CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015844	Zobellia galactanivorans, complete genome	1 crisprs	DEDDh,cas3,csa3,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015844_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015844_1

2524828-2524931

Orphan

Consensus_repeat	Method
TCAGACCTCACGGGTCTCCAAGACCCGTGAGGTCTCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015844_1

>merge|NC_015844|1|2524828-2524931|CRISPRCasFinder
TCAGACCTCACGGGTCTCCAAGACCCGTGAGGTCTCATTTTTTCGGTGAGACCTGATGTTTTTAGTTCAGACCTCACGGGTCTTCAAGACCCGTGAGGTCTCAT

>NC_015844|1|1|2524828-2524931|CRISPRCasFinder
TCAGACCTCACGGGTCTCCAAGACCCGTGAGGTCTCAT	TTTTTCGGTGAGACCTGATGTTTTTAGT
TCAGACCTCACGGGTCTTCAAGACCCGTGAGGTCTCAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015844.1\|WP_046287859.1\|2523756_2524776_-\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033
NC_015844.1\|WP_013993507.1\|2513775_2517507_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197666
NC_015844.1\|WP_013993517.1\|2525561_2526656_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NC_015844.1\|WP_013993521.1\|2530056_2530404_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468
NC_015844.1\|WP_013993505.1\|2508920_2510510_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NC_015844.1\|WP_013993518.1\|2526662_2526941_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NC_015844.1\|WP_013993520.1\|2529293_2529989_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|349775
NC_015844.1\|WP_013993516.1\|2524951_2525512_-\|transposase	unknown	unknown	unknown
NC_015844.1\|WP_013993509.1\|2518200_2518656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237177
NC_015844.1\|WP_013993512.1\|2520336_2521611_-\|iota-carrageenase	unknown	unknown	gnl\|CDD\|378931
NC_015844.1\|WP_013993523.1\|2531859_2532117_-\|hypothetical-protein	unknown	unknown	unknown
NC_015844.1\|WP_013993525.1\|2532430_2532910_-\|hydrogenase-maturation-protease	unknown	unknown	gnl\|CDD\|99874
NC_015844.1\|WP_013993506.1\|2510531_2513597_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NC_015844.1\|WP_013993524.1\|2532113_2532434_-\|hypothetical-protein	unknown	unknown	unknown
NC_015844.1\|WP_013993514.1\|2522603_2523698_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271320
NC_015844.1\|WP_013993508.1\|2517694_2518060_-\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|378240
NC_015844.1\|WP_013993519.1\|2526944_2529206_-\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
NC_015844.1\|WP_013993511.1\|2518800_2520198_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NC_015844.1\|WP_013993522.1\|2530403_2531885_-\|hypothetical-protein	unknown	unknown	unknown
NC_015844.1\|WP_013993513.1\|2521902_2522607_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|236641

Protein	Function_ID	Function_description	E-value
NC_015844.1\|WP_046287859.1\|2523756_2524776_-\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	2.031e-155
NC_015844.1\|WP_013993507.1\|2513775_2517507_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.32811e-22
NC_015844.1\|WP_013993517.1\|2525561_2526656_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NC_015844.1\|WP_013993521.1\|2530056_2530404_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	9.90313e-28
NC_015844.1\|WP_013993518.1\|2526662_2526941_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	3.46976e-30
NC_015844.1\|WP_013993520.1\|2529293_2529989_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|349775	cd05390, HypB, nickel incorporation protein HypB. HypB is one of numerous accessory proteins required for the maturation of nickel-dependent hydrogenases, like carbon monoxide dehydrogenase or urease. HypB is a GTP-binding protein and has GTP hyrolase activity. It forms homodimer and is capable of binding two nickel ions and two zinc ions. The active site is located on the dimer interface. Energy from hydrolysis of GTP is used to insert nickels into hydrogenases.	2.55845e-105
NC_015844.1\|WP_013993505.1\|2508920_2510510_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	2.5329e-37
NC_015844.1\|WP_013993509.1\|2518200_2518656_-\|hypothetical-protein	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0.00234287
NC_015844.1\|WP_013993512.1\|2520336_2521611_-\|iota-carrageenase	gnl\|CDD\|378931	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.	4.01201e-06
NC_015844.1\|WP_013993525.1\|2532430_2532910_-\|hydrogenase-maturation-protease	gnl\|CDD\|99874	cd06063, H2MP_Cyano-H2up, This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.	2.84786e-40
NC_015844.1\|WP_013993506.1\|2510531_2513597_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_015844.1\|WP_013993514.1\|2522603_2523698_-\|hypothetical-protein	gnl\|CDD\|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	4.77217e-17
NC_015844.1\|WP_013993508.1\|2517694_2518060_-\|DUF4870-domain-containing-protein	gnl\|CDD\|378240	pfam09685, DUF4870, Domain of unknown function (DUF4870).	4.12107e-32
NC_015844.1\|WP_013993519.1\|2526944_2529206_-\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
NC_015844.1\|WP_013993511.1\|2518800_2520198_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NC_015844.1\|WP_013993513.1\|2521902_2522607_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|236641	PRK10019, PRK10019, nickel/cobalt efflux transporter RcnA.	0.00297566

>NC_015844.1|WP_046287859.1|2523756_2524776_-|hydrogenase-expression/formation-protein-HypE
MPKLDFDVITLGHGSGGVLTNKLLDSGVFDLLSNDILNERHDGAFLELNGKTAFSTDSFLVSPIFFPGGNIGELAVNGTVNDLAMCGATPKYLSLSFIIEEGLPVKEFWDILVAIKFACEKAGVQIVTGDTKVVEKGKGDKIFVNTSGVGPIHPKANISAKNIAVGDKIIISGNIASHGMAIMSVREGLEFDSEIESDTTNLNHTVIKLIDEFGGDIHLLTDPTRGGVATVLKEIAQSSEIGIDLFQKDLPIDNQVASACELLGLDPLYVANEGLFIAFVPEASADAVLERLQQDEKGKNARIIGSVVGEHPKQVIMESAIGGKRVISMLPGEQLPRIC
>NC_015844.1|WP_013993514.1|2522603_2523698_-|hypothetical-protein
MNFETLGPNVSNSYIFKGSEQTPFLAPRGVFVANGHLFVSDTGRNRVFIWKTLPTTEYQEPDVVLGQTDMEETGRNSGGLASEHTLHYPSGIWSDGNLLIVGDAWNHRVLIWHTLPTKNGQAADVVVGQPDFVSNQPNVAGIGNDPSARSLNWPYGVFSDGTRLWIADTGNRRILFYHDIPKTNYKTADKVIGKPDFTTRDYENHEPIWPYSVKVNANKQMVVADTQFYRNLVWNNAEEAFSKPADVIVGQADFDACGQNQFGLFPNARSLNWTYDACFYKGGLLVNDTGNSRILWFESIPKTHNAEATAVIGKRDFKTGSENKDTLHGTSSSLYWPFSICTQGNKLIIADTGNHRLVLTNLKF
>NC_015844.1|WP_013993513.1|2521902_2522607_+|sulfite-exporter-TauE/SafE-family-protein
MISFPLFAGIAAAVLHVVSGPDHLAAVTPLAIETRRKVWKIGLFWGFGHLVGMLLIGLLFLAFREYIPIERISEHSEQLVGVVLIAIGLWALVSLFYKAKNHKHPHVHDGDEPYIHVHEHDHDANKLEHSHPHDKKVKQNVWSSFGIGVLHGLAGVAHFILLLPVLGFESQGDSLQYIIGFGIGTVLAMTIYTFLLGKVSGYAKGQSKSLFKMVRLSGGLFAIFVGVYWLYLGL
>NC_015844.1|WP_013993512.1|2520336_2521611_-|iota-carrageenase
MKKIQMYLATIALSALLVQCEINDYIGSGSDQEPSQCKIDDDRVQKNLVVDYGADGTDQENDSKQLQQAIDEVSAIDGGGIIFIPQGQYYLSEISLKSNVHLSFEDGTIIKPIGRENNKNYSVFYLGVNSGVVKNVKITGSCGKFTVDLREVENTNVRVIQCGNVDGFVLSDFGVLDQLTKFSAITFGLASYDGKYFGPRNGTVKNISAFSTHYGYGLVQAQVGKNVEFKNLYSEGGVTLRLETGENKFNELQPEGLGIFDIKAKNIIGENGNSAVMISPHTIKNGHVHIKNVVANNCGFAVRIDKGFANKSQSELGISPGYFKNPTISNVKATYGTTSQLKWKHWDKYLDCDSRALLTPNPDEFTGNLGKEIFIGPSITPILYDASGEGPGHYEATISRVTKKGFGPTQKSIITENDKVNCTP
>NC_015844.1|WP_013993511.1|2518800_2520198_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MIPNDNIIALATPSGAGAIAVIRISGEKAIDIVAPFFQSAYGKDLTKKKSHTISLGHIVDGGKLLDEVLVSVFKGPNSYTGENVVEISCHGSPFIQQQLIQLFLRNGCRTAEAGEFTLRAFLNGKMDLSQAEAVADLIASDNAASHQIAMQQMRGGFSNEIKSLRQELLNFASLIELELDFSEEDVEFADRTQFKELLGRIQKVLKGLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNAFLNEERALVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETEDVVEGMGIKRTFEKIEQAQVVLLLVDGAKLRANNDKLKNIVVDFEKIKNRNPQKPLLLLVNKADTLTEKDKENIAGALSEVRYISAKTGEGVEDLQNKLLEFVNTGALRNNETIVTNTRHYNSLLKALEEIEKVQFGMEEGLSSDLMAIDVREALYHLGEITGQVTNDELLGNIFANFCIGK
>NC_015844.1|WP_013993509.1|2518200_2518656_-|hypothetical-protein
MKIRLLTFCVIFIGVTTLTFAQEEEGEVQNDSISQVEQAEREAKEIRKQIEAAEREAKEAEKAAKAAKKEQKRADKAAKRIEKLNDKISAIRKTLDRDEKKVSKISNKMEVDKIKGKLSPNDITKIEKKLSKLKSSIAKNQEKLLKIERKL
>NC_015844.1|WP_013993508.1|2517694_2518060_-|DUF4870-domain-containing-protein
MEVINQNKSLEKNNQLLVIAHLSQLLTYVTGFGGLIVPLILWLSTKDNVDGMDEHGKSIVNFQLSMLLFTILSIPAILLLGLGILSLIFIGIIAFVIPIVNAVKASNGETPSNFMTIRFIS
>NC_015844.1|WP_013993507.1|2513775_2517507_-|helix-turn-helix-domain-containing-protein
MKPPYLLLYALLILLSINPVFGQNIKFKTLSTNDGLSNNSITDLISDDDGILWIATWDGLNSYNGQKFTVYKHDIKNSTSIAGNNIQHLKKDGQGNIWIVTKDKKISKHLGNGKFQNFSFDEPLQYMALTKEGGIGIRTDNTRYEFIDGDFKKAQFVEKKKEDNSILRELLLDKFPNTIINDVLKDKSGHIWYATRRNGIYIIPNSTTNRDNEQIDHYFHDLYDPYSFDSNEVEKIYEDSFGNIWLGHKDGGLSMAYSGSEQISTIIPHPNKYPHLPNETIRAITKDFNNRIWLGYYTKGLFYFDQEEPCYLKYHIAEAQENSDWGRVRSLYTTSNGEIWAGTYAGIIRIKKNGYTLYQSKNTANLPNDRNYSFQEDNGNQLYIACWGGVAKFNLKTDSFEAFKGQSALAPYHIRNIEYADNELLVSTENEGLVLLDLATGELTDITVKDGLLGNSVYSSFKDKQSGYYWTGSLGGISVYDKNKGLIQHISEKQGLPSHMVYGLLLDSDKVWVSTTKGIAAVDRNDFSVTGLNMDEGWQAREFSEGAYYQDRKGTLFFAGINGLNYFSPASLNITKKLPKIKIEIDDTSDFTKGITKNFIDNSLDIKIEPVVFTQDPNNRVLYKLSGYDTDFQEFKEGQGPVHYTGLPDGEYIFEVKNSSAKDLAFKGIPIIIKKPFYKTILFYLLLLTTLLLSLTSWVLVRNRNIAQNQKELERKIEERTETINRQKERLLKVNHTLDEKNKEINRQREELLSSYHQLKNEDFEIEKFKTFVLSEFKEPVSKIIENTKELNEDDGTKRNINKESNKLITLLSEWDYLTNSKDIGELKKSATKIRQTIKVLVDGLATHARKSKINLDYTLDIEDQWVELDSLRFKLFFKYLFNDILKYLSKDSYLKLTVRTKGNSLGLFIKSDSKVLSDNFFSIQHYSPYYKASNTLLAAMEGNLSIEKNDELIISVHLPIKVVDTENNKVEEVLWKHLDLNEKLPSDKNNILVFCNDDDALPALQLFDHPDNNLIFEKTASAVSSAIKHVNIHCLALYNIPIDEQLVQLFHLIKSNGTQIAVSVLYVSEEINHSLRIQTTELGVDTFIQLPVSKSFIQSKISKLTSVRKEYANNTSKHLFYVPPFDETKTLSVNEKLVKKALALINKNLNDPSFNVQKLQELLFVSKIKCYRAFKEVLQQSPSDVIIKLRLQKAEFLLKNHTLNISEISIECGFNDPKYFSRLFKKNFDCSPKAYRAKTDNA
>NC_015844.1|WP_013993506.1|2510531_2513597_-|TonB-dependent-receptor
MKKVYLVLLIALGCISFSYSQVTVKGTVVSETDGMPVPSVSIVLKGETQTGTSTDFDGNFTLSLSEESGTLVFSSLGFATKEVNFSGDQVLNVSMNEEASFLDEVVLIGYGSSRKGDLTTAIATVSNVESIASRPVTNATEFLQGNVAGVTVLNQGGDPTSSGNVVIRGLGTFANESPLTVVDGVPYYGPAINPNDIASISVLKDAASAAIYGAQAASGVIVIQTKKGEMGKPRITVDYYGGIQEATNLPTPLTAQQQANTYNTAADNAGTPRQSAHDLEQNPYGQVNRTNWVDAIFRPAGMNNANINISGAGESMNYLTSFGYTKREGLLEGTSSERYNFRVKSDFDLSDKIKIGENVYFSKTEAVGTNTDNPYSGTIINAVYMPSASPTRYDDGSFAGVAPENLSQFAGAYGDVYNPLALLLRPTTNAPTNFLNANVFLEYKILNGLSFKTNYSYSYTHSQYKRFQPKVPELGRSNPNNYLDQTTSTTNRWVWDNQLSYKRSFGDHNLDLTAIYSSQHTDFESLSNRGEGFSNEDAFNQYLSNASVIRNPGTSVYEDALTSAIGRVMYNYKNRYFISGSIRRDMTSRLAVNNQADNFPSATVGWRLSDESFFNVEAINDLKFRASWGQIGNINSVGYYSFDVPLNTTVVTIGEDASHDDKGAYVGKQSNPNLNWEVSESVNFGIDAALFNNSLSLTFDYFEKSTKGMILPGLEDLHQGTSAADVNGGEVKNNGFEISASYSKQIGELDFTLNANTSVLENELVNLDGYNKSGIDFIAHSDNVRGVLRPFRSEVGRALYSVHVVPQLGIFQNQAEIDAYVKDGNLIQPNAQPGDFKFADSNNDGKIDDNDKVFYDSYQPDFTYNFGLNLNYKNFDLGMLFQGVSGVEVFNGYKFSTYNASLTGYNLDNRVLDAWSPSNTGATTPRLSTKDDNQNFGLASSWYLEDASYLRMKNVTLGYTINDRIMNTVLPGSSLRFYISAENLFTITDYTGMDPEVGGKGLDIARYPLSRTITAGLSLSL
>NC_015844.1|WP_013993505.1|2508920_2510510_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKFNSIKTMSLVLGFAGLNLISCSDDFTEVTPLGSTSYANFWASEQDASEAVNSMYQYMTDQEMFSRGFFWYINASDDMITGRIKASADNIKDFNITGGEGGYTSTCYPKSYQVIRRANDVILNVPNMEISESLKNQYLGEAYFMRAFSYFWVAHTYGDNGENGGVPIITEENMNDEAGSYSRPASVVENYKQIEADLMKAAELLPLFTEYSSDNYGRPHKDAAYAYMAKTNLYWAQHDASRYAEVVKYADAVTNSGSGRALINTGNPSKDYRELHSHLNNWTSEYIWSVNSGVDKGSILTGVMLENKGWGKYNGWGYYTPSEGLYNEFEDDDARKAVTILNFGDEFTFFGETRRYQSENSLSGFQFNKYMYEFQFENPIGTYLNSNGDDPSTVYNVPLMRYAEVLLMKAEALIMDGKNGDAPLNMVRERAGLAPITNATMSDLKHERRVELAGEFANRHFDLIRWGDAADTYAEPIYGRIYTDRSDPDSPYSSEIVWPARNFDASYMNVWPIPNTVIESSGIQQNKGW
>NC_015844.1|WP_013993516.1|2524951_2525512_-|transposase
MQYEPIRSDQYYHIYNQGNNGEDIFVEGRNYAYFLRLMYKYLDAISDIYAYCLLKNHFHIVLKFNENVADKVISQKLSNLFNSYAKAINKAYERTGSLFRDRFRRKRIEDENYLKNLIVYVHLNPEHHGFTNDFRRYKYSSYSSYLSDLPSKLDREFILGLFEDRSNFVHAHLNKKMELEKSLTLE
>NC_015844.1|WP_013993517.1|2525561_2526656_-|hydrogenase-formation-protein-HypD
MKYMSEYRDPALAKKYLEEIKRTVSRPWSIMEVCGGQTHSLVKNGIIDMLPDKVTMIHGPGCPVCVTPLNLIDKAVHLATEKGVILCSFGDMLRVPGSEKSLLEAKAEGADIRILYSPLEAVKIAKDNPDKEVVFFAVGFETTAPANALSVVHAHHRGVKNYSILASHVLVPPAIKAVMEDEESKIDGFLAAGHVCTIMGNTEYHPLSAEYKVPIVVTGFEPLDVLQGILMVIRQLEQSKSEVENQYARIVREEGNTEAQKIINEVFEVRHQMWRGIGEIPDSGYAVREKYAEYDATKKYEVSITEAPENPLCISGQIMKGIKKPFECSQFGKTCKPTNPLGAPMVSSEGACAAYYHFSGMVEA
>NC_015844.1|WP_013993518.1|2526662_2526941_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAIPGKIKSIESQYDGMVRMAKVSFGGITKEASLEMLPDADVGDYVLVHVGVAISKVDEEEAQKTFKYLEEIGELGDLEDVDEYLPKTDN
>NC_015844.1|WP_013993519.1|2526944_2529206_-|carbamoyltransferase-HypF
MEKTFQIIISGQVQGVGFRPFVYGLAHQYRLKGMVCNNENGVLIHISASEERATEFLHALLQKAPAISVIQSHSLSELPLRSYSDFRILPSESKHQIDIPLTPDFVICESCKSEIRNTAHRRFGYAFTTCTHCGPRYAITTKFPFERANTTMSKFHMCTPCETEYTDPNDRRFHSQTNSCTECGIQLRLTTADGIPIATDTPGIIKKVSGLILSGKIVALKNTNGYLLCCDANNKTAIGRLREKKQRPTKPFALLYPSLEKIKKDFELGTAEEKALTSSAGPIVILNPKKNISDLALGAIAPGLDQLGAMLASSALLTLLMDALKIPIIATSGNIHGSPIICEAEDAIQKLSGVADYFVHHNLNISFPQDDSVVRFAGEQRITLRRSRGLAPNYLNSPLSGNQKVLAMGAHLKSSFGFVPNTHTYVSPYFGNLDNYEVSQRYQESITKFTSLFETRPEIVLIDAHPQYQSSIMGRELADKWKAELYPIQHHKAHFASVLGEHRLFETEEKILGTVWDGTGLGDDGAIWGGEFFVFENGRIERLAHFEYVDWIAADKMAKEPRLSLLCMLPESEREVVRHKFSQTEWKVYNTMLKKNTLKTSSVGRLFDAVASLLDICDNTSYEGEAAMLLENEARNYTGGDPIDFLEGRASQNIPTRILTANILKAKTAGLAKSQIAHGFIHTLALSILKTARQNHCGTIACSGGVFQNSVLVEKLSQLAQKQGIKLKFNRILSSNDENISFGQLCYHQYIKN
>NC_015844.1|WP_013993520.1|2529293_2529989_-|hydrogenase-nickel-incorporation-protein-HypB
MVEKSTKAARGTVQCENTNIHLLKANDFVADIIKKEMAKTGTLLINITSSAGSGKTTLMQKTAEKLKDKINIAVMVGDLETERDADRIRETGIQALQIVTGGICHLEAQMVHQVLDQFDLENIDLLFIENVGNLVCPSSFDLGEDYRVTLMATTEGDDKPKKYPKMFLTSDMMLVSKADLLPYVPFSVEAVTKDAREVNHEIEVLQISSTTGEGIDEWCNWLLEKVKQKKG
>NC_015844.1|WP_013993521.1|2530056_2530404_-|hydrogenase-maturation-nickel-metallochaperone-HypA
MHETSIVNSIMRTLEQEFEREKLNKMKAIHLKVGVLSNIEPRLLHNAYSAYHLSNPGYHHVELHIESTPLKIQCEVCNHITDVQNYRFICENCDRPSKNVIQGEEMLIHKVEFED
>NC_015844.1|WP_013993522.1|2530403_2531885_-|hypothetical-protein
MLTILTTTDAFQKVQDAIGSVDRLDELVTVTEAPENIGDTKMLTADTDTLSVTLDWYDLEPPYVFPEIPFTPKNLLALVFYKLGNHQKAFEFVSEASPLYHHLLIATHLQFGYEISTNMIDFCYNTSAHNSAIINYYGAVTPSQGHAELKKGFIEALTKAENDEVKVFTAKHYLNLLLDAGELKEAKALVEEQLKIAVSDDAKNAMNSHLAGILMAQLQMPHDPEKLNEVHELQLGCIAYFEEKGLSVQAGMLLVDAAEIANFKKDFIASKELINRAIQYFRKEDIPEFLGEAMYKKAILLYTWSKNGNPQYYKASINAFQDVLKVFKRDTHPQKFADVHHNLALIYSEIPVSSEEKPMWTAFCASSFKEVLAFYTKDKYPYEHAMASHNYATALMHFPPAKIHDNLEKAAGLFNEALEIRTASEYPFERALTLLNQLELGWLTHNENSSEELKKYEEMKAKAEEIKTLVDDKNLIAQADQHLEELEKVKSLI
>NC_015844.1|WP_013993523.1|2531859_2532117_-|hypothetical-protein
MTKQNNNWLIDAEVQYKVTPVKGRWEVSLIFINTKDPKQVLIQTIGDYRTERLAEIYGRNMMLTAAKDPRGTQKVDKDAYDINDN
>NC_015844.1|WP_013993524.1|2532113_2532434_-|hypothetical-protein
MNPRISLKTSHIYLDHELIAPIFGETQYAYVTYVREQGTILITPVTSQWFVKMYKPTQFLLKTRNLKGDKTLAVRELLIDNDLDMTDRELDYEIIEKTRLIKVAVR
>NC_015844.1|WP_013993525.1|2532430_2532910_-|hydrogenase-maturation-protease
MKTAIMGFGNPVRSDDAVGIYVIEELRKKLPETEDISIFDMGTAAFEVLFGLKGHDRIILVDAVLNSNEPVGTLFKVPAEEVMKAPQDDPMVFLHGMKWDQALSYTKKIMQDEYPEDIQVYLVAIENTKLEVDLSDEVKDAGDKIVQHILEDLKLPIPS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2054658 : 2061591

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013993095.1\|2054658_2055681_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.9e-77	46.9
WP_013993096.1\|2055684_2056539_+	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	1.1e-98	63.7
WP_013993097.1\|2056557_2057103_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	7.7e-37	43.8
WP_013993098.1\|2057099_2057876_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.3e-37	36.4
WP_013993099.1\|2057894_2058476_+	N-acetyltransferase	NA	NA	NA	NA
WP_013993100.1\|2058496_2059594_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	8.2e-30	30.3
WP_013993101.1\|2059590_2060529_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013993102.1\|2060541_2061591_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A0N9R0B2	Chrysochromulina_ericina_virus	3.0e-53	36.4

DBSCAN-SWA_2

3505639 : 3572573

uncultured_Mediterranean_phage(16.67%)

transposase,tRNA,integrase

attL 3556295:3556311|attR 3583123:3583139

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046287948.1\|3505639_3506770_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.2e-71	40.0
WP_013994359.1\|3506769_3507852_+	YjgP/YjgQ family permease	NA	NA	NA	NA
WP_013994360.1\|3507872_3508766_+	DMT family transporter	NA	NA	NA	NA
WP_013994361.1\|3508814_3509768_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_013994362.1\|3509923_3511471_+	replicative DNA helicase	S0A403	Cellulophaga_phage	1.0e-102	47.0
WP_013994363.1\|3511579_3512845_+	hypothetical protein	NA	NA	NA	NA
WP_013994364.1\|3512888_3515084_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_013994365.1\|3515089_3515587_-	DUF2271 domain-containing protein	NA	NA	NA	NA
WP_158499729.1\|3515593_3517105_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_013994367.1\|3517187_3518567_-	hypothetical protein	NA	NA	NA	NA
WP_013994368.1\|3518587_3521002_-	carboxypeptidase-like regulatory domain-containing protein	NA	NA	NA	NA
WP_013994369.1\|3521127_3522108_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013994370.1\|3522231_3524178_+	hypothetical protein	NA	NA	NA	NA
WP_013994371.1\|3524174_3524579_+	hypothetical protein	NA	NA	NA	NA
WP_046287507.1\|3524594_3525395_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_013994373.1\|3525488_3525911_+	YjbQ family protein	NA	NA	NA	NA
WP_013994374.1\|3525964_3526309_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_013994375.1\|3526397_3526595_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_084724353.1\|3526699_3527254_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.3e-11	36.0
WP_013994377.1\|3527286_3529233_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	4.5e-132	39.1
WP_013994379.1\|3535518_3537405_+	DUF1080 domain-containing protein	NA	NA	NA	NA
WP_013994380.1\|3537417_3539367_+	hypothetical protein	NA	NA	NA	NA
WP_013994381.1\|3539402_3540035_+	hemolysin III family protein	NA	NA	NA	NA
WP_013994382.1\|3540078_3542310_+	c-type cytochrome	NA	NA	NA	NA
WP_013994383.1\|3542314_3543130_-	hypothetical protein	NA	NA	NA	NA
WP_013994384.1\|3543164_3543515_-	hypothetical protein	NA	NA	NA	NA
WP_158499766.1\|3543527_3544001_+	TonB-dependent receptor	NA	NA	NA	NA
WP_013994386.1\|3544334_3545720_-	hypothetical protein	NA	NA	NA	NA
WP_013994388.1\|3546807_3547320_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013994389.1\|3547855_3548536_+	hypothetical protein	NA	NA	NA	NA
WP_013994390.1\|3548597_3550499_-	sensor histidine kinase	NA	NA	NA	NA
WP_013994392.1\|3551163_3551826_-	response regulator transcription factor	NA	NA	NA	NA
WP_158499730.1\|3551917_3552151_-\|transposase	transposase	NA	NA	NA	NA
WP_158499731.1\|3552762_3552915_-	hypothetical protein	NA	NA	NA	NA
WP_148560711.1\|3552893_3553037_-\|transposase	transposase	NA	NA	NA	NA
WP_013994397.1\|3553450_3556945_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
3556295:3556311	attL	NA	NA	NA	NA
WP_158499732.1\|3556961_3558446_+	SusD/RagB family nutrient-binding outer membrane lipoprotein	NA	NA	NA	NA
WP_013994399.1\|3558507_3559830_+	chitin-binding lectin	NA	NA	NA	NA
WP_084724355.1\|3559917_3560433_+	response regulator	NA	NA	NA	NA
WP_084724356.1\|3560374_3560608_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_013994401.1\|3561434_3562847_+	DnaJ domain-containing protein	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	2.1e-06	61.0
WP_148560712.1\|3563646_3564489_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013994406.1\|3565009_3565423_-	hypothetical protein	NA	NA	NA	NA
WP_013994407.1\|3565734_3567234_+	hypothetical protein	NA	NA	NA	NA
WP_013994408.1\|3567516_3567657_+	hypothetical protein	NA	NA	NA	NA
WP_158499733.1\|3567737_3568079_-\|transposase	transposase	NA	NA	NA	NA
WP_158499734.1\|3568024_3568444_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0P0I4A4	Acinetobacter_phage	5.9e-05	31.4
WP_013994410.1\|3568530_3568656_-\|transposase	transposase	NA	NA	NA	NA
WP_013994411.1\|3568757_3569387_-	hypothetical protein	NA	NA	NA	NA
WP_158499735.1\|3569558_3569711_-	hypothetical protein	NA	NA	NA	NA
WP_148560714.1\|3569727_3570060_-	hypothetical protein	NA	NA	NA	NA
WP_013994413.1\|3570256_3570679_-	PH domain-containing protein	NA	NA	NA	NA
WP_158499736.1\|3571009_3571147_-	hypothetical protein	NA	NA	NA	NA
WP_084724358.1\|3572231_3572573_+\|transposase	transposase	NA	NA	NA	NA
3583123:3583139	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3887647 : 3924727

uncultured_Caudovirales_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013994711.1\|3887647_3888205_-\|transposase	transposase	NA	NA	NA	NA
WP_013994712.1\|3888323_3888752_-	hypothetical protein	NA	NA	NA	NA
WP_148560724.1\|3888764_3889253_-	hypothetical protein	A0A2H4JHK7	uncultured_Caudovirales_phage	8.4e-11	50.0
WP_013994714.1\|3889634_3889877_-	hypothetical protein	NA	NA	NA	NA
WP_013994715.1\|3889867_3890071_-	hypothetical protein	NA	NA	NA	NA
WP_013994716.1\|3890313_3890859_-\|transposase	transposase	NA	NA	NA	NA
WP_013994712.1\|3890989_3891418_-	hypothetical protein	NA	NA	NA	NA
WP_013994717.1\|3891430_3895492_-	RHS domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	3.5e-17	31.0
WP_013994718.1\|3895504_3896842_-	hypothetical protein	NA	NA	NA	NA
WP_013994719.1\|3896847_3898629_-	type IV secretion protein Rhs	NA	NA	NA	NA
WP_046287546.1\|3899266_3899683_-	hypothetical protein	NA	NA	NA	NA
WP_123772418.1\|3899675_3900104_-	hypothetical protein	NA	NA	NA	NA
WP_013994722.1\|3900415_3900571_-	hypothetical protein	NA	NA	NA	NA
WP_123772417.1\|3901024_3901798_-	hypothetical protein	NA	NA	NA	NA
WP_013994724.1\|3902303_3902888_-	hypothetical protein	NA	NA	NA	NA
WP_013994725.1\|3902955_3903393_-	hypothetical protein	NA	NA	NA	NA
WP_123772416.1\|3903595_3903826_+	hypothetical protein	NA	NA	NA	NA
WP_013994728.1\|3905343_3906432_-	type I restriction enzyme HsdR N-terminal domain-containing protein	NA	NA	NA	NA
WP_013994729.1\|3906773_3907025_+	hypothetical protein	NA	NA	NA	NA
WP_013994730.1\|3907301_3907937_-	hypothetical protein	NA	NA	NA	NA
WP_013994732.1\|3908236_3909055_-	DKNYY domain-containing protein	NA	NA	NA	NA
WP_013994733.1\|3909301_3910057_-	hypothetical protein	NA	NA	NA	NA
WP_148560751.1\|3910479_3910872_+\|transposase	transposase	NA	NA	NA	NA
WP_013994735.1\|3911130_3911679_-	hypothetical protein	NA	NA	NA	NA
WP_013994410.1\|3912210_3912336_-\|transposase	transposase	NA	NA	NA	NA
WP_013994738.1\|3912460_3913291_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013994739.1\|3913494_3914115_+	lipoprotein	NA	NA	NA	NA
WP_013994741.1\|3914785_3915766_+	kelch-like protein	NA	NA	NA	NA
WP_013994744.1\|3916036_3916963_+	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA
WP_013994745.1\|3917265_3918324_-	hypothetical protein	NA	NA	NA	NA
WP_046287994.1\|3918416_3919358_-	polyketide cyclase	NA	NA	NA	NA
WP_148560752.1\|3919805_3920198_+\|transposase	transposase	NA	NA	NA	NA
WP_013994749.1\|3920289_3921312_-	hypothetical protein	NA	NA	NA	NA
WP_013994750.1\|3921293_3922853_-	AAA family ATPase	NA	NA	NA	NA
WP_013994527.1\|3923146_3924727_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.7e-23	22.5

DBSCAN-SWA_4

4434732 : 4443560

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013995105.1\|4434732_4436175_-	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	2.9e-67	38.2
WP_013995106.1\|4436291_4437308_-	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	3.4e-38	30.2
WP_046288055.1\|4437304_4438702_-	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	7.0e-58	33.9
WP_046288056.1\|4439104_4440091_+	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	2.4e-73	45.7
WP_046287579.1\|4440538_4441624_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	5.1e-16	23.0
WP_013995111.1\|4441628_4443560_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.4e-35	33.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage