CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP011248	Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence	0 crisprs	NA	0
NZ_CP011246	Agrobacterium tumefaciens strain Ach5 chromosome circular, complete sequence	1 crisprs	cas3,WYL,csa3,DEDDh	4
NZ_CP011249	Agrobacterium tumefaciens strain Ach5 plasmid pTi, complete sequence	0 crisprs	NA	0
NZ_CP011247	Agrobacterium tumefaciens strain Ach5 chromosome linear, complete sequence	0 crisprs	DEDDh,csa3,RT	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011246_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011246_1

2683679-2683780

Orphan

Consensus_repeat	Method
ACGACCGGCGCAGGCAACGACACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011246_1

>merge|NZ_CP011246|1|2683679-2683780|CRISPRCasFinder
ACGACCGGCGCAGGCAACGACACGGTTACCGTATCTGTCGTTTCGAACGAAAAGACCTGGGTCAACAATTTCAACATCGACACCGGCGCAGGCAACGACACG

>NZ_CP011246|1|1|2683679-2683780|CRISPRCasFinder
ACGACCGGCGCAGGCAACGACACG	GTTACCGTATCTGTCGTTTCGAACGAAAAGACCTGGGTCAACAATTTCAACATC
GACACCGGCGCAGGCAACGACACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011246.1\|WP_038492441.1\|2678264_2679011_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP011246.1\|WP_003516610.1\|2677007_2677574_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP011246.1\|WP_038492447.1\|2681796_2683110_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP011246.1\|WP_038492457.1\|2691680_2692694_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP011246.1\|WP_003516599.1\|2684378_2685656_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP011246.1\|WP_003516582.1\|2687554_2689069_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|227123
NZ_CP011246.1\|WP_038492435.1\|2673093_2674209_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293841
NZ_CP011246.1\|WP_003516612.1\|2676425_2676803_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP011246.1\|WP_038492460.1\|2693372_2695199_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP011246.1\|WP_038492451.1\|2689322_2690039_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226360
NZ_CP011246.1\|WP_013636924.1\|2676074_2676392_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|181719
NZ_CP011246.1\|WP_038492444.1\|2680067_2681804_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP011246.1\|WP_038492438.1\|2677578_2678268_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP011246.1\|WP_038492463.1\|2695203_2695857_-\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|224480
NZ_CP011246.1\|WP_003516567.1\|2696106_2697033_+\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|224809
NZ_CP011246.1\|WP_046205573.1\|2690035_2691661_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP011246.1\|WP_019566018.1\|2686083_2687493_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP011246.1\|WP_003516616.1\|2674491_2676063_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP011246.1\|WP_003516574.1\|2692888_2693281_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|226134
NZ_CP011246.1\|WP_003492508.1\|2679278_2679818_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418

Protein	Function_ID	Function_description	E-value
NZ_CP011246.1\|WP_038492441.1\|2678264_2679011_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.92284e-25
NZ_CP011246.1\|WP_003516610.1\|2677007_2677574_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	4.40122e-67
NZ_CP011246.1\|WP_038492447.1\|2681796_2683110_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	4.44538e-116
NZ_CP011246.1\|WP_038492457.1\|2691680_2692694_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP011246.1\|WP_003516599.1\|2684378_2685656_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.73628e-98
NZ_CP011246.1\|WP_003516582.1\|2687554_2689069_-\|M48-family-metalloprotease	gnl\|CDD\|227123	COG4784, COG4784, Putative Zn-dependent protease [General function prediction only].	0
NZ_CP011246.1\|WP_038492435.1\|2673093_2674209_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.18536e-73
NZ_CP011246.1\|WP_003516612.1\|2676425_2676803_+\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	7.04085e-41
NZ_CP011246.1\|WP_038492460.1\|2693372_2695199_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP011246.1\|WP_038492451.1\|2689322_2690039_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226360	COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism].	7.24636e-129
NZ_CP011246.1\|WP_013636924.1\|2676074_2676392_+\|chorismate-mutase	gnl\|CDD\|181719	PRK09239, PRK09239, chorismate mutase; Provisional.	2.40531e-61
NZ_CP011246.1\|WP_038492444.1\|2680067_2681804_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP011246.1\|WP_038492438.1\|2677578_2678268_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.75293e-141
NZ_CP011246.1\|WP_038492463.1\|2695203_2695857_-\|thiamine-diphosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	5.57121e-83
NZ_CP011246.1\|WP_003516567.1\|2696106_2697033_+\|homoserine-O-succinyltransferase	gnl\|CDD\|224809	COG1897, MetA, Homoserine trans-succinylase [Amino acid transport and metabolism].	0
NZ_CP011246.1\|WP_046205573.1\|2690035_2691661_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP011246.1\|WP_019566018.1\|2686083_2687493_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP011246.1\|WP_003516616.1\|2674491_2676063_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP011246.1\|WP_003516574.1\|2692888_2693281_-\|VOC-family-protein	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	1.12375e-72
NZ_CP011246.1\|WP_003492508.1\|2679278_2679818_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	7.50876e-69

>NZ_CP011246.1|WP_038492447.1|2681796_2683110_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MVEGEKTGVTKTSIVKHSTAVVVLAAGLLFGLGGWAALAKLSGAVVATGRVVVEGNSKKIQHLSGGIVSQINVAEGDTVEAGQVLLRLSGTIVQANLSIVENTLAQLYARRARLRAEISDATSFITPEDLAVLTNSKAAKTFIDSEQNLFNSRRSALIGMKKQLVTRKDQLADEARGMDVQIEATNNELAIVREDVSKTRELYAKGLVTLQRLNLLKRQLSNLEGQQGQYMAARAQTVGKLSEMDLQSLQLDEDRKSEVTKDLTSIEATVAEYEERLAATRDQLDRLDIRSPIAGRIYQLSVHNINGVIQPGEVLMLVVPAKEDLAIDANVLPNDIDQIYVGQPVTIRFTAFNQSTTPDVSAEVAVVAPDLQTDSRSGASFYALRIKPSKTGMDHIPGGRLYPGMPAEVFIQTSERSVLSYFVKPFQDRLRKTFLQE
>NZ_CP011246.1|WP_038492444.1|2680067_2681804_+|type-I-secretion-system-permease/ATPase
MFFFNSFLTKNKRAFLAVGLASALMNILNLSGSLFMLEVYDRILPSKSIPSLVALVVLLVILYAFLVGFDALRGRILARISDNMDDELNQKLFRASISAPLAAYGKVDGLQIVGDLDQIRQFLSGPGPAAFFDIPWLPIYLLICFALHPWIGFAVLGGALVLVVLTLVTNWLTERATKQAYTVRGQRNALVGSSQRNIESIRTMGMMNAVTSMWDDLHSNYRAVTLSTSDTAGMLAAISRTFRLLLQSGVMAIGALLVIEGHASAGSIIAGSILSAKALGPVEHAIANWRSFMTARQGWKRINEFLELVPEPAQPLSLPPPKYTVAIDRVTGGPPNGARDTVADISFTLNAGDGLGIIGPSASGKSTLARLITGIWPYERGSVRFDGAALNQWDFEVLGKSIGYMPQQVELMPGTVAQNIARFDRDATAEAIVSAAKAAQVHDLILNLPNGYDTYIGDRGEALSGGQKQRIGLARALFGEPFFVILDEPNSNLDSEGEAALRNAIGDIRARGGIVVVIAHRPSAIESVNLVMVMSNGRMLRFGTKEEVLAQILRQNIRQVPETEEEVRKLESRVGENG
>NZ_CP011246.1|WP_003492508.1|2679278_2679818_+|50S-ribosomal-protein-L19
MTNIIQQLEAEQAAKIEAKRTLPEFSPGDTLRVNVRVTEGNRTRVQAYEGVCIARSGGGLSESFTVRKISYGEGVERVFPIYSPLVEGVEIVRRGKVRRAKLYYLRDRRGKAARIVENTGTRARKLNESERQAVAEEKARLEAEKVAAAQALAAEKAAAEAAEAKAAEEAAKAAETAAE
>NZ_CP011246.1|WP_038492441.1|2678264_2679011_-|sulfite-exporter-TauE/SafE-family-protein
MSVLIIMMLFATGFLSGVVNAIAGGGTFLTFGAMTLAGLPPIVANATSAIVQFPGYITSVIAYGPEIRAHWREAILLSAVSIVGALAGSLLLLSLDNPSFRQLVPWLLMAATVVFAAGPWLRPKASAERSPGNVPSLFFQGLASIYGGFFGAGMGIMMLAILGMTSGGSYHHLNAVKNLLSVVIAIIAITIFVSGGVVSWWAALIMFPAAALGGYVGVHTARRVPQWIIRWLVIAVGLVLTAYYFFSV
>NZ_CP011246.1|WP_038492438.1|2677578_2678268_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MTFKATVLTLYPEMFPGHLGYSLAGKALEREQWSLEAVQIREFATDRHRSVDDTPAGGGAGMVLKPDILAAAIDHVSDGDTRPRLLMSPRGKPLSQDRVRELAAGDGAIIVCGRFEGVDQRVIEARGLEEVSIGDYILSGGEPAALTLLDAIVRILPGVMGNDLSGVHESFEGGLLEHPHYTRPQVWEGRDIPAVLTSGNHAVIDKWRHEQALALTKERRPDLLEKAKV
>NZ_CP011246.1|WP_003516610.1|2677007_2677574_+|ribosome-maturation-factor-RimM
MAKLENPILMAKIGGAQGLRGEVRVSTYTDEPMALGDYGNLVSADGRVFEILEVREGKNVVVVRFRGINDRNAAESLNGLELFIERDNLPDDELDDDEFYYADLEGLEAVDAEGKSYGAVSAVYDFGAGDLLELKGAGRRPALIPFSEAAVLEIDLEARRILIDPMAAGLIDNPDDKDETGASPFGKK
>NZ_CP011246.1|WP_003516612.1|2676425_2676803_+|30S-ribosomal-protein-S16
MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKVGSWNPMLAKDNPQRIELKADLIKEWIAKGAQPTDRVLRFLAEAGLADRAARSNPEKALPGKRALERVAEKKQKAEDAAAAAAEASAAE
>NZ_CP011246.1|WP_013636924.1|2676074_2676392_+|chorismate-mutase
MNNAEVKAQLSEYRQSIDNIDAALVHILAERFRCTKAVGVLKAKYNLPPADPAREEYQIERLRRLAKDANLDPDFAEKFLNFVIKEVIRHHEAIAAEHGGNEKTA
>NZ_CP011246.1|WP_003516616.1|2674491_2676063_+|signal-recognition-particle-protein
MFENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPVIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARAMAEKMAKGKFDLNDLSDQLAQMKKMGGMGGIMGLMPGMAGMKDKMASAGLNDKMFDRQIAIISSMTKAERANPDILKHSRKKRIAAGSGTDAAEINKLLKMHRGMADMMKAMGGKGKGGIMKQMMGGLAGKMGLGGMMGGGMPDLSNIDPKQLEALQKQAEAAGLGKPGAMPGLGGLPGGLPGLGGTKLPGLGGMPGLPGFPKKK
>NZ_CP011246.1|WP_038492435.1|2673093_2674209_-|MBL-fold-metallo-hydrolase
MAVLERRRLASYTFPMKRRNFFRFSALGLLALAGGGLFARRSNASAYYSGPVSDHFDGVRFFNPGGSPPGNFMGLLKWRFNGERATWPENYPSPFPFAKPEPRIDGKDIRVTFVGHASFLIQTAGLNILIDPVWSQRTSPFSFAGPKRVNPPGIRFEDLPPIDLVLVTHNHYDHLDMETLKRLHVAHKPLFITPLGNDAIIRTGVEAARIKVGDWGDVLEIGSVKIHFEPCHHWSARGLNDRRMALWAAFVIETPYGKIYHIGDTGFHDGLNYHAARKKHGEFRLANLPFGAYEPRWFMKGQHQNPAEAVEGMKICGAAHVCGHHWGTVQLTDEAVEAPLVALKAALAEQGIDQSRFQPMRPGEVFDVPSA
>NZ_CP011246.1|WP_003516599.1|2684378_2685656_-|MFS-transporter
MVSEKSLISKITWRLMPFLGLLYLIAYIDRQNVSYAKLQMVDALSLSEYAYGLGASLFFIGYFLFEVPSNLFLNRFGASKWFARILVSWGAVTIALAYTQNATMFYILRFLLGLCEAGFFPGVLFLMTLWFPRDYRGRMIGLFMIFSALANAIGAPLGGMLLDLDGFLGYAGWEWVFLATGIPAVIAGIVTFFYLDDTPEKAKFLTQAEKDWLKNRLAEENKGMEEHAEDGFKALINPRVLFMALCYVGFPLAAYGLSYWLPTIVKSFGVSNTANGFINIIPWVIVAVALFVVPLAADKAKNKTPYIVGPAFVGAFCLLMSALLSDPVLQFAFLCIAAAGIFAGQPVFWSLPGRFLKGAGAAAGIAAINSVGNLGGFVAQNVVPWIKDQTGSTIAPMFFLAFCLALAGVLVIIAARKMGNQAEAA
>NZ_CP011246.1|WP_019566018.1|2686083_2687493_+|3-isopropylmalate-dehydratase-large-subunit
MSAPRTLYDKIWDDHVVNRDPDGTCLLYIDRHLVHEVTSPQAFEGLRIAGRPVHSPTRTLAVVDHNVPTTADRLEGIKNEESRIQVEALAQNAKDFGVEYYSERDKRQGIVHIVGPEQGFTLPGMTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGKVPEGVTAKDIILAIIGEIGTAGGTGHVIEFAGEAIRSLSMEGRMTVCNMTIEGGARAGLIAPDETTFDYIKDKPRAPKGETLEQAIAYWKTLKSDEGAHYDKIVVLDAANLPPIVSWGSSPEDVTSVEGIVPNPDDIEEENKRTSKWRALDYMGLKPGTRITDIAIDRVFIGSCTNGRIEDLRAAAKIVDGRKVAPTVSAMIVPGSGLVKEQAEKEGLDKIFLEAGFEWREPGCSMCLAMNDDRLKPGERCASTSNRNFEGRQGYKSRTHLVSPAMAAAAAIAGHFVDVREWR
>NZ_CP011246.1|WP_003516582.1|2687554_2689069_-|M48-family-metalloprotease
MTAQWRLFSRSGLRRSGRMAAVCSVLTASAVFLSSCQSLFSPAYQSTLRPSDNPQTVEEVQKNDPRAQMGAREHPRIVASYGGEYRDAKTERLVARIAGALTAVSENPQQSYRITILNSPAINAFALPGGYLYVTRGLLALANDASEVAAVLSHEMGHVTANHGIERQRREEAEVIASRVVAEVLSSDLAGKQALARGKLRLAAFSRQQELQADVIGVRMLGEAGYDPFASPRFLDSMAAYARFSSADPENDQSLDFLSSHPNTPQRIELARRHARAFGQDGQVGDRGRDWFLDGIDGLLYGDSPQEGYVRGQTFLHGTLGIRFDVPEGFVIDNKVEAVLATGPGDVAIRFDGVADPKQTTLANYLTSGWVAGLMPETVKETQINGLEAATARATADKWDFDVTVIRVGQQIFRFLTAVPKGNTQLDSIANVLRTSFRKMTPQEIASLKPLRVRVVTVKPGETVATIAARMMGTDRKLDMFRMMNAMSATATLQPGQRVKIIAE
>NZ_CP011246.1|WP_038492451.1|2689322_2690039_-|ATP-binding-cassette-domain-containing-protein
MTGDEFAVGLDKVRLRLGTQDFDLDCTFPQGQMTAVVGASGSGKSTLLNLIAGFELPDSGRVLIGGRDMKALDPSERPVSSIFQDNNLFAHLDIFTNVALGISPGLKLRAEDRQRIDVALTRVGLAGFDKRLPGTLSGGERQRAALARALVRKKPVMLLDEPFAALDPGLRAGMTSLLLDLHAETKNTAIIVTHHPDDIKKLAQRVVFLDRGRVVYAGSTTDFFATQNVKAVDSFLNG
>NZ_CP011246.1|WP_046205573.1|2690035_2691661_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MMLRRDYRWSIIGGTAAFAAVFLFMALAVSALLSFDAGTSAAGIVDAYTLRILRFTLYQATLSTVLSIVLGLPVALALSRRQDFPGRIWIIRLMAVPMGLPVIVGAFGIITIWGRQGVLNIALVFAGAEQPFSIYGLSGILIAHVFFNLPLAVRLMLAGLERIPGEYWRMAASLGMGPVSVFRFIEWPAVSRLVPGIAGLVFMLCATSFTLVLLLGGGPAATTLEVAIYQALRFDFDPQRAIALSVLQIAITAVLLGLLAFLPSPEAEIASLGRPVRRFDGKRVGARLWDGAAIIFAVLLVGLPLVAITVSGLGADLPRLLSAPIFLRAAATSLAIAAFSATLVVLCCFAIIGARQAVGSKRHAAQPLRLLSATLGAGSSLVLLVPPVVLGSGWFLLLRPFGDVSFYAPVLVALINMLMALPLAMRVLEPAFTSHFLRTSRLSASLGLQGLTRLRFADLPVLRRPLLMAFSFAMALSLGDLGAVALFGSENFITLPWLVYSNMGSYRTNDAAGYAFILGVVCLLLAAGGVSRQSQSARASI
>NZ_CP011246.1|WP_038492457.1|2691680_2692694_-|thiamine-ABC-transporter-substrate-binding-subunit
MRRRLFLNSLVAVSLFLPGIATAQDRQELTVYTYESFVSEWGPGPKVKEAFEKVCNCTVNFVGVADGVALLNRLKLEGAGSKADVVVGLDTNLVAEAKQTGLFDISGIDASAAKVPGGYKDDIFVPYDYGHFAVVYDTQTIKNPPTSLKDLVDGDPSQKIAIQDPRTSTPGLGLLLWVKSVYGDKAPEAWAKLRKRILTVTPGWSESYGLFTKGEVPMVLSYTTSPAYHMVSEKTDRYQAAGFSEGHYIQIEVSGLLKNAPHKELAKQFLAFTLTSGFQDAIPENNWMMPVAATSTPLPEAFSKLVVPQKTFLMDPEEVAKNRKAWIDEWLAAMSMN
>NZ_CP011246.1|WP_003516574.1|2692888_2693281_-|VOC-family-protein
MRMIFVNLPVKNIETSRSFFTALGFTFNPEYSDDRTLCMIVEENIFVMLLQEERFRDFINGDIADATRSTEVLTCLTAGSREEIDRMIETALASGGSSWKPVQDHGFMYAGSFQDPDGHVWELVHMVQQA
>NZ_CP011246.1|WP_038492460.1|2693372_2695199_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MAPPILKLDDIKLTFGVTPLLDGANLQVEPGDRICLVGRNGSGKSTLMKIAAGLVEAQSGEVFRHPSATIRYLEQAPDFAGYDTVQAYAEAGLGPGDDPYRVTYILEHLGLTGQEHPDTLSGGEARRAALARVMAPEPDILMLDEPTNHLDLPTIEWLEGELQQTRSALVLISHDRRFLEKVSTSTVWLDRGQSRRLNRGFAHFEEWRDKVLEEEELEQHKLGKAIEREEHWMRYGVTARRKRNMRRVGELQAMRADYRGHKGPQGSVQATAAEVRESGKLVIEADAITKSYGERVIIAPFSLRVHRGDCIGLVGPNGAGKTTLLKMLTGQLQPDSGTVKLGTNLEIATLDQKREDLNPNDTLAHYLTDGRGDNLLVNGELKHVTGYMKDFLFQPEQARTPIRNLSGGERARLILARILARPTNLLILDEPTNDLDIETLDLLQEIVAGFSGTVILVSHDRDFLDRTVTSTIAPANPDQPDGRWIEYAGGYSDMMAQRKGAAEEKRKAEKQEKAKTAPSASASQDPSKAKGKLSFKQKFALENLPKEMEKAQGEIAKREQRMADPNLFTKDPATFNTLAQEMTKLREKLEAMEEEWLELEMLREEIEG
>NZ_CP011246.1|WP_038492463.1|2695203_2695857_-|thiamine-diphosphokinase
MDRERFTILLGGDVTVTDRLKAAVEGSRVIAADGGMRHAAPLGLTPELWVGDFDSTDKNLLDAWPDVVRQPYPAAKAVTDGEIAVSEALARGARSLVLAGALGGARSDHALQHLLYAVALTERGLNVTLTSGEEEARPLLAGSFDLDLPPGTLFSVAGFTDLVGLDIGNVRYPLKDFPLAFGSSRTISNVANGGPVHFSLKSGKAIVLARPYDLTGA
>NZ_CP011246.1|WP_003516567.1|2696106_2697033_+|homoserine-O-succinyltransferase
MPIKIPDTLPAFDTLVHEGVRVMTETAAIRQDIRPLQIGLLNLMPNKIKTEVQMARLVGASPLQVEFSLIRIGGHRAKNTPEEHLLSFYETWEEVRHRKFDGFIITGAPIEMLDYEDVTYWNEMQKIFDWTQTNVHSTLNVCWGAMAAIYHFHGVPKYELKEKAFGVYRHRNLCPSSIYLNGFSDDFQVPVSRWTEVRRADIEKHPELEILMESEEMGVCLVHEKEGNRLYMFNHVEYDSTSLSDEYFRDVNSGVPIKLPHDYFPHNDPELAPLNRWRSHAHLFFGNWINEIYQTTPYDLEAIGKLAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

898542 : 905290

Geobacillus_phage(33.33%)

portal,capsid,tail,head,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038490351.1\|898542_899709_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.3e-65	39.3
WP_003512100.1\|899896_900217_+	hypothetical protein	NA	NA	NA	NA
WP_038490354.1\|900258_900849_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.0e-27	43.4
WP_038490357.1\|900886_902155_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	4.2e-78	42.6
WP_019564079.1\|902267_902837_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_013635738.1\|902840_903176_+\|head	phage head closure protein	NA	NA	NA	NA
WP_038490360.1\|903172_903568_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_038490363.1\|903575_904775_-	MFS transporter	NA	NA	NA	NA
WP_003512111.1\|904882_905290_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA

DBSCAN-SWA_2

1421314 : 1448565

Agrobacterium_phage(80.95%)

capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003515249.1\|1421314_1421989_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.5e-37	42.2
WP_038491001.1\|1422126_1423299_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_038492811.1\|1423375_1424461_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	9.3e-18	50.0
WP_013636098.1\|1424780_1425119_+	hypothetical protein	NA	NA	NA	NA
WP_046205514.1\|1425367_1425598_-	AlpA family phage regulatory protein	A0A2L0V109	Agrobacterium_phage	3.7e-33	88.2
WP_046205515.1\|1425803_1426136_-	hypothetical protein	A0A223W041	Agrobacterium_phage	2.5e-54	98.2
WP_046205516.1\|1426135_1426660_-	hypothetical protein	A0A223W0D2	Agrobacterium_phage	8.0e-84	93.7
WP_052734396.1\|1426656_1427409_-	hypothetical protein	A0A223W052	Agrobacterium_phage	5.5e-86	85.6
WP_046205517.1\|1427557_1428655_+\|capsid	N4-gp56 family major capsid protein	A0A2L0V108	Agrobacterium_phage	3.9e-197	92.3
WP_046205518.1\|1428726_1429188_+	hypothetical protein	A0A223W0C1	Agrobacterium_phage	9.3e-68	87.6
WP_046205519.1\|1429250_1429709_+	hypothetical protein	A0A2L0V102	Agrobacterium_phage	1.3e-34	88.9
WP_046205520.1\|1429712_1430414_+	hypothetical protein	A0A223W0X8	Agrobacterium_phage	3.2e-120	91.8
WP_046205521.1\|1430413_1431040_+	hypothetical protein	A0A223W0Q1	Agrobacterium_phage	1.4e-106	90.9
WP_046205522.1\|1431039_1431456_+	hypothetical protein	Q8W6L7	Sinorhizobium_phage	1.4e-51	73.0
WP_046205523.1\|1431455_1431968_+	hypothetical protein	NA	NA	NA	NA
WP_052734406.1\|1431976_1432243_+	hypothetical protein	A0A223W037	Agrobacterium_phage	1.2e-32	76.1
WP_052734397.1\|1432242_1433283_+	hypothetical protein	A0A223W077	Agrobacterium_phage	2.2e-32	80.0
WP_052734398.1\|1433282_1433840_+	hypothetical protein	R9TP62	Rhizobium_phage	2.7e-21	46.5
WP_046205525.1\|1433860_1435600_+	hypothetical protein	A0A223W033	Agrobacterium_phage	1.4e-289	83.2
WP_046205526.1\|1435610_1435856_+	hypothetical protein	A0A2L0V0Z0	Agrobacterium_phage	3.1e-30	85.2
WP_052734399.1\|1435852_1436302_+	GNAT family N-acetyltransferase	A0A223W031	Agrobacterium_phage	5.6e-78	91.3
WP_046205528.1\|1436352_1437510_+\|tail	tail fiber domain-containing protein	A0A223W0C7	Agrobacterium_phage	3.7e-166	81.1
WP_046205529.1\|1437514_1438804_+	hypothetical protein	A0A223W044	Agrobacterium_phage	6.6e-172	75.1
WP_046205530.1\|1439025_1439523_-	hypothetical protein	NA	NA	NA	NA
WP_143242021.1\|1439519_1439807_-	hypothetical protein	NA	NA	NA	NA
WP_166701586.1\|1439955_1448565_-	PLxRFG domain-containing protein	A0A223W0B5	Agrobacterium_phage	0.0e+00	94.8

DBSCAN-SWA_3

1459073 : 1481485

Agrobacterium_phage(96.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046205535.1\|1459073_1459268_-	hypothetical protein	A0A2L0V0W4	Agrobacterium_phage	2.2e-26	93.8
WP_046205536.1\|1459276_1460254_-	hypothetical protein	A0A223W0D5	Agrobacterium_phage	3.9e-92	77.7
WP_046205537.1\|1460269_1462510_-	hypothetical protein	A0A223W028	Agrobacterium_phage	0.0e+00	89.0
WP_046205539.1\|1463004_1463433_-	hypothetical protein	A0A223W072	Agrobacterium_phage	8.0e-74	93.7
WP_046205540.1\|1463451_1465008_-	hypothetical protein	A0A223W022	Agrobacterium_phage	1.0e-291	95.8
WP_052734402.1\|1465007_1465814_-	hypothetical protein	A0A223W023	Agrobacterium_phage	5.7e-137	89.5
WP_046205541.1\|1465810_1466437_-	YdaU family protein	A0A223W0C2	Agrobacterium_phage	1.3e-88	80.8
WP_046205542.1\|1466433_1467180_-	NERD domain-containing protein	A0A2L0V113	Agrobacterium_phage	1.1e-107	80.7
WP_046205543.1\|1467176_1467392_-	hypothetical protein	A0A2L0V110	Agrobacterium_phage	3.8e-32	95.7
WP_046205596.1\|1467388_1467676_-	hypothetical protein	A0A2L0V0Z9	Agrobacterium_phage	3.4e-44	92.6
WP_046205544.1\|1467735_1468182_-	hypothetical protein	A0A2L0V0Z3	Agrobacterium_phage	5.8e-67	86.8
WP_046205545.1\|1468178_1468769_-	hypothetical protein	A0A2L0V0Z4	Agrobacterium_phage	3.2e-73	75.0
WP_046205597.1\|1468773_1469061_-	DUF2312 domain-containing protein	A0A2L0V115	Agrobacterium_phage	3.3e-39	90.5
WP_046205546.1\|1469150_1469567_-	hypothetical protein	A0A223W0W5	Agrobacterium_phage	1.5e-56	83.9
WP_046205547.1\|1469544_1469841_-	hypothetical protein	A0A2L0V104	Agrobacterium_phage	3.5e-44	92.9
WP_052734403.1\|1469841_1470480_-	hypothetical protein	A0A2L0V0Y0	Agrobacterium_phage	2.2e-43	92.7
WP_046205548.1\|1470476_1470731_-	hypothetical protein	A0A2L0V144	Agrobacterium_phage	2.5e-14	69.6
WP_046205549.1\|1470727_1470967_-	hypothetical protein	A0A2L0V139	Agrobacterium_phage	1.3e-33	93.7
WP_046205599.1\|1471054_1471360_+	helix-turn-helix transcriptional regulator	A0A2L0V128	Agrobacterium_phage	1.2e-47	97.0
WP_052734404.1\|1471524_1472214_+	hypothetical protein	A0A2L0V127	Agrobacterium_phage	5.4e-96	79.1
WP_046205550.1\|1472566_1472875_+	hypothetical protein	A0A223W091	Agrobacterium_phage	1.9e-48	85.3
WP_046205551.1\|1472871_1473159_+	hypothetical protein	A0A2L0V140	Agrobacterium_phage	3.9e-40	89.5
WP_046205552.1\|1473160_1473742_+	hypothetical protein	A0A2L0V136	Agrobacterium_phage	5.4e-105	90.7
WP_046205553.1\|1473731_1473950_+	hypothetical protein	A0A2L0V111	Agrobacterium_phage	3.0e-16	61.1
WP_046205554.1\|1473951_1474368_+	helix-turn-helix transcriptional regulator	A0A223W054	Agrobacterium_phage	6.2e-63	89.1
WP_143242027.1\|1474482_1475007_+	hypothetical protein	A0A2L0V0Y4	Agrobacterium_phage	4.8e-36	49.4
WP_046205556.1\|1475003_1475402_+	hypothetical protein	A0A223W0D7	Agrobacterium_phage	5.4e-64	88.6
WP_046205557.1\|1475394_1476102_+	hypothetical protein	A0A223W062	Agrobacterium_phage	3.2e-104	76.7
WP_046205558.1\|1476098_1476524_+	hypothetical protein	A0A2L0V129	Agrobacterium_phage	2.6e-72	91.5
WP_143242028.1\|1477740_1478427_+	hypothetical protein	NA	NA	NA	NA
WP_046205561.1\|1478845_1481485_-	ATP-binding protein	A0A1V0SHA7	Hokovirus	1.1e-08	33.3

DBSCAN-SWA_4

1671691 : 1680063

uncultured_Mediterranean_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003515587.1\|1671691_1673257_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	I3PV24	Clostridium_phage	1.4e-11	30.6
WP_029658770.1\|1673602_1674244_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1J0MC37	Streptomyces_phage	4.5e-12	36.0
WP_038491219.1\|1674252_1675023_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.0e-27	31.1
WP_038491222.1\|1675179_1676463_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	46.3
WP_003515595.1\|1676567_1677371_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	8.9e-42	41.2
WP_038491224.1\|1677367_1678087_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003515599.1\|1678141_1678348_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.1e-08	69.8
WP_038491227.1\|1678478_1679225_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.3e-39	47.1
WP_025593638.1\|1679214_1680063_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.3e-35	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage