLVKGTDDTSSSNNELKRTTEERAGKPIQNNLEAIRQLKQQDPNFDEERFLSQVKVIYLRLQSAWTEKDWASVRGLESPSLYDQHSTQLQEHIRAKTTNVLERVRVENSKIKDFYPNPQGHDRLEVILSSTMRDYIRDDETGRIIEGDPTKDLFTVYRLNFIRLHDAKTEEVTKTDILSDHCPNCGAPLTIDSVSKCEYCQASLVRTAQDWLLDTYDVVDEIEFYK
>NZ_CP017295.1|WP_046164706.1|2128191_2128806_-|TetR/AcrR-family-transcriptional-regulator
MRDVKEVEVRRAEIMSAALQLFAQKGYLKTRTQDIIDKLGISRGLLYYHFKDKEDILYCLIEKNSEPLLRKLEKISYQPNVGAKEKIRAFIEATLIPEESRTQENQVLQETVNLETNRYVLDRFYHRLCERMIVFFTHILEEGQKSGDFHLKYPHETASFLMTAYVFVSNDIKMSNEKPETLQDYLTSFQAILEKTLGLEESIF
>NZ_CP017295.1|WP_000068664.1|2128901_2129141_-|30S-ribosomal-protein-S18
MAQQRRGGFKRRKKVDYIAANKIEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIKRARVMALMPFVNED
>NZ_CP017295.1|WP_046164707.1|2129179_2129671_-|single-stranded-DNA-binding-protein
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTRNYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAQSFGGADSSHQVPNFSRDENPFGNSNPMDISDDDLPF
>NZ_CP017295.1|WP_002896497.1|2129687_2129978_-|30S-ribosomal-protein-S6
MAKYEILYIIRPNIEEEAKNALVARFDSILTDNGATVVESKDWEKRRLAYEIQDFREGLYHIVNVEANDDAALKEFDRLSKINADILRHMIVKLDA
>NZ_CP017295.1|WP_008810025.1|2130189_2130753_+|GTP-cyclohydrolase-I-FolE
MSDFEKLQETVYQLLKLVGENPDREGLLDTPKRVAKMYQEVFSGLGRDPKDEFTAVFSEGHEEVVLVKDIPFHSMCEHHLLPFYGVAHVAYLPSNGKVTGLSKLARAVEVASKRPQLQERLTAQIATALDEALSPEGVFVMVEAEHMCMTMRGIKKPGSKTVTTVAKGIYKENVHQRQEILSMIHHD
>NZ_CP017295.1|WP_046164708.1|2130800_2131622_+|PrsW-family-intramembrane-metalloprotease
MKKKLVFLLFLTLICIGIEYETKTYTLGELSGKAYGIIGLAALLALLYIVPASLIILHVQKKWKTPLASLIIAFLGGLFIAGWTSGLANTYIHDGVSTLSISFINDLESAIVAPLVEEPLKLIGVAFALYLVPVKNLKSILLLGIVAGFGFQISEDFSYILSDMSEGFSFAISGILGRVVGSIASHWLYTGLTAFGLTLMIRYRKKIASNFKTGLIYFLAAFILHFIWNSPLSAIETEIPLVRPILSALAIFTFFLAYQTAARLDNDQPSLHF
>NZ_CP017295.1|WP_045634141.1|2131715_2132474_-|epoxyqueuosine-reductase-QueH
MIDVEEILSKMNPNQKINYDRVMQKMVQDWEKDQKRPTILMHTCCAPCSTYTLEYLSQYADVTIYFANSNIHPKAEYQRRAYVTQKFVSDFNEKTGYTVQYLEAPYAPQEFFRKVHGLEDEPEGGDRCKVCYDYRLDKTAEVAVELGFDYFGSALTISPHKNSQTINSVGIEVQKVYATHYLPSDFKKNQGYKRSVEMCEEYDIYRQCYCGCVFGAQDQGIDLVKVKKEAAAFMTGKDLEKDYSHIKFTVID
>NZ_CP017295.1|WP_046164709.1|2132597_2134220_-|chaperonin-GroEL
MAKDIKFSADARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIEAAVATAVEALKETAIPVSNKEAIAQVAAVSSRSEKVGEYISEAMEKVGNDGVITIEESKGMETELDVVEGMQFDRGYLSQYMVTDSEKMVADLDNPYILITDKKISNIQEILPLLESILKTNRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITEDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGNPEAIANRVAVIKSQIESATSEFDKEKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNATRAAVEEGIVSGGGTAFVSVLDAVAGLELTGDEATGRNIVLRALEEPVRQIAFNAGFEGSIVIDRLKNSEAGTGFNAATGEWVNMIEAGIIDPVKVTRSALQNAASVASLILTTEAVVANQPDPASPAPAMDPSMMGGMM
>NZ_CP017295.1|WP_012130907.1|2134242_2134524_-|co-chaperone-GroES
MLKPLGDRVVLKIEEKEEKVGGFVIAGNSHAATKTATVVAVGQGVRTLTGELVAPSVKAGDKVLVESHAGVEVKDGEETYLLVSEANILAIVE
>NZ_CP017295.1|WP_046164710.1|2134684_2135488_-|ATP-binding-cassette-domain-containing-protein
MPLLTLTNIHKTFEKGTINENPVLRGLDLEIEQGDFISVIGGNGAGKSTLMNSIAGVVEIDEGDILLDGQSIRKSSVADRSKSISRVFQDPRMGTATNLTIEENMAIAYRRGKKRSFFKRSITEEERQIFKGALEHLGLGLENRMKTDANFLSGGQRQALTLSMATLVRPKVLLLDEHTAALDPKTSDMVMNLTKKVVEEQKLTTLMVTHNMEHAIEYGNRLIMLFHGKIVVDVKGKEKENLTVAQLMDLFHKNSGQVLNDDALVLG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017295_1	1.5\|1620272\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620272-1620301	30	MK448884	Streptococcus phage Javan246, complete genome	18403-18432	0	1.0
NZ_CP017295_1	1.8\|1620468\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620468-1620497	30	MK448714	Streptococcus phage Javan241, complete genome	15702-15731	0	1.0
NZ_CP017295_1	1.10\|1620600\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620600-1620629	30	MK448882	Streptococcus phage Javan242, complete genome	10783-10812	0	1.0
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448884	Streptococcus phage Javan246, complete genome	24717-24747	1	0.968
NZ_CP017295_1	1.5\|1620272\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620272-1620301	30	NC_010945	Streptococcus phage PH15, complete genome	17541-17570	1	0.967
NZ_CP017295_1	1.10\|1620600\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620600-1620629	30	MK448881	Streptococcus phage Javan240, complete genome	12754-12783	1	0.967
NZ_CP017295_1	1.12\|1620732\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620732-1620761	30	MK448909	Streptococcus phage Javan330, complete genome	2908-2937	1	0.967
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448965	Streptococcus phage Javan506, complete genome	25447-25477	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448791	Streptococcus phage Javan517, complete genome	23930-23960	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448959	Streptococcus phage Javan488, complete genome	25447-25477	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	NC_004587	Streptococcus prophage 315.4, complete genome	24025-24055	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	NC_003157	Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome	25295-25325	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448686	Streptococcus phage Javan157, complete genome	25099-25129	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448977	Streptococcus phage Javan530, complete genome	23930-23960	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448949	Streptococcus phage Javan460, complete genome	26107-26137	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448958	Streptococcus phage Javan486, complete genome	24358-24388	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448788	Streptococcus phage Javan511, complete genome	23930-23960	2	0.935
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MK448951	Streptococcus phage Javan470, complete genome	24251-24281	3	0.903
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	MF417961	Uncultured Caudovirales phage clone 10S_15, partial genome	3688-3718	3	0.903
NZ_CP017295_1	1.1\|1620008\|31\|NZ_CP017295\|CRISPRCasFinder,CRT	1620008-1620038	31	NC_010945	Streptococcus phage PH15, complete genome	23833-23863	4	0.871
NZ_CP017295_1	1.9\|1620534\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620534-1620563	30	MH230177	Aeromonas phage SD04, complete genome	21162-21191	5	0.833
NZ_CP017295_1	1.9\|1620534\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620534-1620563	30	LR597659	Escherichia phage T5_ev212 genome assembly, chromosome: 1	81546-81575	5	0.833
NZ_CP017295_1	1.6\|1620338\|29\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620338-1620366	29	AP013398	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S30-C38	26892-26920	6	0.793
NZ_CP017295_1	1.6\|1620338\|29\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620338-1620366	29	NZ_KX868552	Klebsiella variicola strain H152460787 plasmid pJF-787, complete sequence	16675-16703	7	0.759
NZ_CP017295_1	1.6\|1620338\|29\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620338-1620366	29	NZ_KY680213	Klebsiella aerogenes strain N15-1247 plasmid pN151247-1, complete sequence	14645-14673	7	0.759
NZ_CP017295_1	1.6\|1620338\|29\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620338-1620366	29	NZ_CP033468	Enterobacter cloacae strain E3442 plasmid p3442-IMI-2, complete sequence	33345-33373	7	0.759
NZ_CP017295_1	1.6\|1620338\|29\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620338-1620366	29	KX094567	Escherichia coli strain RJ18 plasmid pRJ18, complete sequence	1041-1069	7	0.759
NZ_CP017295_1	1.8\|1620468\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620468-1620497	30	AY266303	Bacteriophage Aeh1, complete genome	163076-163105	7	0.767
NZ_CP017295_1	1.8\|1620468\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620468-1620497	30	NC_005260	Aeromonas phage Aeh1, complete genome	163076-163105	7	0.767
NZ_CP017295_1	1.11\|1620666\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620666-1620695	30	NZ_CP019641	Planococcus sp. Y42 plasmid unnamed1, complete sequence	102606-102635	7	0.767
NZ_CP017295_1	1.3\|1620141\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620141-1620170	30	MN693589	Marine virus AFVG_25M348, complete genome	29539-29568	8	0.733
NZ_CP017295_1	1.6\|1620338\|29\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620338-1620366	29	KU234533	Nostoc phage A1, complete genome	8643-8671	8	0.724
NZ_CP017295_1	1.11\|1620666\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620666-1620695	30	NC_029119	Staphylococcus phage SPbeta-like, complete genome	98368-98397	8	0.733
NZ_CP017295_1	1.13\|1620798\|30\|NZ_CP017295\|CRISPRCasFinder,CRT,PILER-CR	1620798-1620827	30	NZ_CP010728	Phaeobacter inhibens strain P88 plasmid pP88_c, complete sequence	1998-2027	8	0.733

1. spacer 1.5|1620272|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to MK448884 (Streptococcus phage Javan246, complete genome) position: , mismatch: 0, identity: 1.0

acccgagcaattgaaggttatccacaatca	CRISPR spacer
acccgagcaattgaaggttatccacaatca	Protospacer
******************************

2. spacer 1.8|1620468|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to MK448714 (Streptococcus phage Javan241, complete genome) position: , mismatch: 0, identity: 1.0

tatccattttaagcgacttgatgcgctctt	CRISPR spacer
tatccattttaagcgacttgatgcgctctt	Protospacer
******************************

3. spacer 1.10|1620600|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to MK448882 (Streptococcus phage Javan242, complete genome) position: , mismatch: 0, identity: 1.0

cgtttgattggaggtgaggatgtgcgaaaa	CRISPR spacer
cgtttgattggaggtgaggatgtgcgaaaa	Protospacer
******************************

4. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448884 (Streptococcus phage Javan246, complete genome) position: , mismatch: 1, identity: 0.968

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
caggggcgataaaatgcccacgtaaggcgtt	Protospacer
************************.******

5. spacer 1.5|1620272|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to NC_010945 (Streptococcus phage PH15, complete genome) position: , mismatch: 1, identity: 0.967

acccgagcaattgaaggttatccacaatca	CRISPR spacer
acccgagcaattgaaggttatcaacaatca	Protospacer
********************** *******

6. spacer 1.10|1620600|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to MK448881 (Streptococcus phage Javan240, complete genome) position: , mismatch: 1, identity: 0.967

cgtttgattggaggtgaggatgtgcgaaaa	CRISPR spacer
cgtttgaatggaggtgaggatgtgcgaaaa	Protospacer
******* **********************

7. spacer 1.12|1620732|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to MK448909 (Streptococcus phage Javan330, complete genome) position: , mismatch: 1, identity: 0.967

caatgcgatagattgatattccctgatttg	CRISPR spacer
caatgcgatagattgatatcccctgatttg	Protospacer
*******************.**********

8. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

9. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

10. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

11. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

12. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

13. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

14. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

15. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

16. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

17. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 2, identity: 0.935

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
aaggtgcgataaaatgcccacgtagggcgtt	Protospacer
 *** **************************

18. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MK448951 (Streptococcus phage Javan470, complete genome) position: , mismatch: 3, identity: 0.903

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
atggtgcgataaaatgcccacgtagggcgtt	Protospacer
  ** **************************

19. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to MF417961 (Uncultured Caudovirales phage clone 10S_15, partial genome) position: , mismatch: 3, identity: 0.903

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
ctggtgcgataaaatgcccgcgtagggcgtt	Protospacer
* ** **************.***********

20. spacer 1.1|1620008|31|NZ_CP017295|CRISPRCasFinder,CRT matches to NC_010945 (Streptococcus phage PH15, complete genome) position: , mismatch: 4, identity: 0.871

caggggcgataaaatgcccacgtagggcgtt	CRISPR spacer
cttgtgcgataaaatgcccacgcagggcgtt	Protospacer
*  * *****************.********

21. spacer 1.9|1620534|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to MH230177 (Aeromonas phage SD04, complete genome) position: , mismatch: 5, identity: 0.833

-tggtaaaagatatttttgcagttgtgatag	CRISPR spacer
ctggt-ggagatatttttgcagatgtcatag	Protospacer
 **** ..************** *** ****

22. spacer 1.9|1620534|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to LR597659 (Escherichia phage T5_ev212 genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.833

-tggtaaaagatatttttgcagttgtgatag	CRISPR spacer
ctggt-ggagatatttttgcagatgttatag	Protospacer
 **** ..************** *** ****

23. spacer 1.6|1620338|29|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to AP013398 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S30-C38) position: , mismatch: 6, identity: 0.793

atgatgtaaaataatggcattttctataa	CRISPR spacer
atgttgtaaaataatggcattagatttac	Protospacer
*** *****************   * **

24. spacer 1.6|1620338|29|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX868552 (Klebsiella variicola strain H152460787 plasmid pJF-787, complete sequence) position: , mismatch: 7, identity: 0.759

atgatgtaaaataatggcattttctataa	CRISPR spacer
tttcagtaaattaatggcgttttctatat	Protospacer
 *   ***** *******.*********

25. spacer 1.6|1620338|29|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY680213 (Klebsiella aerogenes strain N15-1247 plasmid pN151247-1, complete sequence) position: , mismatch: 7, identity: 0.759

atgatgtaaaataatggcattttctataa	CRISPR spacer
tttcagtaaattaatggcgttttctatat	Protospacer
 *   ***** *******.*********

26. spacer 1.6|1620338|29|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033468 (Enterobacter cloacae strain E3442 plasmid p3442-IMI-2, complete sequence) position: , mismatch: 7, identity: 0.759

atgatgtaaaataatggcattttctataa	CRISPR spacer
tttcagtaaattaatggcgttttctatat	Protospacer
 *   ***** *******.*********

27. spacer 1.6|1620338|29|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to KX094567 (Escherichia coli strain RJ18 plasmid pRJ18, complete sequence) position: , mismatch: 7, identity: 0.759

atgatgtaaaataatggcattttctataa	CRISPR spacer
tttcagtaaattaatggcgttttctatat	Protospacer
 *   ***** *******.*********

28. spacer 1.8|1620468|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to AY266303 (Bacteriophage Aeh1, complete genome) position: , mismatch: 7, identity: 0.767

tatccattttaagcgacttgatgcgctctt	CRISPR spacer
tatccgtttttagcgacttgatgaacgttg	Protospacer
*****.**** ************ .* .*

29. spacer 1.8|1620468|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to NC_005260 (Aeromonas phage Aeh1, complete genome) position: , mismatch: 7, identity: 0.767

tatccattttaagcgacttgatgcgctctt	CRISPR spacer
tatccgtttttagcgacttgatgaacgttg	Protospacer
*****.**** ************ .* .*

30. spacer 1.11|1620666|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019641 (Planococcus sp. Y42 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

caacagaagaacacaacaacacaggatatg	CRISPR spacer
caacagaacaacacaacaacaatttacagg	Protospacer
******** ************    *.* *

31. spacer 1.3|1620141|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to MN693589 (Marine virus AFVG_25M348, complete genome) position: , mismatch: 8, identity: 0.733

cgcatctcatccttgtgactctctacgaat	CRISPR spacer
tgcatctcttgcttgtgactctctcatagc	Protospacer
.******* * *************   *..

32. spacer 1.6|1620338|29|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to KU234533 (Nostoc phage A1, complete genome) position: , mismatch: 8, identity: 0.724

atgatgtaaaataatggcattttctataa	CRISPR spacer
ggagattaaaataatggcagtttctaaaa	Protospacer
. ..  ************* ****** **

33. spacer 1.11|1620666|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to NC_029119 (Staphylococcus phage SPbeta-like, complete genome) position: , mismatch: 8, identity: 0.733

caacagaagaacacaacaacacaggatatg	CRISPR spacer
taagagatgaacacaacaacacagagaaaa	Protospacer
.** *** ****************.. * .

34. spacer 1.13|1620798|30|NZ_CP017295|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010728 (Phaeobacter inhibens strain P88 plasmid pP88_c, complete sequence) position: , mismatch: 8, identity: 0.733

caagctcgtttcttgtgtggtgtcctattt	CRISPR spacer
aagcctcttttcttgtgtggtgtcctgcag	Protospacer
 *. *** ******************..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26884 : 37221

Streptococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081325065.1\|26884_28696_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.0e-24	28.5
WP_046164514.1\|28714_29410_-	tyrosine-protein kinase	A0A1X9I5D6	Streptococcus_phage	1.3e-81	68.4
WP_046164515.1\|29419_30115_-	capsular biosynthesis protein CpsC	A0A1X9I5E1	Streptococcus_phage	1.0e-62	57.8
WP_046164516.1\|30145_30877_-	tyrosine protein phosphatase	NA	NA	NA	NA
WP_046164517.1\|30880_32341_-	LCP family protein	A0A1X9I5X1	Streptococcus_phage	1.0e-144	63.2
WP_046164518.1\|32633_33233_-	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	1.1e-55	59.1
WP_046164519.1\|33229_33748_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046164520.1\|33757_34264_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046164521.1\|34273_34777_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046164522.1\|35016_37221_-	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	1.2e-282	66.2

DBSCAN-SWA_2

1329167 : 1335718

Streptococcus_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000873143.1\|1329167_1329338_+	hypothetical protein	A0A1X9I6E4	Streptococcus_phage	3.7e-22	98.2
WP_000417519.1\|1329723_1330941_+	macrolide efflux MFS transporter Mef(A)	A0A2K5B2B5	Erysipelothrix_phage	5.1e-198	90.6
WP_000420313.1\|1331060_1332524_+	ABC-F type ribosomal protection protein Msr(D)	A0A1B0RXA0	Streptococcus_phage	3.7e-251	97.3
WP_001072467.1\|1332641_1332941_-	hypothetical protein	A0A1B0RX98	Streptococcus_phage	1.8e-48	96.0
WP_000567222.1\|1332927_1333296_-	hypothetical protein	A0A1B0RXA8	Streptococcus_phage	1.1e-58	97.5
WP_000806926.1\|1333308_1333644_-	hypothetical protein	NA	NA	NA	NA
WP_001813542.1\|1333640_1333886_-	hypothetical protein	A0A1B0RXA7	Streptococcus_phage	2.6e-37	98.8
WP_009664199.1\|1334280_1334898_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_009664098.1\|1335007_1335718_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	5.3e-14	28.0

DBSCAN-SWA_3

1753814 : 1761830

Streptococcus_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046165311.1\|1753814_1754408_+	helix-turn-helix transcriptional regulator	A0A0A7AQV8	Bacillus_phage	6.4e-05	37.1
WP_046165310.1\|1754433_1755063_-	endonuclease III	NA	NA	NA	NA
WP_046165309.1\|1755291_1755786_-	hypothetical protein	NA	NA	NA	NA
WP_080998587.1\|1755796_1755985_-	hypothetical protein	NA	NA	NA	NA
WP_052721547.1\|1756132_1756381_-	hypothetical protein	NA	NA	NA	NA
WP_155465114.1\|1756420_1756588_-	hypothetical protein	NA	NA	NA	NA
WP_046165308.1\|1757075_1757429_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.0e-34	58.1
WP_046165307.1\|1757438_1757936_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.2e-57	65.2
WP_046165306.1\|1757983_1758838_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	2.0e-100	66.2
WP_008809472.1\|1758840_1759164_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	1.5e-32	71.0
WP_046165305.1\|1759178_1760078_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.6e-82	55.1
WP_012130610.1\|1760074_1760713_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.3e-75	65.6
WP_046165304.1\|1760966_1761830_+	YitT family protein	M1Q1P6	Streptococcus_phage	2.0e-95	61.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017295

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection