CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011280	Sneathia amnii strain SN35 chromosome, complete genome	4 crisprs	cas14j,cas12a,cas4,cas1,cas2,DEDDh,DinG,cas3	0	13	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011280_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011280_1

6276-6367

Orphan

Consensus_repeat	Method
AGTAAAAAAAGAAGAACCAAAACCAAAACCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011280_1

>merge|NZ_CP011280|1|6276-6367|CRISPRCasFinder
AGTAAAAAAAGAAGAACCAAAACCAAAACCAAGGGTAGAAAGTTTGGATAAAATAATATCAGTAAAAAAAGAAGAACCAAAACCTAAACCAA

>NZ_CP011280|1|1|6276-6367|CRISPRCasFinder
AGTAAAAAAAGAAGAACCAAAACCAAAACCAA	GGGTAGAAAGTTTGGATAAAATAATATC
AGTAAAAAAAGAAGAACCAAAACCTAAACCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011280.1\|WP_046328107.1\|6665_6911_+\|RNA-binding-protein-S4	unknown	unknown	gnl\|CDD\|224109
NZ_CP011280.1\|WP_046328108.1\|8097_9321_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|237085
NZ_CP011280.1\|WP_046328113.1\|15346_15712_-\|PRD-domain-containing-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_052727729.1\|12_1401_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|234667
NZ_CP011280.1\|WP_052727730.1\|9313_10456_-\|amino-acid-racemase	unknown	unknown	gnl\|CDD\|143486
NZ_CP011280.1\|WP_046328105.1\|3431_6110_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|224118
NZ_CP011280.1\|WP_046328104.1\|2638_3448_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046328103.1\|1605_2649_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|224116
NZ_CP011280.1\|WP_046328102.1\|1402_1606_+\|S4-domain-containing-protein-YaaA	unknown	unknown	gnl\|CDD\|379097
NZ_CP011280.1\|WP_052727630.1\|11569_12793_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|179620
NZ_CP011280.1\|WP_046329209.1\|10458_11562_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|333967
NZ_CP011280.1\|WP_046328111.1\|13689_14994_-\|membrane-protein	unknown	unknown	gnl\|CDD\|378495
NZ_CP011280.1\|WP_046328114.1\|15761_16670_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379628
NZ_CP011280.1\|WP_046328112.1\|14990_15350_-\|DUF2620-domain-containing-protein	unknown	unknown	gnl\|CDD\|378513
NZ_CP011280.1\|WP_046328110.1\|12803_13679_-\|hydrolase	unknown	unknown	gnl\|CDD\|182128

Protein	Function_ID	Function_description	E-value
NZ_CP011280.1\|WP_046328107.1\|6665_6911_+\|RNA-binding-protein-S4	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	2.78743e-20
NZ_CP011280.1\|WP_046328108.1\|8097_9321_-\|phosphopentomutase	gnl\|CDD\|237085	PRK12383, PRK12383, putative mutase; Provisional.	0
NZ_CP011280.1\|WP_052727729.1\|12_1401_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|234667	PRK00149, dnaA, chromosomal replication initiator protein DnaA.	1.03486e-135
NZ_CP011280.1\|WP_052727730.1\|9313_10456_-\|amino-acid-racemase	gnl\|CDD\|143486	cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.	3.19166e-169
NZ_CP011280.1\|WP_046328105.1\|3431_6110_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP011280.1\|WP_046328103.1\|1605_2649_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|224116	COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair].	1.05657e-88
NZ_CP011280.1\|WP_046328102.1\|1402_1606_+\|S4-domain-containing-protein-YaaA	gnl\|CDD\|379097	pfam13275, S4_2, S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4.	3.57521e-27
NZ_CP011280.1\|WP_052727630.1\|11569_12793_-\|serine-hydrolase	gnl\|CDD\|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	1.90357e-83
NZ_CP011280.1\|WP_046329209.1\|10458_11562_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|333967	pfam00266, Aminotran_5, Aminotransferase class-V. This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.	2.18443e-13
NZ_CP011280.1\|WP_046328111.1\|13689_14994_-\|membrane-protein	gnl\|CDD\|378495	pfam10797, YhfT, Protein of unknown function. This family is conserved in Firmicutes and Proteobacteria. The function is not known but several members are annotated as being homologs of E coli YhfT, a protein thought to be involved in fatty acid oxidation.	0
NZ_CP011280.1\|WP_046328114.1\|15761_16670_-\|hypothetical-protein	gnl\|CDD\|379628	pfam14503, YhfZ_C, YhfZ C-terminal domain. This domain is often found in association with the helix-turn-helix domain HTH_41 (pfam14502). It includes YhfZ proteins from Escherichia coli and Shigella flexneri.	1.88475e-67
NZ_CP011280.1\|WP_046328112.1\|14990_15350_-\|DUF2620-domain-containing-protein	gnl\|CDD\|378513	pfam10941, DUF2620, Protein of unknown function DUF2620. This is a bacterial family of proteins with unknown function.	1.7974e-47
NZ_CP011280.1\|WP_046328110.1\|12803_13679_-\|hydrolase	gnl\|CDD\|182128	PRK09875, PRK09875, phosphotriesterase-related protein.	2.49995e-111

>NZ_CP011280.1|WP_046328105.1|3431_6110_+|DEAD/DEAH-box-helicase
MKKILKEEIEDIFKNIENTCIYISTSLKNMEYYEYILGKKGYNVTFFKTNVGSKKELIDINVRLINLLNKKKKNIIFIDFSLAMSIFFDKYDSFTLEVGKDYNLNKIEEKLQEYAYEKNYLITEMGQYSRRGDLIDVYSATMDNPIRLDFFDVELEKIKIFDIDTQRSYENLKEIQIYSNILRGDKVLITELTGKTTSFFIENLELVEHSLETMLLLDNNDKEKILARYEVLKEKSEIIEVALSENRNYQSEIEIKRKKELKKKMKYSSITELNKGDYVIHVEYGIGKYMGLKMMYDKEYLLIQYADDGELYVPVEKLYRIEKYINISNKEPELYKLGTKGFKKKHKKYKEEIEKVAKELIRIQAKRKKDNGICFMEDTVFQKQFEEKFEYLETEDQKKAIEDVKKDMQSYKIMDRIICGDVGYGKTEVAMRAAFKAIESGYQVALLAPTTILANQHYERFKKRFEGFPINIASYSRLSTRKGVLDDLISGKIDLLIGTHKILGDNVIFNNLGLLIIDEEQKFGVKHKEKIKEKKTNIDVLTLTATPIPRTLNLALLGIRDISVISTPPLQKLPIKTEILNFNDEEKLKKVILEEIKRDGQVFYISNDVKGMEDKVKYLKTLLPSFIGIEYIHGQLSAKEIKGKIDAFEKGEFQVLVASTIIENGIDIANANTIIIEGFNNLGLSQIYQLRGRVGRSKRQAYCYLLKSLKQTQKGLKKQESISEIENISSGGYVIAMEDMNIRGAGEILGNKQHGAIESFGYDLYIKLLNEEIKRQKGEITFNNFEVKMDLKDKGYIPNDYIKEAERIKIYKRIVELTKISEVDDIKDEIEDRFGKIPKVVNTFLDSVKIKIYCQKHKISKVEEKDDFLYFYFTNNVLKLSKKEVLEGEKDE
>NZ_CP011280.1|WP_046328104.1|2638_3448_+|hypothetical-protein
MKFKSLVDIVRENSSDIWSFLVPKEFLSETCLVIDKETAIIYTKDQIYANELSFFKDEYLDAIQKKAKEVKSIKIIVNPKRFKEEKVVIRKSEKKFESVLNEKKKEAEKIFSNIQDIDEKKYLVSCLALKLVKEYYSKENKEKKCENCGDYFKGPDKICIICRNIKRKKDVQDIIKYMLDDPYLRKEYFLKILSYDELTYDLARDEVLRLLYLKLQDKYRSGKDYEKELKDYLVMDIKSPYDLVLNLEGKKIIKRLETLFGGERNEKNT
>NZ_CP011280.1|WP_046328103.1|1605_2649_+|DNA-replication/repair-protein-RecF
MYIEEIVFNNFRNIRTNKITLSKNFNVLYGKNAQGKTSVIEAIYFLSTGKSFRTRKVLEQIKEGEKTLTLFSKTSVDNFSIQLNKEKKDFYISKNKVKYKEYIGKLLAISFSPEDISLIMDTPENRRRFFNYEMSQISKLYLNDLINFQKVLKVRNKLIKEKKMDSEIFKIYNDKYIFLSQRIYEFRKKYISDLSKYINQKYKELFDKKELIIRYEPSCDYNKLKEILEEKKEKELFIGFSIYGPQKDEYSFLIDNKKVKTFASQGEKKSVIFSLKLAQIEYIINSTQKTPIVLLDDITAYFDEIRKKIVLEYFKEKDIQCIFTSTEDIDICAKKMYVSDGEIKDEI
>NZ_CP011280.1|WP_046328102.1|1402_1606_+|S4-domain-containing-protein-YaaA
MEVKIDTEYIKLDQLLKFSGLADTGGIAKEVIQNGEVLVNGEVETRRGKKIRKEDVVEFRGEKVVVK
>NZ_CP011280.1|WP_052727729.1|12_1401_+|chromosomal-replication-initiator-protein-DnaA
MTQEELTVTWNLAKMVFLNSNGIEHQHLLNQVDIYDIRDGFCYLHSSSNYVVDELKKMKEKIQDAINQVLKLKGYAVEVVIKKEISTDMLEFEVTESNENETDKEEVLETGLSPKFTFDSFVVGQNSEYPYQCCMATIEALLDKRTPPYNPLLIYGDSGLGKTHLAQAAGNELIKKDFNKKVRYLTAEEFNNEYLCAIRKGNLKNNIDTAENFRQKYRSLDMIIIDDIQFFEKVFGKGDGSVEEEFFNTLNSLLIKDKQLIFISDRNPKKIKGLSERLKSRFLSGLNAEIKKPDYSTRVAILQTLCETNNMHMDNTILEYIADNVTKNVREMQGILKSISAKALLLKKNITIDLAKSVIGEQAEKLRASITAEKITQAVAQYFNVSEEEMKSEKRKSEILIPRQIAMYIMREKLEISLHETGKIFNKDHATVYNAVEKIASKIAKDDNIANDVKEITKRICE
>NZ_CP011280.1|WP_046328107.1|6665_6911_+|RNA-binding-protein-S4
MRLDKFLKITRIIKRRTIAQQLCDSDNVLVNGKAQKPSYSIKKGDELVVKYFNNTIKAKVLEIPKESLKKEDIGDYVSFEN
>NZ_CP011280.1|WP_046328108.1|8097_9321_-|phosphopentomutase
MSRFLIIVLDGFGVGYMDDVLKVRPRDFGSNTARHILEKLPDSKWENLEKLGLMNILDFETPFMKKVNVKIAGKSKLQHHGGDTFLGHQELMGTKTEKPLNKPFSFYIDTVEKKLLKKGYKVERKGVNVNFLWVNDCVAIGDNLETDLGQVYNVTTTFKNISFEDELKIAQVVRDIVKVERVIVFGGTKATTQSILDAAREKEGKYMGIDAPLSKVYEEGYMVRHMGYGVDPNNQVPTILTKNNIDVMLIGKVADIVYNKNGESFMNLVDTKTIFELTLKKLDDFHKGFMCINVQETDLSGHSQNTKRYANVLSIADKYIGKIIEKLNDDDILVITADHGNDPTIGHSQHTRENVPLLVYNKRLFNQKKNIDLGLRETMSDSANTVLEYFNIHENVEQGKSYLDLLK
>NZ_CP011280.1|WP_052727730.1|9313_10456_-|amino-acid-racemase
MFLKRLLDTNKAFVDASLDLYKKGLILPDSYCIDVDIFLENAKNILNEAKKYNINLFYMLKQVGRNPYLAKKLEDLGYKGAVCVDFKEVEVMMKNNLKLCNIGHLVQIPKNMLSRVIEYGVEIITVYSYDMIKEISNIALSLNKTQDIMLRILDENSEIYPGQEAGFSVNEVKELIPKLKDLKGVKLNGITSFPCFLYSPDEKCIKETNNLFSVLEVNEFLKNQNLYVKHINLPSVSTVENIKKIYSYGGTDAEPGHALTGTTPLNIDSGIEIPAYLYISEISHVFKNNSYFYGGGYYPRGHMKHGYIDNEIVNVNNFNATNIDYYLSLEGKYNIFDPIILCFRTQMFVTRSDIVLIEGIHSNNIHIVGIYNTQGDKKNV
>NZ_CP011280.1|WP_046329209.1|10458_11562_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MKTYPLQSITLEEAMEKQFRLVDLIGKYINGKEILDLGDLGVEKTNNMPIRTRTIEKILANFFNAEDAFLVRGSGTNALRLTFFEFLKNENTILVHDGPIYKTSEFSLNSMKVNIKKYNFNDLSTLREYIVENNIKVVLLQHTRQKLDDKYVLKEVIKKIKEIDNNIKIVVDDNYAVLKTPENGVEMGADISAFSCFKLLGPVGIGLIIGKREIIENMRKHNYSGGSQVQGFEAMEVLRGLVYAPVALSIQAKQIEGLYNILKDKKRFPYIKDVYIANSQSKVVLVEFCEHIAKNILKQTVKLGALSHPVGAESKFEMNPLIYRVSGTFIDTDPSLAERMIRINPNRAGAENIARILEKAYFMERGE
>NZ_CP011280.1|WP_052727630.1|11569_12793_-|serine-hydrolase
MKKIILIFCSILFSVFTFTKSLNDIQTITEKYISNKTMPGAVVLVSKNGHILYNKAFGYAQVLEDDKEKLRPMKTDTIFDLASLTKIFATTQVIMKLVSEGKINVNDKVSKYIPEFAKNGKEDVKIKDLLTHTSGLTPWLPTYYHVKNSDEELKYICNLPLEYKTGSNRKYSDFSFMTLAFIVEKVTHKKLNDYVLEEIYKPLHLKRTRFLPLEVFSQNQIASTSHGNPFEQKMIYDDNFGYKINEEYNSFRYWRRHTLTGLVNDGNSYYANNGVAGHAGLFSTAHDLYVLGEVLLNNGKYKSVRLYNKNVVDEFTKIESKFGHGYGYEINRGGVDKGYMGKYATNKFVGHTGFTGTQVVYDLDNKIQVIILTNKQNYGVDSDGSYKSTWKYAREIMNLVGDVLYKK
>NZ_CP011280.1|WP_046328110.1|12803_13679_-|hydrolase
MLQNGYTLMHEHMTIDLSGQKHNLDCKVDCIDEITKEMKKLYSKGVRNIVEVTNRGMGRNVKNIVKISKESGINFICSTGFYKEPFLPDYVYEMDKEEIAELLINDIEIGIDGTGIKAQLLGEIGTSKDHMTKEEEKIFESIVIAHKKTGVPISTHTTLGTNALGQIEFFEKNNVDLSKVNIGHVDLSGDVQYIIEILSKGVYISFDTIGKNNYLLDSKRVEMLKILQDMNLLNKVFLSQDISRKSNMEFMGGIGYSYIFDSFIPMLKEKGITDESLDLMLCKNPMNFFNK
>NZ_CP011280.1|WP_046328111.1|13689_14994_-|membrane-protein
MISRIIVMALLAGLASILANQSIAVFNDGLRPLIPEYLEKRMDRKSLLATSFALSFGLVIGFGIPFSIGKSVILIHSILLGTDIIGTMCPDNKKGMAISGIIGALYGIGLVLGLKVIVDVFAKLPVNFLPNLTSIGSPIIVAFAIFPVLVVGYQYGVKKGAFSLIIVLIIRQLISLFGKFTFGEAKIALNADGIALFAGIVIMLIFAVMDKTEVTNSNEQLIGIFSERVARVKKNILILSIMGGLVAAAVSLNMLAGDPISLNLMQEGKLSDAGIVALARTIGFIPLVATTAITTGVYGPAGLTFVFVIGIFVRNPIIAFVLGAIVLAIEILLLEQIAKLLDKFPGVKACGDQIRTSMTKVLEVAILVGAMIACNDMAGKNGLGFLFVIGVYLLNRAAKKPLVDMAVGPIATIGFGIILNILFLLKLFVPVVAK
>NZ_CP011280.1|WP_046328112.1|14990_15350_-|DUF2620-domain-containing-protein
MKIVVGGQIDKENVKKILNAEFPDASVDVKSDIDAAMGLKSGNYDYYFGACNTGGGGALAMAIAIVGANKCLTVASPGKVLTEEEVKKGIEDGKIAFGFTPNATEKSIKMIKKFIGGKL
>NZ_CP011280.1|WP_046328113.1|15346_15712_-|PRD-domain-containing-protein
MNELINRLNLLLKSGVLHEENMKTVLNMLNYLKEKYDLNLTEENSSMLVTHIAMYLERKDKESIEGLDIDSLNELKESKKYTLALQIIQNLEKDVLGPINDSEKTFILAHLINFLEGVDRV
>NZ_CP011280.1|WP_046328114.1|15761_16670_-|hypothetical-protein
MEKIRTLNKVDIAIITVARDIMGLKIGDRLKSVKEYSEELQMSVGSVQKAFEILESEKCISLSKKGVFGKILEAKYDDKLIKKAFINSIVGVMPLPYSKRYEGLAMAIKNSFEKHGITFYFAYMQGSRVRLKLLESGIYDFALMSNLAFKNSDKKNIKKVFSLGPESYVSKHVLLKVPTKSKKIRVGIDKNSEDQYFLSNQYFSGKDYDVIDVNSDNIVKDMQNSLIDQAILSLDEIEEKLINGIEVQDIFDKEYINLANEAVIVINKSDKLMESLVKNILDIKYIGKIQKDVLEKIIVPRY

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Crispr_ID: NZ_CP011280_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011280_2

96177-96265

Orphan

Consensus_repeat	Method
TAATAAAGTATACCACTAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011280_2

>merge|NZ_CP011280|2|96177-96265|CRISPRCasFinder
TAATAAAGTATACCACTAAAAAATAAAAAAGCAATATTATTTAGAAAAATATTGATATTTTTAATTTAAAAAAGTATACCACTAAAAAA

>NZ_CP011280|2|2|96177-96265|CRISPRCasFinder
TAATAAAGTATACCACTAAAAAA	TAAAAAAGCAATATTATTTAGAAAAATATTGATATTTTTAATT
TAAAAAAGTATACCACTAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011280.1\|WP_046328178.1\|106101_106473_+\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP011280.1\|WP_046328165.1\|90921_91767_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225011
NZ_CP011280.1\|WP_046328170.1\|94525_95839_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP011280.1\|WP_046328164.1\|89628_90795_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_CP011280.1\|WP_046328179.1\|106488_106959_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP011280.1\|WP_046328172.1\|96277_96478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046328175.1\|98319_100197_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP011280.1\|WP_046328169.1\|94122_94524_-\|DUF3284-domain-containing-protein	unknown	unknown	gnl\|CDD\|378692
NZ_CP011280.1\|WP_046328163.1\|88134_88371_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046328171.1\|95843_96149_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP011280.1\|WP_046328180.1\|106976_109055_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP011280.1\|WP_046328177.1\|104547_105840_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP011280.1\|WP_046328166.1\|91759_92077_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_CP011280.1\|WP_046328167.1\|92086_93463_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP011280.1\|WP_084710330.1\|100454_102245_+\|NAD-nucleotidase	unknown	unknown	gnl\|CDD\|211667
NZ_CP011280.1\|WP_046328176.1\|102410_104213_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP011280.1\|WP_144406221.1\|96477_97548_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_052727637.1\|88697_89399_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP011280.1\|WP_046328174.1\|97673_98330_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP011280.1\|WP_046328168.1\|93473_94121_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099

Protein	Function_ID	Function_description	E-value
NZ_CP011280.1\|WP_046328165.1\|90921_91767_-\|hypothetical-protein	gnl\|CDD\|225011	COG2100, COG2100, Predicted Fe-S oxidoreductase [General function prediction only].	0.00416109
NZ_CP011280.1\|WP_046328170.1\|94525_95839_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	9.54469e-127
NZ_CP011280.1\|WP_046328164.1\|89628_90795_+\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	2.14417e-169
NZ_CP011280.1\|WP_046328175.1\|98319_100197_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP011280.1\|WP_046328169.1\|94122_94524_-\|DUF3284-domain-containing-protein	gnl\|CDD\|378692	pfam11687, DUF3284, Domain of unknown function (DUF3284). This family of proteins with unknown function appears to be restricted to Firmicutes.	2.75156e-11
NZ_CP011280.1\|WP_046328167.1\|92086_93463_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP011280.1\|WP_046328171.1\|95843_96149_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.03147e-40
NZ_CP011280.1\|WP_046328180.1\|106976_109055_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP011280.1\|WP_046328177.1\|104547_105840_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	5.40863e-76
NZ_CP011280.1\|WP_046328166.1\|91759_92077_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	6.88225e-37
NZ_CP011280.1\|WP_046328178.1\|106101_106473_+\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	1.69023e-84
NZ_CP011280.1\|WP_084710330.1\|100454_102245_+\|NAD-nucleotidase	gnl\|CDD\|211667	TIGR01530, Probable_5'-nucleotidase, NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	0
NZ_CP011280.1\|WP_046328176.1\|102410_104213_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	3.50215e-12
NZ_CP011280.1\|WP_046328179.1\|106488_106959_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	2.60103e-99
NZ_CP011280.1\|WP_052727637.1\|88697_89399_+\|hypothetical-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	2.48632e-15
NZ_CP011280.1\|WP_046328174.1\|97673_98330_-\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	2.16155e-47
NZ_CP011280.1\|WP_046328168.1\|93473_94121_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	9.009e-14

>NZ_CP011280.1|WP_046328171.1|95843_96149_-|PTS-sugar-transporter-subunit-IIB
MTKILLICSAGMSTSFMVEKMKKASKDKNIETDILAIPDAKANEYVGKVDIVLLGPQVKYLLPSMKELFKDTPVTVIDMMSYGTMNGEKVLEDALKLLKGE
>NZ_CP011280.1|WP_046328170.1|94525_95839_-|PTS-sugar-transporter-subunit-IIC
MKSIMNWVECSFIPKVTKIASQRHLVAIRDSFIAIMPITMVGSIAVLLNVFFRDIPTANGYTKFVEVMNPLISINGIVWFASFAILSLAFVLSLGYNLAQSYKVNPIAGALVAFASFIALLPQEAVFTTDINGVATQVSSWGFLNVNYLGAQGIFPAMIIGFISSIIYCKLMTHKVTIKLPDSVPPAVNKAFASIIPGVVAIYVCSIISQVIFKLTNKSLIDIISLYIQKPLLGLSQGLLSVVILAFLIQFLWFFGLHGHNVLAPILDGIYQPALLANVEHIAKGGTVKTLPYLWTRGSFDAYLQLGGSGMTLALIISIFIFSKKKANRAVSKMALPMGIFNINEPMIFGMPIVLNPLYFIPFVLVSVVGAIIAYVLTAIGVIPPVYVIVPWIMPTGLYAFFATGGSIMAALVSILNIFVAFLIWTPFVLIANKLDD
>NZ_CP011280.1|WP_046328169.1|94122_94524_-|DUF3284-domain-containing-protein
MKLKYTMNCKKEVFFNFLYENLQKEFHGEKTIKKDIVSKMGKKVPCTLTIDYLKENVGYKLSIKSSLGINTIEYIIIPCDNESICIEYIEEYFTNSFLKKQNNILLEVLFGFFLKRKKIKTFRSIENYLIGKK
>NZ_CP011280.1|WP_046328168.1|93473_94121_-|GntR-family-transcriptional-regulator
MAEKLYEKILNELIEELKYFKVDSHFYSERSLASYKNISKLTARKIISILVEEGYLYKKNNIGTFVKKTPNRNIVSFAFFDSTNTFKLIYLNLSYSIDESIFNDYKNSERYMFITSKNKNIMSIEEVLLSPDPENEKLRNVFKDINRENLEILKEFKIQQTIEAVITPVKFSRFLNVKLNTPIVLITNKVYDGKTNLCAVIKSYLNPNNNKITIY
>NZ_CP011280.1|WP_046328167.1|92086_93463_-|glycoside-hydrolase-family-1-protein
MIKFKDGFFWGSSTSAEQSEGRLENDGKMLTVWDKFFSDSPYKFHDNIGPETTSTIYKHFKEDIKLLKQTGHTAYRTSISWARLIDDKGNINQKAVTFYNSYFSLLKENGIKVFVNLYHFDTPLYIQEKYNGFVQKETVKLYAKYAKTCFELFGDLVDSWFTFNEPIVSVECGYLLQYHYPLEVDSKKAVQVAYNIALASALAVKEFKKLNLKSKIGIILNITPSYPRSNNEFDVKAAHIADLFATNSFLDPCVKGEYSKDLVEILKKHDLLPSYTEEELKIIKENTVSFLGINYYQPLRVCAKANLPNDNAPFMPTYYYDSYVMPGRRINKYRGWEIYPHALYDIAKNIQNNYGNIEWFVAENGMGVEDESRFKKDGIIQDDYRIDFIKQHLVELHKAIEEGSNCKGYMHWTFIDCWSWLNAYKNRYGFIELDYNTQKRYIKKSGYWFKELSDNNGF
>NZ_CP011280.1|WP_046328166.1|91759_92077_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MKEEMETIVFEIISNAGCVKGICYEALDLAIEGKIDEAYKKLDEANEYLLKAHEIQTNLIQKEVNGEKVELSVLFVHAQDHLMSCIEIKNLVSKLIKLCEVKNNG
>NZ_CP011280.1|WP_046328165.1|90921_91767_-|hypothetical-protein
MAKRLLSCSSSELLNMSKDELLEAIKLSCGRTVLSENVASSATLCFNVTNSEIARAFGADLILLNCINLFDIQIQALPETNDPICYLRKLVGRPVGVNIEPKDCNKEALLLANKYGFDFICLTANPNTNVRNTDILECIKLSKKYYKGIIIAGKMHSSGIDEDVINLETAKQFIESGIDILLVPAVGTVPGLSESDLTTIVKYAHKNKKLCMSTIGTSQESSSKEVIRYIALKNKIIGVDIQHIGDGSFANVGWYENIFELSKTIRGLTHTLRLIASSNLR
>NZ_CP011280.1|WP_046328164.1|89628_90795_+|amidohydrolase
MLIDELFREIDENKDLMVKIRRHLHMYPEVSFGEVNTSKYISDFYASLDCEVKTNVGGNGVLVAIDTGNAGPSIGLRADFDALPIQEETDLEYSSRVSGVMHACGHDAHTAYLMVLAKILIKHKKELKGKIYIIHQHAEEMTPGGAIGMIKTGLLDNIDNFFGIHVMSEFELGKVYYHKGETQQGRSKFTIKLIGKGGHGSSPHSANDAIVAGSYLVMALQTIVSRKLSPFENGVVTIGSFDGKGTFNIIKESVTITGDVRAMSDKTMKKIEEQIYSIANGVAQTYQMKVDVDFKLDYPILYNDSDMTDLVISAVKSSGLPVEDCGALPPSEDFSHYARLKPSCFFYVGANKKGTKSYPHHNSHFVIDEGCLEICAKALASVVVKYMS
>NZ_CP011280.1|WP_052727637.1|88697_89399_+|hypothetical-protein
MKELHPYSRAISLNKREKSRCKNKFNIEFKNIFFRIINIISKNNIVYGVLSVPVKPSKQNRFLELLDYISQKCNLKNLSSEFLCIENYSDQKELNSEEREKNIKGVFKYNGNLKGKTIILIDDIITTGATLRECIKVLKDAEAKEIIIVVLAINQIESYYYTLNTPEVICPVCREIMKLNANGETKEFFYSCIKCYKNKGKSKTIGFSYALKKVLEEENEKLKKVRENEDFSF
>NZ_CP011280.1|WP_046328163.1|88134_88371_+|hypothetical-protein
MFTVTEELKGLVIDYDSFENISVDEIRSLNNEIKCIIITSKFDNKKYFDTELKGINILYLDASEKNLSPNIYIHIKKY
>NZ_CP011280.1|WP_046328172.1|96277_96478_-|hypothetical-protein
MSIVIGYRKPYSNIIVAIMKKYSLYTETELIKNIELIIPVSKVLKGKKISYITYSENTDGIFFNLG
>NZ_CP011280.1|WP_144406221.1|96477_97548_-|hypothetical-protein
MLYEVYKNFFKNDYDGINISSLFKSDKDAFFKYIFTFYSPQNVENNFSRLDELLYLKYFKINSLILYKTLDKELRKRRVYIKEKDFIELFTKNLLYLYEYIKISHILSKNSKVYLSNTYNKDNFLLQNTFKPLLIRENVEPFSVSNFQDKGINDKFYIIFDKLVNINDKKYQEYILQKRSEYTAIHLPNYNVFKQKDIKSYISNKKFRNYKAFHIKGKKNIDCINIYVGDISKDEFTELFNILSILFNGKRYNIYMKKTFDEFKKVSKKNINIFLKSKNELIKELWWTNETRYILSTSNLNEDLILLFQNNLNKKLNVLKTKEFKDFSEKERISFYNTFHYANNRVNAFIDYLKED
>NZ_CP011280.1|WP_046328174.1|97673_98330_-|HAD-family-phosphatase
MKFKNIKLFIFDMDGLVFETERLYLKFLPESISELGFTANEDIIRGSIGMNMKSTRALYLNHYGKDFPFETLSKLVHKKLMTYNEKNGLDLCPHVLDLLSYLKERKLPCVIASSSNRNMIQTYLKRNNIEDYFVDIYSGDEVTNGKPDPEIFLLAAEKQNISPDNCMVFEDSYNGIKAAHSAKMKAIMVPNILQPNEEMKALADLILDDIYMIKDYLE
>NZ_CP011280.1|WP_046328175.1|98319_100197_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MAFIQFNNVYKSFLDKQILKDVSFSINSSDRIGLIGLNGVGKSTIINIILSKEGINSGTVFVDKNINIGYISQVHHFSDENNTVFEELDTVFSELHKVYRKIEKMNLELATNPKLKDELDKLYNIFNANDGYSIDYLLNQVINGLDLTNLKDSLICKLSGGEKTRVSLAKLLLQKPDLLILDEPTNHLDLASIEWLEEFLKKYNKAFLLVSHDRVFLDNVCNKIFEIENMKLHEYSGNFSSFMIQKEMILKGEIKEYEKQQDRIKKLNEYIERNRAGRMAKQARGKQKLLSHLLVHDNPDYTPPKMKLKFEIKNTTSDSVLTLEDVCKNFDNKTLLKDICLKVYKGERIGIIGKNGCGKSTLLKLIANKLSLDSGSIKIAQNAVMGYFDQNVDDLYPDNTILQEINTNINYTQEYLRSMAASFLFKDEDVDKRIKDLSGGEKVRVSFIKLIQKHPNFLLLDEPTNHLDIYSIEILEQALSDFQGTLVVVSHNRHFLDSVCNTIYVLDENGLTKFKGNYNDYKESIKKKTVIEKEKDTKNEYILQKEKSKKISKLKRLISSTEEELEKIGKRKSEINKAMFLPDVAKDIEKLVNLQNELDDLSKKEDTLMEEWQKYSLDLEEENEI
>NZ_CP011280.1|WP_084710330.1|100454_102245_+|NAD-nucleotidase
MKKNSLILITILATTFQSYAKNYPLNLSIVHMNDTHSHFEPETVKFTINGKPTSVKIGGFPEVIHELNEYRKSLPKNRQPLVLHAGDALNGTLYYTLFKGVSDAKMINAAKFDYLTLGNHEFDSGDKGLKIFLDNLKVPVLSSNVIPNKKSILYGYWKPYAIKKIRGEKVGIIGLEFAEKTRESSSPGKDIKIIDEVQAVQKYINILKKKGVNKIILLSHAGVKGNTRVAKNTKGLDVIISGDSHFLFGNDEMRKFKLPVISEYPTKVMSLSNEPVYIVEGWEYTKLLGRLDIKFSKSGIVKSIKGNPVIVYHEDSSFERKDENGKKYIPKGKEREEILETLKNTKTFKLAKPDKKAKKIFDKYYKLKKQLGDQVIGELTGDVMPGGSEHRIPHKNNPKGSIATRFVAETMLTQMRSFGENSKVDFAIQNSGGVRQNINTGKWTYNDAYNLLPFGNTLYLLNMKGSQVKNVIEEALDYGLGGGSTGSFPYGAGLRYEANQYKDKNGKRIVKIEVENAKTGKFEDLQDDKDYVVVTNGYIAKGKDGYKTFGKIQGKDTFIPDAQSFIKFLQMHKNFKTYTDSNVIFHFDENNEVKTK
>NZ_CP011280.1|WP_046328176.1|102410_104213_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKKLIIFYSILLGFFAFAYEFRDEYSLKENQQNDFILDPNIYDDNGNHFSFYNVVNLAPNSKMNFIVKTNYYDPNCSITYPSLVEISSLNSNNGKIEIKHITDNGGILLGIDEYEEGVNNISGDGITFKINVSSKSSEITSLGLCPGIHGLTSSSTLMDFISKKGTDFITIMALKNTNTKLYLELSDESIKDLKQFYLVDKHTDLIPFSFSTLKNNIQYLSKDEINPMYIKSYAPIIKKFNVFDLSPKEKDDVIYKTVKLIKKNVDPDGNGGSSEYNYLYDLVIDNDIKNAVDNNNLSSISEDKKNNFMMKLIGVGISYGNNIITYEPFFISHFISGLKVLYNPIINDICNDSNSLYKLHRDGLDEYNIPSRKGMWLKSTLGLDNGLYNTMQVGYNYKINNTLVGLSLAHRMNFSNDKAKSTSILGYLNNTSKIGTFELIPKVSFVSGNTKFLKYNTLDLGIKGKYSKEFKLNNSFSLVPEGSLTYSTSKGQEFKIPNTYISVKSDKIDSLIGELGLKLMYKGQYIKASALREFLGDAKYKFTDPRDEATVKLSNKDTWFNLGIGGEYSIRDKAYLQYSLEKEFGNKLSNKFKFNLGVVF
>NZ_CP011280.1|WP_046328177.1|104547_105840_+|ATP-binding-protein
MKKRDTYLNKLIEFKDTSLIKVITGLRRTGKSSLLKLMVMYLKKQGIKSDRIIEMNFESYRFSKMNCDDMYEYVNKKVNNSDEKIYIFLDEIQKVQNWEEVVNAFRVDFNSDIYITGSNAYLLSSEYATYLSGRYVEIKMLPLSFKEFLYFNNYKVEKEINALGNDKFEIFDYKGLKVEIKEAFEYYLHFGAMPQIAELGLEQEKVLLLFDGIYSTVVVKDILEREAIKGRNKVTDMLLLKKIVMYLADNIGNNLSTSNVAKVLANEKLVDRKTTSVNTIQTYIQSLLEAYMFYEIKRFDIKGKQYLKTLGKYYIVDLGLRNYLLGFRNRDSGHIIENIVYFELLRRGYDVAIGKVGDLEIDFIATKVNSKVYVQVTESMLEESTREREIKPLKKIDDNYEKIILTLNCGLEKDYDGIKVYNLIEWLLGE
>NZ_CP011280.1|WP_046328178.1|106101_106473_+|30S-ribosomal-protein-S12
MPTINQLVRFGRSTSEKKKKSPALKANPQKRGVCVRVYTTTPKKPNSALRKVARVKLVNGIEVTAYIPGIGHNLQEHSIVLIRGGRTKDLPGVRYKIVRGALDTAGVVNRKQARSRYGTKRPK
>NZ_CP011280.1|WP_046328179.1|106488_106959_+|30S-ribosomal-protein-S7
MSRRRQAIKRDVLPDSKYSDKVVTKFINGLMVDGKKSLAESIFYNALEAIEQETNESGIEVFRRAMENVRPQLEVRSRRIGGATYQVPVEVRKERQQTLAIRWLVKYTRERKEYGMIEKLKKELIAASNNEGGAVKKKDDTYKMAEANRAFAHYKW
>NZ_CP011280.1|WP_046328180.1|106976_109055_+|elongation-factor-G
MARKVELKDTRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDYMEQEQERGITITSAAITCFWKKHRINIIDTPGHVDFTVEVERSLRVLDGAVAVFSAVDGVQPQSETVWRQADKYHVPRIAFFNKMDRTGANFEMCVDDIKKKLGGNGIPIQLPIGAEEHFEGIIDLITEKEYIFHDETMGADYEIRDVRPELKDAVEEARHNLIEAVVETDDALMEKFFADEPISEEEIKVALRKATIDGIVVPVTCGTAFKNKGIQPLLDAIVAYMPSPLDIPSIEGINPKTDAEEVRHPSDSEKFSALAFKIVTDPFVGRLSFFRVYSGMLQKGSYVLNSTKGKKERMGRLLLMHANKREELEEVYTGDIAAAVGLKDTTTGDTLCDESAPIILENMEFPDPVISVAVEPKTKADQEKMGTALSKLAEEDPTFVVTANQETGQTVISGMGELHLEIIVDRMKREFKVEANVGKPQVAYRETILSNSDVEEKYIKQSGGRGQYGHVKIKVEPNKDKGYEFINEITGGVIPREYIPAVDKGIQEALQAGVVAGYPVQDVKVTLYDGSYHEVDSSEMAFKIAGSLAIKSALKQAQPILLEPIFKVEVTTPEEYMGDVIGDLNSRRGQVSGMNDRNNAKIIDAHVPLSEMFGYATDLRSKTQGRASYSMEFEKYVQVPKNISDKVVEERQGK

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Crispr_ID: NZ_CP011280_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011280_3

588428-589278

TypeV-A

Consensus_repeat	Method
TATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	CRISPRCasFinder
ATTTGAAAGCATNTTTTAATTTCTACTATTGTAGAT	CRT
ATTTGGAAGCATATTTTAATTTCTACTATTGTAGAT	PILER-CR

13 spacers

cas2,cas1,cas4,cas12a

The CRISPR arrays of NZ_CP011280_3

>merge|NZ_CP011280|3|588428-589278|CRISPRCasFinder,CRT,PILER-CR
GATTTGAAAGCATCTTTTAATTTCTACTATTGTAGATCAAGGGTGGTACAACAGATTAAATAATATTTGAAAGCATCTTTTAATTTCTACTATTGTAGATCCTTTAATTCTTTTACAAAAGTTAATTATTTGAAAGCATCTTTTAATTTCTACTATTGTAGATAGTTGTTTTCACATGTTGGTATATATATTTGAAAGCATCTTTTAATTTCTACTATTGTAGATCGATATAATCTACATAGTTTGGATAATATTTGAAAGCATCTTTTAATTTCTACTATTGTAGATAAGAAATGTTGCTTGCTCACATTCAAATTTGAAAGCATCTTTTAATTTCTACTATTGTAGATAGTTGTTTTCACATGTTGGTATATATATTTGAAAGCATCTTTTAATTTCTACTATTGTAGATTATATCCGTTGTGTTATTGTCTGGTAGTTTGAAAGCATATTTTAATTTCTACTATTGTAGATGAAGAAGAATTAATCGTGCGTTAATCGATTTGAAAGCATATTTTAATTTCTACTATTGTAGATTAGAACATATTAATCGTAGTTGCACAGATTTGAAAGCATATTTTAATTTCTACTATTGTAGATTGGAATAAATAATGCAACAATTGTAATATTTGGAAGCACATTTTAATTTCTACTATTGTAGATTAGTATCATATCTTTATACTTACCATCATTTGGAAGCATATTTTAATTTCTACTATTGTAGATGGGAAACTAATGCTAGCAATGGTGAAATTTGGAAGCACATTTTAATTTCTACTATTGTAGATATATGTATTTTGAATATTAGGTATCTTGTTTGGAAGCATATTTTAATTTCTACTATTGTAGAT

>NZ_CP011280|3|3|588428-589278|CRISPRCasFinder
GATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	CAAGGGTGGTACAACAGATTAAATAA
TATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	CCTTTAATTCTTTTACAAAAGTTAAT
TATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	AGTTGTTTTCACATGTTGGTATATA
TATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	CGATATAATCTACATAGTTTGGATAA
TATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	AAGAAATGTTGCTTGCTCACATTCA
AATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	AGTTGTTTTCACATGTTGGTATATA
TATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	TATATCCGTTGTGTTATTGTCTGGT
AGTTTGAAAGCATATTTTAATTTCTACTATTGTAGAT	GAAGAAGAATTAATCGTGCGTTAATC
GATTTGAAAGCATATTTTAATTTCTACTATTGTAGAT	TAGAACATATTAATCGTAGTTGCACA
GATTTGAAAGCATATTTTAATTTCTACTATTGTAGAT	TGGAATAAATAATGCAACAATTGTAA
TATTTGGAAGCACATTTTAATTTCTACTATTGTAGAT	TAGTATCATATCTTTATACTTACCAT
CATTTGGAAGCATATTTTAATTTCTACTATTGTAGAT	GGGAAACTAATGCTAGCAATGGTGA
AATTTGGAAGCACATTTTAATTTCTACTATTGTAGAT	ATATGTATTTTGAATATTAGGTATCT
TGTTTGGAAGCATATTTTAATTTCTACTATTGTAGAT

>NZ_CP011280|3|1|588429-589278|CRT
ATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	CAAGGGTGGTACAACAGATTAAATAAT
ATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	CCTTTAATTCTTTTACAAAAGTTAATT
ATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	AGTTGTTTTCACATGTTGGTATATAT
ATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	CGATATAATCTACATAGTTTGGATAAT
ATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	AAGAAATGTTGCTTGCTCACATTCAA
ATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	AGTTGTTTTCACATGTTGGTATATAT
ATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	TATATCCGTTGTGTTATTGTCTGGTA
GTTTGAAAGCATATTTTAATTTCTACTATTGTAGAT	GAAGAAGAATTAATCGTGCGTTAATCG
ATTTGAAAGCATATTTTAATTTCTACTATTGTAGAT	TAGAACATATTAATCGTAGTTGCACAG
ATTTGAAAGCATATTTTAATTTCTACTATTGTAGAT	TGGAATAAATAATGCAACAATTGTAAT
ATTTGGAAGCACATTTTAATTTCTACTATTGTAGAT	TAGTATCATATCTTTATACTTACCATC
ATTTGGAAGCATATTTTAATTTCTACTATTGTAGAT	GGGAAACTAATGCTAGCAATGGTGAA
ATTTGGAAGCACATTTTAATTTCTACTATTGTAGAT	ATATGTATTTTGAATATTAGGTATCTT
GTTTGGAAGCATATTTTAATTTCTACTATTGTAGAT

>NZ_CP011280|3|1|588992-589278|PILER-CR
ATTTGAAAGCATATTTTAATTTCTACTATTGTAGAT	TGGAATAAATAATGCAACAATTGTAAT
ATTTGGAAGCACATTTTAATTTCTACTATTGTAGAT	TAGTATCATATCTTTATACTTACCATC
ATTTGGAAGCATATTTTAATTTCTACTATTGTAGAT	GGGAAACTAATGCTAGCAATGGTGAA
ATTTGGAAGCACATTTTAATTTCTACTATTGTAGAT	ATATGTATTTTGAATATTAGGTATCTT
GTTTGGAAGCATATTTTAATTTCTACTATTGTAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011280.1\|WP_046328603.1\|592595_592847_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_052727674.1\|586450_587008_+\|type-V-CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|213941
NZ_CP011280.1\|WP_046329268.1\|592389_592599_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046329269.1\|593148_593352_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046328608.1\|595873_597556_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP011280.1\|WP_046328606.1\|593908_594109_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046328602.1\|589863_591261_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234767
NZ_CP011280.1\|WP_046328594.1\|580168_580498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225819
NZ_CP011280.1\|WP_046328598.1\|582297_583209_-\|DUF4116-domain-containing-protein	unknown	unknown	gnl\|CDD\|372614
NZ_CP011280.1\|WP_052727676.1\|597687_597864_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_CP011280.1\|WP_046328596.1\|581457_581649_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046328600.1\|587004_587997_+\|type-V-CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|213942
NZ_CP011280.1\|WP_046328601.1\|588001_588274_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP011280.1\|WP_052727673.1\|579588_580164_+\|N-acetylmuramidase	unknown	unknown	gnl\|CDD\|381608
NZ_CP011280.1\|WP_084710347.1\|583446_586446_+\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	cas12a	cas12a_cpf1_CAS-V-A	gnl\|CDD\|275131
NZ_CP011280.1\|WP_046328597.1\|581770_582280_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046328609.1\|597895_598858_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046328607.1\|594144_595884_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP011280.1\|WP_046328604.1\|592908_593103_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011280.1\|WP_046328595.1\|580839_581406_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011280.1\|WP_052727674.1\|586450_587008_+\|type-V-CRISPR-associated-protein-Cas4	gnl\|CDD\|213941	TIGR04328, hypothetical_protein_HMPREF9709_01098, CRISPR-associated protein Cas4, subtype PREFRAN. Members of this family are the Cas4 protein of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	3.74493e-60
NZ_CP011280.1\|WP_046328594.1\|580168_580498_+\|hypothetical-protein	gnl\|CDD\|225819	COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism].	0.000785012
NZ_CP011280.1\|WP_046328601.1\|588001_588274_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.43572e-13
NZ_CP011280.1\|WP_052727673.1\|579588_580164_+\|N-acetylmuramidase	gnl\|CDD\|381608	cd13926, N-acetylmuramidase_GH108, N-acetylmuramidase domain of the glycosyl hydrolase 108 family. This domain acts as a lysozyme (N-acetylmuramidase), EC:3.2.1.17. It contains a conserved EGGY motif near the N-terminus, the glutamic acid within this motif is essential for catalytic activity. In bacteria, it may activate the secretion of large proteins via the breaking and rearrangement of the peptidoglycan layer during secretion. It is frequently found at the N-terminus of proteins containing a peptidoglycan binding domain.	3.74772e-30
NZ_CP011280.1\|WP_084710347.1\|583446_586446_+\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	gnl\|CDD\|275131	TIGR04330, conserved_hypothetical_protein, CRISPR-associated protein Cpf1, subtype PREFRAN. This family is the long protein of a novel CRISPR subtype, PREFRAN, which is most common in Prevotella and Francisella, although widely distributed. The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the helicase Cas3 and endonuclease Cas3-HD.	6.91619e-163
NZ_CP011280.1\|WP_046328608.1\|595873_597556_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	9.39985e-122
NZ_CP011280.1\|WP_046328602.1\|589863_591261_+\|hypothetical-protein	gnl\|CDD\|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	0.00215965
NZ_CP011280.1\|WP_046328600.1\|587004_587997_+\|type-V-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|213942	TIGR04329, hypothetical_protein_SbacW_07302_partial, CRISPR-associated endonuclease Cas1, subtype PREFRAN. Members of this family are the Cas1 endonuclease of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	3.7271e-93
NZ_CP011280.1\|WP_052727676.1\|597687_597864_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	4.8131e-20
NZ_CP011280.1\|WP_046328598.1\|582297_583209_-\|DUF4116-domain-containing-protein	gnl\|CDD\|372614	pfam13475, DUF4116, Domain of unknown function (DUF4116).	1.1636e-10
NZ_CP011280.1\|WP_046328607.1\|594144_595884_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.88477e-153

>NZ_CP011280.1|WP_046328601.1|588001_588274_+|CRISPR-associated-endonuclease-Cas2
MVIISYDISNDKKRRVFSKFLGKFGHRIQYSVFEIDNAQSVLNNIILEINNKYKKMFDQSDSVYIFNLSKNCKIFRYGYAENDEKSILFV
>NZ_CP011280.1|WP_046328600.1|587004_587997_+|type-V-CRISPR-associated-endonuclease-Cas1
MISFPIFNSKKTIFVFSTEGDKISILNSNIVIKDKDLKVKVQCSCYNIFCIYIIGDTTLTTPLIKATKKFGFHIVLMTITFKIYSIISFGIEVNTQLKNKQYLYDKIDIGKMLIINKIENQISILKSFRKKSDEMKKDIKNMDKILMKLSELYIKNNEIELSKINIIMGYEGSVSKIYFKYLFEDLDFSKRMPRIKADYINSILDIGYTVLFNFIDSIVSIYGFDTYFGFLHRQFYMRKSLICDLIEPFRPLIDLQIKKSIHLKQFSKKDFKKIDNKYILKFECNKKYIKVFYKLLDQEKEYIFYFIQSFYRAFMREKSIEEYTKYIIRK
>NZ_CP011280.1|WP_052727674.1|586450_587008_+|type-V-CRISPR-associated-protein-Cas4
MENTIKISNLNDYIFCPISIYFHNLYGDMDTIMYQMDYQINGKFAHKTIDTNTYSTRKDVITSLDVYSEKYNLTGKIDIYDKSKMILIERKNKVSEIYDGYIFQLYAQYFCMIEMGYKVEKLQIYSISDNKKYDIKLPKDDVKMFSKFEEIVNNINLFEMEKYSPNNKSKCEKCIYSFSCDRSLL
>NZ_CP011280.1|WP_084710347.1|583446_586446_+|type-V-CRISPR-associated-protein-Cas12a/Cpf1
MNLLINEVNQKYKSKLNVFNSLYKQILTEEDTKSFVDEILLTPESVIKTIDNFIDSIIMNDIEGLKEEFLKISLENFEGIYISNKKLNEISNRKFGDYNSINMMIKQSMNEKGILSKKEINELIPDLENINKPKVKSFNLSFIFENLTKEHKELIIDYIRENICNVIENVKITIEKYRNIDNKIEFKNNAEKVSKIKEMLESINELCKLIKEFNTDEIEKNNEFYNILNKNFEIFESSYKVLNKVRNFVTKKEVIENKMKLNFSNYQLGNGWHKNKEKDCSIILFRKRNNERWIYYLGILKHGTKIKENDYLSSVDTGFYKMDYYAQNSLSKMIPKCSITVKNVKNAPEDESVILNDSKKFNEPLEITPEIRKLYGNNEHIKGDKFKKESLVKWIDFCKEFLLKYKSFEKAKKEILKLKESNLYENLEEFYSDAEEKAYFLEFINIDEDKIKKLVKEKNLYLFQIYNKDFSAYSTGNKNLHTMYFEELFTDENLKKPVFKLNGNTEVFYRIASSKPKIVHNKGEKLVNKTYLDDGIIKTIPDSVYEEISEKVKNNEDYSKLLEENNIKNLEIKVATHEIVKDKRYFENKFLFYLPITLNKKVSNKNTNKNINKNVIDEIKDCNEYNVIGIDRGERNLISLCIINQNGEIILQKEMNIIQSSDKYNVDYNEKLEIKSKERDNAKKNWSEIGKIKDLKSGYLSAVVHEIVKLAIEYNAVIILEDLNNGFKNSRKKVDKQIYQKFERALIEKLQFLIFKNYDKNEKGGLRNAFQLTPELKNITKVASQQGIIIYTNPAYTSKIDPTTGYANIIKKSNNNEESIVKAIDKISYDKEKDMFYFDINLSNSSFNLTVKNVLKKEWRIYTNGERIIYKDRKYITLNITQEMKDILSKCGIDYLNIDNLKQDILKNKLHKKVYYIFELANKMRNENKDVDYIISPVLNKDGKFFMTQEINELTPKDADLNGAYNIALKGKLMIDNLNKKEKFVFLSNEDWLNFIQGR
>NZ_CP011280.1|WP_046328598.1|582297_583209_-|DUF4116-domain-containing-protein
MTKKQVLKEIENDGLSLKYVSDKLRDDKEVVLRAVEIDGSNLEYVSERLRDDEEVILEAENYEDALKYASKRLRSNKDFMLKTLKVIDNVLEYASDELKDDKDFVLLAIENYNIISEASDRLKDDKDVVLLATKKNVWQLTYVSNRLKDNKDFALELVKTNGNALEYLNKKLQNDKDVVSKAIKHCGGALNYASKDLQDDEEIALKAVSENEFALRYVSERLYNNKEFVLKAIKSNPLVLRYANRQMKSDKDILLEAIKHDVLLMQYASSKLCDNEEFMLQAMKINDFALNYVSDRLKKVLNK
>NZ_CP011280.1|WP_046328597.1|581770_582280_-|hypothetical-protein
MKYTKEELKDLDYLKDEKDENYLRFVKQYIQNLKLGEMDLHDDFDFDCMFYIITTKGKEYKYFLTTEIKLLQDDLDEDTVQDIYKECEIDENYMYDLDKLSIKELEPLWYRSIDKSDCDLDMCDLGDKYIKIDDYTTYISSDRLEDLVDCYDIYKVYKDKINEEYIKAL
>NZ_CP011280.1|WP_046328596.1|581457_581649_-|hypothetical-protein
MKKGSKRTWDIWKNLSPDEKLSKSITIRVTANELKLIEDIRNNLGVKNREILLAGIKEMEKKI
>NZ_CP011280.1|WP_046328595.1|580839_581406_+|hypothetical-protein
MTPEATITIIENKGIAVVICGLVIFLAYKYFAGVLENSNETNKEILETLNKINNFLVNGYCRDEDLNLLIKLRGRYVILEYKWIIVKYVLNNHIKQNLEKIKLELKNYADSSSNRTLELLSKKASYQEIKKEVERINGILDEINEIIFPIFEDMAKQSLTFDEKLDIIRTIEIHFDKIESLFLSKLAI
>NZ_CP011280.1|WP_046328594.1|580168_580498_+|hypothetical-protein
MNKGTVFGIIFTVLGAIFGALLPKLRELVKKTPTELDDVALEVVVFVEKLLNGDSGESKNQRAKDLIEAKLGQTVKEKVLDKAVEKAVTTMKVAEAQKKSLDEVGKKGE
>NZ_CP011280.1|WP_052727673.1|579588_580164_+|N-acetylmuramidase
MDWIIEINGKKYKLVPLDNKKDPFDNIFNYILMVEGRYSNNPNDRGGATKYGITENVANAYYGYKVASLTKEQAKEIYYKEFYLKNKLDKVASDKVALSIFDWLVNSGVWAIKKAQLTLCNLGYKVDIDGIIGRDTLNSLNSVNVNDFLNEYHRIQKLFYEAIVYNNPSQKVFLQGWINRLNNKIKYIKEM
>NZ_CP011280.1|WP_046328602.1|589863_591261_+|hypothetical-protein
MWKDRFEKKILDRGYRYYLMRKVEFLEEKDEILKFIVIGTKEYEVVIDTYHRKTTCNCPYALGGKNCKHMVASIYEYNSKGKMISKYDLEESKWIVENILKICDSNESEVKLMEFLDDIEECIYNDFNNLAENILIFSFVELASYVKKYNINSLMLITDKIMRLLKMSLKYRKHNLQVKILNKLYNKIQNIYSKNPIVFLFYIYLEKTFTNCRKEVIDILLKNINIEEDLFLEMLFEIYSKYKYDEKLSELANRYDNKEMSYKYIIEMEKRKENYVKVIEYCEKAIKTFEDNSYFIEYIIKITRNIDKYFDKYYNNVLLNFDNTRKILYEDYEIICQKISKDKLSVFKKNILEYHLKTEAYVRILYHEKMYEKILKQKLSDVFEFEYIYNYMIENYEDKLYSKICAEIIELVKKSKFMSDYENIANTMEYLNNFKDGYEKRSQLEKSLFEKYPKKAKLKKVLSYI
>NZ_CP011280.1|WP_046329268.1|592389_592599_+|hypothetical-protein
MTKKEIIETYNKPINYIEYDKKTNTNKNVRYYDLVRVITNEENTEVLTVVKDDKDRSQGMIRRGRWKKK
>NZ_CP011280.1|WP_046328603.1|592595_592847_+|hypothetical-protein
MKFIDYINKIKKHLSNPNKTCDEYFKFYMEIDSNYPSKNLSYDEEYFVDDIREVTEYTEYWNKTKHFKKLDEELKKVLAKYGY
>NZ_CP011280.1|WP_046328604.1|592908_593103_+|hypothetical-protein
MISREEMIKADGKYVNIDYKNGEKLKNVYVIEYLDAESEEEENSLELDKILVLQSEIEKIEILD
>NZ_CP011280.1|WP_046329269.1|593148_593352_+|hypothetical-protein
MELKFEDIYELEKLRNGYIKDEYHTISKLYFNRMILFMYLCKAYKNKAWKSKFHDDNSMFVVGITTP
>NZ_CP011280.1|WP_046328606.1|593908_594109_-|hypothetical-protein
MKNMKMKFFVDILKKNVDTFGEHLFTFDKKKIYNLFADYPQNMSKEEVEIFSKENPYWREFFRFGK
>NZ_CP011280.1|WP_046328607.1|594144_595884_-|ABC-transporter-ATP-binding-protein
MKNSKALKRMIHMVFKKSPLKFFTIIISILIFKICSTYSTKLIQVIIDKVLIPKRLDLLPKYIAILGLIYLISVCFEELNIILAVPLSQDVMYGIRKKAFEKLQNLPIVFFDTHEHGDIMSKFTNDIDSMNTFLEFSMFNIFSGIVEMIALLAIMIYISYKLAIVVIFFSALSYLIIYLFSKYSIKSYDTNQKNIGSINGYIEESVNGQNIVKLFNYEKRNNSIFKRLNNAWLKSIVSANIYSNTIFPVIGAINFLQYACIAIVGTVFHTSIGTIGSFLLLSRLIAMPLFIFSFEVGMVNSALAGAKRVFELMDLDNEIDEGKVYLKDGYWILENNEKVKCVGNIEFINVDFSYNKDKKILKNINMYAKYGQKIAIVGPTGSGKTTITNLINRFYEIDSGTITFDGIDIRRINKSDLRKNITVVLQDSILFSGTILDNIRYSDETISKEEVIEVAKQIGAHHFISQLEKGYDTYISGNTDTLSQGQKQLLCLVRAKLRNTPVLILDEATSNIDTRTEKIVQDGMDKLMHGKTVFVIAHRLSTIIDSDVIMVLENGEIIERGTHTQLLAKNNVYANLYNG
>NZ_CP011280.1|WP_046328608.1|595873_597556_-|ABC-transporter-ATP-binding-protein
MLKLIARYTKQYKFFAILAPIFVTLESFLEMLIPLYMSKLVDNGLNKPIIIKLLICTLLSLILGISSSISAIKASCGFASNLRFELFQKIQKLPSYTIDELGTHSIITRLTKDIQKAKNTYQSLIRYTLRCPIMALLSFIMIFKISKKISIIFFIMVPLLIVLILLAIKLLLNQLYILFKLSDDLNQNIDENLKGIKVIKTYNTEKKEIKKFNTISKKITKTLQFLDTTLSSFYPLLTLLGYGCNILMIIIASKMIINKEITIGLFLSILTYSGQILGNLFECGYIISDFAMSKISIVRIFEILEKENEVDSGNITSLDNFDIEFKNVNFDYPTTHDVLKNVSFKLKQGESLGIIGATGSGKTSLVNLLVRLYNTTSGSITIGNKNILDINLNYLRDIVSIVSQNNTLFKGNIYSNMKLANSDLDDEKILEAIKGVRAQNFISSLDQTVEQYGSNFSGGQKQRLYIARSLLKYSPILILDDSTSAIDTKTDRDIKNFLKGKNCTKIIISQKISSVLTCDKVMVLDNGMIQNIDTNENLLHNNEIYKEFYNIQKGGNFDEE
>NZ_CP011280.1|WP_052727676.1|597687_597864_+|PspC-domain-containing-protein
MRKRLTRSRKNRMIFGVCGGIAEYLDIDPVIVRLIFLFFGVTLFLYVVMAVIIPEEDY
>NZ_CP011280.1|WP_046328609.1|597895_598858_-|hypothetical-protein
MELNLLNQYLLVSTFEKLRHCKNFENFDVQVKKAYLNQKIKDVSLGFYSYSDAFIAVINEANDEKKRELIEKILATTDEYILKDMKTHPSIAEYIMIFFNYLYFDLYFGTEKLTNPKKIKSFIRNEKTQEFKDFKTNIIRSLGEDSDVSIKINKIYDIVTNLNYKDIIEFKNQVDEISHKINCLFGLLMDLDAIPFLFIFKCVYLPYKALIYRTTGDKESKESQDFNFLSQKTKLSLTTYSNLYNTLKNIKIKETDFSYLHLNYKTTIDNIADLSLLMCDVVINASDAKLTNEEKQVIYLFYKDVELLIWEYIALIEYLI

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Crispr_ID: NZ_CP011280_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011280_4

1173037-1173127

Orphan

Consensus_repeat	Method
TTCGAGGGACATTTCGAGGGACAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011280_4

>merge|NZ_CP011280|4|1173037-1173127|CRISPRCasFinder
TTCGAGGGACATTTCGAGGGACATTTCGAGGGACATCTAAAATTCATATTTGTAACAAAGCTAATATATAAAGGGTTTTTTCGAGGGACTT

>NZ_CP011280|4|4|1173037-1173127|CRISPRCasFinder
TTCGAGGGACATTTCGAGGGACAT	TTCGAGGGACATCTAAAATTCATATTTGTAACAAAGCTAATAT
ATAAAGGGTTTTTTCGAGGGACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011280.1\|WP_052727718.1\|1174625_1175594_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|237942
NZ_CP011280.1\|WP_046329075.1\|1160728_1161838_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236413
NZ_CP011280.1\|WP_046329079.1\|1164405_1168377_-\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NZ_CP011280.1\|WP_046329078.1\|1163801_1164365_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP011280.1\|WP_046329326.1\|1178894_1179335_-\|nucleoside-2-deoxyribosyltransferase	unknown	unknown	gnl\|CDD\|377443
NZ_CP011280.1\|WP_046329082.1\|1172369_1172855_-\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NZ_CP011280.1\|WP_046329087.1\|1179336_1180563_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP011280.1\|WP_046329090.1\|1182565_1185070_-\|DegV-family-EDD-domain-containing-protein	unknown	unknown	gnl\|CDD\|274671
NZ_CP011280.1\|WP_046329083.1\|1173207_1174605_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|225420
NZ_CP011280.1\|WP_046329086.1\|1178064_1178868_+\|5'-nucleotidase,-lipoprotein-e(P4)-family	unknown	unknown	gnl\|CDD\|273674
NZ_CP011280.1\|WP_046329085.1\|1176923_1177997_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP011280.1\|WP_046329076.1\|1161809_1163576_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP011280.1\|WP_046329089.1\|1181711_1182566_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP011280.1\|WP_046329081.1\|1171968_1172337_-\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NZ_CP011280.1\|WP_046329077.1\|1163632_1163815_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|376482
NZ_CP011280.1\|WP_046329084.1\|1175593_1176811_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP011280.1\|WP_144406239.1\|1160359_1160728_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP011280.1\|WP_046329073.1\|1158163_1160140_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240612
NZ_CP011280.1\|WP_046329080.1\|1168391_1171829_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_CP011280.1\|WP_046329088.1\|1180636_1181647_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675

Protein	Function_ID	Function_description	E-value
NZ_CP011280.1\|WP_052727718.1\|1174625_1175594_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	4.2568e-151
NZ_CP011280.1\|WP_046329075.1\|1160728_1161838_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	3.14925e-152
NZ_CP011280.1\|WP_046329079.1\|1164405_1168377_-\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NZ_CP011280.1\|WP_046329078.1\|1163801_1164365_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	2.29109e-93
NZ_CP011280.1\|WP_046329326.1\|1178894_1179335_-\|nucleoside-2-deoxyribosyltransferase	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	2.16288e-14
NZ_CP011280.1\|WP_046329082.1\|1172369_1172855_-\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	8.69798e-50
NZ_CP011280.1\|WP_046329087.1\|1179336_1180563_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP011280.1\|WP_046329090.1\|1182565_1185070_-\|DegV-family-EDD-domain-containing-protein	gnl\|CDD\|274671	TIGR03599, YloV, DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.	6.00325e-143
NZ_CP011280.1\|WP_046329083.1\|1173207_1174605_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.13144e-113
NZ_CP011280.1\|WP_046329086.1\|1178064_1178868_+\|5'-nucleotidase,-lipoprotein-e(P4)-family	gnl\|CDD\|273674	TIGR01533, Lipoprotein_E, 5'-nucleotidase, lipoprotein e(P4) family. This model represents a set of bacterial lipoproteins belonging to a larger acid phosphatase family (pfam03767), which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.7171e-78
NZ_CP011280.1\|WP_046329085.1\|1176923_1177997_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	9.8116e-162
NZ_CP011280.1\|WP_046329076.1\|1161809_1163576_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	5.52475e-132
NZ_CP011280.1\|WP_046329089.1\|1181711_1182566_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.23128e-84
NZ_CP011280.1\|WP_046329081.1\|1171968_1172337_-\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	1.75113e-44
NZ_CP011280.1\|WP_046329077.1\|1163632_1163815_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|376482	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly.	0.00111852
NZ_CP011280.1\|WP_046329084.1\|1175593_1176811_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP011280.1\|WP_144406239.1\|1160359_1160728_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.08282e-49
NZ_CP011280.1\|WP_046329073.1\|1158163_1160140_-\|hypothetical-protein	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	1.07122e-22
NZ_CP011280.1\|WP_046329080.1\|1168391_1171829_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP011280.1\|WP_046329088.1\|1180636_1181647_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	1.37638e-179

>NZ_CP011280.1|WP_046329082.1|1172369_1172855_-|50S-ribosomal-protein-L10
MPAQYKVDEVKKLVSKLKDAKAVVFVDYKGISVNEDTELRRIARNSNVEYFVAKNRLIQIALKEVGMDADYGTLLEGTTSFVVGYEDGVAPSKTVYEYSKKINKLEIKGGYVDGGLVDKAMIEALAKLPTREELLAQVAYGLLSPVRMLAVALTNVAEQKN
>NZ_CP011280.1|WP_046329081.1|1171968_1172337_-|50S-ribosomal-protein-L7/L12
MAFNKEQFIEDLKAMSVLELKEVVEAIEETFGVSAQPVAVAAAGAAGAAAEEKTEFDVILQSAGASKINVIKEVRGITGLGLKEAKELAETAGSKIKEGVSKEEAEEIKAKLEAAGATVEVK
>NZ_CP011280.1|WP_046329080.1|1168391_1171829_-|DNA-directed-RNA-polymerase-subunit-beta
MSKLIERYSFGKIKERGQMPGFLDFQMDSYEDFLQAKVKPEDREVKGLEAIFREIFGEISHGDIQLRYSSYEIRDNEEPLNDELECKRRGKTFSGLLKVKFNLTNKDGEIPSEFVHFGEIPLMTEQGSFIINGAERVVVSQLHRAPGITFNKEVDMQTGKDLFVGKIIPYKGTWLEFEVDKKDILNVKIDRRKKVPATVFLKAIGFFHDNNEILDEFLEKKTIDLSEWYDYTTDETLSAIKSRIEGSFSREDKIDGNTGEFIVEIGQRITEGIIQSLIEAKESSIDIWEVKPEEIPLANSIQIDDTVDSDEAVIEIYRKLRPGDLVTLTSAKQLIIPMFTNVQRYDLANVGRYKINKRLKLSLPDTDVVLKKEDVVATINYLKKLIRGEGTTDDIDNLSNRRVRGVGELLAIQVKGGMIKLAKMAKEKMTTIQDIKALSVQSLLNTKPLNALILEFFGSGQLSQFMDQSNPLSELTHKRRISALGPGGLSRDRAGFEVRDVHNSHYGRICPIETPEGPNIGLIASLSTYGKVNKYGFIETPYVKVENGVADFNKIEYLAADEEVGLFIAQADTPVDDKGNLLTNPVCRYDDEIVTIDKHKVDLMDVSPQQLVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPLVGTGLERKVAIDSGAVICSKTSGVVTAVDAKKIIVTDNEGKEHLYRLLNFEKSNQSMCLHQKPIVDIDEKVEKGQILADGPATCGGDLALGRNLLIAFIPWEGYNYEDAILISERLRKDDVLTSLHIEEFDIESRTTKLGDEEITREIPNVSEEAIRDLDENGIIRVGAYVKPDDILVGKVTPKGETEPPAEEKLLRAIFGDKAKDVRDTSLRLPHGVKGTVVEVLELSKENGDDLKAGVNKLIRIYVAEKRKITVGDKISGRHGNKGIVSRILPVEDMPHLEDGTPVDICLNPLGVPSRMNIGQVLEVHLGMALGKLKKHIATPVFDGATEEEVKEMLEKAGFNKTGKVKLIDGRTGKPFDSEITVGYMYILKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASNVLQEMLTVKSDDINGRTKTYEAIVKGQPMPEADAPESFKVLMKEFQSLGLDINLYSADGEKIELDNNVDM
>NZ_CP011280.1|WP_046329079.1|1164405_1168377_-|DNA-directed-RNA-polymerase-subunit-beta'
MSIKDFDSIQIKLASPEKIREWSYGEVTKAETINYRTLKPEPNGLFCEKIFGPSKDYECSCGKYKRLKHKGIKCEKCGVDVTTSKVRRERMGHIELASPVAHIWYSKGTPNKMSLLLGISTKDLEAVLYHSKYIVIEGDDEYPAGSVIQSREYELIKTQNRENFVAKMGAEGVQDLLKKIDLDEAEAKLDEELETVNSVQKKKKIVKRLKVIRDFKNSGNRPEWMILTVLPVMPADLRPMVQLDGGRFATSDLNDLYRRVINRNARLKKLLEINAPETMIKNEKRMLQEAVDCLIDNGRRGKAILSQNNRELKSLSSMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMNQCGLPKKMALELYKPFLMRELVKRELASNIKIAKRMVEEEDECVWELIEEIIKNHPVLLNRAPTLHRLSIQAFEPILIEGKAMRLHPLVCAAFNADFDGDQMAIHLVLSPESQMEAKLLMLSTSNLLSPSSGKPIAVPSQDMVMGCYYMTTTKKGAKGEGLMFSNKNQLITAYQTGNIDTHAVAKVRIDGKLVETTPGRVMFTTMLPPEVRDYGATYGKKQIAKLIAVLYKKYGAQKTSELLDKIKAFGYHYGTLAGVTVSVEDLEIPATKKGLLEKADKQVLEVDEEYRQGKIINDERYRRTVEIWSDVTEQVTKDMMDNLDEFNPVYMMATSGARGSIAQMRQLAGMRGLMADTQGRIMEKPIKVNFREGLSVLDFFMSSHGARKGASDRALRTADSGYLTRRLVDISHEVIIKKDDCGCHGEGLLVSSLVDSGEVIEPLAERIYGRRLAQDLVHDGVVVAKYNTMVTDELNEKIKELGITEVMVRSPLTCKLENKGVCRKCYGIDLSNHKEILKGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAQAAAVQSSYKAIDGGKIKYVDLELITDENGREIVATQTAKAIVGKHKYEIPSGSTLMFKNGEKVKKGEVIVEFDPFQTPIISTKAGRISYRDIYIKENVDIKYNVIEKLAIKPSENNEINPRAIIYDEKTNKKLAEYSIPYGAYIMHSEKEHVNSGEIIAKIVKTAEGTKDITGGLPRVQELFEARNPKGKALLSDVAGRVILKEDMNNKKGARTVIITDPETGEEIKQYVIQGGERLVVTNEMLIEKGAKITDGPISPHDMLRVKGEVAAQQFILEAVQGVYRGQGVTVNDKHIEIIVKQMFQKVRILESGSTLFLEEELVDKKLIENINRKKIEEGKQPAKYEPIIQGITKAAVNTESFISASSFQETTKVLANAAIEGKVDRLEGLKENVIIGKKIPGGTGFKDYNDLKVEELEEISEDEI
>NZ_CP011280.1|WP_046329078.1|1163801_1164365_-|guanylate-kinase
MKGRLFVVSGPSGSGKSTITKKVRDMLNIPLSISATSRKPRLGEVDGRDYYFLTKEEFEEKIKNNEFFEYALVHGNYYGTLEKVVEDSLNKGHNIILEIDVQGGIQAKKRKQDAVLIFCRTENEEVLEKRLRNRKTDSEEIIELRLKNAKKELSYEKEYDYVIVNKKLDDAIKQLIDIIKEESYEKA
>NZ_CP011280.1|WP_046329077.1|1163632_1163815_-|DNA-directed-RNA-polymerase-subunit-omega
MKKHKITVDELVNKFPNKYELAIACGKLARIKLQNGVAKSKVMDIVFEEVMEDKIKIEEN
>NZ_CP011280.1|WP_046329076.1|1161809_1163576_-|DNA-primase
MLKESDKQLLLSKIDIVELISEYVDLKKSGAGFKGLSPFKSENTPSFMVSPSKKIFKDFSSNIGGDAIKFYMLINNLTYLEAVDELARKYNVNINITSEKRYNVKYYNLLSEISKIYQENLLASKEALEYLKNRGYSLNDIKEYRLGYALDKWDSIYTKYENDDAVKDLLELGIVSHSENRYYDTFKNRIMIPILNVKGDIIGFGGRDISSNPNVAKYLNSKESKIFKKSFELFGVFDGGKKIKEYNSCILVEGYFDVLALHKNNIKNVVASLGTALTEKQAEYIRKFTNNIVIAYDNDSAGLEAKKRAIHILNKFEFNIKVMDYSNLGKDPDEILHKYGKNDFVDILSKSKDAFDFLFEYYLKEKDISKLGTKMQVIGDMKPYFSSLKNMIYYDEFVDRFSKRLNISKEALKSNLGKIAVSNNLVSTKKPKESNLKISKKARLEELTILYLLYDKTKYSLFNTFSFENIYYESIIDKGFDGSKFSEEEKEIVFHLKTKYTDISKIDYILLYKEWVLDYIKNSREMILDYYNGYENMNDEDYAKYMSFVSQVKEIEKSVDLPKIKEVYINYMEYEKGKLHATKGEENK
>NZ_CP011280.1|WP_046329075.1|1160728_1161838_-|RNA-polymerase-sigma-factor-RpoD
MLQKEKKTNSLKEDISKILKEARDKKEISKNMIENLLENRISNEKIVQIVEKLRNEGITIIEDVDSEVPYEKLDDAEVQKMLNDDIMKIAEYMDVDEPIKMYLREIGQIPLLTHEEEISLAQKVVEGDMQAKQKLIESNLRLVVSIAKKHTNRGLKLLDLIQEGNMGLMKAVEKFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGREPTPDELSKKLGIPMDKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFLNPYDATSRVLLREKLESILKEALNEREEQVLRHRFGLDDGAPKTLEEVGKIFNVTRERIRQIEVKAINKLKSKKYTSNLENYRK
>NZ_CP011280.1|WP_144406239.1|1160359_1160728_-|RidA-family-protein
MKIMSNLIPKAVGPYSAYRVVDDYVYISGQIGLDPETNELELDLSSQTKRILENIKNILAKENLTMDNVIKTTVLLSDIHDFVPVNEIYMTYFNEPYPARSAFAVKDLPKGALVEIEVIAHR
>NZ_CP011280.1|WP_046329073.1|1158163_1160140_-|hypothetical-protein
MKKSILICAALTMLASVGYSDKNDGNVTIDGASNIILKPSIDNKINGYDNVIGGRNNEVNDEFLDIAIANKDKSEAEIKKEISKELGKKYKKVLDIVKANENKKYNKNDKTPDGKKPEKNEIKETDAEILKSIERTLGPNEAAKYDFEIINNIIKNVKERKLTEDDDILYKAFDSDGYYNRDVIKKVISKKNKKDEEIKKDIATSSLYRYSDYNTILGESNKAEKSENSVVMGYLAEVENSNSHGNVAIGFYARAKGRSATAVGPRAVAVNKLAVALGYNARSYGENSTSIGANAMSYGNWSTALGSNSKVIAEEGTALGYGAEVFGEHSVALGSSSKAGEASEKDGYRPYSAIDGKYKGITQEKIREIALKEGREKAKEAFNAMFKDRVWKANLGVVSIGDPRYGTRQITNVAAGYYDTDAVNVAQLKELKTYVDNSTPFEYATTKGESLYKYGKKYYYKKNNKEYEGKVDEVIIKAKEPHKLSNIKSSLGDGNTTSSDTTPASSTSENGDSVVVINDLKTIKENKADKAYVDEKVAKLNEKTDLALSGVSSAVAMANLPQVSGDRKFNLAASYGYYGGSHSVAVGLSGTNDKQNFTYKLSGAVNSKGNLAFGIGAGVMLGSVNNKDKVIEQLKDENKEMRKEINELKEVVRKLIHK
>NZ_CP011280.1|WP_046329083.1|1173207_1174605_-|ATP-dependent-DNA-helicase-RecG
MTVDEVKKLIQDGEKIDVEFKESKDTITKDVFDTVCSFNNRNGGHILLGVNDKREIVGVNKDRVDKVIKEFTTSINNPQKIYPPLYLLPEVFEIDNKKIIHIRVPEGYRVCRHNGRIWDRSYEGDVNVTDNSELVYKLYARKQGSYFVNKVYPNLDISFLDSSVIAKAKKMAISRNQNHVWKEMSDEELLRSANLILTDPETKREGITLAAILLFGKDNSIMSVLPQHKTDAIFRVVNKDRYDDRDVVITNLIDSYERLIAFGQKHLNDLFVLDGIVNVNARDRILREIVSNTLAHRDYSSGYPAKMIIDDEKITVENSNLAHGFGALDLRKFEPFPKNPTISKVFREIGLADELGSGMRNTYKYTQLYSGRKPLFEEGDIFRTIIPLSKIATQKVGYQYSESQNEFEKIENNIKNIIKENNKVSRKEMAKLLNVGEKTVTRYIKEIKNIKYVGVGKNGHWEINE
>NZ_CP011280.1|WP_052727718.1|1174625_1175594_-|FAD-dependent-oxidoreductase
MFDLSLNLNEKDFSEMRSDSVYDVIVIGAGPSAISAAIYSIRKGLKVGIIADAIGGQVSTTNGIENIIGTISTTGPEFVNSLEKHAKEYEIPFYKGHLVNKIENGKIKTVVTDNGVEFKTKTVIISTGAKHRELNVKGESEFKGRGVHYCSTCDGPFYRNLDVVVAGGGNSGIEAAIDLSNIAKSVTVVEFMPELKADEVLQEKAKENEKIKILTNTAIKEIRGEQFVTNILVTDRKTNEDRELKVDGVFVEIGLKANTDNFKDLVKTNKIGEIEIDSVNRTDVDGIFAAGDCTDVAYKQIIIALGEGAKAALSAFNYIINH
>NZ_CP011280.1|WP_046329084.1|1175593_1176811_-|tyrosine--tRNA-ligase
MTEVEIQKEVERQFNILKRGCEELINEEEFKKKLEKSIRTGKGLKVKLGIDPTGSDLHLGHAVPLRKLKQFQDLGHEPIFLIGTFTARIGDPTGKSETRKMLTMEQIEKNIETYLSQIGNILDIHKMTVMYNHEWLESLSLSDFLSLMSKFTVSQMISREDFAKRLKENKPVSLVEFMYPILQSYDSVHLEADVELGATEQKFNILKGRDLLRDFGKEPQVCMLMPILVGLDGVEKMSKSLNNYIGITDTPNDMFGKIMSISDDLMYVYYEQLTEVPLEEIERIKKEVHPMEAKKRLGEELVKIYYSSEEAKKAREYFENLFSKKNLDIELPTKEVSASSMGIIDLLVKELDFCKSTSEARRLIEQGAVKVNDDVVKDNKAVIEISHGMIIKAGKKKIVRIKKED
>NZ_CP011280.1|WP_046329085.1|1176923_1177997_+|glycerate-kinase
MKILIAPDSFKNCLSSQKICEIFRKNCINDVITCPMADGGEGTVNTLVNATNGRYITKRVHGPNYNKVYATYGILGDKKTAVIEVASCAGIALVKKRNPFYTTTYGLGELILDALDKGIRDFIIGLGGSSTNDAGIGMLRALGIKMYSTDKTEIIHAKDICKICEIDRTHFDKRIKESNFLIASDVTNPFTGINGASFVFGPQKGATKSMAKKLDDNFKHFEKILGRNLEFKGAGAAGGLGACFVVFFNANLEKGIDIVNRICKLEEKIQDADIVITGEGRSDSQTKFGKTPYGILCLAKKYNKPVYLFSGRIIDSEELLDLGFDKLVEISPKDVTMSYAIRNTKRFLIETIKRIGI
>NZ_CP011280.1|WP_046329086.1|1178064_1178868_+|5'-nucleotidase,-lipoprotein-e(P4)-family
MKLSKKVFALLATTITIASFAADKTYTLTANQLMARENTMSTYWYQTSVEAKALYLQGYKLATKNLAQIIKKHHKKPIAIVLDIDETVLDNSQYQAQNIKDGTEFDSKTWDEWVQLGKAKAVPGAKEFLRFANKNKVKIFFISDRAGNQVDITKKNLENEGIPVQSTKSLLFKNLGSKVERMNNVKKHYDIVMLFGDNICDFGDFSTTSMADREKKLEEVKAEFGDKFIIFPNPMYGTFERTIYKEKKAKTTEEKMEVKHNLLKGYK
>NZ_CP011280.1|WP_046329326.1|1178894_1179335_-|nucleoside-2-deoxyribosyltransferase
MKVYLAGALFNEAEVEQRKKEGRILRKNFPNLDIFNPIDQPFNENKQSLPTPEEIYTNDANAVKNCDIAIFDLTNEDAGVMVELGLAIAYGKIIIGINSDIRLKSSNKYDIPTYGMNHFVLGGILKYGKLVYSFNEVVEELKKIVK
>NZ_CP011280.1|WP_046329087.1|1179336_1180563_-|phosphoglycerate-kinase
MKKKTVEDLQVLGKKVLVRVDFNVPIKEGVIKDDNRIKAALPTLKYLLSKGAKVIAFSHLGRIKEEADKKSKTLLPVSKRLAELLGQEVKFVPQTRGKELEDAISNLKNGEILMFENTRFEDLDGKAESKNNPELGKYWASLGDMFVNDAFGTAHRAHASNVGISENLKGNTAVGYLMEKEIKFLGGAVDNPKKPYVAILGGAKVSDKIAVIENLIEKADKILIGGGMMFTFLKAKGLNTGKSLLEEDKLDLAKEILAKAEAKGVKLVLPIDTVVAKEFNNDAPHKTVSVEDIASDDMGLDIGEKTVELFKKELEGAKTVVWNGPMGVFEMSNYAKGTIGVCEAIANLKDAITIIGGGDSAAAAIQLGYSDKFSHISTGGGASLEYLEGKVLPGLAAIDNKSCGCSCE
>NZ_CP011280.1|WP_046329088.1|1180636_1181647_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MSVKVAINGFGRIGRLALRLMINDPEFDVVAVNDLTDPAMLAHLFKYDSSQGKFNGEIKVEEGAFVVNGKTIKSFSNANPEELPWGELGVDVVLECTGFFVKKEKAEAHIKAGAKKVVISAPAKGDGVKTVVYNVNHEILDGSETVISGASCTTNCLAPMANVLEKVFGIECGSMTTIHAYTGDQNTLDAPHRKGDFRRARAAAVNIVPNTTGAAKAIKLVIPSLAGKLDGAAQRVPVPTGSLTELVTVLKKKVTVEEVNEAMKKAATESFGYNEEPIVSSDIVGSHFGSIFDATQTKVIEAGDHQLVKTVAWYDNEMSYTAQLIRTLKYFVELSK
>NZ_CP011280.1|WP_046329089.1|1181711_1182566_-|RluA-family-pseudouridine-synthase
MKSFRLDRSTHRMKISEYLREIQNYSSRSLRRVLVYLDNKQVRLTKKLPSSGTLKVVEKEKETNIKPIQMELDIVYEDQDLLIINKPYGLVTHPTLKKVDVTLANGVVYYLNTVPRFYNRLDMDTTGLIIVAKNSYTQSFLQNYGNVRKKYLAIVEGKLEKETIIEKNIYRPENEIKRIIDEKGQYAKTKVRPIEYNEKRDISLVECELFTGRTHQIRVHLSHIGHPILGDKLYSDKENNDVKRQMLHSYSLEFIHPRTKEKMDITIEAYDDMKKILKKYSKND
>NZ_CP011280.1|WP_046329090.1|1182565_1185070_-|DegV-family-EDD-domain-containing-protein
MGIKYMDAKRLRRVLIGGAKWIKRHEKYLNELNVYPVPDGDTGTNMSMTVQNMIDEIMENTTDKTDMKTLSDVVEDAVLIGARGNSGTILSQIITGFLSSVRDKKRLSPSDVADALIAAKELAYKVVDTPVEGTMLTVIRMVSEKANEVRNVETFNEFIDAIVEIANEAVELTPELLPKLKEAGVVDSGGKGLFYFFVGMCKILTELELLTKASVVESDYDKTILNINHNQEEIKYKFCTEFIIQIKEDFDREQLKSELLELGDSAVFAASSKRFKVHIHTNTPLIVIDKAIQNGELEKVKIENMKVQNENVLKDEKGLAKIFVNKKKFLRKDAYVILADTLALKDKFLELGADVVILGGQGQNPSVNDIVNAVSKVEGYSNVYVLPNNKNVIAAANLAMEKISTPLIVIPTKTMLEGMFYLKYPKITIEEKDKLNSINSSIEITRAVRETVVDGMEIKVDDYLVLVNTKIMFVTKTLEEAIDKIISNLVTEYTLNITVVEGNTIYQNIRDKFNKLNSKLVENVKFIEGKQENYDYYIYIDNKPKNQPDVAIITDSASELSPHEVIGKGITILSTRMDCDGVEYRDEENITKQEFWDILVNQDKQFRTAQPSPKDIVNTYTEIFNRGYKKILVIPLSSKLSGTQNVLKLAREMIKKEDSIVIYDSKAISVQLGYMVQEAAKLIGNGRSIDYTINYLDKLRDNMKLYIVVDSLKYLYLGGRISKAAQTIGDLLNMKPILSIANGSLYVEKKVLGGENSITRYLEKAINERIRKHSIYLLSGAGGTSSQVEQASKLTSIFKQNRKVTVISPMKEIGATVGTHAGPVYGILIIPKLL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011280_3	3.4\|588653\|26\|NZ_CP011280\|CRISPRCasFinder	588653-588678	26	MK798156	Enterococcus hirae strain fas4 plasmid pfas4-2, complete sequence	78407-78432	3	0.885
NZ_CP011280_3	3.17\|588653\|27\|NZ_CP011280\|CRT	588653-588679	27	MK798156	Enterococcus hirae strain fas4 plasmid pfas4-2, complete sequence	78406-78432	3	0.889
NZ_CP011280_3	3.2\|588528\|26\|NZ_CP011280\|CRISPRCasFinder	588528-588553	26	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	791392-791417	4	0.846
NZ_CP011280_3	3.2\|588528\|26\|NZ_CP011280\|CRISPRCasFinder	588528-588553	26	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	1533-1558	4	0.846
NZ_CP011280_3	3.2\|588528\|26\|NZ_CP011280\|CRISPRCasFinder	588528-588553	26	NZ_CP051549	Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1	72277-72302	4	0.846
NZ_CP011280_3	3.15\|588528\|27\|NZ_CP011280\|CRT	588528-588554	27	NZ_CP051549	Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1	72276-72302	4	0.852
NZ_CP011280_3	3.1\|588465\|26\|NZ_CP011280\|CRISPRCasFinder	588465-588490	26	MN693182	Marine virus AFVG_25M24, complete genome	40993-41018	5	0.808
NZ_CP011280_3	3.2\|588528\|26\|NZ_CP011280\|CRISPRCasFinder	588528-588553	26	CP053591	Aquimarina sp. TRL1 plasmid unnamed, complete sequence	2251-2276	5	0.808
NZ_CP011280_3	3.2\|588528\|26\|NZ_CP011280\|CRISPRCasFinder	588528-588553	26	NZ_CP024775	Bacillus thuringiensis LM1212 plasmid pLM4, complete sequence	29949-29974	5	0.808
NZ_CP011280_3	3.2\|588528\|26\|NZ_CP011280\|CRISPRCasFinder	588528-588553	26	NZ_CP051683	Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence	13322-13347	5	0.808
NZ_CP011280_3	3.2\|588528\|26\|NZ_CP011280\|CRISPRCasFinder	588528-588553	26	NZ_CP041077	Bacillus tropicus strain LM1212-W3 plasmid p4, complete sequence	17326-17351	5	0.808
NZ_CP011280_3	3.4\|588653\|26\|NZ_CP011280\|CRISPRCasFinder	588653-588678	26	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	42088-42113	5	0.808
NZ_CP011280_3	3.4\|588653\|26\|NZ_CP011280\|CRISPRCasFinder	588653-588678	26	MT708547	Klebsiella phage Muenster, complete genome	164196-164221	5	0.808
NZ_CP011280_3	3.4\|588653\|26\|NZ_CP011280\|CRISPRCasFinder	588653-588678	26	AB897757	Klebsiella phage K64-1 DNA, complete genome	42096-42121	5	0.808
NZ_CP011280_3	3.10\|589028\|26\|NZ_CP011280\|CRISPRCasFinder	589028-589053	26	KJ018209	Shewanella sp. phage 1/4, complete genome	98497-98522	5	0.808
NZ_CP011280_3	3.10\|589028\|26\|NZ_CP011280\|CRISPRCasFinder	589028-589053	26	NZ_CP053689	Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence	103577-103602	5	0.808
NZ_CP011280_3	3.10\|589028\|26\|NZ_CP011280\|CRISPRCasFinder	589028-589053	26	MN693379	Marine virus AFVG_25M207, complete genome	22390-22415	5	0.808
NZ_CP011280_3	3.13\|589216\|26\|NZ_CP011280\|CRISPRCasFinder	589216-589241	26	MT457553	Shewanella phage Thanatos-2, complete genome	17762-17787	5	0.808
NZ_CP011280_3	3.13\|589216\|26\|NZ_CP011280\|CRISPRCasFinder	589216-589241	26	MT457552	Shewanella phage Thanatos-1, complete genome	14393-14418	5	0.808
NZ_CP011280_3	3.15\|588528\|27\|NZ_CP011280\|CRT	588528-588554	27	NZ_CP051683	Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence	13321-13347	5	0.815
NZ_CP011280_3	3.15\|588528\|27\|NZ_CP011280\|CRT	588528-588554	27	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	791391-791417	5	0.815
NZ_CP011280_3	3.15\|588528\|27\|NZ_CP011280\|CRT	588528-588554	27	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	1533-1559	5	0.815
NZ_CP011280_3	3.15\|588528\|27\|NZ_CP011280\|CRT	588528-588554	27	CP053591	Aquimarina sp. TRL1 plasmid unnamed, complete sequence	2250-2276	5	0.815
NZ_CP011280_3	3.23\|589028\|27\|NZ_CP011280\|CRT,PILER-CR	589028-589054	27	MN693379	Marine virus AFVG_25M207, complete genome	22389-22415	5	0.815
NZ_CP011280_3	3.26\|589216\|27\|NZ_CP011280\|CRT,PILER-CR	589216-589242	27	MT457553	Shewanella phage Thanatos-2, complete genome	17762-17788	5	0.815
NZ_CP011280_3	3.26\|589216\|27\|NZ_CP011280\|CRT,PILER-CR	589216-589242	27	MT457552	Shewanella phage Thanatos-1, complete genome	14393-14419	5	0.815
NZ_CP011280_1	1.1\|6308\|28\|NZ_CP011280\|CRISPRCasFinder	6308-6335	28	NZ_CP017185	Enterobacter roggenkampii strain DSM 16690 plasmid pDSMZ16690, complete sequence	30173-30200	6	0.786
NZ_CP011280_3	3.2\|588528\|26\|NZ_CP011280\|CRISPRCasFinder	588528-588553	26	NZ_CP026119	Halobacillus litoralis strain ERB 031 plasmid pLDW-31, complete sequence	74066-74091	6	0.769
NZ_CP011280_3	3.9\|588965\|26\|NZ_CP011280\|CRISPRCasFinder	588965-588990	26	NZ_CP028239	Lactobacillus plantarum strain SRCM101511 plasmid unnamed4, complete sequence	12683-12708	6	0.769
NZ_CP011280_3	3.10\|589028\|26\|NZ_CP011280\|CRISPRCasFinder	589028-589053	26	NZ_LR215002	Mycoplasma conjunctivae strain NCTC10147 plasmid 6	703-728	6	0.769
NZ_CP011280_3	3.13\|589216\|26\|NZ_CP011280\|CRISPRCasFinder	589216-589241	26	AP014473	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1-MedDCM-OCT-S32-C86, * SEQUENCING IN PROGRESS *, 3 ordered pieces	16094-16119	6	0.769
NZ_CP011280_3	3.14\|588465\|27\|NZ_CP011280\|CRT	588465-588491	27	MN693182	Marine virus AFVG_25M24, complete genome	40993-41019	6	0.778
NZ_CP011280_3	3.15\|588528\|27\|NZ_CP011280\|CRT	588528-588554	27	NZ_CP024775	Bacillus thuringiensis LM1212 plasmid pLM4, complete sequence	29948-29974	6	0.778
NZ_CP011280_3	3.15\|588528\|27\|NZ_CP011280\|CRT	588528-588554	27	NZ_CP026119	Halobacillus litoralis strain ERB 031 plasmid pLDW-31, complete sequence	74065-74091	6	0.778
NZ_CP011280_3	3.15\|588528\|27\|NZ_CP011280\|CRT	588528-588554	27	NZ_CP041077	Bacillus tropicus strain LM1212-W3 plasmid p4, complete sequence	17326-17352	6	0.778
NZ_CP011280_3	3.17\|588653\|27\|NZ_CP011280\|CRT	588653-588679	27	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	42087-42113	6	0.778
NZ_CP011280_3	3.17\|588653\|27\|NZ_CP011280\|CRT	588653-588679	27	MT708547	Klebsiella phage Muenster, complete genome	164195-164221	6	0.778
NZ_CP011280_3	3.17\|588653\|27\|NZ_CP011280\|CRT	588653-588679	27	AB897757	Klebsiella phage K64-1 DNA, complete genome	42095-42121	6	0.778
NZ_CP011280_3	3.23\|589028\|27\|NZ_CP011280\|CRT,PILER-CR	589028-589054	27	KJ018209	Shewanella sp. phage 1/4, complete genome	98497-98523	6	0.778
NZ_CP011280_3	3.23\|589028\|27\|NZ_CP011280\|CRT,PILER-CR	589028-589054	27	NZ_CP053689	Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence	103576-103602	6	0.778
NZ_CP011280_1	1.1\|6308\|28\|NZ_CP011280\|CRISPRCasFinder	6308-6335	28	NZ_KX833210	Salmonella enterica subsp. enterica serovar Typhi strain Salmonella Typhi Ty031 plasmid pTy031_01 plasmid pTy031_01, complete sequence	38927-38954	7	0.75
NZ_CP011280_1	1.1\|6308\|28\|NZ_CP011280\|CRISPRCasFinder	6308-6335	28	NZ_CP012100	Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence	51173-51200	7	0.75
NZ_CP011280_1	1.1\|6308\|28\|NZ_CP011280\|CRISPRCasFinder	6308-6335	28	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	48054-48081	7	0.75
NZ_CP011280_1	1.1\|6308\|28\|NZ_CP011280\|CRISPRCasFinder	6308-6335	28	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	18202-18229	7	0.75
NZ_CP011280_1	1.1\|6308\|28\|NZ_CP011280\|CRISPRCasFinder	6308-6335	28	NZ_CP021954	Klebsiella pneumoniae strain AR_0148 plasmid tig00001025alt_u_pilon, complete sequence	1166-1193	7	0.75
NZ_CP011280_3	3.22\|588965\|27\|NZ_CP011280\|CRT	588965-588991	27	NZ_CP028239	Lactobacillus plantarum strain SRCM101511 plasmid unnamed4, complete sequence	12682-12708	7	0.741
NZ_CP011280_3	3.23\|589028\|27\|NZ_CP011280\|CRT,PILER-CR	589028-589054	27	NZ_LR215002	Mycoplasma conjunctivae strain NCTC10147 plasmid 6	702-728	7	0.741
NZ_CP011280_3	3.26\|589216\|27\|NZ_CP011280\|CRT,PILER-CR	589216-589242	27	AP014473	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1-MedDCM-OCT-S32-C86, * SEQUENCING IN PROGRESS *, 3 ordered pieces	16094-16120	7	0.741
NZ_CP011280_1	1.1\|6308\|28\|NZ_CP011280\|CRISPRCasFinder	6308-6335	28	NZ_CP015631	Borrelia turicatae strain BTE5EL plasmid lp24	20741-20768	8	0.714
NZ_CP011280_1	1.1\|6308\|28\|NZ_CP011280\|CRISPRCasFinder	6308-6335	28	NZ_CP019367	Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence	3357-3384	8	0.714
NZ_CP011280_1	1.1\|6308\|28\|NZ_CP011280\|CRISPRCasFinder	6308-6335	28	NZ_CP015633	Borrelia turicatae strain BTE5EL plasmid lp31	3242-3269	8	0.714

1. spacer 3.4|588653|26|NZ_CP011280|CRISPRCasFinder matches to MK798156 (Enterococcus hirae strain fas4 plasmid pfas4-2, complete sequence) position: , mismatch: 3, identity: 0.885

cgatataatctacatagtttggataa	CRISPR spacer
ctatataatttacatagtttgaataa	Protospacer
* *******.***********.****

2. spacer 3.17|588653|27|NZ_CP011280|CRT matches to MK798156 (Enterococcus hirae strain fas4 plasmid pfas4-2, complete sequence) position: , mismatch: 3, identity: 0.889

cgatataatctacatagtttggataat	CRISPR spacer
ctatataatttacatagtttgaataat	Protospacer
* *******.***********.*****

3. spacer 3.2|588528|26|NZ_CP011280|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 4, identity: 0.846

cctttaattcttttacaaaagttaat	CRISPR spacer
tttttaattcttttacaaaagaaaat	Protospacer
..*******************  ***

4. spacer 3.2|588528|26|NZ_CP011280|CRISPRCasFinder matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

cctttaattcttttacaaaagttaat	CRISPR spacer
tattttattcttttacaaaagttact	Protospacer
. *** ****************** *

5. spacer 3.2|588528|26|NZ_CP011280|CRISPRCasFinder matches to NZ_CP051549 (Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1) position: , mismatch: 4, identity: 0.846

cctttaattcttttacaaaagttaat	CRISPR spacer
tcattaattctgtaacaaaagttaat	Protospacer
.* ******** * ************

6. spacer 3.15|588528|27|NZ_CP011280|CRT matches to NZ_CP051549 (Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1) position: , mismatch: 4, identity: 0.852

cctttaattcttttacaaaagttaatt	CRISPR spacer
tcattaattctgtaacaaaagttaatt	Protospacer
.* ******** * *************

7. spacer 3.1|588465|26|NZ_CP011280|CRISPRCasFinder matches to MN693182 (Marine virus AFVG_25M24, complete genome) position: , mismatch: 5, identity: 0.808

caagggtggtacaacagattaaataa	CRISPR spacer
gaagcttggtacaacagattaaattc	Protospacer
 ***  ******************

8. spacer 3.2|588528|26|NZ_CP011280|CRISPRCasFinder matches to CP053591 (Aquimarina sp. TRL1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

cctttaattcttttacaaaagttaat	CRISPR spacer
gatttatttctttaacaaaagttaaa	Protospacer
  **** ****** ***********

9. spacer 3.2|588528|26|NZ_CP011280|CRISPRCasFinder matches to NZ_CP024775 (Bacillus thuringiensis LM1212 plasmid pLM4, complete sequence) position: , mismatch: 5, identity: 0.808

cctttaattcttttacaaaagttaat	CRISPR spacer
aatttaattattttacaaatgttaaa	Protospacer
  ******* ********* *****

10. spacer 3.2|588528|26|NZ_CP011280|CRISPRCasFinder matches to NZ_CP051683 (Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cctttaattcttttacaaaagttaat	CRISPR spacer
tggttaattattttacaaaaggtaat	Protospacer
.  ****** *********** ****

11. spacer 3.2|588528|26|NZ_CP011280|CRISPRCasFinder matches to NZ_CP041077 (Bacillus tropicus strain LM1212-W3 plasmid p4, complete sequence) position: , mismatch: 5, identity: 0.808

cctttaattcttttacaaaagttaat	CRISPR spacer
aatttaattattttacaaatgttaaa	Protospacer
  ******* ********* *****

12. spacer 3.4|588653|26|NZ_CP011280|CRISPRCasFinder matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 5, identity: 0.808

cgatataatctacatagtttggataa	CRISPR spacer
agtaataatctacattgtttggatac	Protospacer
 *  *********** *********

13. spacer 3.4|588653|26|NZ_CP011280|CRISPRCasFinder matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 5, identity: 0.808

cgatataatctacatagtttggataa	CRISPR spacer
agtaataatctacattgtttggatac	Protospacer
 *  *********** *********

14. spacer 3.4|588653|26|NZ_CP011280|CRISPRCasFinder matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 5, identity: 0.808

cgatataatctacatagtttggataa	CRISPR spacer
agtaataatctacattgtttggatac	Protospacer
 *  *********** *********

15. spacer 3.10|589028|26|NZ_CP011280|CRISPRCasFinder matches to KJ018209 (Shewanella sp. phage 1/4, complete genome) position: , mismatch: 5, identity: 0.808

tggaataaataatgcaacaattgtaa	CRISPR spacer
agtaataaataatgcaacaattggtt	Protospacer
 * ********************

16. spacer 3.10|589028|26|NZ_CP011280|CRISPRCasFinder matches to NZ_CP053689 (Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

tggaataaataatgcaacaattgtaa	CRISPR spacer
tgcactaaataatgcaacaattgctg	Protospacer
** * ******************. .

17. spacer 3.10|589028|26|NZ_CP011280|CRISPRCasFinder matches to MN693379 (Marine virus AFVG_25M207, complete genome) position: , mismatch: 5, identity: 0.808

tggaataaataatgcaacaattgtaa	CRISPR spacer
aacaataaacaatgcaacaatagtaa	Protospacer
 . ******.*********** ****

18. spacer 3.13|589216|26|NZ_CP011280|CRISPRCasFinder matches to MT457553 (Shewanella phage Thanatos-2, complete genome) position: , mismatch: 5, identity: 0.808

atatgtattttgaatattaggtatct	CRISPR spacer
atattcattttgaatattaggtaagg	Protospacer
**** .*****************

19. spacer 3.13|589216|26|NZ_CP011280|CRISPRCasFinder matches to MT457552 (Shewanella phage Thanatos-1, complete genome) position: , mismatch: 5, identity: 0.808

atatgtattttgaatattaggtatct	CRISPR spacer
atattcattttgaatattaggtaagg	Protospacer
**** .*****************

20. spacer 3.15|588528|27|NZ_CP011280|CRT matches to NZ_CP051683 (Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

cctttaattcttttacaaaagttaatt	CRISPR spacer
tggttaattattttacaaaaggtaatt	Protospacer
.  ****** *********** *****

21. spacer 3.15|588528|27|NZ_CP011280|CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 5, identity: 0.815

cctttaattcttttacaaaagttaatt	CRISPR spacer
tttttaattcttttacaaaagaaaatc	Protospacer
..*******************  ***.

22. spacer 3.15|588528|27|NZ_CP011280|CRT matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

cctttaattcttttacaaaagttaatt	CRISPR spacer
tattttattcttttacaaaagttactg	Protospacer
. *** ****************** *

23. spacer 3.15|588528|27|NZ_CP011280|CRT matches to CP053591 (Aquimarina sp. TRL1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cctttaattcttttacaaaagttaatt	CRISPR spacer
gatttatttctttaacaaaagttaaat	Protospacer
  **** ****** *********** *

24. spacer 3.23|589028|27|NZ_CP011280|CRT,PILER-CR matches to MN693379 (Marine virus AFVG_25M207, complete genome) position: , mismatch: 5, identity: 0.815

tggaataaataatgcaacaattgtaat	CRISPR spacer
aacaataaacaatgcaacaatagtaat	Protospacer
 . ******.*********** *****

25. spacer 3.26|589216|27|NZ_CP011280|CRT,PILER-CR matches to MT457553 (Shewanella phage Thanatos-2, complete genome) position: , mismatch: 5, identity: 0.815

atatgtattttgaatattaggtatctt	CRISPR spacer
atattcattttgaatattaggtaaggt	Protospacer
**** .*****************   *

26. spacer 3.26|589216|27|NZ_CP011280|CRT,PILER-CR matches to MT457552 (Shewanella phage Thanatos-1, complete genome) position: , mismatch: 5, identity: 0.815

atatgtattttgaatattaggtatctt	CRISPR spacer
atattcattttgaatattaggtaaggt	Protospacer
**** .*****************   *

27. spacer 1.1|6308|28|NZ_CP011280|CRISPRCasFinder matches to NZ_CP017185 (Enterobacter roggenkampii strain DSM 16690 plasmid pDSMZ16690, complete sequence) position: , mismatch: 6, identity: 0.786

gggtagaaagtttggataaaataatatc	CRISPR spacer
gaaaagaaagtctggataaaataataga	Protospacer
*.. *******.**************

28. spacer 3.2|588528|26|NZ_CP011280|CRISPRCasFinder matches to NZ_CP026119 (Halobacillus litoralis strain ERB 031 plasmid pLDW-31, complete sequence) position: , mismatch: 6, identity: 0.769

cctttaattcttttacaaaagttaat	CRISPR spacer
tctttaattcttttacaaaacccaca	Protospacer
.******************* ..*

29. spacer 3.9|588965|26|NZ_CP011280|CRISPRCasFinder matches to NZ_CP028239 (Lactobacillus plantarum strain SRCM101511 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.769

tagaacatattaatcgtagttgcaca	CRISPR spacer
aagagcatattaatcgtagttgtgat	Protospacer
 ***.*****************..

30. spacer 3.10|589028|26|NZ_CP011280|CRISPRCasFinder matches to NZ_LR215002 (Mycoplasma conjunctivae strain NCTC10147 plasmid 6) position: , mismatch: 6, identity: 0.769

tggaataaataatgcaacaattgtaa	CRISPR spacer
actgaagaataatgcaacaattgtaa	Protospacer
   .* .*******************

31. spacer 3.13|589216|26|NZ_CP011280|CRISPRCasFinder matches to AP014473 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1-MedDCM-OCT-S32-C86, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 6, identity: 0.769

atatgtattttgaatattaggtatct	CRISPR spacer
tactgtattttgaatatcaggtatga	Protospacer
   **************.******

32. spacer 3.14|588465|27|NZ_CP011280|CRT matches to MN693182 (Marine virus AFVG_25M24, complete genome) position: , mismatch: 6, identity: 0.778

caagggtggtacaacagattaaataat	CRISPR spacer
gaagcttggtacaacagattaaattca	Protospacer
 ***  ******************

33. spacer 3.15|588528|27|NZ_CP011280|CRT matches to NZ_CP024775 (Bacillus thuringiensis LM1212 plasmid pLM4, complete sequence) position: , mismatch: 6, identity: 0.778

cctttaattcttttacaaaagttaatt	CRISPR spacer
aatttaattattttacaaatgttaaaa	Protospacer
  ******* ********* *****

34. spacer 3.15|588528|27|NZ_CP011280|CRT matches to NZ_CP026119 (Halobacillus litoralis strain ERB 031 plasmid pLDW-31, complete sequence) position: , mismatch: 6, identity: 0.778

cctttaattcttttacaaaagttaatt	CRISPR spacer
tctttaattcttttacaaaacccacat	Protospacer
.******************* ..*  *

35. spacer 3.15|588528|27|NZ_CP011280|CRT matches to NZ_CP041077 (Bacillus tropicus strain LM1212-W3 plasmid p4, complete sequence) position: , mismatch: 6, identity: 0.778

cctttaattcttttacaaaagttaatt	CRISPR spacer
aatttaattattttacaaatgttaaaa	Protospacer
  ******* ********* *****

36. spacer 3.17|588653|27|NZ_CP011280|CRT matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 6, identity: 0.778

cgatataatctacatagtttggataat	CRISPR spacer
agtaataatctacattgtttggatacc	Protospacer
 *  *********** ********* .

37. spacer 3.17|588653|27|NZ_CP011280|CRT matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 6, identity: 0.778

cgatataatctacatagtttggataat	CRISPR spacer
agtaataatctacattgtttggatacc	Protospacer
 *  *********** ********* .

38. spacer 3.17|588653|27|NZ_CP011280|CRT matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 6, identity: 0.778

cgatataatctacatagtttggataat	CRISPR spacer
agtaataatctacattgtttggatacc	Protospacer
 *  *********** ********* .

39. spacer 3.23|589028|27|NZ_CP011280|CRT,PILER-CR matches to KJ018209 (Shewanella sp. phage 1/4, complete genome) position: , mismatch: 6, identity: 0.778

tggaataaataatgcaacaattgtaat	CRISPR spacer
agtaataaataatgcaacaattggttc	Protospacer
 * ********************   .

40. spacer 3.23|589028|27|NZ_CP011280|CRT,PILER-CR matches to NZ_CP053689 (Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

tggaataaataatgcaacaattgtaat	CRISPR spacer
tgcactaaataatgcaacaattgctgg	Protospacer
** * ******************. .

41. spacer 1.1|6308|28|NZ_CP011280|CRISPRCasFinder matches to NZ_KX833210 (Salmonella enterica subsp. enterica serovar Typhi strain Salmonella Typhi Ty031 plasmid pTy031_01 plasmid pTy031_01, complete sequence) position: , mismatch: 7, identity: 0.75

gggtagaaagtttggataaaataatatc	CRISPR spacer
cgttagaacgtttggataaaataagtaa	Protospacer
 * ***** ***************

42. spacer 1.1|6308|28|NZ_CP011280|CRISPRCasFinder matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 7, identity: 0.75

gggtagaaagtttggataaaataatatc	CRISPR spacer
taagagaaagtttagataaaataaaatt	Protospacer
 .. *********.********** **.

43. spacer 1.1|6308|28|NZ_CP011280|CRISPRCasFinder matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 7, identity: 0.75

gggtagaaagtttggataaaataatatc	CRISPR spacer
taagagaaagtttagataaaataaaatt	Protospacer
 .. *********.********** **.

44. spacer 1.1|6308|28|NZ_CP011280|CRISPRCasFinder matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 7, identity: 0.75

gggtagaaagtttggataaaataatatc	CRISPR spacer
taagagaaagtttagataaaataaaatt	Protospacer
 .. *********.********** **.

45. spacer 1.1|6308|28|NZ_CP011280|CRISPRCasFinder matches to NZ_CP021954 (Klebsiella pneumoniae strain AR_0148 plasmid tig00001025alt_u_pilon, complete sequence) position: , mismatch: 7, identity: 0.75

gggtagaaagtttggataaaataatatc	CRISPR spacer
cgttagaacgtttggataaaataagtaa	Protospacer
 * ***** ***************

46. spacer 3.22|588965|27|NZ_CP011280|CRT matches to NZ_CP028239 (Lactobacillus plantarum strain SRCM101511 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.741

tagaacatattaatcgtagttgcacag	CRISPR spacer
aagagcatattaatcgtagttgtgatt	Protospacer
 ***.*****************..

47. spacer 3.23|589028|27|NZ_CP011280|CRT,PILER-CR matches to NZ_LR215002 (Mycoplasma conjunctivae strain NCTC10147 plasmid 6) position: , mismatch: 7, identity: 0.741

tggaataaataatgcaacaattgtaat	CRISPR spacer
actgaagaataatgcaacaattgtaag	Protospacer
   .* .*******************

48. spacer 3.26|589216|27|NZ_CP011280|CRT,PILER-CR matches to AP014473 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C1-MedDCM-OCT-S32-C86, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 7, identity: 0.741

atatgtattttgaatattaggtatctt	CRISPR spacer
tactgtattttgaatatcaggtatgag	Protospacer
   **************.******

49. spacer 1.1|6308|28|NZ_CP011280|CRISPRCasFinder matches to NZ_CP015631 (Borrelia turicatae strain BTE5EL plasmid lp24) position: , mismatch: 8, identity: 0.714

gggtagaaagtttggataaaataatatc	CRISPR spacer
aattagaaagtttggaaaaaataaggga	Protospacer
.. ************* ******* .

50. spacer 1.1|6308|28|NZ_CP011280|CRISPRCasFinder matches to NZ_CP019367 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence) position: , mismatch: 8, identity: 0.714

gggtagaaagtttggataaaataatatc	CRISPR spacer
aattagaaagtttggaaaaaataaggga	Protospacer
.. ************* ******* .

51. spacer 1.1|6308|28|NZ_CP011280|CRISPRCasFinder matches to NZ_CP015633 (Borrelia turicatae strain BTE5EL plasmid lp31) position: , mismatch: 8, identity: 0.714

gggtagaaagtttggataaaataatatc	CRISPR spacer
aattagaaagtttggaaaaaataaggga	Protospacer
.. ************* ******* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

543515 : 563728

Clostridium_phage(26.67%)

capsid,terminase,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046328556.1\|543515_544625_-	hypothetical protein	A0A1S5SAB0	Streptococcus_phage	8.2e-54	37.5
WP_158500354.1\|544659_545097_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_052727666.1\|545109_545517_-	helix-turn-helix transcriptional regulator	A0A2K9V426	Faecalibacterium_phage	2.6e-05	44.3
WP_046328558.1\|546173_546356_+	hypothetical protein	NA	NA	NA	NA
WP_046328559.1\|546344_546761_-	hypothetical protein	NA	NA	NA	NA
WP_046328560.1\|546824_547043_+	DUF739 family protein	NA	NA	NA	NA
WP_144406242.1\|547576_548125_+	oxidoreductase	F8UBP6	Clostridium_phage	1.3e-36	48.6
WP_046328563.1\|548118_548364_+	hypothetical protein	NA	NA	NA	NA
WP_052727667.1\|548379_548832_+	hypothetical protein	F8J196	Lactobacillus_virus	3.0e-18	46.1
WP_046328564.1\|548872_549091_+	hypothetical protein	NA	NA	NA	NA
WP_046328565.1\|549103_550120_+	hypothetical protein	A0A139ZPJ9	Marinitoga_camini_virus	6.2e-32	37.7
WP_046328566.1\|550123_550984_+	recombination protein RecT	S6AVW6	Thermus_phage	4.0e-56	50.6
WP_046328567.1\|550976_551354_+	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	3.7e-14	43.7
WP_046328568.1\|551379_551688_+	HTH domain-containing protein	NA	NA	NA	NA
WP_046328569.1\|551951_552611_+	hypothetical protein	NA	NA	NA	NA
WP_046329259.1\|552612_552993_+	hypothetical protein	A0A2I2L3K7	Orpheovirus	3.0e-24	50.0
WP_046328570.1\|553131_553353_+	hypothetical protein	NA	NA	NA	NA
WP_046328571.1\|553369_553645_+	hypothetical protein	NA	NA	NA	NA
WP_046328572.1\|553641_553893_+	hypothetical protein	NA	NA	NA	NA
WP_046328573.1\|553882_554134_+	hypothetical protein	NA	NA	NA	NA
WP_046328574.1\|554147_554579_+	dUTP diphosphatase	A0A172PZW2	Pseudomonas_phage	2.8e-26	46.9
WP_046328575.1\|554559_554766_+	hypothetical protein	NA	NA	NA	NA
WP_046328576.1\|554938_555550_+	hypothetical protein	NA	NA	NA	NA
WP_046328577.1\|555567_556077_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_052727668.1\|556340_556760_+\|terminase	terminase small subunit	A0A059NT97	Lactococcus_phage	4.2e-11	46.2
WP_046328578.1\|556763_558173_+\|terminase	phage terminase large subunit	A0A1X9I6G4	Streptococcus_phage	3.0e-141	57.8
WP_158500355.1\|558239_559649_+\|portal	phage portal protein	A0A0A7S074	Clostridium_phage	1.9e-87	38.9
WP_046328579.1\|559651_561358_+\|capsid	minor capsid protein	X5JAI9	Clostridium_phage	3.8e-50	35.3
WP_046328580.1\|561372_561582_+	hypothetical protein	NA	NA	NA	NA
WP_046328581.1\|561630_561990_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_052727670.1\|562098_562677_+	hypothetical protein	A0A1Z1LZK8	Bacillus_phage	4.2e-09	32.7
WP_046328582.1\|562690_563728_+	hypothetical protein	A0A0A7RTH8	Clostridium_phage	6.0e-99	53.2

DBSCAN-SWA_2

1067501 : 1077029

Paenibacillus_phage(16.67%)

integrase,tRNA

attL 1062697:1062715|attR 1086549:1086567

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1062697:1062715	attL	NA	NA	NA	NA
WP_046328996.1\|1067501_1068269_-	MBL fold metallo-hydrolase	A0A0C5AJ36	Paenibacillus_phage	1.7e-26	32.5
WP_046328997.1\|1068353_1069472_-	GTPase RsgA	NA	NA	NA	NA
WP_046328998.1\|1069464_1070373_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	4.1e-27	30.7
WP_144406245.1\|1070372_1072613_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	5.1e-95	35.5
WP_052727714.1\|1072569_1073409_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	3.5e-20	29.7
WP_052727715.1\|1073417_1074143_-	hypothetical protein	NA	NA	NA	NA
WP_148549086.1\|1074151_1075525_-\|tRNA	asparagine--tRNA ligase	L7XZ60	Megavirus	8.0e-91	41.3
WP_046329001.1\|1075607_1077029_-	hypothetical protein	A0A1B3AYT3	Gordonia_phage	2.0e-60	32.9
1086549:1086567	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011280

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection