CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP011520	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-3, complete sequence	0 crisprs	NA	0	1
NZ_CP011253	Pandoraea oxalativorans strain DSM 23570 chromosome, complete genome	0 crisprs	csa3,WYL,DEDDh,DinG,PD-DExK	0	14
NZ_CP011521	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-4, complete sequence	0 crisprs	NA	0	0
NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	2 crisprs	cas14i	2	6
NZ_CP011519	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-2, complete sequence	0 crisprs	NA	0	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30179 : 38581

Mycobacterium_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157123149.1\|30179_31043_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	3.8e-22	34.7
WP_052654047.1\|31403_31607_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	70.1
WP_157122856.1\|33141_34351_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7
WP_157122635.1\|35261_36349_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.1e-46	39.0
WP_046289886.1\|36758_37142_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	3.4e-07	34.4
WP_046290953.1\|37315_38581_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP011253

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

326966 : 334839

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046290475.1\|326966_328328_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L277	Tupanvirus	4.4e-33	38.6
WP_046290476.1\|328436_330266_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	2.4e-143	46.0
WP_046289972.1\|330418_331639_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6
WP_046290070.1\|331856_332453_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_046290069.1\|332464_334009_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	8.3e-137	48.5
WP_046290068.1\|334060_334408_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.1e-36	65.4
WP_052652849.1\|334404_334839_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	1.1e-06	31.6

DBSCAN-SWA_2

1003099 : 1046498

uncultured_Mediterranean_phage(23.08%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046289972.1\|1003099_1004320_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6
WP_046290931.1\|1004453_1005431_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	5.2e-44	36.3
WP_046290932.1\|1005455_1007348_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_039396304.1\|1007483_1007810_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	7.1e-14	47.8
WP_046290933.1\|1007984_1009115_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.4e-87	45.2
WP_046290934.1\|1009253_1010336_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_046290935.1\|1010464_1012795_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_046290936.1\|1012948_1013893_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	7.6e-08	23.5
WP_157122634.1\|1014070_1014235_+	hypothetical protein	NA	NA	NA	NA
WP_046290937.1\|1014301_1015750_+	catalase	A0A2K9L0T1	Tupanvirus	1.1e-101	48.2
WP_084009602.1\|1015847_1016528_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_046290938.1\|1016705_1017203_+	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	4.3e-18	34.8
WP_046290939.1\|1017366_1018191_+	YdcF family protein	NA	NA	NA	NA
WP_046290940.1\|1018333_1018741_+	heme-binding protein	NA	NA	NA	NA
WP_046290941.1\|1019202_1019457_-	hemin uptake protein HemP	NA	NA	NA	NA
WP_046290942.1\|1019644_1020121_-	DUF1857 family protein	NA	NA	NA	NA
WP_046290943.1\|1020189_1020600_-	OsmC family protein	NA	NA	NA	NA
WP_046290944.1\|1020845_1021742_-	pirin family protein	NA	NA	NA	NA
WP_046290945.1\|1022002_1022425_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_046290946.1\|1022452_1023190_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_052652950.1\|1023259_1023979_-	energy transducer TonB	NA	NA	NA	NA
WP_046290947.1\|1024336_1024600_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_084009603.1\|1024737_1025685_-	glutamate racemase	NA	NA	NA	NA
WP_039396360.1\|1025818_1026298_-	bacterioferritin	NA	NA	NA	NA
WP_046290948.1\|1026529_1028053_-	fumarate hydratase	NA	NA	NA	NA
WP_046290949.1\|1028116_1028686_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	2.3e-20	32.5
WP_046293414.1\|1028842_1029730_-	DMT family transporter	NA	NA	NA	NA
WP_046290950.1\|1030094_1032077_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	6.1e-84	43.4
WP_065225753.1\|1032418_1032880_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_046290951.1\|1032876_1034895_+	cation acetate symporter	NA	NA	NA	NA
WP_084009998.1\|1035578_1035893_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_052652954.1\|1035982_1036441_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_046289885.1\|1036437_1036785_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.3e-34	62.9
WP_046289884.1\|1036843_1038430_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.4e-142	52.0
WP_084009604.1\|1038461_1038638_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_157122635.1\|1038705_1039792_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_157122867.1\|1039978_1041112_-	MFS transporter	NA	NA	NA	NA
WP_157122635.1\|1041208_1042296_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_046293417.1\|1042434_1043118_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_157122856.1\|1043712_1044922_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7
WP_046290953.1\|1045232_1046498_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1

DBSCAN-SWA_3

1050345 : 1086589

Mycobacterium_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046290953.1\|1050345_1051611_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
WP_046290953.1\|1052380_1053646_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
WP_046290956.1\|1054320_1055106_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.4e-79	58.0
WP_046290957.1\|1055102_1056119_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.3e-74	45.5
WP_084009607.1\|1056530_1057472_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_157122635.1\|1057510_1058597_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_169834982.1\|1058787_1060023_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_046289963.1\|1060508_1061594_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_046293424.1\|1063916_1064843_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_046293425.1\|1065063_1065804_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_046290960.1\|1065813_1066449_+	flavin reductase family protein	NA	NA	NA	NA
WP_169834983.1\|1066926_1067154_+	hypothetical protein	NA	NA	NA	NA
WP_052652962.1\|1067386_1067950_+	hypothetical protein	NA	NA	NA	NA
WP_046290963.1\|1068033_1068315_-	XapX domain-containing protein	NA	NA	NA	NA
WP_046293426.1\|1068311_1068755_-	DoxX family protein	NA	NA	NA	NA
WP_046290964.1\|1068801_1070655_-	amidohydrolase	NA	NA	NA	NA
WP_046290965.1\|1070949_1071630_+	response regulator transcription factor	NA	NA	NA	NA
WP_046290966.1\|1071719_1072106_-	hypothetical protein	NA	NA	NA	NA
WP_052652964.1\|1072208_1072694_+	filamentous haemagglutinin family protein	NA	NA	NA	NA
WP_046289884.1\|1079204_1080791_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.4e-142	52.0
WP_046289885.1\|1080849_1081197_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.3e-34	62.9
WP_052654594.1\|1081193_1081652_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_046290953.1\|1081964_1083230_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
WP_157122637.1\|1083494_1085441_-	oligopeptide transporter, OPT family	NA	NA	NA	NA
WP_157122856.1\|1085379_1086589_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7

DBSCAN-SWA_4

1839139 : 1845245

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046291440.1\|1839139_1839940_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.4e-15	25.3
WP_046291441.1\|1839936_1840650_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.2e-11	24.2
WP_046291442.1\|1840760_1841168_-	hypothetical protein	NA	NA	NA	NA
WP_046291443.1\|1841312_1842752_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.1e-17	33.9
WP_046291444.1\|1842808_1843297_-	dihydrofolate reductase	A0A0A8JB64	Ralstonia_phage	1.3e-27	43.8
WP_046291445.1\|1843293_1844088_-	thymidylate synthase	A6M9A2	Geobacillus_virus	3.4e-110	68.6
WP_052653060.1\|1844147_1845245_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-24	35.9

DBSCAN-SWA_5

2094830 : 2103154

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046293611.1\|2094830_2095643_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.1e-29	36.8
WP_046291596.1\|2095817_2096636_+	ABC transporter permease	NA	NA	NA	NA
WP_046291597.1\|2096737_2097499_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.1e-68	51.0
WP_046291598.1\|2097495_2098683_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.0e-35	45.6
WP_084010027.1\|2098768_2099554_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	2.6e-09	36.4
WP_046291600.1\|2099571_2100669_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	4.7e-33	34.5
WP_039399083.1\|2100776_2101553_+	3'-5' exonuclease	NA	NA	NA	NA
WP_084010028.1\|2101672_2103154_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.6e-23	25.3

DBSCAN-SWA_6

2108776 : 2165425

Powai_lake_megavirus(12.5%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046291602.1\|2108776_2110153_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_046291603.1\|2110185_2110815_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_046293613.1\|2110919_2112107_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_046291604.1\|2112186_2113524_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_010807283.1\|2113650_2113887_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_046291605.1\|2113984_2115154_+	GTPase HflX	NA	NA	NA	NA
WP_169834995.1\|2115374_2116730_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_046291607.1\|2116742_2117642_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_052653116.1\|2117713_2117905_+	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_046291609.1\|2117943_2119104_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_046291610.1\|2119177_2120518_+	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	5.6e-73	36.4
WP_046291611.1\|2120544_2121081_+	phosphoribosyltransferase	NA	NA	NA	NA
WP_157122678.1\|2121151_2122006_+	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_046291613.1\|2122071_2124150_-	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	4.7e-50	26.6
WP_046291614.1\|2124503_2125355_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.0e-35	37.6
WP_046291615.1\|2125711_2126359_-	response regulator transcription factor	NA	NA	NA	NA
WP_052653118.1\|2126355_2128764_-	PAS domain S-box protein	NA	NA	NA	NA
WP_046291617.1\|2129181_2131869_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_046291618.1\|2131966_2133649_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
WP_046291619.1\|2133727_2134309_+	MFS transporter	NA	NA	NA	NA
WP_046291620.1\|2134329_2136126_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-32	23.9
WP_046291621.1\|2136396_2136957_-	phasin family protein	NA	NA	NA	NA
WP_046291622.1\|2137461_2138403_+	histone deacetylase	A0A2K9L2T7	Tupanvirus	8.9e-17	30.3
WP_084009693.1\|2138399_2139446_+	DMT family transporter	NA	NA	NA	NA
WP_046293614.1\|2139636_2140320_+	nitroreductase	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	1.3e-28	33.9
WP_046291624.1\|2140508_2141777_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_046291625.1\|2141923_2142751_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_157122679.1\|2143034_2143949_+	hypothetical protein	NA	NA	NA	NA
WP_046290551.1\|2144892_2146143_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.2e-40	43.7
WP_046291628.1\|2146632_2147193_+	hypothetical protein	NA	NA	NA	NA
WP_046291629.1\|2147294_2148020_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_046291630.1\|2148105_2149515_+	lactate utilization protein	NA	NA	NA	NA
WP_039399031.1\|2149624_2150284_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_046291631.1\|2150403_2151201_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_046291632.1\|2151252_2152281_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_046291633.1\|2152444_2153233_-	arginyltransferase	NA	NA	NA	NA
WP_046291634.1\|2153229_2153994_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_052653120.1\|2154071_2154704_-	NUDIX hydrolase	NA	NA	NA	NA
WP_046291635.1\|2155131_2155587_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046293617.1\|2155614_2155845_-	tautomerase family protein	NA	NA	NA	NA
WP_046291636.1\|2155881_2156802_-	DMT family transporter	NA	NA	NA	NA
WP_052653613.1\|2156899_2157670_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046291637.1\|2157875_2158760_-	EamA family transporter	NA	NA	NA	NA
WP_046291638.1\|2159050_2159272_-	hypothetical protein	NA	NA	NA	NA
WP_046290953.1\|2159776_2161042_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
WP_046290016.1\|2161908_2162892_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_046289963.1\|2164339_2165425_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2791569 : 2816933

Ralstonia_virus(50.0%)

plate,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046292000.1\|2791569_2795415_-\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_046292001.1\|2795475_2795919_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_046292002.1\|2795934_2796237_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_046292003.1\|2796280_2798071_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_046292004.1\|2798075_2798759_-	hypothetical protein	NA	NA	NA	NA
WP_046292005.1\|2798762_2798957_-	hypothetical protein	NA	NA	NA	NA
WP_052653264.1\|2798988_2799453_-\|tail	phage tail protein	NA	NA	NA	NA
WP_046292006.1\|2799605_2800064_-\|tail	phage tail protein	NA	NA	NA	NA
WP_046292007.1\|2800197_2801952_-\|tail	phage tail sheath family protein	A0A142EZL9	Stenotrophomonas_phage	1.4e-07	27.2
WP_046292008.1\|2801974_2802907_-	hypothetical protein	NA	NA	NA	NA
WP_046292009.1\|2802921_2803497_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_046289972.1\|2803835_2805056_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6
WP_084009753.1\|2805142_2806879_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.3e-13	26.1
WP_157122707.1\|2807043_2810310_-	hypothetical protein	NA	NA	NA	NA
WP_084009754.1\|2810670_2813355_-	penicillin acylase family protein	NA	NA	NA	NA
WP_046292011.1\|2813573_2814596_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_046292012.1\|2814620_2815562_-	serine acetyltransferase	NA	NA	NA	NA
WP_046289972.1\|2815712_2816933_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6

DBSCAN-SWA_8

3355597 : 3415914

Stx2-converting_phage(23.08%)

tRNA,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046292340.1\|3355597_3356473_-\|holin	phosphatidylcholine/phosphatidylserine synthase	NA	NA	NA	NA
WP_039397633.1\|3356694_3357330_-	phosphatidylserine decarboxylase	A0A1V0SDU9	Indivirus	1.4e-13	31.9
WP_039397631.1\|3357539_3358556_-	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_039397629.1\|3358633_3359125_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_046292341.1\|3359215_3360985_-	acetolactate synthase 3 catalytic subunit	NA	NA	NA	NA
WP_046292342.1\|3361432_3362005_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_046292343.1\|3362001_3362430_+	DUF3619 family protein	NA	NA	NA	NA
WP_046292344.1\|3362452_3363304_+	DUF3106 domain-containing protein	NA	NA	NA	NA
WP_084009808.1\|3363505_3364117_+	RDD family protein	NA	NA	NA	NA
WP_052653397.1\|3364315_3365071_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_046292345.1\|3365197_3366196_+	UDP-2,3-diacylglucosamine diphosphatase	A0A218MKA7	uncultured_virus	3.2e-65	46.0
WP_046292346.1\|3366324_3367359_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_046292347.1\|3367401_3367836_+	diacylglycerol kinase	NA	NA	NA	NA
WP_046292348.1\|3367977_3368646_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_046292349.1\|3368649_3369246_+	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_169835013.1\|3369556_3370117_+	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_046292350.1\|3370148_3370769_-	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	2.2e-19	35.1
WP_046292351.1\|3370815_3371547_-\|tRNA	alanyl-tRNA editing protein	NA	NA	NA	NA
WP_157122740.1\|3371750_3372332_+	hypothetical protein	NA	NA	NA	NA
WP_046292354.1\|3372734_3373217_+	hypothetical protein	NA	NA	NA	NA
WP_084009809.1\|3373243_3373699_-	group II truncated hemoglobin	NA	NA	NA	NA
WP_046292355.1\|3373800_3376314_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_084010046.1\|3376336_3376975_-	DUF4126 domain-containing protein	NA	NA	NA	NA
WP_039397603.1\|3377262_3377580_-	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_046292356.1\|3377753_3378464_-	two-component system response regulator KdpE	Q56AR1	Bacillus_thuringiensis_phage	2.0e-05	28.7
WP_046293838.1\|3378456_3381285_-	sensor histidine kinase KdpD	A0A1V0SGX0	Hokovirus	2.4e-09	23.9
WP_046292357.1\|3381477_3382062_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_046292358.1\|3382141_3384232_-	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	6.6e-28	25.7
WP_046292359.1\|3384296_3386102_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_063389843.1\|3386098_3386191_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_052653664.1\|3386549_3387422_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_157122741.1\|3387616_3388189_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_157122742.1\|3388201_3388624_-	hypothetical protein	NA	NA	NA	NA
WP_052653405.1\|3389462_3389858_-	DUF861 domain-containing protein	NA	NA	NA	NA
WP_046293841.1\|3389910_3390762_-	thioredoxin	NA	NA	NA	NA
WP_052653407.1\|3390875_3393338_+	cation:proton antiporter	NA	NA	NA	NA
WP_046293842.1\|3393447_3394347_-	pirin family protein	NA	NA	NA	NA
WP_046292361.1\|3394564_3395125_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_046292362.1\|3395199_3397611_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A291L9W9	Bordetella_phage	2.6e-12	31.8
WP_039397582.1\|3397671_3397878_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_046292363.1\|3397968_3398646_-	guanylate kinase	A0A0M5KCK5	Mollivirus	1.3e-09	28.8
WP_046292364.1\|3398651_3399581_-	YicC family protein	NA	NA	NA	NA
WP_046292365.1\|3399793_3400522_+	ribonuclease PH	NA	NA	NA	NA
WP_046292366.1\|3400524_3401142_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_046292367.1\|3401147_3402368_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA
WP_046293843.1\|3402543_3404166_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	2.0e-69	33.8
WP_046292368.1\|3405000_3405504_-	hypothetical protein	NA	NA	NA	NA
WP_046292369.1\|3405743_3406340_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_046292370.1\|3406351_3407896_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.2e-135	48.3
WP_046292371.1\|3407947_3408106_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_157122635.1\|3408147_3409235_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_084009810.1\|3409273_3409492_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.9e-18	62.1
WP_052652849.1\|3409488_3409923_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	1.1e-06	31.6
WP_084009811.1\|3410016_3410865_-	caspase family protein	NA	NA	NA	NA
WP_046292373.1\|3411780_3413046_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.9e-103	50.1
WP_046292375.1\|3413763_3414135_-	TIR domain-containing protein	NA	NA	NA	NA
WP_046289963.1\|3414828_3415914_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

3573603 : 3731687

120

Bacillus_phage(14.81%)

tRNA,integrase,transposase,protease

attL 3641635:3641694|attR 3733011:3734354

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052653453.1\|3573603_3575433_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_046292454.1\|3575536_3576208_+	DUF1345 domain-containing protein	NA	NA	NA	NA
WP_046292455.1\|3576466_3577855_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_046292456.1\|3577845_3578844_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_052653456.1\|3578827_3579037_+	hypothetical protein	NA	NA	NA	NA
WP_046292457.1\|3579098_3579653_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_046292458.1\|3579773_3580340_-	GTP cyclohydrolase I FolE	A0A172Q012	Pseudomonas_phage	1.3e-60	61.7
WP_046292459.1\|3580713_3581658_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046292460.1\|3581830_3582250_+	VOC family protein	NA	NA	NA	NA
WP_046292461.1\|3582369_3583074_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_046292462.1\|3583737_3585240_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_046292463.1\|3585333_3586884_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_046293880.1\|3587090_3587885_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	5.2e-18	26.5
WP_046292464.1\|3588046_3588550_-	hypothetical protein	NA	NA	NA	NA
WP_046292465.1\|3589050_3590202_+	glycerate kinase	W6LM47	Streptococcus_phage	4.4e-26	38.1
WP_046292466.1\|3590368_3591826_-	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA	NA	NA	NA
WP_046292467.1\|3591875_3593072_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_046292468.1\|3593083_3595684_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_046292469.1\|3595712_3596864_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_046293881.1\|3596891_3597770_-	methylisocitrate lyase	NA	NA	NA	NA
WP_157122752.1\|3598071_3598212_-	hypothetical protein	NA	NA	NA	NA
WP_046293882.1\|3598180_3600196_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
WP_157122753.1\|3600228_3600390_-	hypothetical protein	NA	NA	NA	NA
WP_046292470.1\|3600530_3601751_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	1.1e-195	81.9
WP_046292471.1\|3601857_3602658_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046293885.1\|3604272_3605220_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_046292472.1\|3605448_3606276_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_046292473.1\|3606364_3607321_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046292474.1\|3607594_3608941_+	MFS transporter	NA	NA	NA	NA
WP_046292475.1\|3608937_3609726_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_046292476.1\|3609779_3611525_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_046292477.1\|3611521_3612412_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_084010050.1\|3612502_3614152_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_157122755.1\|3614302_3615187_-	hypothetical protein	NA	NA	NA	NA
WP_084009824.1\|3615446_3616349_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_157122910.1\|3616656_3618948_+	cytochrome P450	NA	NA	NA	NA
WP_046292481.1\|3618999_3620214_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_046292482.1\|3620399_3621767_-	MFS transporter	NA	NA	NA	NA
WP_046292483.1\|3622345_3623044_+	hypothetical protein	NA	NA	NA	NA
WP_046292484.1\|3623178_3623493_-	hypothetical protein	NA	NA	NA	NA
WP_084009825.1\|3623670_3625266_-	EAL domain-containing protein	NA	NA	NA	NA
WP_046292486.1\|3625482_3625800_+	hypothetical protein	NA	NA	NA	NA
WP_046292487.1\|3625801_3626704_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046292488.1\|3626908_3628405_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_046292489.1\|3628646_3630242_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.5e-13	27.9
WP_046292490.1\|3630473_3630830_-	GFA family protein	NA	NA	NA	NA
WP_046292491.1\|3631040_3632921_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.0e-11	28.0
WP_157122756.1\|3633225_3634584_+	hypothetical protein	NA	NA	NA	NA
WP_046292493.1\|3635215_3636118_+	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_046292494.1\|3636241_3637258_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046292495.1\|3637341_3637821_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_046292496.1\|3637951_3638842_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_046292497.1\|3639021_3639777_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_046292498.1\|3640000_3640198_+	hypothetical protein	NA	NA	NA	NA
WP_157122757.1\|3640602_3641647_+\|transposase	IS3 family transposase	NA	NA	NA	NA
3641635:3641694	attL	NA	NA	NA	NA
WP_046290551.1\|3641687_3642938_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.2e-40	43.7
WP_084010051.1\|3644202_3644577_-	hypothetical protein	NA	NA	NA	NA
WP_046290551.1\|3644921_3646172_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.2e-40	43.7
WP_046292502.1\|3647810_3648302_+	hypothetical protein	NA	NA	NA	NA
WP_046292470.1\|3648557_3649778_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	1.1e-195	81.9
WP_157122635.1\|3650621_3651709_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_157122758.1\|3652046_3652325_+	hypothetical protein	NA	NA	NA	NA
WP_169835059.1\|3652363_3653200_-	hypothetical protein	NA	NA	NA	NA
WP_046292506.1\|3653277_3653490_+	hypothetical protein	NA	NA	NA	NA
WP_157122759.1\|3653988_3655226_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.2e-146	88.7
WP_052653462.1\|3658006_3658495_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_046289972.1\|3659143_3660364_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6
WP_046290953.1\|3660545_3661811_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
WP_046293183.1\|3664704_3665727_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_046290067.1\|3666098_3667364_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.9e-103	49.9
WP_157122911.1\|3667499_3668709_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7
WP_044453167.1\|3668834_3669656_-	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	1.0e-08	30.1
WP_044458677.1\|3669652_3671146_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_084009826.1\|3672685_3675085_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	31.2
WP_157122760.1\|3675068_3675383_+	hypothetical protein	NA	NA	NA	NA
WP_046292514.1\|3675403_3677287_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.2e-66	39.8
WP_046292515.1\|3677356_3677803_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.7e-22	47.3
WP_046293889.1\|3678273_3679530_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_046292516.1\|3679620_3680652_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.9e-92	53.1
WP_046292517.1\|3680764_3681574_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_046292518.1\|3681773_3683690_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_046292519.1\|3683938_3684835_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_046292520.1\|3684956_3685229_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_046292521.1\|3685457_3686573_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_046292522.1\|3686853_3687708_+	DMT family transporter	NA	NA	NA	NA
WP_046292523.1\|3687750_3688635_+	sulfurtransferase	NA	NA	NA	NA
WP_084009827.1\|3688705_3689632_-	ZIP family metal transporter	NA	NA	NA	NA
WP_046292524.1\|3689756_3690632_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_046293891.1\|3690809_3692174_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_046292525.1\|3692380_3695119_-	DNA polymerase I	A0A218MKQ4	uncultured_virus	9.4e-75	32.0
WP_046292526.1\|3695119_3695854_+	TIGR00730 family Rossman fold protein	A0A1D8KUT5	Synechococcus_phage	3.1e-25	36.1
WP_046292527.1\|3695960_3697193_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_157122762.1\|3697551_3697920_+	hypothetical protein	NA	NA	NA	NA
WP_046292528.1\|3698063_3699035_+	homoserine kinase	NA	NA	NA	NA
WP_046292529.1\|3699066_3699879_+	hypothetical protein	NA	NA	NA	NA
WP_046292530.1\|3699951_3702270_-	UvrD-helicase domain-containing protein	S5M596	Bacillus_phage	9.4e-76	31.1
WP_046292531.1\|3702380_3705242_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.2e-144	40.2
WP_046292532.1\|3705271_3706159_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	9.2e-72	47.7
WP_039402727.1\|3706278_3706506_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_046292533.1\|3706634_3707165_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_052653673.1\|3707417_3708725_+	chloride channel protein	NA	NA	NA	NA
WP_046293894.1\|3708751_3709816_-	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_046292534.1\|3709967_3710162_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_046292535.1\|3710276_3711047_-	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_046292536.1\|3711104_3712358_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_046292537.1\|3712576_3715201_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.4e-80	39.8
WP_046292538.1\|3715509_3716733_+	CoA transferase	NA	NA	NA	NA
WP_084010052.1\|3718173_3718428_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_046292539.1\|3718424_3718760_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_052653466.1\|3718982_3719684_-	hypothetical protein	NA	NA	NA	NA
WP_046293183.1\|3720124_3721147_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044453167.1\|3721473_3722295_-	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	1.0e-08	30.1
WP_044458677.1\|3722291_3723785_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_046289963.1\|3724293_3725379_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_052652582.1\|3726709_3727213_+\|transposase	transposase	NA	NA	NA	NA
WP_084009760.1\|3727209_3727884_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046289963.1\|3728122_3729208_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_169835004.1\|3729251_3729680_+\|transposase	transposase	NA	NA	NA	NA
WP_046290016.1\|3729904_3730888_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_084010053.1\|3731171_3731687_-\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	2.0e-34	47.7
3733011:3734354	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4225945 : 4236398

Synechococcus_phage(33.33%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046292830.1\|4225945_4226491_+\|tail	phage tail protein	NA	NA	NA	NA
WP_046292831.1\|4226500_4227034_+\|tail	phage tail protein	F5B3N6	Synechococcus_phage	1.3e-09	55.6
WP_046292832.1\|4227054_4227573_+\|tail	phage tail protein	A0A2R3ZZT3	Microbacterium_phage	4.9e-17	37.9
WP_046292833.1\|4227717_4228128_-	hypothetical protein	NA	NA	NA	NA
WP_046292834.1\|4228353_4228695_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_046292835.1\|4228783_4229065_-	hypothetical protein	NA	NA	NA	NA
WP_084009864.1\|4229036_4229564_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_084009865.1\|4229610_4229784_-	hypothetical protein	NA	NA	NA	NA
WP_046289961.1\|4229838_4230822_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_046289963.1\|4233956_4235042_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_046291943.1\|4235132_4236398_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	9.9e-104	50.1

DBSCAN-SWA_11

4308673 : 4318171

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046292888.1\|4308673_4309711_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.8e-06	45.8
WP_046292889.1\|4309811_4311065_+	cation transporter	NA	NA	NA	NA
WP_046292890.1\|4311190_4311739_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.2e-47	53.1
WP_046292891.1\|4311780_4312668_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.6e-100	60.3
WP_046292892.1\|4312675_4313740_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.1e-83	47.1
WP_046293995.1\|4313768_4314353_-	peroxidase-related enzyme	NA	NA	NA	NA
WP_046292893.1\|4314450_4316199_-	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	4.5e-54	29.4
WP_046292894.1\|4316362_4318171_+	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.6e-75	35.5

DBSCAN-SWA_12

5099751 : 5126425

Cronobacter_phage(50.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046289955.1\|5099751_5100171_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_046289956.1\|5100167_5102930_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	6.8e-89	32.4
WP_046289957.1\|5103031_5103529_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_052653519.1\|5103617_5105276_-	OmpA family protein	NA	NA	NA	NA
WP_084010087.1\|5105302_5106004_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_046289959.1\|5106090_5107443_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_157122819.1\|5107476_5107848_+	hypothetical protein	NA	NA	NA	NA
WP_046289960.1\|5107859_5108372_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_046289961.1\|5108641_5109625_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_046289963.1\|5111072_5112158_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_052652696.1\|5112631_5114647_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_046289966.1\|5116343_5116631_+	hypothetical protein	NA	NA	NA	NA
WP_084009935.1\|5116633_5116891_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_046289967.1\|5116894_5118160_+	hypothetical protein	NA	NA	NA	NA
WP_157122856.1\|5118294_5119505_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7
WP_084009936.1\|5119515_5122998_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_046289968.1\|5122997_5124596_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_046289969.1\|5124607_5126425_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_13

5273963 : 5284875

Stx2-converting_phage(60.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046289963.1\|5273963_5275049_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044458677.1\|5276665_5278159_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_044453167.1\|5278155_5278977_+	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	1.0e-08	30.1
WP_046293183.1\|5279303_5280326_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157122825.1\|5281061_5281391_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	8.5e-07	37.6
WP_046290067.1\|5281397_5282663_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.9e-103	49.9
WP_046290068.1\|5282931_5283279_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.1e-36	65.4
WP_046290069.1\|5283330_5284875_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	8.3e-137	48.5

DBSCAN-SWA_14

5535160 : 5589386

Burkholderia_virus(22.22%)

tRNA,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046290217.1\|5535160_5537152_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_046290218.1\|5538806_5539553_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.1e-09	26.9
WP_052652778.1\|5539552_5541349_-	branched-chain amino acid ABC transporter ATP-binding protein/permease	A0A1M7XV31	Cedratvirus	2.7e-14	28.8
WP_039394135.1\|5541367_5542423_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_039394138.1\|5542624_5543122_-	homoprotocatechuate degradation operon regulator HpaR	NA	NA	NA	NA
WP_039394141.1\|5543379_5544525_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046290219.1\|5544685_5545468_-	TSUP family transporter	NA	NA	NA	NA
WP_046290220.1\|5546050_5547049_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_046290221.1\|5547060_5547945_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_046293226.1\|5548041_5549235_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039394148.1\|5549311_5550085_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_046290222.1\|5550093_5550873_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.2e-12	23.5
WP_046293227.1\|5551529_5552306_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_084009966.1\|5552312_5553530_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_046290224.1\|5553526_5554366_+	hypothetical protein	NA	NA	NA	NA
WP_046290225.1\|5554412_5556062_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	7.4e-59	31.4
WP_046290226.1\|5556197_5557706_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_046290227.1\|5557877_5558753_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046290228.1\|5559004_5560381_+	class II fumarate hydratase	NA	NA	NA	NA
WP_046290229.1\|5560418_5561315_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	3.4e-82	48.8
WP_046290230.1\|5561552_5562842_+	MFS transporter	Q6JIH2	Burkholderia_virus	3.1e-129	56.2
WP_157122839.1\|5564328_5565519_+	hypothetical protein	NA	NA	NA	NA
WP_046290233.1\|5565999_5567040_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_046289972.1\|5567945_5569166_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6
WP_084009967.1\|5569181_5569766_+	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_157122635.1\|5569804_5570891_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_084009968.1\|5570938_5572186_+	hypothetical protein	Q58MH7	Prochlorococcus_phage	6.9e-25	33.6
WP_046290236.1\|5572210_5572999_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	6.7e-34	36.6
WP_084009969.1\|5574822_5575608_+	MFS transporter	NA	NA	NA	NA
WP_046289961.1\|5575510_5576494_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_046289963.1\|5577941_5579027_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157122840.1\|5579421_5579946_+	MFS transporter	NA	NA	NA	NA
WP_046293231.1\|5580100_5583706_-	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA
WP_039394177.1\|5583946_5584408_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_084010094.1\|5584744_5587168_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_046290016.1\|5588402_5589386_-\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP011518

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011518_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011518_1

421596-421746

Orphan

Consensus_repeat	Method
GACACCGCCAGGATCGAGCCCATTCGATAACCGCCAAGCACCGGCGCGTCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011518_1

>merge|NZ_CP011518|1|421596-421746|CRISPRCasFinder
GACACCGCCAGGATCGAGCCCATTCGATAACCGCCAAGCACCGGCGCGTCAACTACCGCTTCTACGGTACACATCGAGTGCTTACGCAGCAACTTCCTGACACCGCCAGGATCGAACCCATTCGATAACCGCCAAGCACCGGCGCGTCAAC

>NZ_CP011518|1|1|421596-421746|CRISPRCasFinder
GACACCGCCAGGATCGAGCCCATTCGATAACCGCCAAGCACCGGCGCGTCAAC	TACCGCTTCTACGGTACACATCGAGTGCTTACGCAGCAACTTCCT
GACACCGCCAGGATCGAACCCATTCGATAACCGCCAAGCACCGGCGCGTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011518.2\|WP_052653856.1\|415464_416775_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011518.2\|WP_052653874.1\|426671_427019_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP011518.2\|WP_169835070.1\|427003_427309_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011518.2\|WP_046290068.1\|410730_411078_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP011518.2\|WP_046289963.1\|417620_418706_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP011518.2\|WP_046290070.1\|408526_409123_-\|plasmid-pRiA4b-ORF-3-family-protein	unknown	unknown	gnl\|CDD\|377943
NZ_CP011518.2\|WP_052652582.1\|419615_420119_-\|transposase	unknown	unknown	unknown
NZ_CP011518.2\|WP_052652849.1\|411074_411509_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP011518.2\|WP_157123044.1\|411556_412923_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011518.2\|WP_052653880.1\|429467_429773_-\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|237303
NZ_CP011518.2\|WP_084009760.1\|418944_419619_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|366234
NZ_CP011518.2\|WP_084010134.1\|431150_431723_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237322
NZ_CP011518.2\|WP_157123046.1\|413256_414606_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011518.2\|WP_052653883.1\|429790_430093_-\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913
NZ_CP011518.2\|WP_052654607.1\|430114_430939_-\|urease-accessory-protein-UreD	unknown	unknown	gnl\|CDD\|223899
NZ_CP011518.2\|WP_052653877.1\|427755_429459_-\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
NZ_CP011518.2\|WP_052653871.1\|425028_426615_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP011518.2\|WP_157123052.1\|427246_427417_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP011518.2\|WP_046290069.1\|409134_410679_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP011518.2\|WP_157123050.1\|422526_424752_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011518.2\|WP_046290070.1\|408526_409123_-\|plasmid-pRiA4b-ORF-3-family-protein	gnl\|CDD\|377943	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein. Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumorigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases, but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.	1.18808e-86
NZ_CP011518.2\|WP_052653874.1\|426671_427019_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	3.13492e-51
NZ_CP011518.2\|WP_084010134.1\|431150_431723_+\|hypothetical-protein	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	1.42947e-36
NZ_CP011518.2\|WP_046290068.1\|410730_411078_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.57433e-58
NZ_CP011518.2\|WP_046289963.1\|417620_418706_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.30584e-15
NZ_CP011518.2\|WP_052652849.1\|411074_411509_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.33429e-06
NZ_CP011518.2\|WP_157123044.1\|411556_412923_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.16407e-48
NZ_CP011518.2\|WP_052653880.1\|429467_429773_-\|urease-subunit-beta	gnl\|CDD\|237303	PRK13203, ureB, urease subunit beta; Reviewed.	5.99252e-68
NZ_CP011518.2\|WP_084009760.1\|418944_419619_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.41074e-11
NZ_CP011518.2\|WP_052653883.1\|429790_430093_-\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	9.17096e-68
NZ_CP011518.2\|WP_046290069.1\|409134_410679_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.33101e-130
NZ_CP011518.2\|WP_052653877.1\|427755_429459_-\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
NZ_CP011518.2\|WP_052654607.1\|430114_430939_-\|urease-accessory-protein-UreD	gnl\|CDD\|223899	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones].	4.62668e-73
NZ_CP011518.2\|WP_157123052.1\|427246_427417_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	8.54793e-08
NZ_CP011518.2\|WP_052653871.1\|425028_426615_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.59654e-104

>NZ_CP011518.2|WP_052652582.1|419615_420119_-|transposase
MKVKQTYSVEFKEQALSKVLRRGSRTVGAVADELNVNVLTLRKWMRGAAAANRSSGSAHAKRPEDWSLEERLMALQESHGLVDEALHGWCRERGLFAHHLAQWRAQFCAAGRNGDSRRESAQEVRVLKQANVELQRELKRKEKALAEAAALLVLQKKYRALLGDEAE
>NZ_CP011518.2|WP_084009760.1|418944_419619_-|helix-turn-helix-domain-containing-protein
MTSSEQRKVLIGLITEATRAGARQARACVILGLSARTVQRWQRGEPDAVDRRTLRHHEPRHKLSAEERAELLAVANSAELGHLPPSQIVPRLADQQRYIASESTFYRVLKAEKQLAHRRSERPAQAHSKPRAVCARAPNQLYSWDITYLPSTVRGQYFYLYLFLDVFSRKIVGWQVYAQESSALASEVLKDLCAREAIPPDQVILHSDSKNTGIRCFRASRGFQ
>NZ_CP011518.2|WP_046289963.1|417620_418706_-|IS110-family-transposase
MKEEPAISGYRNVVGGVDTHKDVHVAAVVDEHDRLLGSECFPTTRHGYKQMLLWMRSFGELARVGVECTGSYGAGLLRYLQLAHVTVLEVTAPDRSDRRKRGKDDTLDACNAAHAAFAGVRTVTPKTRDGMIESLRVLKVCRKTAISARRVALQLIHSTIISAPDELRESLRKMTRMQLIRTLAAWRPDLSDYRSLISANRIALKSLGRRYLELHDEIADLDVMIAALVDELAPDLVSRYSIGYESASQLLLTAGDNSDRLQSEASFAALCGVSPVPASSGKVTRHRLNRGGDRAANSALHIIAIGRLRTDDRTKAYVAKRVSEGHSKLEAIRCLKRYIAREVFYAIRQRYRQIAQTQFTS
>NZ_CP011518.2|WP_052653856.1|415464_416775_+|hypothetical-protein
MFDEVSAISISPASQVTATNENINRVTLGNDEAYFLAMNFKSLASRLYPPFEALPTGSDRYFDDIVDLPESIKNIRVGYRYIYIVDPMLAYKDSYKPSRLFGEKMFDDWRGTKNTESFCAGMNYASSQRFDVGNFDCIKEIYRRVGYNAKLCVPAQTRDFLVVPVSAESCGAKYSVMKRYKEGSICFNMADRTLNIKQPGDVFRGYQFKAGIGEIEKKEFIDSLKTTDRLVAPEKLAYLFEYIKYSLPDGERNNYVSASYGPGYAQMYFPKQEYPSGFPLGSRPTIEEMEFMHSFLGKNDAGYFRSYQTNYQNEAQITKLYEAAFKKYLIANLKNIADPDEQIALISGFASTMVHLHFFNDKNNRIWTQILLNHLLRSCGLSDSILAVPNGFAHAIRYCWIKGGAPAPGTPEYIEVMRPAISAIRDGMAYYRSVCA
>NZ_CP011518.2|WP_157123046.1|413256_414606_+|hypothetical-protein
MFTSMNVGGYKSIYQKQDPNDEASSIGCTNTAHLYFHDGDSSTEEKIQKADSCKINPGFYSLNVDSDVATAKIAETIEGNIKSFLKKNPECKCVNVKFHSFDNDSPARVSAIKEIVIKKFADTDIEIKPADKKISYKSLNNSRFRNRMIRYVGELNKKNNLRYEDEFLTSNGANRKAGNFKNLCEENRKIYKIYQDVLSKEIEGMRQRIEEDGSIAYIYEGKDLSGALNKLIAHDPFVLDCTLFVNLCMTLSLRDELGDERLNELLSSKLGGKFSLDASDVNKLLEEIGLKIAVKSVNQMNKGDILYIEAVNARVFHPTATMNSHNLVCIGKNPAADHQLMFQGFERMEPSTLADLKEFIVTLAKCNLTYADLLTMHSNSKFDDVLEGEEFSCKQAWEEIVNKNGREVVSNELDFIKDRDMRGIYDDSRIEMPDVLIFPDMNVVGVMEI
>NZ_CP011518.2|WP_157123044.1|411556_412923_+|IS3-family-transposase
MGKYTDQAKLAAVRDYCSGEAGLKAVAQRHSVNVSSLRQWIAGYRAHGEEGVRTKKRIPTNFSAEFKLSVLKRMREEGLSQRQTAALFNIRRFNVIGEWEDKFNQGGPKALGRVPRERRKTMSKASSDQAKQPNSDHDRSRQDLIDELKSLRMENAYPKKARGLGSGECSATAKERTLIVLELRQHYPLAGLLQLAGLARSTFYYQQRTLQRNDKYADLKLKIRELFDRHKGRYGYRRITAAVRRGGDLVNHKTVRRLMVQLQLRCRVRVKKYRSYKGQLGHVAPNDLARQFYANRPNEKWVTDVTEFNVGGRKLYLSPVLDLFNGEIVSYEMSSRPLFGMVGGMLKKAFSRLKVDDRPMLHSDQGWQYKMPEYRRLLDAHAAKQSMSRKGNCLDNAAMESFFGTLKSELYYLETFRSVEELQAGIDHYIRYYNHDRIKLKLKGLSPVEYRIRFA
>NZ_CP011518.2|WP_052652849.1|411074_411509_-|transposase
MVGTTLDTRNVKPSNRKGRPNYTPEYRRQVAVAACEPGISVAKLAQVHGLNSNMVFKWRRQLRAGLFEGTGHSTAVLLPVALPDAPSGERAEPVSPALQSVEPHRESVPAASGIEIELNGARVRVTGMVDPVQLRLVLRCLMPA
>NZ_CP011518.2|WP_046290068.1|410730_411078_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIAPPSGTRVWLAAGITDMRRGMDGLAALVQSALGRDPFSGHIFLFRGRRGDLIKILWWSGDGMNLYAKRLERGRFVWPQADSGTVHLSAAQLSMLLEGIDWRHPERTWQPTHAA
>NZ_CP011518.2|WP_046290069.1|409134_410679_-|IS66-family-transposase
MPASHLPDDIPALKRIVASRDETIAQLLAEISRLKRWQYGRSSERMTELMDQLQLALGELPAAESAMTATSKVPDADTAADTSATTNVVPLRRKSRHFPAHLPRETVVHAPSNCGCPECGKQMRALGEDVSEVLDYVPGYFKVLRHVRPKLSCPRCAAVVQEPAPSRPIARSMAGAGLLAQVVVAKYADHTPLYRQAGIYRRAGIELDRATLASWVREAAALLQPLSDALGRYVRDADKIHTDDTPMPVLEPGRGKTRTARLWTYVRDDRPAGSRAPPAVWYRYSPDRKGERPREHLAGYTGILQADAFSGYDALYRDGTVIEAGCWAHARRKFYDLYKLDSSPIAEEALRRIGALYVVEREVRGQTPDVRLSARQQRSAPLLTELKAWLEHSLSQVSTKSGLAKAIRYSLGHWHALTHYCEDGRVEVDNNTAERAIRPLVLGRRNYLFAGSDGGGESAAVIYSLIGTARLNGFDPFAYLRTVFERIADHPINRIDELLPWSLMSAEHVEQHAA
>NZ_CP011518.2|WP_046290070.1|408526_409123_-|plasmid-pRiA4b-ORF-3-family-protein
MVHPLRPAVRRVKAPVPDYVLRVELKYIKPAIWRRIIVPGSIRLGKLHVVLLLAMGWEGGHLHEFVFGETNYGEPDDFGFESDPPMLNEARVTLAKALGGLKSFTYVYDYGDNWQHRIKVEKALTPDPDMRRPLCLDGQNACPPEDVGGVPGYADFLEAITDPTHEEHDHFLERCGGSFDPAAFDLVLTNQRLSEVKL
>NZ_CP011518.2|WP_157123050.1|422526_424752_-|hypothetical-protein
MRKTISGSEILYPNYNNYDGLNLVKNSKLSAKDFDCIIDPDKQAAYESGMKACQELKKIIINKLSNKEGLTEQEKTNISACIETYGHAMEIMEAYAEKTKRRCDLLTEFGGITHLILEAPDEFLFSIDVVDLFVFVKSLFELGNISGKYPLDKSSDMVAILGKRMDEQYIDDSIRKRMEPHSKKIKTATASFLKTAFKFEIDHYFSEMVRQYPTGSAPEKIYSRLRAYGDLFSSPADKEDSVTDEIRVKRFEYKILPLAFDEHKLQAYFEKNKITINKEIMVWIYVFSHCLQQGDSAESITKNLKLAIEIMIKYCDYYFEETYWHQKDEILLNRANKAYLFRLKEFLEKNISIMFDVKNQSINGAVNPDLKIDEDSFLSLINGKIHENAVVAWEEFLLSQNNALASENNGSEDVNDDQENVASRENRTIVNIDFILPEHIYSLEMTVSKLMYKLLDQINDSHLADKALLDDGEILTSQLASENAESIPKEESKSMAENMGHATISGSSLEKKSHDYDAVLSAPSTGSSKQKIKGANIIKVENLSSKKHKIKVKDAAQMMHPDAYRDDLKKLTYSGGGLYLEKGDAAIGRLWKTEDRRNPIISYSSSIQANAYILFPQEILDDLSKELSDSEYNSLMENIQLKTFLKGKYKVQGIIKIAEDNTYEMRLLGGKKEYRVLFDLNSIKNNKNLFFDNTLAYCASKVFYHNGKTDKTVAKLGEKKIKEMVSILSSSDIYIKPSLNF
>NZ_CP011518.2|WP_052653871.1|425028_426615_-|IS66-family-transposase
MTSSHANLPDDIDALKALVFARDEVLHRQQAQPAALQERLTSREQEIAHLKLLIDKLKRMQFGRKSEKLARQFEQLELRLEDLQTDEGATEAATPIKSQVKVRSERQALPEHLAREERVYLPEAEDCPACGGNLKPLGEDVSEQLEYVRAHFRVIRHRRPKLACACCDTIVQQPAPSRPIERGVAGPHLLAHIITGKFLDHQPLYRQQAIYARDGVALDASQMGHWPGCVSGLLNPLVEAVRAYALGGTKVHGGDTPLPVLEAGRGGTKTGWLWVYVRDDRPFGSHEAPAVWFAYTPDRRGEHPQRHLASFSGVLQADAFAGYAPLYENDSIREAACMAHARRKIDDLHAVRPNAITEEALHRIGELYRREAEIRGKPPDERRQVRQAQAVPRLEALGRWYESVLPTRSAKSDTTRAIQYSLNRRPALAYYCEDGQAEIDNLIAERALRGVAIGRRNYLFAGADSGGERAAAMHSLIGTARLNGINPEAYLAYVLERIADHPVNRIAELLPWNVAQQLPDTAKIEPIR
>NZ_CP011518.2|WP_052653874.1|426671_427019_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIGVPSNTRVWIAAGVTDRRCGFNGLAAKVESVLQKDPFSGHVFLFRGRRGDLLKALYWSDGGLCLLAKRLEKGRFAWPRAQGGVVALTTAQLSLLLEGFDWREPVDAARPRSAR
>NZ_CP011518.2|WP_169835070.1|427003_427309_+|hypothetical-protein
MARRSPKCLQHRAEHLRINRTGNLDRRLTDPYSDRARIPPHFSSDGGEYGGERAPCMLESGAIADERDRQQWCGFDGKLRPLLAPPFEQHIGVDAVLARKL
>NZ_CP011518.2|WP_157123052.1|427246_427417_-|transposase
MESEKNHGNGRRGRPNYDVAFRRRLAAAACEPGVSISKLAREHGINANMLFKWRRK
>NZ_CP011518.2|WP_052653877.1|427755_429459_-|urease-subunit-alpha
MATITRENYASLYGPTTGDRVRLADTELIIKIENDHTIYGEEVTFGGGKVIRDGMGQSQRMAKDVADVVITNAIVLDYWGIIKADVGIKDGRIIGIGKAGNPDIQPGVTIVIGPGTDVIAGEGAILTPGTIDTHIHFIAPQQADEALATGTTTLVGGGTGPTVGTLATTVTAGPWAIHRMLEVADVMPVNIGLLGKGNASRPEPLREQIRAGVIGLKLHEDWGTTPAAIDNCLAVAEQEDIQVAIHTDTLNESGFVGDTFTAMKGRTIHSFHTEGAGGGHAPDIITAAGEENILPSSTNPTRPYTVNTVDEHLDMLMVCHHLSPRIPEDVAFAESRIRRDTIAAEDVLHDMGIFSMMSSDSQAMGRIGETTLRCWQTAHKMKVQRGPLPEDSERNDNFRVKRYLAKCTINPALTHGLAHEIGSIEVGKRADLVLWKPAFFGVKPKLVMIGGMIAMAPMGDPNASISTPQPVHYRPMYGVMGRALSATGVTFVSRAALDDGIGEKLKLTKTLVAAKGIRSLRKKDMIHNGLTPKIEVDPQTYQVRVDGKLITCEPAESLPMAQRYFLF
>NZ_CP011518.2|WP_052653880.1|429467_429773_-|urease-subunit-beta
MIPGEYLLEEGTIELNAGRQTVTLQVENSGDRPIQVGSHFHFYEVNSALVFDRERARGFRLNIPAGTAVRFEPGQDRNVELVALDGAREVYGFNARIMGKV
>NZ_CP011518.2|WP_052653883.1|429790_430093_-|urease-subunit-gamma
MDLLPREKDKLLLFTAALLAERRRARGLKLNYPEAIAFISSAVVEGAREGRTVAELMCYGATLLTREDVMDGVAEMIHDIQVEATFADGTKLVTVHNPIP
>NZ_CP011518.2|WP_052654607.1|430114_430939_-|urease-accessory-protein-UreD
MANRWCAKLDLWFENDRSKTRLIRRRHTGPLAIQQPFYPEADGAAHVYLLHPPGGIAGGDRLSIHCHLASTARTLLTTPGAAKFYRSDENLSEQHVHIDVGAGAICEYLPQETIVFSGAHASMKTKVSLAADSIYIGWDLVSLGRPAAGERFHTGNFRQSVEIVREDVPIWFERLNLSGTRMLTAQPFVLAERPIMGTMVYAGPAIENAAERVRGALGEGACAVFSVSQLERIIVCRYLGARMSEGKSLFRRAWEVLRECAMGKRGVAPRIWST
>NZ_CP011518.2|WP_084010134.1|431150_431723_+|hypothetical-protein
MLRVIAVKRNRSAGDQGGAASRGTLFMAHDERHLRRRVLRLADGTKILFDQPASIVLACGDQLLLDDDTCVAIRALDEALYSVTPRDTLHLVELAWHIGNRHLAAAIQAERILILRDHVIKAMLEGLGATVADIMAPFHPVQGAYSERGGGESGDGHGHTRRHAHSHAHGHSPDDASTAHGHDAHGHDHA

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Crispr_ID: NZ_CP011518_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011518_2

498459-498545

Orphan

Consensus_repeat	Method
GGTCCGGCTTTTTGGGGGGCACGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011518_2

>merge|NZ_CP011518|2|498459-498545|CRISPRCasFinder
GGTCCGGCTTTTTGGGGGGCACGGGGCTGCGGCTGAGCGCGGTATTGGTGTACTGGAGCAGGTCCGGCTTTTTGGAGGGCACGGGGC

>NZ_CP011518|2|2|498459-498545|CRISPRCasFinder
GGTCCGGCTTTTTGGGGGGCACGGGGC	TGCGGCTGAGCGCGGTATTGGTGTACTGGAGCA
GGTCCGGCTTTTTGGAGGGCACGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011518.2\|WP_169835090.1\|500252_501374_-\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_CP011518.2\|WP_157122856.1\|504156_505367_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|181829
NZ_CP011518.2\|WP_052653975.1\|489196_489646_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181911
NZ_CP011518.2\|WP_084010139.1\|503259_503724_+\|DUF932-domain-containing-protein	unknown	unknown	gnl\|CDD\|377596
NZ_CP011518.2\|WP_084009614.1\|507071_508133_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP011518.2\|WP_157123071.1\|494598_496917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011518.2\|WP_157123065.1\|479791_481141_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011518.2\|WP_052654012.1\|503793_504036_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP011518.2\|WP_052653966.1\|484803_485124_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP011518.2\|WP_084010140.1\|503995_504142_+\|DUF1353-domain-containing-protein	unknown	unknown	gnl\|CDD\|377774
NZ_CP011518.2\|WP_157123067.1\|490168_490324_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011518.2\|WP_052653972.1\|485708_486734_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011518.2\|WP_052653963.1\|483602_484577_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP011518.2\|WP_084009614.1\|487944_489006_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP011518.2\|WP_084010138.1\|501486_502221_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379319
NZ_CP011518.2\|WP_046289972.1\|491210_492431_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP011518.2\|WP_157123069.1\|490444_490594_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011518.2\|WP_052654006.1\|502417_502657_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011518.2\|WP_084010141.1\|506457_507138_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP011518.2\|WP_169835089.1\|499519_499696_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011518.2\|WP_169835090.1\|500252_501374_-\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	7.26188e-30
NZ_CP011518.2\|WP_052653975.1\|489196_489646_-\|hypothetical-protein	gnl\|CDD\|181911	PRK09498, sifA, type III secretion system effector SifA.	0.000202096
NZ_CP011518.2\|WP_052654012.1\|503793_504036_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	0.000100034
NZ_CP011518.2\|WP_084010138.1\|501486_502221_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379319	pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	8.62561e-16
NZ_CP011518.2\|WP_084010140.1\|503995_504142_+\|DUF1353-domain-containing-protein	gnl\|CDD\|377774	pfam07087, DUF1353, Protein of unknown function (DUF1353). This family consists of several hypothetical bacterial proteins of around 100 residues in length. The function of this family is unknown.	1.42973e-09
NZ_CP011518.2\|WP_084010139.1\|503259_503724_+\|DUF932-domain-containing-protein	gnl\|CDD\|377596	pfam06067, DUF932, Domain of unknown function (DUF932). Family of prokaryotic proteins with unknown function. Contains a number of highly conserved polar residues that could suggest an enzymatic activity.	2.53933e-10
NZ_CP011518.2\|WP_052653963.1\|483602_484577_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.3251e-07
NZ_CP011518.2\|WP_084009614.1\|487944_489006_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.64083e-23
NZ_CP011518.2\|WP_052653966.1\|484803_485124_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.15293e-19
NZ_CP011518.2\|WP_046289972.1\|491210_492431_+\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	3.26985e-79
NZ_CP011518.2\|WP_157122856.1\|504156_505367_-\|IS3-family-transposase	gnl\|CDD\|181829	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed.	1.21889e-117
NZ_CP011518.2\|WP_084010141.1\|506457_507138_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.45697e-53
NZ_CP011518.2\|WP_084009614.1\|507071_508133_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.64083e-23

>NZ_CP011518.2|WP_157123071.1|494598_496917_-|hypothetical-protein
MRNRVFVDRQLYPNYQTRPKPVPCTDPLEGKASCSGQGVLRSDEERHYDAGIAACQEIKKLIEVKVRSDDFFDGEENNRLSGYMNTFTTYLQALNCGEMNPKAMALRGKLLTEFGGIIKLVLDAPETVRSSMEATCLKVVVDCIFEFGGKNYNYELKKIIDIVDILLDKVGKKDLKNDLKELIYVQNKLYEMTEIETIEKFINSVHKNSKKYETAVYRQYSDAEMSDADVLKNFSIPRISGKTTAADDVAYFSKVVKKEVVESDDVKRSDEIIEDLFQETVIPLAKDSVQRAECFEMTRGSFNTSCRIWTHALSRRFRGGELSEKLADDMKDVIYIMADYCDYYFEKMKWFNGSDVLVAKAGAAYLKNLKEFAAQNRRILARINNEPIEESEPMDCGINKDSLLAMLEGNSRREVNDIWEEYMLSKKNDLPDPTLTAVSTFVPIELISPQNLYSLEILVLAFTNNLIEQAVQKNIDLTPSIEYESLSDEGDDISQESSEMAAAKWEEPRRSRTPEPVETIPFITALAKETSRTDIEVFKEVPEKPEKIEKDNIKQPKSKKNSTLHQSDGMISAKDAKKLLHPNAFAGDLRKISFPGGVLHLTKENFSIGRLWQTEDRLKSVISYTKTEHPKDYAFFPQEILSELSKKITESEYKVLMLDIQANSCLRSRYKVQGIIKIKDNEKDKDRYQMRIVGGDKSYRLVFKLFAAHNKNNLFINETRIYMMTDVFFHHGKTNKITAQLSDHKVSKLAERLSSAALHITPTASLSEELLH
>NZ_CP011518.2|WP_046289972.1|491210_492431_+|ISL3-family-transposase
MLDRKLLESLGGWQGYAVERVEWPEGTGRTLSIYLKPTAKVMLCEQCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLLCEQCGGPRLERLTWLGRYQRVTDRLAAACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSRIEYLAMDEFALHKGHRYATVVVDPISRQVLWIGPGRSRETARAFFEQLPRGVAQRIKAVAIDMTTAYELEIQAHCPRAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRVIKSSRWLLLRNRDKLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYRRPAWAKQAWHHWCEQAEQSGIAPLNTFAQRLKGYLHGILARCRHRLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRAAFPGNAQ
>NZ_CP011518.2|WP_157123069.1|490444_490594_-|hypothetical-protein
MEIWGIYETYLKFIEFVETHPLGLARDFSLVMIDVAQPVAEMGSQCFWV
>NZ_CP011518.2|WP_157123067.1|490168_490324_+|hypothetical-protein
MTSTKNAEYPPDSDNEPPARWPVEAQNLPVTPVTRGIGSTAAAAQTRFTGH
>NZ_CP011518.2|WP_052653975.1|489196_489646_-|hypothetical-protein
MPPSDTSPIKTVPISLRGNWLVDGQISAAEVDHAERTKGAKPIDRGRLEKFWDDLKNMFCTTRRAEATGYLNAMMAPDKSDENRIESLLSLFGMASNAQLSRFQAHCDPDHHDYAIISIDQTPISIRVPRKVLLEQTQFVVVNSRRTPG
>NZ_CP011518.2|WP_084009614.1|487944_489006_+|IS110-family-transposase
MDDRAIEGEVILGVDTHLDTHVGALISETGKLVGTLSVAAETTGYLKLLTWANSLGHVRRAGVEGTGTYGAGLARVLRDHDIDVLEVNRPDRAARRSRGKSDPTDAENAARAVLAGRATAIPKEQSGAAEAMRTVSVARRSAVKAKTQAINQLRALLVSAPQDIRERLLRTKTSECVANCAKLRSLGGAPMLQALATTLRLLAKRYLALAEELSTLDAMLEHLTQRHARRLRERFGVGPQTAAVLVAVAGDNPERLKSDAALAALCGTSPLQASSGKTVRHRLNRGGDRAANNALWTIAMVRMRSDPRTRAYVERRTKEGMSNKEIHRCLKRYIVRELYPLILADLADSASAS
>NZ_CP011518.2|WP_052653972.1|485708_486734_-|hypothetical-protein
MSGEIRPLQFDPAYCRLTLAAHLKTVGATTGFDPKDATTTLALHLAEQRAQESEAWAEIEKWFPTGQARHAREYLKDFLSGTTCVYTKRYCLTKMQEMALEEYKSRFRRQESCGRSELLRLAGVINRNVHPLYEGIEKDRFGSQLSELNSRLRSLDGDVERDECDSIEEDRSERELRELPSRLSSVAENDTVANARVHGTTRRLVSQRFVEQRRTLQALPAPVFSAAIRLEPRVSHEGVVSVGGNASGVPERAHRRVLDNHAWAHQIRNYEHRALLAGHAMLEARPHTSLLAAHHQANPRHHDLLPANSAIGSLAKFVFAAEDEHEQALHGTANPRVSEGS
>NZ_CP011518.2|WP_052653966.1|484803_485124_-|recombinase-family-protein
MFAEKITGIRRARPQLDRLLDHLRAGDVVVTHLNRLARSIRDPLEIVQRVRDAGAGPAQSCRALARHDHAGRMALTVFGGIAEFERSPIVKRTGSGRGAAKARGTK
>NZ_CP011518.2|WP_052653963.1|483602_484577_+|methyltransferase-domain-containing-protein
MPLNISFSPSSYSQIEAIEQRFVALKPEVSDTLKACAELKLLLPQFIKFLKDGDNARHSEDVAHFLMGKIDARQLPPALRALGKTFNHHEYQPVKTELYELVATHRHDRGIMGYFLGRDEPREKTIAKLEWLNARLNDINESKRIAKARQADNIELLVSKTDVNGKKVLDVGSGLCFNSAAMSNLGGDVYSVDPDNDATTSALALGNTTLEKLRPTLVEDVVEEFRDSVDLATVFYFLIPFDVRDSAFKALCAVMKQDGKVVITTEDDDLKNSIVEHGTNYFSSVAAFPRGSKDPIRLWNDPVFGVFGGLWQITLERPIKPSSI
>NZ_CP011518.2|WP_157123065.1|479791_481141_+|hypothetical-protein
MLKRIAEHIVPPLLLGCLDTEIAYAAALQIATQLGDAEFAALGPSAVRRAVDDRLTGGPLGTTHIALEGDGTVLVHQRSQWAAYVDGQGQTVASEHAGTPVLEVGWLAAFRVVPLVSDSPRANANATKRFALHGHMRHCYLDTLDAGLKTMLTRYPSSLDDDIAHRLASVFEKARIRLEPRTHDVRRSRTPLPIPHDTARRMAASATSATGTCARPRAVQITTPSQASGVRGVGVPALIHEQLAVSDFCDLCVTRVRQLILKSATEEDFDSGGMQHQMATPRFRFYNEAIVAYRKDIPESLPPPRKYLAFVLAALKYSTGNCVEMALTAAAFAQLKTQDFFSMRGHHSDGVKAEIYGPAFYDPQLGGSADHFFCVLNLVVNGHPYKMAVDPWMWNSMPCDAYLRALKDHPMPPITQPDTLFVTEKDMTDAINHPDFTEPVRSVFNRYAI
>NZ_CP011518.2|WP_169835089.1|499519_499696_-|hypothetical-protein
MTELRASIRGFEIIHGAVLEQEPFRQRTRLAEAERTRHRKVTKAALQSQRIASAKIAS
>NZ_CP011518.2|WP_169835090.1|500252_501374_-|protein-L-isoaspartate-O-methyltransferase
MRATYARQILALANASENHRLERAFAAVPRETFLGEDRWRIPTSLAGYTPLPENDPVLIYQDVVVGLATQRGVNNGSPALHARWLNAMAPHRGEVVAHLGAGAGYYTAILAELVGSTGRVIALEYDEDLCTRAVKNLAHRTNVQVVHADGAAYPVEPVDGIYVNFGVARPARSWIDRLKPGGRLVPPLGAPEKQEFLPGRVAAQAIGLLVTRVDNGFGAASLGPASFIFAEGALGATTEEVNALRVSLQNANDGKIRSLLLDRRPTGGVWLAASNRALSSEAPVRVGGREEKALVTPGRWAYRSKPQTGPVVFCRACTGKNASGPLGFAARNGSPQAPHVIGRHPRTPVCKTTPGGKRRYAAGGPPLPRLRQG
>NZ_CP011518.2|WP_084010138.1|501486_502221_-|2OG-Fe(II)-oxygenase
MRPKTAVEIARLHQAFRQSGAVRVEEVLDEAGARDAHQRLASHQEWFITIKEPARVSGRDCTEWRVAEWERMAARQKRTIIDDLHGRAAASFEMYFKRYPLIEKFRTGEDGDIPMMRLARLLVSGAFLGLIGNMTGIDGLTDVTGMASRLDAGHFILSHTDRQPEGSVGRREVAFVLYLTQGWRDDGGAHTCRWSEGASAAVCIPPRINTMLIFRVPRAHAVLYVPPFVTASRLALAGWAYSRT
>NZ_CP011518.2|WP_052654006.1|502417_502657_-|hypothetical-protein
MMGSSVPNLSVNCDDATPEKDTAVELHMALPIPYADLGKVRKWLGDGDGTSAEQYPAVKYPQHCEWLSDWPAASREPRA
>NZ_CP011518.2|WP_084010139.1|503259_503724_+|DUF932-domain-containing-protein
MRAPAQASPSCLGSSRIDGPPLFVRRHTPQLTSHFASHSPVLRAESPLSDDPIRAVAPSIFAPTPHESRAERYRHIPTATVLPALRGEGFAPFTVCQTRGRHDDRRDATNHVIRLRHVSRINGREADEIILPNSHGGTRSYQSKRSIHTVLCAI
>NZ_CP011518.2|WP_052654012.1|503793_504036_+|transposase
MGRRGRANHDVAFRRRLAAAACEPGVSVSKLARAHDINANRLFKRQREYRAPLAIEPAPLLPVTLVSADWRHFGRGGSRS
>NZ_CP011518.2|WP_084010140.1|503995_504142_+|DUF1353-domain-containing-protein
MTGGISDEAAVVHDWPYAKEPVSRAVADKVLREASAVTGVPGWLELTL
>NZ_CP011518.2|WP_157122856.1|504156_505367_-|IS3-family-transposase
MEVLTGPERRRRWTAEQKLSMVRESFEPGKSVSMVARHYGVNPNQLFHWRKLYQDGSLSAVKAGEEVVPASELADALKQIRELQRMLGKKTMENEILREAVEYSRGKKMDSALALAAGGRPVKLVCEVLGVSRSNVSARLSRPATWRDGRQSRPTDDETVVEEIRRVVGDLPSYGYRRVWGTLRNERVAVGLAPFNAKRIYRIMRTHGLLTQRRPIAPRAHRRHDGKVAVARSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREAMSWAATTAGHSGDIVRDVMLAAVENRFGNEVHTPSEIEWLSDNGSGYTADDTRRFAMNIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAATAAHNLAIAFEHYNEKHPHSALKYRSPREFRRSMDSATLV
>NZ_CP011518.2|WP_084010141.1|506457_507138_+|ATP-binding-protein
MLTPGAHRDLTGFDFGQAHVDEVLVRELHGLAFLSSAHNVVFIGGPGTGKTHLATAIGIQAVQRQGKRVRYFSTVELTNALEQEKAIGKQGQIAHKLMYVDRVILDEPGYLPFSQTGGALLFHPLLKLDEHTSVVITTNLSFSAWVGVFGDAKMTTALLDRVTHHCHIVETGNESWRFKTGSAKSRVSRKKAPKGTATDDLTLLCQEALAESARSARMSGYNSLTI
>NZ_CP011518.2|WP_084009614.1|507071_508133_-|IS110-family-transposase
MDDRAIEGEVILGVDTHLDTHVGALISETGKLVGTLSVAAETTGYLKLLTWANSLGHVRRAGVEGTGTYGAGLARVLRDHDIDVLEVNRPDRAARRSRGKSDPTDAENAARAVLAGRATAIPKEQSGAAEAMRTVSVARRSAVKAKTQAINQLRALLVSAPQDIRERLLRTKTSECVANCAKLRSLGGAPMLQALATTLRLLAKRYLALAEELSTLDAMLEHLTQRHARRLRERFGVGPQTAAVLVAVAGDNPERLKSDAALAALCGTSPLQASSGKTVRHRLNRGGDRAANNALWTIAMVRMRSDPRTRAYVERRTKEGMSNKEIHRCLKRYIVRELYPLILADLADSASAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011518_1	1.1\|421649\|45\|NZ_CP011518\|CRISPRCasFinder	421649-421693	45	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	421649-421693	0	1.0
NZ_CP011518_2	2.1\|498486\|33\|NZ_CP011518\|CRISPRCasFinder	498486-498518	33	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	498486-498518	0	1.0
NZ_CP011518_1	1.1\|421649\|45\|NZ_CP011518\|CRISPRCasFinder	421649-421693	45	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	380465-380509	9	0.8

1. spacer 1.1|421649|45|NZ_CP011518|CRISPRCasFinder matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 0, identity: 1.0

taccgcttctacggtacacatcgagtgcttacgcagcaacttcct	CRISPR spacer
taccgcttctacggtacacatcgagtgcttacgcagcaacttcct	Protospacer
*********************************************

2. spacer 2.1|498486|33|NZ_CP011518|CRISPRCasFinder matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcggctgagcgcggtattggtgtactggagca	CRISPR spacer
tgcggctgagcgcggtattggtgtactggagca	Protospacer
*********************************

3. spacer 1.1|421649|45|NZ_CP011518|CRISPRCasFinder matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 9, identity: 0.8

taccgcttctacggtacacatcgagtgcttacgcagcaacttcct	CRISPR spacer
taccgcttctacggtacacatcgagtgcttaccaatcgccaacgc	Protospacer
********************************  * *. *  * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6963 : 92397

Stx2-converting_phage(28.57%)

integrase,protease,transposase

attL 33035:33052|attR 95610:95627

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052654276.1\|6963_7536_+\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	3.9e-31	44.2
WP_084010097.1\|7498_7978_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	7.7e-25	47.4
WP_052654280.1\|8313_8514_+	hypothetical protein	NA	NA	NA	NA
WP_169835072.1\|8633_8783_-	hypothetical protein	NA	NA	NA	NA
WP_052654283.1\|12061_12382_-	hypothetical protein	NA	NA	NA	NA
WP_157122930.1\|13000_14881_-	hypothetical protein	NA	NA	NA	NA
WP_052654286.1\|15502_17479_-	hypothetical protein	NA	NA	NA	NA
WP_157122931.1\|18263_18959_+	hypothetical protein	NA	NA	NA	NA
WP_157123118.1\|19848_20280_-	VirK protein	NA	NA	NA	NA
WP_052654290.1\|20775_21165_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_169835073.1\|21336_24768_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_052654292.1\|25256_26021_-	hypothetical protein	NA	NA	NA	NA
WP_157122932.1\|26311_26545_+	hypothetical protein	NA	NA	NA	NA
WP_052654297.1\|27393_27909_-	VUT family protein	A0A2H4N7D9	Pectobacterium_phage	8.6e-30	49.3
WP_052654299.1\|28287_28665_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA
WP_084010152.1\|28681_29755_-	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA
33035:33052	attL	NA	NA	NA	NA
WP_084010099.1\|34988_35663_+	M81 family metallopeptidase	NA	NA	NA	NA
WP_065225861.1\|35844_37890_-	hypothetical protein	NA	NA	NA	NA
WP_052654309.1\|38358_40263_-	hypothetical protein	NA	NA	NA	NA
WP_157122933.1\|41231_42596_+	hypothetical protein	NA	NA	NA	NA
WP_052654313.1\|42933_45255_+	hypothetical protein	NA	NA	NA	NA
WP_157122937.1\|45962_46112_+	hypothetical protein	NA	NA	NA	NA
WP_052654315.1\|46247_46841_+	hypothetical protein	NA	NA	NA	NA
WP_052654317.1\|47863_48514_+	ParA family protein	K7R2R7	Vibrio_phage	2.3e-19	33.0
WP_052654319.1\|48525_49557_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_169835074.1\|49594_50542_-	hypothetical protein	NA	NA	NA	NA
WP_084010153.1\|53676_54846_-\|protease	aspartyl protease family protein	NA	NA	NA	NA
WP_157122939.1\|55005_55626_-	hypothetical protein	NA	NA	NA	NA
WP_052654325.1\|56139_58371_+	hypothetical protein	NA	NA	NA	NA
WP_052654327.1\|58367_58910_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_052654331.1\|59950_60307_+	hypothetical protein	NA	NA	NA	NA
WP_157122941.1\|61766_62678_-	hypothetical protein	NA	NA	NA	NA
WP_169835075.1\|63811_63916_-	hypothetical protein	NA	NA	NA	NA
WP_052654338.1\|64400_65153_+	hypothetical protein	NA	NA	NA	NA
WP_157123122.1\|65313_65415_-\|transposase	transposase	NA	NA	NA	NA
WP_157122942.1\|65415_65928_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	S5WIU1	Leptospira_phage	2.7e-28	40.4
WP_052654340.1\|66840_68994_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_157122947.1\|69813_71664_-	hypothetical protein	NA	NA	NA	NA
WP_157122949.1\|73048_73210_-	hypothetical protein	NA	NA	NA	NA
WP_052654347.1\|73634_73952_+	hypothetical protein	NA	NA	NA	NA
WP_052654349.1\|74035_75118_+	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	2.4e-37	32.7
WP_052654631.1\|75541_76480_+	HNH endonuclease	NA	NA	NA	NA
WP_169835076.1\|76539_78372_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_084010104.1\|78766_79063_-	hypothetical protein	NA	NA	NA	NA
WP_052654352.1\|80178_80964_-	hypothetical protein	NA	NA	NA	NA
WP_157122953.1\|82279_82612_+	hypothetical protein	NA	NA	NA	NA
WP_052654356.1\|82884_83832_+	hypothetical protein	NA	NA	NA	NA
WP_052654358.1\|84127_84424_-	hypothetical protein	NA	NA	NA	NA
WP_157122955.1\|84478_84625_-	hypothetical protein	NA	NA	NA	NA
WP_169835077.1\|84767_84974_-	hypothetical protein	NA	NA	NA	NA
WP_052654364.1\|85857_86484_-	hypothetical protein	NA	NA	NA	NA
WP_052654366.1\|86937_87960_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_052654368.1\|89869_90139_+	hypothetical protein	NA	NA	NA	NA
WP_052654632.1\|90569_91079_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_046292470.1\|91176_92397_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	1.1e-195	81.9
95610:95627	attR	NA	NA	NA	NA

DBSCAN-SWA_2

100736 : 203709

Enterobacteria_phage(25.0%)

integrase,protease,transposase

attL 88385:88401|attR 105026:105042

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
88385:88401	attL	NA	NA	NA	NA
WP_084010106.1\|100736_101180_-\|transposase	transposase	NA	NA	NA	NA
WP_046289963.1\|101208_102294_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_084010107.1\|102532_103207_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_052653696.1\|103203_103704_-\|transposase	transposase	NA	NA	NA	NA
WP_084010108.1\|103795_103972_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_052654374.1\|104879_106880_-	metallophosphoesterase	NA	NA	NA	NA
105026:105042	attR	NA	NA	NA	NA
WP_157122961.1\|107325_107661_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_157123124.1\|108255_108564_+\|transposase	transposase	NA	NA	NA	NA
WP_157122963.1\|108560_108731_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_157122967.1\|109474_110416_-	hypothetical protein	NA	NA	NA	NA
WP_052654382.1\|111644_112241_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.5e-25	33.9
WP_046289972.1\|112486_113707_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6
WP_157122969.1\|115226_115562_+	hypothetical protein	NA	NA	NA	NA
WP_157122971.1\|116377_116749_+	hypothetical protein	NA	NA	NA	NA
WP_052654392.1\|118193_119051_-	hypothetical protein	NA	NA	NA	NA
WP_052654394.1\|120046_120253_+	hypothetical protein	NA	NA	NA	NA
WP_052654396.1\|121157_122372_+	hypothetical protein	NA	NA	NA	NA
WP_052654398.1\|123926_125864_-	hypothetical protein	NA	NA	NA	NA
WP_084010110.1\|126603_127137_+	hypothetical protein	NA	NA	NA	NA
WP_052654406.1\|129806_130427_+	hypothetical protein	NA	NA	NA	NA
WP_157122973.1\|130432_131635_+	hypothetical protein	NA	NA	NA	NA
WP_052654410.1\|131594_132803_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.1e-40	43.7
WP_157122856.1\|132872_134083_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7
WP_084010154.1\|134581_134761_+\|transposase	transposase	NA	NA	NA	NA
WP_169835078.1\|135527_136838_-	MFS transporter	NA	NA	NA	NA
WP_157122977.1\|138226_140209_+	hypothetical protein	NA	NA	NA	NA
WP_157122979.1\|141048_143289_-	hypothetical protein	NA	NA	NA	NA
WP_052654424.1\|143746_145387_+	hypothetical protein	NA	NA	NA	NA
WP_157122981.1\|146211_146496_-	hypothetical protein	NA	NA	NA	NA
WP_157122983.1\|147651_150381_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_052654434.1\|151467_152919_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_052654436.1\|153065_155957_+	EAL domain-containing protein	G3MA91	Bacillus_virus	1.1e-20	35.4
WP_052654438.1\|156201_157023_+	FkbM family methyltransferase	C7U048	Ostreococcus_tauri_virus	1.2e-09	29.1
WP_052654439.1\|157402_157630_+	hypothetical protein	NA	NA	NA	NA
WP_084010155.1\|157856_158690_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_169835079.1\|159704_164711_+	hypothetical protein	NA	NA	NA	NA
WP_169835080.1\|165185_166916_+	hypothetical protein	NA	NA	NA	NA
WP_052654444.1\|168084_169920_-	hypothetical protein	NA	NA	NA	NA
WP_084010113.1\|171771_172128_+	hypothetical protein	NA	NA	NA	NA
WP_052654448.1\|172741_174241_+	hypothetical protein	NA	NA	NA	NA
WP_052654450.1\|176276_177131_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_052654452.1\|179191_180118_+	hypothetical protein	NA	NA	NA	NA
WP_052654460.1\|183861_184857_+	hypothetical protein	NA	NA	NA	NA
WP_157122989.1\|186035_187202_-	hypothetical protein	NA	NA	NA	NA
WP_052654467.1\|188952_190446_-	hypothetical protein	NA	NA	NA	NA
WP_052654469.1\|190442_190970_-	hypothetical protein	NA	NA	NA	NA
WP_157122991.1\|192802_194407_+	hypothetical protein	NA	NA	NA	NA
WP_052654475.1\|196030_197068_+	exo-alpha-sialidase	NA	NA	NA	NA
WP_052654477.1\|197567_199226_+	hypothetical protein	NA	NA	NA	NA
WP_157122993.1\|199739_199901_-	hypothetical protein	NA	NA	NA	NA
WP_084010116.1\|200359_201715_-	purine permease	Q9KX94	Enterobacteria_phage	3.6e-19	27.8
WP_052654481.1\|202169_202676_-	nucleoside deaminase	NA	NA	NA	NA
WP_052654483.1\|203376_203709_+\|transposase	transposase	B6ETC4	Enterobacteria_phage	2.4e-17	51.0

DBSCAN-SWA_3

217656 : 294245

Bacillus_virus(14.29%)

transposase,integrase

attL 271604:271620|attR 298002:298018

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169835081.1\|217656_218655_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_052654500.1\|218716_219604_-	FliM/FliN family flagellar motor switch protein	NA	NA	NA	NA
WP_052654503.1\|219593_220196_-	hypothetical protein	NA	NA	NA	NA
WP_052654505.1\|221033_221315_-	hypothetical protein	NA	NA	NA	NA
WP_157122999.1\|221673_222816_-	hypothetical protein	NA	NA	NA	NA
WP_157123000.1\|224674_225847_-	hypothetical protein	NA	NA	NA	NA
WP_157123001.1\|226660_228628_-	hypothetical protein	NA	NA	NA	NA
WP_157123003.1\|229560_231600_-	hypothetical protein	NA	NA	NA	NA
WP_052654514.1\|231792_235179_-	EAL domain-containing protein	G3MA91	Bacillus_virus	4.2e-16	28.3
WP_052654517.1\|235347_235728_-	hypothetical protein	NA	NA	NA	NA
WP_052654519.1\|235721_237047_-	FliI/YscN family ATPase	NA	NA	NA	NA
WP_052654521.1\|237033_239085_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_052654523.1\|239071_239449_-	type III secretion protein	NA	NA	NA	NA
WP_052654525.1\|239850_240495_+	type III secretion system export apparatus subunit SctR	NA	NA	NA	NA
WP_052654527.1\|240505_240775_+	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA
WP_052654530.1\|240776_241556_+	type III secretion system export apparatus subunit SctT	NA	NA	NA	NA
WP_065225874.1\|241552_242869_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA
WP_052654532.1\|242846_243836_+	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	8.2e-21	41.5
WP_052654534.1\|243844_246646_+	two component system sensor kinase	A0A1V0SGX0	Hokovirus	2.2e-23	34.8
WP_052654536.1\|246795_247446_-	two component system response regulator	NA	NA	NA	NA
WP_065225875.1\|248430_249492_-	hypothetical protein	NA	NA	NA	NA
WP_052654537.1\|249484_250642_-	hypothetical protein	NA	NA	NA	NA
WP_052654635.1\|250638_251193_-	hypothetical protein	NA	NA	NA	NA
WP_052654538.1\|251189_251897_-	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA
WP_052654540.1\|251893_252217_-	hypothetical protein	NA	NA	NA	NA
WP_052654541.1\|252213_252507_-	EscG/YscG/SsaH family type III secretion system needle protein co-chaperone	NA	NA	NA	NA
WP_157123005.1\|252523_253459_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_065225877.1\|253570_253795_-	hypothetical protein	NA	NA	NA	NA
WP_052654544.1\|253814_254993_-	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA
WP_052654546.1\|254999_256469_-	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	R9TEZ5	Vibrio_phage	5.9e-15	24.9
WP_052654548.1\|256465_256867_-	hypothetical protein	NA	NA	NA	NA
WP_052654554.1\|257667_259065_+	hypothetical protein	NA	NA	NA	NA
WP_052654556.1\|260219_261389_+	hypothetical protein	NA	NA	NA	NA
WP_157123006.1\|262476_262629_-	hypothetical protein	NA	NA	NA	NA
WP_157123008.1\|264419_264707_+	hypothetical protein	NA	NA	NA	NA
WP_052654563.1\|265480_266128_+	hypothetical protein	A0A0U4IID7	Pseudomonas_phage	2.6e-47	43.3
WP_084010156.1\|267564_267942_-\|transposase	transposase	A4PE56	Ralstonia_virus	2.7e-17	63.8
WP_169835082.1\|268844_269045_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_052654567.1\|269170_269428_-	hypothetical protein	NA	NA	NA	NA
WP_157123010.1\|270415_270916_+	hypothetical protein	NA	NA	NA	NA
271604:271620	attL	NA	NA	NA	NA
WP_157123012.1\|272557_274498_+	hypothetical protein	NA	NA	NA	NA
WP_044454374.1\|274626_275733_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_065225879.1\|276434_276764_+	hypothetical protein	NA	NA	NA	NA
WP_157123014.1\|277029_278355_-	hypothetical protein	NA	NA	NA	NA
WP_157123016.1\|278903_279068_-	hypothetical protein	NA	NA	NA	NA
WP_052654583.1\|279876_281895_-	hypothetical protein	NA	NA	NA	NA
WP_052654585.1\|282316_283633_-	HipA domain-containing protein	NA	NA	NA	NA
WP_084010157.1\|283640_284006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_169835083.1\|284279_284546_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_052654587.1\|285122_285575_-	hypothetical protein	NA	NA	NA	NA
WP_084010120.1\|287002_287263_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_052654589.1\|288060_289251_-	MFS transporter	NA	NA	NA	NA
WP_084010158.1\|290391_290631_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_052654592.1\|290630_291041_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_046290067.1\|291555_292821_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.9e-103	49.9
WP_046291684.1\|293210_294245_-\|transposase	IS110 family transposase	NA	NA	NA	NA
298002:298018	attR	NA	NA	NA	NA

DBSCAN-SWA_4

299741 : 376304

Stx2-converting_phage(31.82%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169835084.1\|299741_300185_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	9.4e-09	33.1
WP_046289885.1\|300181_300529_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.3e-34	62.9
WP_046290236.1\|301739_302528_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.0e-33	35.8
WP_046290068.1\|306229_306577_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.1e-36	65.4
WP_052652849.1\|306573_307008_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.3e-14	43.0
WP_046289963.1\|307572_308658_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_169835004.1\|310121_310550_-\|transposase	transposase	NA	NA	NA	NA
WP_046289963.1\|310593_311679_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_084009760.1\|311917_312592_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_052652582.1\|312588_313092_-\|transposase	transposase	NA	NA	NA	NA
WP_157122856.1\|313400_314611_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7
WP_044454374.1\|315250_316357_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_052653689.1\|316883_317132_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_052653693.1\|317986_318865_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_157123022.1\|318888_319050_-	hypothetical protein	NA	NA	NA	NA
WP_084010122.1\|319119_320055_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.9e-07	29.4
WP_052653696.1\|320193_320694_-\|transposase	transposase	NA	NA	NA	NA
WP_157122635.1\|320827_321915_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.1e-46	39.0
WP_052653699.1\|323718_324003_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.0e-24	55.9
WP_052654598.1\|323999_324383_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_052653702.1\|324715_325399_-	urease accessory protein UreF	NA	NA	NA	NA
WP_052653705.1\|325481_326075_-	HupE/UreJ family protein	NA	NA	NA	NA
WP_052653708.1\|326096_326300_-	hypothetical protein	NA	NA	NA	NA
WP_052653711.1\|326369_326711_-	hypothetical protein	NA	NA	NA	NA
WP_157123024.1\|328855_330280_+	hypothetical protein	NA	NA	NA	NA
WP_052653723.1\|331962_332151_+	hypothetical protein	NA	NA	NA	NA
WP_052653726.1\|333113_333440_-	hypothetical protein	NA	NA	NA	NA
WP_157123026.1\|335046_336012_+	hypothetical protein	NA	NA	NA	NA
WP_157123126.1\|336680_337890_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	3.9e-97	62.4
WP_052653743.1\|338326_339031_+	hypothetical protein	NA	NA	NA	NA
WP_052654599.1\|339079_339433_+	hypothetical protein	NA	NA	NA	NA
WP_052653746.1\|340008_340476_-	RES domain-containing protein	NA	NA	NA	NA
WP_084010123.1\|340472_340970_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_084010124.1\|341060_343460_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.1e-15	26.3
WP_052653749.1\|343749_344769_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_052653752.1\|344977_345802_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	3.9e-40	36.3
WP_052653755.1\|346562_347558_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_052653758.1\|348058_348382_+	hypothetical protein	NA	NA	NA	NA
WP_157123028.1\|350876_352046_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.7e-37	32.3
WP_052653770.1\|352339_352570_+\|transposase	transposase	Q6J1X2	Lactobacillus_phage	2.2e-06	43.1
WP_052653776.1\|353390_354284_+	hypothetical protein	NA	NA	NA	NA
WP_084010127.1\|354914_355574_+\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	1.1e-10	61.5
WP_157123031.1\|355721_355871_-	hypothetical protein	NA	NA	NA	NA
WP_052653779.1\|357000_357264_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_046289972.1\|358003_359224_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6
WP_157123033.1\|360738_361826_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.4e-45	38.6
WP_046290953.1\|362668_363934_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
WP_052653788.1\|365382_365679_+\|transposase	transposase	NA	NA	NA	NA
WP_084010128.1\|365675_366104_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_052653791.1\|366618_367104_-	hypothetical protein	NA	NA	NA	NA
WP_046290953.1\|367702_368968_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
WP_052653796.1\|370802_371192_+	IS66 family insertion sequence hypothetical protein	B6DZU5	Stx2-converting_phage	5.0e-14	39.1
WP_052653799.1\|371188_371536_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.3e-34	61.9
WP_052653802.1\|372638_373205_-	recombinase family protein	M9Q1K0	Clostridium_phage	1.0e-28	43.1
WP_052653805.1\|373340_376304_-\|transposase	Tn3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

404422 : 478744

Stx2-converting_phage(50.0%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157122635.1\|404422_405509_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.1e-46	39.0
WP_046290551.1\|405647_406898_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.2e-40	43.7
WP_169835086.1\|408221_408479_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_046290070.1\|408526_409123_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.4e-20	37.7
WP_046290069.1\|409134_410679_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	8.3e-137	48.5
WP_046290068.1\|410730_411078_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.1e-36	65.4
WP_052652849.1\|411074_411509_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.3e-14	43.0
WP_157123044.1\|411556_412922_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.0e-77	52.9
WP_157123046.1\|413256_414606_+	hypothetical protein	NA	NA	NA	NA
WP_052653856.1\|415464_416775_+	hypothetical protein	NA	NA	NA	NA
WP_046289963.1\|417620_418706_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_084009760.1\|418944_419619_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_052652582.1\|419615_420119_-\|transposase	transposase	NA	NA	NA	NA
WP_052653865.1\|421656_422103_-	hypothetical protein	NA	NA	NA	NA
WP_157123050.1\|422526_424752_-	hypothetical protein	NA	NA	NA	NA
WP_052653871.1\|425028_426615_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.2e-144	53.2
WP_052653874.1\|426671_427019_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	5.9e-35	62.9
WP_169835070.1\|427003_427309_+	hypothetical protein	NA	NA	NA	NA
WP_157123052.1\|427246_427417_-\|transposase	transposase	B6DZU5	Stx2-converting_phage	8.5e-11	60.7
WP_052653877.1\|427755_429459_-	urease subunit alpha	NA	NA	NA	NA
WP_052653880.1\|429467_429773_-	urease subunit beta	NA	NA	NA	NA
WP_052653883.1\|429790_430093_-	urease subunit gamma	NA	NA	NA	NA
WP_052654607.1\|430114_430939_-	urease accessory protein UreD	NA	NA	NA	NA
WP_084010134.1\|431150_431723_+	hypothetical protein	NA	NA	NA	NA
WP_052653889.1\|431769_432387_+	urease accessory protein UreG	NA	NA	NA	NA
WP_157123055.1\|432376_433348_+	cobaltochelatase subunit CobS	NA	NA	NA	NA
WP_052653895.1\|433357_435214_+	cobalt chelatase	A0A2H4P735	Pseudomonas_phage	4.1e-13	24.8
WP_157123057.1\|435691_437572_-	hypothetical protein	NA	NA	NA	NA
WP_052653904.1\|439020_439950_+	hypothetical protein	NA	NA	NA	NA
WP_169835087.1\|440716_442657_+	hypothetical protein	NA	NA	NA	NA
WP_052653910.1\|443261_448613_-	hypothetical protein	NA	NA	NA	NA
WP_157123061.1\|450142_455605_-	hypothetical protein	NA	NA	NA	NA
WP_046289972.1\|457357_458578_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6
WP_052653919.1\|458574_459204_+	hypothetical protein	NA	NA	NA	NA
WP_084010135.1\|459279_460815_+	hypothetical protein	NA	NA	NA	NA
WP_052653925.1\|462706_463747_+	hypothetical protein	NA	NA	NA	NA
WP_052653928.1\|464261_466112_+	hypothetical protein	NA	NA	NA	NA
WP_052653931.1\|466901_467138_+	hypothetical protein	NA	NA	NA	NA
WP_052653934.1\|467648_468533_-	hypothetical protein	NA	NA	NA	NA
WP_052653937.1\|468820_469033_-	CsbD family protein	NA	NA	NA	NA
WP_052654609.1\|470210_470486_+	DUF883 family protein	NA	NA	NA	NA
WP_052653940.1\|470580_470961_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_052653943.1\|471070_471508_+	hypothetical protein	NA	NA	NA	NA
WP_052653946.1\|472616_473015_+	hypothetical protein	NA	NA	NA	NA
WP_052653949.1\|473039_473627_+	hypothetical protein	NA	NA	NA	NA
WP_169835088.1\|473954_474659_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	5.6e-24	41.1
WP_052653954.1\|476481_478107_-	hypothetical protein	NA	NA	NA	NA
WP_084010136.1\|478462_478744_+\|transposase	transposase	S5WIU1	Leptospira_phage	8.6e-08	45.2

DBSCAN-SWA_6

487944 : 530302

Pseudomonas_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084009614.1\|487944_489006_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_052653975.1\|489196_489646_-	hypothetical protein	NA	NA	NA	NA
WP_157123067.1\|490168_490324_+	hypothetical protein	NA	NA	NA	NA
WP_157123069.1\|490444_490594_-	hypothetical protein	NA	NA	NA	NA
WP_046289972.1\|491210_492431_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6
WP_157123071.1\|494598_496917_-	hypothetical protein	NA	NA	NA	NA
WP_052653987.1\|497145_498630_-	hypothetical protein	NA	NA	NA	NA
WP_169835089.1\|499519_499696_-	hypothetical protein	NA	NA	NA	NA
WP_169835090.1\|500252_501374_-	protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA
WP_084010138.1\|501486_502221_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_052654006.1\|502417_502657_-	hypothetical protein	NA	NA	NA	NA
WP_084010139.1\|503259_503724_+	DUF932 domain-containing protein	NA	NA	NA	NA
WP_052654012.1\|503793_504036_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	2.1e-07	45.7
WP_084010140.1\|503995_504142_+	DUF1353 domain-containing protein	NA	NA	NA	NA
WP_157122856.1\|504156_505367_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7
WP_084010141.1\|506457_507138_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.2e-24	36.1
WP_084009614.1\|507071_508133_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_046290067.1\|509235_510501_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.9e-103	49.9
WP_046293183.1\|511311_512334_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_044453167.1\|512660_513482_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.7e-30	34.0
WP_044458677.1\|513478_514972_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_052654613.1\|515214_515724_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_169835091.1\|515786_516614_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_052654018.1\|516619_517789_-	hypothetical protein	NA	NA	NA	NA
WP_084010143.1\|518182_518569_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_052654024.1\|518807_519095_-	hypothetical protein	NA	NA	NA	NA
WP_052654027.1\|519208_519835_+	hypothetical protein	NA	NA	NA	NA
WP_157123073.1\|519961_520159_-	hypothetical protein	NA	NA	NA	NA
WP_052654033.1\|520595_522407_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.3e-27	25.8
WP_157123075.1\|522744_522903_-	hypothetical protein	NA	NA	NA	NA
WP_052654036.1\|523020_523362_+	hypothetical protein	NA	NA	NA	NA
WP_052654038.1\|523466_523757_+	hypothetical protein	NA	NA	NA	NA
WP_052654041.1\|524022_524262_+	hypothetical protein	NA	NA	NA	NA
WP_052653755.1\|525641_526637_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157122856.1\|529091_530302_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP011519

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 68494

Escherichia_phage(43.75%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157122856.1\|888_2098_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-98	62.7
WP_052654617.1\|2481_2835_-	hypothetical protein	NA	NA	NA	NA
WP_052654050.1\|2883_3588_-	hypothetical protein	NA	NA	NA	NA
WP_052654720.1\|3584_4004_-	hypothetical protein	NA	NA	NA	NA
WP_052654721.1\|4301_7268_-	conjugative relaxase	NA	NA	NA	NA
WP_052654722.1\|7278_8841_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_157123132.1\|8887_9490_-	endonuclease	NA	NA	NA	NA
WP_052654724.1\|9515_10103_-	hypothetical protein	NA	NA	NA	NA
WP_052654725.1\|10166_11177_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_052654726.1\|11163_12186_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_052654727.1\|12196_13435_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_052654728.1\|13436_14243_-	P-type conjugative transfer protein VirB9	NA	NA	NA	NA
WP_052654729.1\|14305_14980_-	type IV secretion system protein	NA	NA	NA	NA
WP_052654730.1\|14976_15840_-	type IV secretion system protein	NA	NA	NA	NA
WP_052654731.1\|15827_16235_-	hypothetical protein	NA	NA	NA	NA
WP_052654732.1\|16227_16443_-	hypothetical protein	NA	NA	NA	NA
WP_052654733.1\|16489_17158_-	hypothetical protein	NA	NA	NA	NA
WP_052654768.1\|17154_19827_-	type VI secretion protein	NA	NA	NA	NA
WP_052654734.1\|19849_20149_-	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_052654735.1\|20145_20511_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_052654736.1\|20681_21524_+	response regulator	NA	NA	NA	NA
WP_052654737.1\|21515_22298_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_084010160.1\|22290_24060_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	9.5e-28	25.8
WP_052654739.1\|24056_24551_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_084010161.1\|24727_25399_-	recombinase family protein	NA	NA	NA	NA
WP_052654740.1\|25734_26025_+	hypothetical protein	NA	NA	NA	NA
WP_052654741.1\|26021_26306_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_052654742.1\|26444_26714_+	hypothetical protein	NA	NA	NA	NA
WP_052654743.1\|26811_27528_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.7e-39	45.4
WP_169835099.1\|28034_29936_-	hypothetical protein	NA	NA	NA	NA
WP_052654745.1\|30313_31039_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	8.9e-41	43.6
WP_052654746.1\|31486_31987_-\|transposase	transposase	NA	NA	NA	NA
WP_052654747.1\|32106_32814_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	6.1e-18	31.5
WP_052654748.1\|33723_35949_-	hypothetical protein	NA	NA	NA	NA
WP_052654647.1\|36595_37297_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	8.6e-41	44.1
WP_065225911.1\|38254_41650_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_052654752.1\|42527_43220_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.2e-39	44.1
WP_052654753.1\|44079_44592_-	DUF2165 domain-containing protein	NA	NA	NA	NA
WP_084010166.1\|44998_46348_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.5e-36	30.3
WP_157123134.1\|46993_47638_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	7.0e-21	32.8
WP_052654756.1\|48145_48427_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_052654757.1\|48423_48921_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046290957.1\|50724_51741_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.3e-74	45.5
WP_046290956.1\|51737_52523_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.4e-79	58.0
WP_046289882.1\|52612_54151_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	6.3e-44	35.6
WP_065225913.1\|54996_56331_-	outer membrane porin, OprD family	NA	NA	NA	NA
WP_052654760.1\|56503_57535_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.3e-18	35.6
WP_052654761.1\|57531_58524_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.7e-11	25.3
WP_052654762.1\|58525_59410_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_052654763.1\|59423_60362_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_052654764.1\|60373_61987_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_052654638.1\|62149_62356_+	hypothetical protein	NA	NA	NA	NA
WP_052654639.1\|63098_63833_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	5.7e-19	31.3
WP_052654641.1\|64077_65445_+	amino acid permease	NA	NA	NA	NA
WP_065225914.1\|65823_67362_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_052654647.1\|67792_68494_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	8.6e-41	44.1

DBSCAN-SWA_2

73086 : 95738

Mycobacterium_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046289882.1\|73086_74625_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	6.3e-44	35.6
WP_046290953.1\|75596_76862_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
WP_052654661.1\|78055_78403_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	7.8e-35	63.8
WP_084010168.1\|78399_78858_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.7e-08	32.9
WP_065225916.1\|79049_80714_+	hypothetical protein	NA	NA	NA	NA
WP_052654668.1\|80995_82321_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.7e-56	35.5
WP_084010169.1\|83275_84598_+	serine hydrolase	G1DB24	Mycobacterium_phage	3.7e-08	35.2
WP_052654767.1\|85884_87096_+	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	1.0e-28	30.4
WP_052654670.1\|87092_88127_+	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_157123139.1\|88438_89755_+	hypothetical protein	NA	NA	NA	NA
WP_052654674.1\|90042_90999_-	restriction endonuclease	A0A0P0ZG22	Escherichia_phage	2.1e-159	84.5
WP_052654676.1\|90995_92465_-	SAM-dependent methyltransferase	A0A2L1IV91	Escherichia_phage	3.2e-215	74.4
WP_169835100.1\|93400_95113_+	hypothetical protein	NA	NA	NA	NA
WP_052653802.1\|95171_95738_-	recombinase family protein	M9Q1K0	Clostridium_phage	1.0e-28	43.1

DBSCAN-SWA_3

105957 : 110464

Sphingobium_phage(33.33%)

integrase,transposase

attL 100372:100387|attR 112320:112335

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
100372:100387	attL	NA	NA	NA	NA
WP_052654698.1\|105957_106656_+\|integrase	site-specific integrase	A0A1W6DWU1	Sphingobium_phage	3.1e-14	31.6
WP_052654700.1\|106735_106990_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_052654702.1\|106989_107352_+	type II toxin-antitoxin system PemK/MazF family toxin	A0A1S5SAB3	Streptococcus_phage	7.9e-06	34.4
WP_052654704.1\|107418_107613_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_052654707.1\|107894_108167_+	hypothetical protein	NA	NA	NA	NA
WP_052654709.1\|108234_108438_+	hypothetical protein	NA	NA	NA	NA
WP_052654710.1\|108450_108870_+	hypothetical protein	NA	NA	NA	NA
WP_046290953.1\|109198_110464_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
112320:112335	attR	NA	NA	NA	NA

DBSCAN-SWA_4

114321 : 117154

Mycobacterium_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046290953.1\|114321_115587_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.6e-104	50.1
WP_046289972.1\|115933_117154_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	2.4e-195	81.6

DBSCAN-SWA_5

125681 : 125885

Lake_Baikal_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052654047.1\|125681_125885_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	70.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011520

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011253

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP011518

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP011519

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection