CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007523	Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2011K-0870 chromosome, complete genome	3 crisprs	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	0	26	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007523_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007523_1

3570385-3570494

Orphan

Consensus_repeat	Method
TTAAAAAAAGGTGGTACAGGGTGGGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007523_1

>merge|NZ_CP007523|1|3570385-3570494|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACAAGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGATTAAAAAAAAGTGGTACAGGGTGGGACA

>NZ_CP007523|1|1|3570385-3570494|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACA	AGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGA
TTAAAAAAAAGTGGTACAGGGTGGGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007523.1\|WP_000701821.1\|3568046_3568262_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP007523.1\|WP_000956166.1\|3559863_3560064_-\|DUF2724-domain-containing-protein	unknown	unknown	gnl\|CDD\|371288
NZ_CP007523.1\|WP_001520307.1\|3568297_3570367_+\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
NZ_CP007523.1\|WP_000460861.1\|3560071_3560581_-\|phage-regulatory-CII-family-protein	unknown	unknown	gnl\|CDD\|369127
NZ_CP007523.1\|WP_000749979.1\|3573620_3573905_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
NZ_CP007523.1\|WP_001033832.1\|3575897_3576911_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP007523.1\|WP_000480483.1\|3574017_3574539_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
NZ_CP007523.1\|WP_001536726.1\|3561611_3562637_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|222904
NZ_CP007523.1\|WP_000776032.1\|3578481_3579117_-\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
NZ_CP007523.1\|WP_010989064.1\|3572197_3573016_+\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NZ_CP007523.1\|WP_001161781.1\|3566768_3567596_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007523.1\|WP_000248794.1\|3565240_3566434_+\|SEC-C-domain-containing-protein	unknown	unknown	gnl\|CDD\|376935
NZ_CP007523.1\|WP_001098984.1\|3574906_3575887_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
NZ_CP007523.1\|WP_000973738.1\|3574535_3574910_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226254
NZ_CP007523.1\|WP_000616878.1\|3560975_3561608_+\|phage-repressor-protein-CI	unknown	unknown	gnl\|CDD\|374550
NZ_CP007523.1\|WP_000889012.1\|3577205_3578408_+\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|379021
NZ_CP007523.1\|WP_001520831.1\|3570869_3572153_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226459
NZ_CP007523.1\|WP_010989065.1\|3573169_3573526_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP007523.1\|WP_000102102.1\|3560613_3560856_-\|Rha-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP007523.1\|WP_010989063.1\|3564257_3564851_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007523.1\|WP_000701821.1\|3568046_3568262_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
NZ_CP007523.1\|WP_000956166.1\|3559863_3560064_-\|DUF2724-domain-containing-protein	gnl\|CDD\|371288	pfam10893, DUF2724, Protein of unknown function (DUF2724). This is a family of proteins with unknown function.	9.43016e-21
NZ_CP007523.1\|WP_001520307.1\|3568297_3570367_+\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
NZ_CP007523.1\|WP_000460861.1\|3560071_3560581_-\|phage-regulatory-CII-family-protein	gnl\|CDD\|369127	pfam06892, Phage_CP76, Phage regulatory protein CII (CP76). This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny.	2.72389e-84
NZ_CP007523.1\|WP_000749979.1\|3573620_3573905_+\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
NZ_CP007523.1\|WP_001033832.1\|3575897_3576911_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.77409e-67
NZ_CP007523.1\|WP_000480483.1\|3574017_3574539_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
NZ_CP007523.1\|WP_001536726.1\|3561611_3562637_+\|site-specific-integrase	gnl\|CDD\|222904	PHA02601, int, integrase; Provisional.	0
NZ_CP007523.1\|WP_000776032.1\|3578481_3579117_-\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	4.14833e-98
NZ_CP007523.1\|WP_010989064.1\|3572197_3573016_+\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.33424e-50
NZ_CP007523.1\|WP_000248794.1\|3565240_3566434_+\|SEC-C-domain-containing-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	3.20348e-07
NZ_CP007523.1\|WP_001098984.1\|3574906_3575887_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
NZ_CP007523.1\|WP_000973738.1\|3574535_3574910_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	5.89598e-59
NZ_CP007523.1\|WP_000616878.1\|3560975_3561608_+\|phage-repressor-protein-CI	gnl\|CDD\|374550	pfam16452, Phage_CI_C, Bacteriophage CI repressor C-terminal domain. The C-terminal domain of the CI repressor functions in oligomer formation.	1.9816e-32
NZ_CP007523.1\|WP_000889012.1\|3577205_3578408_+\|DUF3883-domain-containing-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	6.01438e-16
NZ_CP007523.1\|WP_001520831.1\|3570869_3572153_+\|AAA-family-ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	0
NZ_CP007523.1\|WP_010989065.1\|3573169_3573526_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.55924e-09

>NZ_CP007523.1|WP_001520307.1|3568297_3570367_+|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>NZ_CP007523.1|WP_000701821.1|3568046_3568262_+|AlpA-family-transcriptional-regulator
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>NZ_CP007523.1|WP_001161781.1|3566768_3567596_-|hypothetical-protein
MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>NZ_CP007523.1|WP_000248794.1|3565240_3566434_+|SEC-C-domain-containing-protein
MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCHLDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIADSSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGTDEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAAITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLNDLTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTKAENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSNSEISS
>NZ_CP007523.1|WP_010989063.1|3564257_3564851_+|hypothetical-protein
MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>NZ_CP007523.1|WP_001536726.1|3561611_3562637_+|site-specific-integrase
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
>NZ_CP007523.1|WP_000616878.1|3560975_3561608_+|phage-repressor-protein-CI
MIQVKAGENTGGREAIHRLMAAYDFKSRQQLCDHLGASKSTMANRYLRDSFPAEWVIQCALETGVSLLWLTTGQGEPGSNIDHKKDINFVNSAKVKPLSELVSPEIDKATLNGGLLVEAGKAIIDTSLLPSDSGDLLLVNTAGDSYLVDRSQTPPVNGIWLVDIDGIKSIVKLTRLPGNRLVVHQDESSFECSLDDIEVVGRALKIIKSL
>NZ_CP007523.1|WP_000102102.1|3560613_3560856_-|Rha-family-transcriptional-regulator
MSTDISIRVPKEMATPAEFAEWEGISRGSVYQKIHHGKLAKYMVKKEKNKGRVSLRYLMYKTDQVRESLGHSNFRVIVGQ
>NZ_CP007523.1|WP_000460861.1|3560071_3560581_-|phage-regulatory-CII-family-protein
MFDYKISKHPHFDEACRAFALRHNMSKLAERAGMNVQTLRNKLNPEQPHQLTPPEIWLLTDITEDSTLVDGFLAQIHCLPCVPLNEVAKENLPHYVMSATAEIGRVAAGAVSGDVKTSAGRRDVINSINSVTRLMALTAVSLHARLQANPAMASAVDTVTGLGASFGLI
>NZ_CP007523.1|WP_000956166.1|3559863_3560064_-|DUF2724-domain-containing-protein
MLTKEPSFASLLVKKSPAMHCGHGWIMGKDGKRWHPCRSQDALLAELSTKKQGKPWLLKAMLRLFR
>NZ_CP007523.1|WP_001520831.1|3570869_3572153_+|AAA-family-ATPase
MELRRISVNNLFGILNYDIDLGNSETIIITGPNGYGKTMLLKIIDNILNKNIDFFFDLRFEEIKFELDTILLCIEKQKNKNVAVTVVDYVNDKKRQEVFTLNKNKELDVDYFDEIYNKLLICDNIDSDPILKSYNHEEILNYYKIKKIKLHKEKHHKSDFLDKSIPNAELTFIKAQRIENIKNEKSAIESQANFLLELIKRAAEESAQISQRLDSTFPARLFDSINENISSTSINDRLIGIQRKRELFMKFGIIKSEDTFIPRKFSNATLGKEYSTVLNLYISDALEKLSPYEELFEKINLFVNLLNEKMLAFKEIKISNEHGFYFQSDNGERISLSNLSSGEQNQIVIYFDLIFKAKQNSVILIDEPEISLHVAWQKEFLDSIARIQKLNEFSKIIIATHSPQIVNNNWDITYDLFENNNKNMEGQ
>NZ_CP007523.1|WP_010989064.1|3572197_3573016_+|DUF4435-domain-containing-protein
MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>NZ_CP007523.1|WP_010989065.1|3573169_3573526_-|helix-turn-helix-transcriptional-regulator
MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>NZ_CP007523.1|WP_000749979.1|3573620_3573905_+|transcriptional-regulator
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>NZ_CP007523.1|WP_000480483.1|3574017_3574539_+|PTS-glucitol/sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>NZ_CP007523.1|WP_000973738.1|3574535_3574910_+|PTS-glucitol/sorbitol-transporter-subunit-IIA
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>NZ_CP007523.1|WP_001098984.1|3574906_3575887_+|PTS-glucitol/sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>NZ_CP007523.1|WP_001033832.1|3575897_3576911_+|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>NZ_CP007523.1|WP_000889012.1|3577205_3578408_+|DUF3883-domain-containing-protein
MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNALSARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYYGKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQMFKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNWSNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYALNWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAFRFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVVRFDLEEPA
>NZ_CP007523.1|WP_000776032.1|3578481_3579117_-|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH

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Crispr_ID: NZ_CP007523_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007523_2

3761410-3762213

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

12 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP007523_2

>merge|NZ_CP007523|2|3761410-3762213|CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTGATTTTGCTGCGATGTTATAACCAGACGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCACCTCGAAACGGTTTTAAAACACTACCGTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGACCGATGGGGCCAACATCGCCGAACGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTACGTTCGGTAAATGGAAAGCGGCGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTTGCAGACCAATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP007523|2|2|3761410-3761805|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NZ_CP007523|2|1|3761410-3761804|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NZ_CP007523|2|1|3761471-3762213|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGAGTAACGTGCGCTGGAACGCGTC
GGCGCGGGGAACACAATTAAAGCCGAGGG	TGGCACCGCGCCTTATTCGGTTTATCCCCGCT
GGCGCGGGGAACACGCACCTCGAAACGGT	TTTAAAACACTACCGTTTCGGTTTATCCCCGCT
GGCGCGGGGAACACTGGACCGATGGGGCC	AACATCGCCGAACGTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTTACGTTCGGTAAA	TGGAAAGCGGCGAATATCGGTTTATCCCCGCT
GGCGCGGGGAACACGTGGTTGCAGACCAA	TCAGCCCGCCAGCGGTTCGGTTTATCCCCGCT
GGCGCGGGGAACACCAGCACGAAAAATTA	TTTACTGTCGTTGCTCACGGTTTATCCCCGCT
GGCGCGGGGAACAC

>NZ_CP007523|2|2|3761818-3762213|CRT
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP007523|2|3|3761879-3762213|CRISPRCasFinder
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007523.1\|WP_000281486.1\|3763519_3764170_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP007523.1\|WP_001221538.1\|3753276_3754038_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP007523.1\|WP_000085114.1\|3764151_3764898_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP007523.1\|WP_000741650.1\|3755543_3756254_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP007523.1\|WP_000029738.1\|3768105_3770769_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP007523.1\|WP_001145543.1\|3771213_3772167_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP007523.1\|WP_000117946.1\|3765980_3766541_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP007523.1\|WP_000517480.1\|3756272_3756584_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP007523.1\|WP_001173663.1\|3757148_3757754_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP007523.1\|WP_000134246.1\|3754018_3755068_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP007523.1\|WP_001537530.1\|3756774_3757098_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP007523.1\|WP_046338482.1\|3762602_3763523_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP007523.1\|WP_000490481.1\|3760348_3761395_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP007523.1\|WP_000080404.1\|3772254_3772989_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP007523.1\|WP_000372384.1\|3759189_3760098_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP007523.1\|WP_000368584.1\|3766537_3768094_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP007523.1\|WP_001219245.1\|3755064_3755544_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP007523.1\|WP_000206415.1\|3764908_3765967_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP007523.1\|WP_001518648.1\|3762309_3762603_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP007523.1\|WP_001092263.1\|3757740_3759180_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349

Protein	Function_ID	Function_description	E-value
NZ_CP007523.1\|WP_000281486.1\|3763519_3764170_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NZ_CP007523.1\|WP_001221538.1\|3753276_3754038_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP007523.1\|WP_000085114.1\|3764151_3764898_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
NZ_CP007523.1\|WP_000741650.1\|3755543_3756254_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP007523.1\|WP_000029738.1\|3768105_3770769_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP007523.1\|WP_001145543.1\|3771213_3772167_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP007523.1\|WP_000117946.1\|3765980_3766541_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP007523.1\|WP_000517480.1\|3756272_3756584_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP007523.1\|WP_001173663.1\|3757148_3757754_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP007523.1\|WP_000134246.1\|3754018_3755068_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP007523.1\|WP_001537530.1\|3756774_3757098_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP007523.1\|WP_046338482.1\|3762602_3763523_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.86359e-157
NZ_CP007523.1\|WP_000490481.1\|3760348_3761395_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP007523.1\|WP_000080404.1\|3772254_3772989_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP007523.1\|WP_000372384.1\|3759189_3760098_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP007523.1\|WP_000368584.1\|3766537_3768094_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP007523.1\|WP_001219245.1\|3755064_3755544_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP007523.1\|WP_000206415.1\|3764908_3765967_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP007523.1\|WP_001518648.1\|3762309_3762603_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP007523.1\|WP_001092263.1\|3757740_3759180_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0

>NZ_CP007523.1|WP_000490481.1|3760348_3761395_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP007523.1|WP_000372384.1|3759189_3760098_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP007523.1|WP_001092263.1|3757740_3759180_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP007523.1|WP_001173663.1|3757148_3757754_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP007523.1|WP_001537530.1|3756774_3757098_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP007523.1|WP_000517480.1|3756272_3756584_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP007523.1|WP_000741650.1|3755543_3756254_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP007523.1|WP_001219245.1|3755064_3755544_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP007523.1|WP_000134246.1|3754018_3755068_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP007523.1|WP_001221538.1|3753276_3754038_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP007523.1|WP_001518648.1|3762309_3762603_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP007523.1|WP_046338482.1|3762602_3763523_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFELAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP007523.1|WP_000281486.1|3763519_3764170_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NZ_CP007523.1|WP_000085114.1|3764151_3764898_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP007523.1|WP_000206415.1|3764908_3765967_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP007523.1|WP_000117946.1|3765980_3766541_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP007523.1|WP_000368584.1|3766537_3768094_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP007523.1|WP_000029738.1|3768105_3770769_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP007523.1|WP_001145543.1|3771213_3772167_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP007523.1|WP_000080404.1|3772254_3772989_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP007523_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007523_3

3778345-3780448

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

34 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP007523_3

>merge|NZ_CP007523|3|3778345-3780448|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCCGTTCTGCCTCTTCGCACTCTCGATCAACGGTTTATCCCCGCTGGCGCGGGGAACACTGCGTAATGGGCTACCTGAACTTCACATATCCCGGTTTATCCCCGCTAGCGCGGGGAACATATTAAGCGCGCAAAGTTTGGGTTAATTGGACACGGTTTATCCCCGCTGGCGCGGGGAACACCGTATTCGTCACACAGCCCCGTCCAGAAATGACGGTTTATCCCCGCTGGCACGGGGAACACTAACGAACTGAATAAAATGTCAGAAAGTGACGCGGCTTATCCCCGCTGGCGCGGGGAACACGCAGCTTAGCGACGAAATTAAAACCGAACTCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCAGTGACTACAGAAGCGTCGCTATCGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCGCCTTCGGCACTGACGTCACCGTCAACGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCGTTCGTTGCCGGTATAGACCAGCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCATGTCAAACGCCATCAGCGTTCCGGCATCGGTTTATCCCCGCTAGCGCGGGGAACACAATCGCCAGCCTCGGAAATATTCCATCCTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAAAGCCACACCATTTTTTATTGACCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGACGTGGACGAGGAGTTACTCAACCGCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCGCCACATGGCCCACCGGCACCACCCGATCCGGTTTATCCCCGCTGGCGCGGGGAACACAAATGACCAAATCAGAAATCTTCACCAAAGCCCGGTTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAAGTCAAACGGTTCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACGAGTCCGGGGGTTATATAGTTATTTAATGAGCCGGTTTATCCCCGCTGGCGCGGGGAACACTTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACTCAACTGTCAGTTCGTCGTTAGCCAGTAATTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGAAAACGCATGGAATCCGGTATAAACAGTCCGGTTTATCCCCGCTGGCGCGGGGAACACGATGTAACTGATAGCGAAATATATTGGGATAACGGTTTATCCCCGCTGGCGCGGGGAACACGAAACGTAAACAGGGTAAGATACAACTCTGCACGGTTTATCCCCGCTGGCGCGGGGAACACTGTAAAGGGTGGTCTGGAAGGGGATCGGCAAACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP007523|3|4|3778345-3780448|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP007523|3|3|3778345-3780448|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP007523|3|2|3778406-3780448|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007523.1\|WP_000036734.1\|3781551_3782850_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP007523.1\|WP_000226838.1\|3787066_3789301_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP007523.1\|WP_000210927.1\|3774776_3776576_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP007523.1\|WP_000080404.1\|3772254_3772989_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP007523.1\|WP_000368584.1\|3766537_3768094_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP007523.1\|WP_001145543.1\|3771213_3772167_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP007523.1\|WP_000029738.1\|3768105_3770769_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP007523.1\|WP_000108313.1\|3776999_3777362_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP007523.1\|WP_000117946.1\|3765980_3766541_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP007523.1\|WP_000046849.1\|3789352_3790648_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP007523.1\|WP_001199961.1\|3780744_3781416_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP007523.1\|WP_001290660.1\|3773064_3774777_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP007523.1\|WP_000186400.1\|3790705_3793462_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP007523.1\|WP_000210863.1\|3782932_3784570_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP007523.1\|WP_000210449.1\|3784797_3785598_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP007523.1\|WP_000480218.1\|3786626_3786983_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP007523.1\|WP_000706479.1\|3793505_3794648_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP007523.1\|WP_001532579.1\|3786364_3786661_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP007523.1\|WP_001208013.1\|3777449_3778247_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP007523.1\|WP_000206415.1\|3764908_3765967_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP007523.1\|WP_000036734.1\|3781551_3782850_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP007523.1\|WP_000226838.1\|3787066_3789301_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP007523.1\|WP_000210927.1\|3774776_3776576_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP007523.1\|WP_000080404.1\|3772254_3772989_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP007523.1\|WP_000368584.1\|3766537_3768094_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP007523.1\|WP_001145543.1\|3771213_3772167_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP007523.1\|WP_000029738.1\|3768105_3770769_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP007523.1\|WP_000108313.1\|3776999_3777362_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP007523.1\|WP_000117946.1\|3765980_3766541_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP007523.1\|WP_000046849.1\|3789352_3790648_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP007523.1\|WP_001199961.1\|3780744_3781416_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP007523.1\|WP_001290660.1\|3773064_3774777_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP007523.1\|WP_000186400.1\|3790705_3793462_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP007523.1\|WP_000210863.1\|3782932_3784570_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP007523.1\|WP_000210449.1\|3784797_3785598_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP007523.1\|WP_000480218.1\|3786626_3786983_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP007523.1\|WP_000706479.1\|3793505_3794648_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP007523.1\|WP_001532579.1\|3786364_3786661_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
NZ_CP007523.1\|WP_001208013.1\|3777449_3778247_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
NZ_CP007523.1\|WP_000206415.1\|3764908_3765967_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131

>NZ_CP007523.1|WP_001208013.1|3777449_3778247_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP007523.1|WP_000108313.1|3776999_3777362_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP007523.1|WP_000210927.1|3774776_3776576_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP007523.1|WP_001290660.1|3773064_3774777_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP007523.1|WP_000080404.1|3772254_3772989_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP007523.1|WP_001145543.1|3771213_3772167_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP007523.1|WP_000029738.1|3768105_3770769_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP007523.1|WP_000368584.1|3766537_3768094_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP007523.1|WP_000117946.1|3765980_3766541_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP007523.1|WP_000206415.1|3764908_3765967_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP007523.1|WP_001199961.1|3780744_3781416_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP007523.1|WP_000036734.1|3781551_3782850_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP007523.1|WP_000210863.1|3782932_3784570_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP007523.1|WP_000210449.1|3784797_3785598_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP007523.1|WP_001532579.1|3786364_3786661_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP007523.1|WP_000480218.1|3786626_3786983_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP007523.1|WP_000226838.1|3787066_3789301_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP007523.1|WP_000046849.1|3789352_3790648_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP007523.1|WP_000186400.1|3790705_3793462_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP007523.1|WP_000706479.1|3793505_3794648_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007523_2	2.10\|3761985\|32\|NZ_CP007523\|PILER-CR	3761985-3762016	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NZ_CP007523_2	2.10\|3761985\|32\|NZ_CP007523\|PILER-CR	3761985-3762016	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NZ_CP007523_2	2.16\|3761970\|32\|NZ_CP007523\|CRT,CRISPRCasFinder	3761970-3762001	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NZ_CP007523_2	2.16\|3761970\|32\|NZ_CP007523\|CRT,CRISPRCasFinder	3761970-3762001	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NZ_CP007523_3	3.5\|3778618\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3778618-3778649	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
NZ_CP007523_3	3.5\|3778618\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3778618-3778649	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
NZ_CP007523_3	3.11\|3778985\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3778985-3779016	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NZ_CP007523_2	2.10\|3761985\|32\|NZ_CP007523\|PILER-CR	3761985-3762016	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NZ_CP007523_2	2.16\|3761970\|32\|NZ_CP007523\|CRT,CRISPRCasFinder	3761970-3762001	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NZ_CP007523_2	2.7\|3761805\|28\|NZ_CP007523\|PILER-CR	3761805-3761832	28	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337987-338014	5	0.821
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1387347-1387378	5	0.844
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1461559-1461590	5	0.844
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	599340-599371	5	0.844
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	121315-121346	6	0.812
NZ_CP007523_2	2.6\|3761744\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3761744-3761775	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NZ_CP007523_2	2.6\|3761744\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3761744-3761775	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NZ_CP007523_2	2.6\|3761744\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3761744-3761775	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NZ_CP007523_3	3.20\|3779534\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779534-3779565	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NZ_CP007523_3	3.20\|3779534\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779534-3779565	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NZ_CP007523_3	3.20\|3779534\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779534-3779565	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	NZ_CP044078	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence	135155-135186	7	0.781
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	NZ_CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	195902-195933	7	0.781
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	581076-581107	7	0.781
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	122557-122588	7	0.781
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	529537-529568	7	0.781
NZ_CP007523_3	3.25\|3779839\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779839-3779870	32	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	327444-327475	7	0.781
NZ_CP007523_2	2.2\|3761500\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3761500-3761531	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NZ_CP007523_2	2.5\|3761683\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3761683-3761714	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NZ_CP007523_2	2.5\|3761683\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3761683-3761714	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NZ_CP007523_3	3.8\|3778801\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3778801-3778832	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
NZ_CP007523_3	3.8\|3778801\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3778801-3778832	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NZ_CP007523_3	3.13\|3779107\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779107-3779138	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NZ_CP007523_3	3.14\|3779168\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779168-3779199	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
NZ_CP007523_3	3.14\|3779168\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779168-3779199	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
NZ_CP007523_3	3.14\|3779168\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779168-3779199	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
NZ_CP007523_3	3.14\|3779168\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779168-3779199	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
NZ_CP007523_3	3.17\|3779351\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779351-3779382	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
NZ_CP007523_3	3.17\|3779351\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779351-3779382	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
NZ_CP007523_3	3.18\|3779412\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779412-3779443	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
NZ_CP007523_3	3.27\|3779961\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779961-3779992	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
NZ_CP007523_3	3.28\|3780022\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780022-3780053	32	NC_028940	Pectobacterium bacteriophage PM2, complete genome	79087-79118	8	0.75
NZ_CP007523_3	3.10\|3778924\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3778924-3778955	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
NZ_CP007523_3	3.14\|3779168\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779168-3779199	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
NZ_CP007523_3	3.14\|3779168\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779168-3779199	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
NZ_CP007523_3	3.14\|3779168\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779168-3779199	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
NZ_CP007523_3	3.19\|3779473\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779473-3779504	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NZ_CP007523_3	3.20\|3779534\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779534-3779565	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NZ_CP007523_3	3.20\|3779534\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779534-3779565	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NZ_CP007523_3	3.20\|3779534\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779534-3779565	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NZ_CP007523_3	3.21\|3779595\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779595-3779626	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
NZ_CP007523_3	3.21\|3779595\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779595-3779626	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
NZ_CP007523_3	3.24\|3779778\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779778-3779809	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
NZ_CP007523_3	3.24\|3779778\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779778-3779809	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
NZ_CP007523_3	3.24\|3779778\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779778-3779809	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
NZ_CP007523_2	2.1\|3761439\|32\|NZ_CP007523\|CRISPRCasFinder,CRT	3761439-3761470	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NZ_CP007523_2	2.1\|3761439\|32\|NZ_CP007523\|CRISPRCasFinder,CRT	3761439-3761470	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NZ_CP007523_2	2.10\|3761985\|32\|NZ_CP007523\|PILER-CR	3761985-3762016	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NZ_CP007523_2	2.16\|3761970\|32\|NZ_CP007523\|CRT,CRISPRCasFinder	3761970-3762001	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NZ_CP007523_3	3.1\|3778374\|32\|NZ_CP007523\|CRISPRCasFinder,CRT	3778374-3778405	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP007523_3	3.4\|3778557\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3778557-3778588	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
NZ_CP007523_3	3.23\|3779717\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779717-3779748	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
NZ_CP007523_3	3.28\|3780022\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780022-3780053	32	NZ_CP042995	Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence	68697-68728	10	0.688
NZ_CP007523_3	3.28\|3780022\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780022-3780053	32	NZ_CP026129	Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence	43950-43981	10	0.688
NZ_CP007523_3	3.28\|3780022\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780022-3780053	32	NZ_CP038501	Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence	49131-49162	10	0.688
NZ_CP007523_3	3.28\|3780022\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780022-3780053	32	NZ_CP046044	Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence	66631-66662	10	0.688
NZ_CP007523_3	3.28\|3780022\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780022-3780053	32	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	147167-147198	10	0.688
NZ_CP007523_3	3.20\|3779534\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779534-3779565	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NZ_CP007523_3	3.20\|3779534\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3779534-3779565	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656
NZ_CP007523_3	3.34\|3780388\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780388-3780419	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1885546-1885577	11	0.656
NZ_CP007523_3	3.34\|3780388\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780388-3780419	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	56201-56232	11	0.656
NZ_CP007523_3	3.34\|3780388\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780388-3780419	32	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	83399-83430	11	0.656
NZ_CP007523_3	3.34\|3780388\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780388-3780419	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1487158-1487189	11	0.656
NZ_CP007523_3	3.34\|3780388\|32\|NZ_CP007523\|CRISPRCasFinder,CRT,PILER-CR	3780388-3780419	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	597699-597730	11	0.656

1. spacer 2.10|3761985|32|NZ_CP007523|PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

2. spacer 2.10|3761985|32|NZ_CP007523|PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

3. spacer 2.16|3761970|32|NZ_CP007523|CRT,CRISPRCasFinder matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

4. spacer 2.16|3761970|32|NZ_CP007523|CRT,CRISPRCasFinder matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

5. spacer 3.5|3778618|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

6. spacer 3.5|3778618|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

7. spacer 3.11|3778985|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

8. spacer 2.10|3761985|32|NZ_CP007523|PILER-CR matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

9. spacer 2.16|3761970|32|NZ_CP007523|CRT,CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

10. spacer 2.7|3761805|28|NZ_CP007523|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  *

11. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

12. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

13. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

14. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

15. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

16. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

17. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

18. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

19. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

20. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

21. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

22. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

23. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

24. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

25. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

26. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

27. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

28. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

29. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

30. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

31. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

32. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

33. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

34. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

35. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

36. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.812

--agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
ccaacgc--catggccgacccgcaccacccgacc	Protospacer
  *.***  ******* *** ***********.*

37. spacer 2.6|3761744|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

38. spacer 2.6|3761744|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

39. spacer 2.6|3761744|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

40. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

41. spacer 3.20|3779534|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

42. spacer 3.20|3779534|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

43. spacer 3.20|3779534|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

44. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044078 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

45. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031081 (Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

46. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

47. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

48. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

49. spacer 3.25|3779839|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
agccccacatggcgcaccggcacggcactagc	Protospacer
*** ********* ********* .* * * *

50. spacer 2.2|3761500|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

51. spacer 2.5|3761683|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

52. spacer 2.5|3761683|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

53. spacer 3.8|3778801|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
ggcagaactgaataaaatgtctgatagtgaat	Protospacer
 .  ***************** ** *****

54. spacer 3.8|3778801|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
aaatgaactgaatacaatgtcagacacgcgcg	Protospacer
 **.********** ********* *   .**

55. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

56. spacer 3.13|3779107|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

57. spacer 3.14|3779168|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************

58. spacer 3.14|3779168|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

59. spacer 3.14|3779168|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

60. spacer 3.14|3779168|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** *******

61. spacer 3.17|3779351|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

62. spacer 3.17|3779351|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

63. spacer 3.18|3779412|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgccagcctcggaaatattccatcctccg	CRISPR spacer
ggttgccagccccggaagtattccatctccca	Protospacer
..*.*******.*****.*********..**.

64. spacer 3.27|3779961|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taatggccacagtaagtcaaacggttctggaa	CRISPR spacer
cggtggccacagtaaggcacacggttcggcag	Protospacer
...************* ** ******* * *.

65. spacer 3.28|3780022|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 8, identity: 0.75

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
gctctcgtgtgttatatagttatttaatgata	Protospacer
*  ..** * ********************

66. spacer 3.10|3778924|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccagtgactacagaagcgtcgctatcgggg	CRISPR spacer
cacgcctgactaccgaagtgtcgctatcggac	Protospacer
..*   ******* ****.***********.

67. spacer 3.14|3779168|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

68. spacer 3.14|3779168|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

69. spacer 3.14|3779168|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

70. spacer 3.19|3779473|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

71. spacer 3.20|3779534|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

72. spacer 3.20|3779534|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

73. spacer 3.20|3779534|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

74. spacer 3.21|3779595|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

75. spacer 3.21|3779595|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

76. spacer 3.24|3779778|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
gttcagtggacgaggagttcctcacccgcacc	Protospacer
 .   ************** **** ****  *

77. spacer 3.24|3779778|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

78. spacer 3.24|3779778|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

79. spacer 2.1|3761439|32|NZ_CP007523|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

80. spacer 2.1|3761439|32|NZ_CP007523|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

81. spacer 2.10|3761985|32|NZ_CP007523|PILER-CR matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

82. spacer 2.16|3761970|32|NZ_CP007523|CRT,CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

83. spacer 3.1|3778374|32|NZ_CP007523|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

84. spacer 3.4|3778557|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..

85. spacer 3.23|3779717|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

gtggtggcctcaaataaattcgagcgctggag	CRISPR spacer
aaacttgcctcaaataaattcgcgcggtgttc	Protospacer
. . * **************** *** **

86. spacer 3.28|3780022|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042995 (Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

87. spacer 3.28|3780022|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

88. spacer 3.28|3780022|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038501 (Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

89. spacer 3.28|3780022|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046044 (Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

90. spacer 3.28|3780022|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

91. spacer 3.20|3779534|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

92. spacer 3.20|3779534|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

93. spacer 3.34|3780388|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

94. spacer 3.34|3780388|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

95. spacer 3.34|3780388|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccagaaggttggtctggaaggcgatcgagtcg	Protospacer
.  .**** ************ *****.   .

96. spacer 3.34|3780388|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

97. spacer 3.34|3780388|32|NZ_CP007523|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

334119 : 354539

Burkholderia_phage(45.0%)

tail,plate,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000587738.1\|334119_334848_-	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3
WP_010989092.1\|335044_335335_-	membrane protein	NA	NA	NA	NA
WP_000084331.1\|335583_336039_-	hypothetical protein	NA	NA	NA	NA
WP_001526208.1\|336035_336641_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000368196.1\|336645_338391_-\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
WP_000359500.1\|338393_339026_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_000951736.1\|339018_340134_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
WP_001093501.1\|340124_340484_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001095011.1\|340647_342195_-	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
WP_000703632.1\|342194_343124_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	8.8e-150	83.8
WP_000593182.1\|343120_343483_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000679398.1\|343810_344533_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
WP_000818154.1\|344542_345586_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_001269716.1\|345573_345783_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271423.1\|345782_346736_-	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262499.1\|346735_349090_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
WP_001185654.1\|349186_349315_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003642.1\|349274_349592_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907494.1\|349643_350168_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_000729852.1\|350167_351595_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000875314.1\|351584_351782_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449433.1\|351778_352234_-	Gp37 family protein	NA	NA	NA	NA
WP_000777266.1\|352393_352708_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_001270441.1\|352720_353326_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_001226442.1\|353328_353616_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_000615248.1\|354191_354539_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

DBSCAN-SWA_2

1018129 : 1083461

uncultured_Mediterranean_phage(10.0%)

plate,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000753958.1\|1018129_1019557_+\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	4.2e-26	29.2
WP_000929420.1\|1019709_1020867_+	DNA-binding transcriptional regulator CdaR	NA	NA	NA	NA
WP_000272193.1\|1020955_1021342_-	DUF3461 family protein	NA	NA	NA	NA
WP_000017194.1\|1021588_1022890_+	MHS family MFS transporter	NA	NA	NA	NA
WP_001186673.1\|1022926_1023751_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_001094519.1\|1023780_1026453_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_001018214.1\|1026689_1027484_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_000246886.1\|1027934_1028660_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_000808106.1\|1028917_1029769_+	elongation factor Ts	NA	NA	NA	NA
WP_000224567.1\|1029913_1030639_+	UMP kinase	NA	NA	NA	NA
WP_000622423.1\|1030785_1031343_+	ribosome recycling factor	NA	NA	NA	NA
WP_000811905.1\|1031483_1032680_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_000947413.1\|1032992_1033751_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	1.9e-25	42.2
WP_000922422.1\|1033763_1034621_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_000949017.1\|1034632_1035985_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240935.1\|1036016_1038431_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758966.1\|1038553_1039039_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139265.1\|1039042_1040068_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210741.1\|1040173_1040629_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565950.1\|1040632_1041421_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000741212.1\|1041420_1042569_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569412.1\|1042565_1043162_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.5e-25	39.3
WP_001294826.1\|1043185_1046668_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000055753.1\|1046680_1047640_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_000502119.1\|1047834_1048293_+\|transposase	IS200/IS605-like element IS200F family transposase	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
WP_000524168.1\|1048531_1050295_+	chitinase	NA	NA	NA	NA
WP_001021054.1\|1050370_1052512_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901088.1\|1052567_1052957_+	VOC family protein	NA	NA	NA	NA
WP_000210056.1\|1053019_1054312_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062330.1\|1054395_1054656_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_001518678.1\|1054642_1054843_-	YaeP family protein	NA	NA	NA	NA
WP_001185319.1\|1055040_1055586_+	YaeQ family protein	NA	NA	NA	NA
WP_000560527.1\|1055582_1056005_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000252573.1\|1056036_1056738_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_001260683.1\|1056811_1058530_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000093986.1\|1058640_1059348_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202315.1\|1059344_1059749_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874215.1\|1059867_1060683_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001287486.1\|1060721_1061375_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000594021.1\|1061367_1062399_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	5.5e-36	40.2
WP_001051726.1\|1062588_1063155_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000154871.1\|1069413_1070217_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.1e-38	35.4
WP_000648534.1\|1070237_1071152_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001127538.1\|1071256_1072432_+	MFS transporter	NA	NA	NA	NA
WP_001230968.1\|1072563_1073364_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000207224.1\|1073441_1074212_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644706.1\|1074267_1075635_-	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	1.4e-10	33.0
WP_001052775.1\|1075706_1076462_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000801238.1\|1076496_1077219_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917872.1\|1077215_1077683_-	ribonuclease HI	J9Q745	Salmonella_phage	4.7e-51	58.9
WP_001670675.1\|1077746_1078478_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.4e-39	39.9
WP_000367626.1\|1079009_1080065_-	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_000145244.1\|1080075_1081071_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000371508.1\|1081067_1082951_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000108007.1\|1082966_1083461_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

1750071 : 1758803

Dickeya_phage(14.29%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201751.1\|1750071_1751190_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125877.1\|1751186_1753133_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|1753262_1753484_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|1753807_1754128_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934063.1\|1754158_1756435_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000502119.1\|1756626_1757085_+\|transposase	IS200/IS605-like element IS200F family transposase	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
WP_085983316.1\|1757547_1758803_-\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9

DBSCAN-SWA_4

1808866 : 1907674

102

Salmonella_phage(42.11%)

tail,holin,protease,portal,lysis,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154025.1\|1808866_1809670_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|1809662_1810985_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060025.1\|1810965_1811670_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572724.1\|1811669_1816136_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_000925872.1\|1816480_1818322_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|1818581_1819130_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|1819157_1819805_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000462653.1\|1819866_1821057_-	aspartate transaminase	NA	NA	NA	NA
WP_000977713.1\|1821241_1822333_-	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
WP_000117870.1\|1822939_1824340_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000762342.1\|1824540_1825002_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544849.1\|1825318_1826533_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893207.1\|1826777_1828214_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191399.1\|1828291_1829494_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001262306.1\|1829688_1830981_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000065276.1\|1831025_1831274_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1831314_1831554_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001539618.1\|1831596_1832754_-	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_000017133.1\|1832716_1835602_-	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	97.3
WP_001668146.1\|1835728_1836028_-	hypothetical protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
WP_000917564.1\|1836049_1836208_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_077905303.1\|1836200_1836461_-	hypothetical protein	NA	NA	NA	NA
WP_001038966.1\|1836510_1836921_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_000370145.1\|1837040_1837280_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001574095.1\|1837245_1837620_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000062941.1\|1837704_1838688_+	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_000800010.1\|1838690_1839440_+	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000113629.1\|1839450_1839798_+	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000065108.1\|1839794_1840106_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_014343823.1\|1840183_1840474_+	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|1840765_1840999_+	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_000807548.1\|1841110_1841332_+	hypothetical protein	NA	NA	NA	NA
WP_000929805.1\|1841414_1842017_+	DUF1367 family protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
WP_001096552.1\|1842225_1842837_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
WP_001617856.1\|1842833_1842980_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047631.1\|1842969_1843767_+	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
WP_010989004.1\|1843833_1844151_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|1844324_1844450_+	hypothetical protein	NA	NA	NA	NA
WP_000798705.1\|1844585_1845035_-	hypothetical protein	NA	NA	NA	NA
WP_001141973.1\|1845395_1846082_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
WP_001574216.1\|1846357_1846687_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984586.1\|1846670_1847123_+	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001541990.1\|1847140_1847620_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000371784.1\|1847827_1848361_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_000989241.1\|1848317_1850456_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
WP_000196190.1\|1850452_1850659_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_001009207.1\|1850655_1852203_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	2.8e-177	64.3
WP_010989008.1\|1852126_1854208_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_001107908.1\|1854298_1854622_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_000774239.1\|1854614_1854914_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_000453194.1\|1854894_1855461_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
WP_000196702.1\|1855457_1855859_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
WP_000132756.1\|1855870_1856620_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000478859.1\|1856665_1857064_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_010989009.1\|1857060_1857390_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_077905305.1\|1857469_1860457_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	4.8e-266	62.1
WP_000978296.1\|1860453_1860786_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
WP_000725267.1\|1860884_1861382_+	Ail/Lom family outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000877926.1\|1861498_1862032_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152415.1\|1862121_1862817_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000606351.1\|1862826_1863564_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_000246065.1\|1863461_1864166_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_001541992.1\|1864237_1866685_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	68.0
WP_001541993.1\|1866711_1867587_+	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	1.1e-48	77.1
WP_000178849.1\|1867625_1867868_+	hypothetical protein	NA	NA	NA	NA
WP_001144679.1\|1867921_1870360_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
WP_000143167.1\|1870359_1870941_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001533476.1\|1871416_1872385_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
WP_000334547.1\|1873032_1873659_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_010989011.1\|1873727_1874027_-	hypothetical protein	NA	NA	NA	NA
WP_001525490.1\|1874011_1874698_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|1874968_1875160_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000193784.1\|1875586_1878199_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000291723.1\|1878406_1879417_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001220671.1\|1879582_1880125_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224069.1\|1880121_1881231_-	YcbX family protein	NA	NA	NA	NA
WP_001086485.1\|1881329_1883438_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|1883450_1885358_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_000333152.1\|1885372_1886626_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433414.1\|1886630_1888271_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|1888267_1888831_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1889086_1889254_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1889353_1889872_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156454.1\|1889940_1891701_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|1891886_1892339_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001674965.1\|1892410_1893463_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|1893819_1894329_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202375.1\|1894545_1895151_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950880.1\|1895137_1897291_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1897309_1897756_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420505.1\|1897879_1899934_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_000424187.1\|1899969_1900428_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847719.1\|1900522_1901185_-	DUF2057 family protein	NA	NA	NA	NA
WP_001537782.1\|1901358_1901772_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1901816_1902134_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140480.1\|1902191_1903403_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859419.1\|1903617_1904166_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548082.1\|1904191_1904971_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000072884.1\|1905019_1905301_+	acylphosphatase	NA	NA	NA	NA
WP_000904446.1\|1905297_1905627_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374050.1\|1905713_1906373_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
WP_000938191.1\|1906993_1907674_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6

DBSCAN-SWA_5

2695649 : 2702458

Salmonella_phage(33.33%)

tail,integrase

attL 2690512:2690534|attR 2700227:2700249

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2690512:2690534	attL	NA	NA	NA	NA
WP_000275418.1\|2695649_2696531_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
WP_001521334.1\|2697003_2697192_+	hypothetical protein	NA	NA	NA	NA
WP_000789530.1\|2697256_2697424_+	lytic enzyme	NA	NA	NA	NA
WP_001050882.1\|2697680_2698214_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
WP_001013467.1\|2698267_2698498_-	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_010989030.1\|2698687_2699182_+	hypothetical protein	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
WP_176731523.1\|2699253_2700096_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.3e-71	50.9
WP_000722368.1\|2700469_2700823_-	YebY family protein	NA	NA	NA	NA
2700227:2700249	attR	NA	NA	NA	NA
WP_000979702.1\|2700839_2701715_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000168393.1\|2701715_2702090_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000856224.1\|2702227_2702458_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3

DBSCAN-SWA_6

2806502 : 2813756

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157322.1\|2806502_2807933_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377041.1\|2808006_2808702_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107430.1\|2808793_2809093_-	membrane protein	NA	NA	NA	NA
WP_001080680.1\|2809742_2810939_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
WP_024131109.1\|2811199_2811388_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2811398_2811611_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457662.1\|2812065_2813334_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.2e-227	92.2
WP_000394196.1\|2813336_2813756_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_7

2903099 : 2913605

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2903099_2904413_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565905.1\|2904439_2905519_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
WP_000648784.1\|2905523_2906297_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018226.1\|2906293_2907286_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973708.1\|2907291_2907843_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
WP_000857529.1\|2907843_2908722_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
WP_001023662.1\|2908769_2909669_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000697840.1\|2909668_2910754_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_000981469.1\|2911130_2912024_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111841.1\|2912201_2913605_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1

DBSCAN-SWA_8

2981913 : 2991084

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195332.1\|2981913_2983947_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2984187_2984646_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197952.1\|2984817_2985348_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2985404_2985872_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2985918_2986638_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272845.1\|2986634_2988320_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_001240418.1\|2988542_2989274_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2989333_2989441_+	protein YohO	NA	NA	NA	NA
WP_000824855.1\|2989421_2990153_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2990136_2991084_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_9

3010491 : 3076878

Salmonella_phage(28.57%)

tail,lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000989296.1\|3010491_3011187_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_000553526.1\|3011340_3012225_+	cytidine deaminase	NA	NA	NA	NA
WP_000920081.1\|3012401_3013121_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_000605187.1\|3013117_3013363_+	DUF2542 family protein	NA	NA	NA	NA
WP_001136409.1\|3013567_3014809_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_000956095.1\|3014802_3016038_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA
WP_001275101.1\|3016112_3017123_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_000535907.1\|3017138_3018659_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.0e-09	31.9
WP_001036943.1\|3018792_3019791_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_000628631.1\|3020289_3021312_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_001526153.1\|3021461_3022604_-	DUF418 family protein	NA	NA	NA	NA
WP_001139611.1\|3022618_3023287_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	4.1e-56	56.3
WP_000425488.1\|3023616_3024474_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000876817.1\|3024462_3024852_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000443208.1\|3024856_3026224_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_000022915.1\|3026440_3027328_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_000023807.1\|3027360_3028683_+	MFS transporter	NA	NA	NA	NA
WP_000488255.1\|3028726_3030718_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	6.7e-14	37.9
WP_000535000.1\|3031063_3032533_-	lysine-specific permease	NA	NA	NA	NA
WP_000548308.1\|3032722_3033586_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000137961.1\|3033706_3034756_+	YeiH family protein	NA	NA	NA	NA
WP_000873909.1\|3034834_3035692_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	2.2e-22	28.5
WP_000854414.1\|3035756_3037445_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_000091249.1\|3037461_3038400_-	1-phosphofructokinase	NA	NA	NA	NA
WP_000487287.1\|3038399_3039530_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_000551937.1\|3039898_3041080_+	sugar efflux transporter SetB	NA	NA	NA	NA
WP_001213882.1\|3041144_3041810_-	membrane protein	NA	NA	NA	NA
WP_001519564.1\|3041811_3041934_-	membrane protein	NA	NA	NA	NA
WP_010989043.1\|3042321_3042576_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001136822.1\|3042899_3043472_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_000169350.1\|3043684_3044671_+	GTP-binding protein	NA	NA	NA	NA
WP_000178095.1\|3044700_3045420_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_000241015.1\|3045833_3046406_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	8.1e-13	38.9
WP_000957746.1\|3046731_3048288_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_000561747.1\|3048394_3050200_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000501623.1\|3050209_3051304_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_001137764.1\|3051303_3052329_+	ABC transporter permease	NA	NA	NA	NA
WP_000203622.1\|3052330_3053920_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	8.5e-20	32.5
WP_001094639.1\|3053923_3054268_-	hypothetical protein	NA	NA	NA	NA
WP_000213347.1\|3054658_3055849_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.4e-19	22.2
WP_001234836.1\|3055876_3056572_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_000578121.1\|3056723_3058484_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	1.9e-100	41.6
WP_000494192.1\|3058608_3058893_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_000033440.1\|3059001_3059622_-	hypothetical protein	NA	NA	NA	NA
WP_000050806.1\|3059649_3060657_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	4.5e-83	48.3
WP_001135904.1\|3060836_3061064_+	YejL family protein	NA	NA	NA	NA
WP_000256150.1\|3061095_3062856_+	cardiolipin transport protein PbgA	NA	NA	NA	NA
WP_000806401.1\|3063136_3063640_-	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3
WP_000884778.1\|3063667_3063958_+	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_000639473.1\|3064296_3066126_+	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
WP_000022213.1\|3066179_3066623_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
WP_001215679.1\|3067000_3067528_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
WP_000554739.1\|3067530_3068772_-	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
WP_001120499.1\|3069364_3069694_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
WP_000894640.1\|3069990_3071322_+	AAA family ATPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
WP_010989045.1\|3071350_3071719_-	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
WP_001202279.1\|3071733_3072723_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
WP_001115840.1\|3073051_3075418_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
WP_001113462.1\|3075586_3075790_-\|tail	tail protein	NA	NA	NA	NA
WP_000624225.1\|3076086_3076878_-\|tail	tail fiber protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6

DBSCAN-SWA_10

3467106 : 3590868

111

Salmonella_phage(75.0%)

tail,head,portal,lysis,tRNA,integrase,terminase,plate,capsid

attL 3465987:3466002|attR 3594787:3594802

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3465987:3466002	attL	NA	NA	NA	NA
WP_000083343.1\|3467106_3467844_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219174.1\|3467974_3469309_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_001526875.1\|3469326_3470226_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000188414.1\|3470328_3470916_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627811.1\|3470977_3471361_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000179978.1\|3471679_3472369_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000997368.1\|3472484_3473522_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098732.1\|3473725_3474145_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000183639.1\|3474217_3474898_+\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_000082639.1\|3474951_3477612_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949286.1\|3477726_3479082_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001264473.1\|3479126_3479450_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000807809.1\|3479446_3480748_-	MFS transporter	Q6JIH2	Burkholderia_virus	6.9e-44	30.4
WP_000985653.1\|3480851_3481307_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_001235094.1\|3487187_3489761_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
WP_000992639.1\|3489890_3490622_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|3490618_3491599_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197660.1\|3491730_3492468_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_046338476.1\|3492739_3493078_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|3493181_3493229_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_000200080.1\|3493328_3494489_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210995.1\|3494449_3495358_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225191.1\|3495415_3496537_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|3496546_3497617_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212379.1\|3498056_3498575_+	YfiR family protein	NA	NA	NA	NA
WP_001030985.1\|3498567_3499788_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_000065257.1\|3499944_3500292_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469804.1\|3500332_3501100_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|3501144_3501693_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|3501711_3501960_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|3502273_3503635_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|3503800_3504592_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|3504611_3505898_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001287923.1\|3506018_3506624_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|3506658_3507249_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059155.1\|3507371_3508250_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880965.1\|3508335_3509997_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|3510145_3510484_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|3510649_3510940_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|3510929_3511406_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|3511555_3512038_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_001237667.1\|3512651_3524126_+	biofilm-associated protein BapA	NA	NA	NA	NA
WP_000533858.1\|3524190_3525600_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_000196159.1\|3525596_3527777_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_010989057.1\|3527784_3528948_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_000980500.1\|3529499_3529718_-	ogr/Delta-like zinc finger family protein	E5G6Q4	Salmonella_phage	2.1e-38	100.0
WP_001102269.1\|3529786_3530887_-	phage late control D family protein	E5G6Q3	Salmonella_phage	2.6e-201	100.0
WP_000980411.1\|3530883_3531369_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.7e-77	100.0
WP_001282770.1\|3531365_3534173_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.8
WP_000763316.1\|3534165_3534285_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
WP_001280964.1\|3534299_3534602_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.6e-44	99.0
WP_001207651.1\|3534656_3535172_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	9.3e-93	100.0
WP_000046108.1\|3535181_3536354_-\|tail	phage tail sheath protein	E5G6P7	Salmonella_phage	8.9e-224	100.0
WP_000974843.1\|3536456_3536681_-	helix-turn-helix domain-containing protein	E5G6P5	Salmonella_phage	1.5e-34	100.0
WP_000143187.1\|3537550_3538126_-\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	4.3e-107	100.0
WP_001274645.1\|3538125_3539979_-\|tail	phage tail protein	E5G6P0	Salmonella_phage	0.0e+00	99.8
WP_001086801.1\|3539975_3540581_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.1e-116	99.5
WP_000268332.1\|3540573_3541482_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.4e-160	100.0
WP_000189373.1\|3541468_3541828_-	GPW/gp25 family protein	E5G6N7	Salmonella_phage	1.1e-60	100.0
WP_001672413.1\|3541824_3542403_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-108	100.0
WP_000958562.1\|3542480_3543332_+	hypothetical protein	E5G6N5	Salmonella_phage	2.8e-163	100.0
WP_000343949.1\|3543333_3543780_-	phage virion morphogenesis protein	E5G6N4	Salmonella_phage	2.3e-71	99.3
WP_001039958.1\|3543772_3544204_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.7e-76	100.0
WP_000196199.1\|3544299_3544728_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.3e-68	100.0
WP_001069921.1\|3544724_3545240_-	lysozyme	E5G6N1	Salmonella_phage	1.2e-95	99.4
WP_000171565.1\|3545220_3545436_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_000868184.1\|3545439_3545643_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000673536.1\|3545642_3546107_-\|head	head completion/stabilization protein	E5G6M8	Salmonella_phage	3.8e-85	99.4
WP_000059173.1\|3546200_3546851_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	4.9e-115	100.0
WP_000730759.1\|3546854_3547916_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.1e-195	100.0
WP_000216276.1\|3547932_3548766_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	3.1e-130	100.0
WP_001098395.1\|3548908_3550675_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	97.1
WP_001542203.1\|3550674_3551715_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	5.5e-201	100.0
WP_001284992.1\|3551818_3553483_-	AIPR family protein	E5G6M2	Salmonella_phage	0.0e+00	99.8
WP_001673609.1\|3553796_3554474_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|3554587_3554821_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154433.1\|3554831_3555020_-	hypothetical protein	E5G6M0	Salmonella_phage	1.4e-27	100.0
WP_000301197.1\|3555172_3557602_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	91.1
WP_000104131.1\|3557592_3558453_-	DNA adenine methylase	E5G6L8	Salmonella_phage	4.5e-132	81.8
WP_001090715.1\|3558449_3559034_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	9.0e-76	72.7
WP_000785513.1\|3559030_3559258_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	3.0e-35	93.3
WP_001244236.1\|3559257_3559491_-	DUF2732 family protein	A0A1S6L021	Salmonella_phage	1.1e-32	97.4
WP_000963480.1\|3559558_3559900_-	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	2.1e-56	100.0
WP_000956166.1\|3559863_3560064_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	1.2e-32	98.5
WP_000460861.1\|3560071_3560581_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	3.6e-89	99.4
WP_000102102.1\|3560613_3560856_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	1.1e-38	100.0
WP_000616878.1\|3560975_3561608_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.1e-116	100.0
WP_001536726.1\|3561611_3562637_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	9.9e-203	100.0
WP_010989063.1\|3564257_3564851_+	hypothetical protein	NA	NA	NA	NA
WP_000248794.1\|3565240_3566434_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_001161781.1\|3566768_3567596_-	hypothetical protein	NA	NA	NA	NA
WP_000701821.1\|3568046_3568262_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001520307.1\|3568297_3570367_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	1.7e-73	35.1
WP_001520831.1\|3570869_3572153_+	AAA family ATPase	NA	NA	NA	NA
WP_010989064.1\|3572197_3573016_+	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_010989065.1\|3573169_3573526_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000749979.1\|3573620_3573905_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	5.4e-18	64.7
WP_000480483.1\|3574017_3574539_+	PTS glucitol/sorbitol transporter subunit IIC	NA	NA	NA	NA
WP_000973738.1\|3574535_3574910_+	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA
WP_001098984.1\|3574906_3575887_+	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA
WP_001033832.1\|3575897_3576911_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000889012.1\|3577205_3578408_+	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_000776032.1\|3578481_3579117_-	3-hexulose-6-phosphate synthase	NA	NA	NA	NA
WP_001682344.1\|3579140_3579704_-	6-phospho-3-hexuloisomerase	NA	NA	NA	NA
WP_000811366.1\|3579703_3580546_-	hypothetical protein	NA	NA	NA	NA
WP_000819716.1\|3580675_3582217_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_000021514.1\|3582439_3584119_+	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_000088556.1\|3585235_3586111_+\|integrase	integrase	NA	NA	NA	NA
WP_001521074.1\|3586276_3588151_+	membrane protein	NA	NA	NA	NA
WP_010989066.1\|3588410_3589694_-	membrane protein	NA	NA	NA	NA
WP_001682341.1\|3590271_3590868_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.6e-99	91.3
3594787:3594802	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007523

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection