CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007559	Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159 chromosome, complete genome	2 crisprs	WYL,csa3,cas3,DEDDh,DinG,cas14j,c2c9_V-U4	2	25	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007559_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007559_1

986599-987847

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

20 spacers

The CRISPR arrays of NZ_CP007559_1

>merge|NZ_CP007559|1|986599-987847|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTGCGGCAGCGCGCAATCGAGACACGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCACAAAACGCCAGTGGCATGGTACAACCCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGACCATGTTTAACTCTAAATCAGGCCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCATGCTTTCGACTAAATACTACCGCGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATAACAACATTATCAGTGTGAAAAGTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATATGAAAAACGTAAAAATTTACACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAAGAACGGCCAGCCCGTCGAGGTATCAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTGTCGTTGCTGGACAGAACTCCGGGGACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGGGCATGGACGGCTCGTACAGTTTTGACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTCCGCTTCTGGTAGTGCTTCCAGACCCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATAGGACAGCCATTCGAGCGCCCAGAGTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCAGTATGCACTGCTTGATAAAGTCAGGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTAACGTCTATAGCTAAATGTAGAGAAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTTTGGAGTCAATGTTATTTCTTCAGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTCGCTGGTTGCTCCAACTCCTGATATGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAAAATCTTCTTTCATATAACCGTAAGGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGCTCTATGTCTAAAAATAAAAGCGGTTCGTGTTCCCTGCGCCAGCGGGGATAAACCCAGCACAATCATTATTAGATGAACTTTCATCAAGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP007559|1|1|986599-987786|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAGAACGGCCAGCCCGTCGAGGTATCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGTCGTTGCTGGACAGAACTCCGGGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGGGCATGGACGGCTCGTACAGTTTTGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC

>NZ_CP007559|1|1|986599-987847|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAGAACGGCCAGCCCGTCGAGGTATCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGTCGTTGCTGGACAGAACTCCGGGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGGGCATGGACGGCTCGTACAGTTTTGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP007559|1|1|986599-987847|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAGAACGGCCAGCCCGTCGAGGTATCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGTCGTTGCTGGACAGAACTCCGGGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGGGCATGGACGGCTCGTACAGTTTTGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007559.2\|WP_001199961.1\|985630_986302_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP007559.2\|WP_000080394.1\|993202_993937_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP007559.2\|WP_000490481.1\|997278_998325_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP007559.2\|WP_001079642.1\|975143_975680_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP007559.2\|WP_000210923.1\|989615_991415_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP007559.2\|WP_000210859.1\|982476_984114_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP007559.2\|WP_001044459.1\|976687_977461_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP007559.2\|WP_001145544.1\|994149_995103_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP007559.2\|WP_000981807.1\|977473_980173_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP007559.2\|WP_001092268.1\|999493_1000933_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP007559.2\|WP_000210451.1\|981448_982249_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP007559.2\|WP_001208002.1\|987944_988742_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP007559.2\|WP_001290654.1\|991414_993127_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP007559.2\|WP_000036734.1\|984196_985495_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP007559.2\|WP_000178270.1\|976161_976668_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP007559.2\|WP_000372384.1\|998575_999484_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP007559.2\|WP_000108313.1\|988829_989192_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP007559.2\|WP_000842512.1\|980252_980840_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP007559.2\|WP_001173663.1\|1000919_1001525_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP007559.2\|WP_000832396.1\|975676_976147_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179

Protein	Function_ID	Function_description	E-value
NZ_CP007559.2\|WP_001199961.1\|985630_986302_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP007559.2\|WP_000080394.1\|993202_993937_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40417e-137
NZ_CP007559.2\|WP_000490481.1\|997278_998325_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP007559.2\|WP_001079642.1\|975143_975680_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.00241e-120
NZ_CP007559.2\|WP_000210923.1\|989615_991415_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP007559.2\|WP_000210859.1\|982476_984114_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP007559.2\|WP_001044459.1\|976687_977461_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP007559.2\|WP_001145544.1\|994149_995103_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP007559.2\|WP_000981807.1\|977473_980173_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP007559.2\|WP_001092268.1\|999493_1000933_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP007559.2\|WP_000210451.1\|981448_982249_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP007559.2\|WP_001208002.1\|987944_988742_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP007559.2\|WP_001290654.1\|991414_993127_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP007559.2\|WP_000036734.1\|984196_985495_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP007559.2\|WP_000178270.1\|976161_976668_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NZ_CP007559.2\|WP_000372384.1\|998575_999484_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP007559.2\|WP_000108313.1\|988829_989192_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP007559.2\|WP_000842512.1\|980252_980840_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP007559.2\|WP_001173663.1\|1000919_1001525_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP007559.2\|WP_000832396.1\|975676_976147_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100

>NZ_CP007559.2|WP_001199961.1|985630_986302_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP007559.2|WP_000036734.1|984196_985495_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP007559.2|WP_000210859.1|982476_984114_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRNEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP007559.2|WP_000210451.1|981448_982249_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP007559.2|WP_000842512.1|980252_980840_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP007559.2|WP_000981807.1|977473_980173_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESSYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP007559.2|WP_001044459.1|976687_977461_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP007559.2|WP_000178270.1|976161_976668_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP007559.2|WP_000832396.1|975676_976147_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP007559.2|WP_001079642.1|975143_975680_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFKLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NZ_CP007559.2|WP_001208002.1|987944_988742_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP007559.2|WP_000108313.1|988829_989192_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP007559.2|WP_000210923.1|989615_991415_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP007559.2|WP_001290654.1|991414_993127_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP007559.2|WP_000080394.1|993202_993937_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRTDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP007559.2|WP_001145544.1|994149_995103_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP007559.2|WP_000490481.1|997278_998325_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP007559.2|WP_000372384.1|998575_999484_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP007559.2|WP_001092268.1|999493_1000933_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP007559.2|WP_001173663.1|1000919_1001525_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS

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Crispr_ID: NZ_CP007559_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007559_2

995791-997264

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

24 spacers

The CRISPR arrays of NZ_CP007559_2

>merge|NZ_CP007559|2|995791-997264|PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATTTACCCGCCACTTATTCCCCATTGCATGTGTTCCCCGCGCCAGCGGGGATAAATCGGGACTATCAAACCATCTATGATGCCAATTTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGGGGCTGGTATTCGATACAGACCCGGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAATAAAAATGAATTTGAGTCAACTCTATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAATATGGTGATAATGTTGCACCTTCGCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTCGGCCTGTTTTTTGATTTTGACAATCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGAAAATCAGCCCGCATATTCCGACACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGTGGTTTTAGGTTGTCGGTGCTGATCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGATTAAACAACAGGATTTTGCAATTACTGTTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGGCAGCAGCGTGAAACACGTCAGTATTGTGTTCCCCGCGCCAGCGGGGATAAACCACCAATAACCGAAATATCCACGGTGGAAATTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCTGTTCCATACTCACCCCCTGTGCAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATGTATGCCGCGACGATCGAGAGCGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCGAAAACGCGCTTTGAAATTCGCACGGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGACGACCCGATGGGGATCCTGCCGTTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGGCTTGTTAATATTTCTCTCACTGACTACGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP007559|2|2|995791-997263|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATC	GGGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	ACCAATAACCGAAATATCCACGGTGGAAATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGGCGAAAACGCGCTTTGAAATTCGCACGGTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGGACGACCCGATGGGGATCCTGCCGTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGAGTATTTGAAATGTACTATAAGGACTTCAT
GTGTTCCCCGCGCCAGTTCTTCAGCTGG	CAACGACAGAATGCGTGTTCCCCGCG
CCAGCGGGGATAAACCGGGGGCTTGTTA	ATATTTCTCTCACTGACTACGGTGTTCCCCGCG
CCAGCGGGGATAAACCGCCGGAAAACTA	TCTCTATCGCAGGCTGGATATGTGTTCCCCGCG
CCAGCGGGGATAAACCGTTCCAAAGGTA	CTCCCATATCTCCAGCCAACGGTGTTCCCCGCG
CCAGCGGGGATAAACCGTAAGTTACGCC	AGTGCGGGCGTGTTGCTCATCGTGTTCCCCGCG
CCAGCGGGGATAAACA

>NZ_CP007559|2|2|995791-996918|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	CCAATAACCGAAATATCCACGGTGGAAATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCGAAAACGCGCTTTGAAATTCGCACGGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGACGACCCGATGGGGATCCTGCCGTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGCGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGCTTGTTAATATTTCTCTCACTGACTACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC


>NZ_CP007559|2|2|995791-996917|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	CCAATAACCGAAATATCCACGGTGGAAATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCGAAAACGCGCTTTGAAATTCGCACGGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGACGACCCGATGGGGATCCTGCCGTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGCGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGCTTGTTAATATTTCTCTCACTGACTACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC


>NZ_CP007559|2|3|996992-997264|CRISPRCasFinder
	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	CCAATAACCGAAATATCCACGGTGGAAATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCGAAAACGCGCTTTGAAATTCGCACGGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGACGACCCGATGGGGATCCTGCCGTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGCGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGCTTGTTAATATTTCTCTCACTGACTACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP007559|2|3|996992-997264|CRT
	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	CCAATAACCGAAATATCCACGGTGGAAATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCGAAAACGCGCTTTGAAATTCGCACGGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGACGACCCGATGGGGATCCTGCCGTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGCGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGCTTGTTAATATTTCTCTCACTGACTACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007559.2\|WP_000741641.1\|1002419_1003130_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP007559.2\|WP_001199961.1\|985630_986302_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP007559.2\|WP_001173663.1\|1000919_1001525_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP007559.2\|WP_000372384.1\|998575_999484_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP007559.2\|WP_000210923.1\|989615_991415_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP007559.2\|WP_001145544.1\|994149_995103_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP007559.2\|WP_001290654.1\|991414_993127_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP007559.2\|WP_000210859.1\|982476_984114_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP007559.2\|WP_001092268.1\|999493_1000933_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP007559.2\|WP_001221538.1\|1004635_1005397_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP007559.2\|WP_001118109.1\|1001542_1001899_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP007559.2\|WP_000210451.1\|981448_982249_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP007559.2\|WP_001208002.1\|987944_988742_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP007559.2\|WP_000517480.1\|1002089_1002401_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP007559.2\|WP_000134243.1\|1003605_1004655_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP007559.2\|WP_000036734.1\|984196_985495_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP007559.2\|WP_000108313.1\|988829_989192_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP007559.2\|WP_000490481.1\|997278_998325_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP007559.2\|WP_001219244.1\|1003129_1003609_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP007559.2\|WP_000080394.1\|993202_993937_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
NZ_CP007559.2\|WP_000741641.1\|1002419_1003130_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.96864e-119
NZ_CP007559.2\|WP_001199961.1\|985630_986302_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP007559.2\|WP_001173663.1\|1000919_1001525_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP007559.2\|WP_000372384.1\|998575_999484_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP007559.2\|WP_000210923.1\|989615_991415_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP007559.2\|WP_001145544.1\|994149_995103_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP007559.2\|WP_001290654.1\|991414_993127_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP007559.2\|WP_000210859.1\|982476_984114_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP007559.2\|WP_001092268.1\|999493_1000933_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP007559.2\|WP_001221538.1\|1004635_1005397_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP007559.2\|WP_001118109.1\|1001542_1001899_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP007559.2\|WP_000210451.1\|981448_982249_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP007559.2\|WP_001208002.1\|987944_988742_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP007559.2\|WP_000517480.1\|1002089_1002401_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP007559.2\|WP_000134243.1\|1003605_1004655_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP007559.2\|WP_000036734.1\|984196_985495_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP007559.2\|WP_000108313.1\|988829_989192_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP007559.2\|WP_000490481.1\|997278_998325_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP007559.2\|WP_001219244.1\|1003129_1003609_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP007559.2\|WP_000080394.1\|993202_993937_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40417e-137

>NZ_CP007559.2|WP_001145544.1|994149_995103_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP007559.2|WP_000080394.1|993202_993937_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRTDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP007559.2|WP_001290654.1|991414_993127_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP007559.2|WP_000210923.1|989615_991415_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP007559.2|WP_000108313.1|988829_989192_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP007559.2|WP_001208002.1|987944_988742_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP007559.2|WP_001199961.1|985630_986302_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP007559.2|WP_000036734.1|984196_985495_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP007559.2|WP_000210859.1|982476_984114_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRNEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP007559.2|WP_000210451.1|981448_982249_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP007559.2|WP_000490481.1|997278_998325_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP007559.2|WP_000372384.1|998575_999484_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP007559.2|WP_001092268.1|999493_1000933_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP007559.2|WP_001173663.1|1000919_1001525_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP007559.2|WP_001118109.1|1001542_1001899_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP007559.2|WP_000517480.1|1002089_1002401_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP007559.2|WP_000741641.1|1002419_1003130_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP007559.2|WP_001219244.1|1003129_1003609_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP007559.2|WP_000134243.1|1003605_1004655_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALHWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP007559.2|WP_001221538.1|1004635_1005397_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP007559_2	2.24\|997215\|33\|NZ_CP007559\|PILER-CR	997215-997247	33	NZ_CP007559.2	2671102-2671134	0	1.0
NZ_CP007559_2	2.46\|997204\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	997204-997235	32	NZ_CP007559.2	2671102-2671133	0	1.0

1. spacer 2.24|997215|33|NZ_CP007559|PILER-CR matches to position: 2671102-2671134, mismatch: 0, identity: 1.0

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcgggcgtgttgctcatc	Protospacer
*********************************

2. spacer 2.46|997204|32|NZ_CP007559|CRISPRCasFinder,CRT matches to position: 2671102-2671133, mismatch: 0, identity: 1.0

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcgggcgtgttgctcatc	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007559_2	2.24\|997215\|33\|NZ_CP007559\|PILER-CR	997215-997247	33	NC_004313	Salmonella phage ST64B, complete genome	31960-31992	1	0.97
NZ_CP007559_2	2.24\|997215\|33\|NZ_CP007559\|PILER-CR	997215-997247	33	KU927493	Salmonella phage 118970_sal3, complete genome	69572-69604	1	0.97
NZ_CP007559_2	2.24\|997215\|33\|NZ_CP007559\|PILER-CR	997215-997247	33	AY055382	Salmonella typhimurium phage ST64B complete sequence	31960-31992	1	0.97
NZ_CP007559_2	2.46\|997204\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	997204-997235	32	NC_004313	Salmonella phage ST64B, complete genome	31961-31992	1	0.969
NZ_CP007559_2	2.46\|997204\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	997204-997235	32	KU927493	Salmonella phage 118970_sal3, complete genome	69573-69604	1	0.969
NZ_CP007559_2	2.46\|997204\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	997204-997235	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	31961-31992	1	0.969
NZ_CP007559_2	2.42\|996857\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996857-996888	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1493565-1493596	5	0.844
NZ_CP007559_2	2.42\|996857\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996857-996888	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	917379-917410	5	0.844
NZ_CP007559_1	1.18\|987665\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987665-987696	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
NZ_CP007559_1	1.3\|986750\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	986750-986781	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
NZ_CP007559_2	2.4\|996002\|33\|NZ_CP007559\|PILER-CR	996002-996034	33	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30993	7	0.788
NZ_CP007559_2	2.14\|996612\|33\|NZ_CP007559\|PILER-CR	996612-996644	33	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304163-304195	7	0.788
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
NZ_CP007559_2	2.38\|996613\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996613-996644	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304164-304195	7	0.781
NZ_CP007559_2	2.38\|996613\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996613-996644	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194537	7	0.781
NZ_CP007559_1	1.9\|987116\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987116-987147	32	KR053200	Gordonia phage GTE6, complete genome	31264-31295	8	0.75
NZ_CP007559_1	1.13\|987360\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987360-987391	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
NZ_CP007559_2	2.3\|995941\|33\|NZ_CP007559\|PILER-CR	995941-995973	33	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888442	8	0.758
NZ_CP007559_2	2.3\|995941\|33\|NZ_CP007559\|PILER-CR	995941-995973	33	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888440	8	0.758
NZ_CP007559_2	2.4\|996002\|33\|NZ_CP007559\|PILER-CR	996002-996034	33	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294662	8	0.758
NZ_CP007559_2	2.14\|996612\|33\|NZ_CP007559\|PILER-CR	996612-996644	33	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194538	8	0.758
NZ_CP007559_2	2.38\|996613\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996613-996644	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756038-1756069	8	0.75
NZ_CP007559_2	2.38\|996613\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996613-996644	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879041	8	0.75
NZ_CP007559_1	1.15\|987482\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987482-987513	32	MN693011	Marine virus AFVG_117M58, complete genome	34901-34932	9	0.719
NZ_CP007559_1	1.18\|987665\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987665-987696	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
NZ_CP007559_1	1.18\|987665\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987665-987696	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
NZ_CP007559_1	1.18\|987665\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987665-987696	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
NZ_CP007559_2	2.14\|996612\|33\|NZ_CP007559\|PILER-CR	996612-996644	33	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756037-1756069	9	0.727
NZ_CP007559_2	2.14\|996612\|33\|NZ_CP007559\|PILER-CR	996612-996644	33	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879042	9	0.727
NZ_CP007559_2	2.18\|996856\|33\|NZ_CP007559\|PILER-CR	996856-996888	33	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	144846-144878	9	0.727
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
NZ_CP007559_2	2.28\|996003\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996003-996034	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
NZ_CP007559_2	2.30\|996125\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996125-996156	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
NZ_CP007559_2	2.36\|996491\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996491-996522	32	NZ_CP054046	Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence	90958-90989	9	0.719
NZ_CP007559_2	2.42\|996857\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996857-996888	32	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	144847-144878	9	0.719
NZ_CP007559_2	2.43\|997021\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	997021-997052	32	MK765565	Tortoise microvirus 15 isolate 15_SP_71, complete genome	3158-3189	9	0.719
NZ_CP007559_2	2.43\|997021\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	997021-997052	32	MK765613	Tortoise microvirus 61 isolate 61_SP_107, complete genome	3173-3204	9	0.719
NZ_CP007559_2	2.46\|997204\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	997204-997235	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	111308-111339	9	0.719
NZ_CP007559_1	1.7\|986994\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	986994-987025	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688
NZ_CP007559_1	1.14\|987421\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987421-987452	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
NZ_CP007559_1	1.14\|987421\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987421-987452	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
NZ_CP007559_1	1.19\|987726\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987726-987757	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
NZ_CP007559_1	1.19\|987726\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987726-987757	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
NZ_CP007559_1	1.19\|987726\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987726-987757	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
NZ_CP007559_1	1.19\|987726\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987726-987757	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
NZ_CP007559_1	1.20\|987787\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	987787-987818	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
NZ_CP007559_2	2.27\|995942\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	995942-995973	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
NZ_CP007559_2	2.27\|995942\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	995942-995973	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
NZ_CP007559_2	2.29\|996064\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996064-996095	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
NZ_CP007559_2	2.31\|996186\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996186-996217	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	191710-191741	10	0.688
NZ_CP007559_2	2.31\|996186\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996186-996217	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	237223-237254	10	0.688
NZ_CP007559_2	2.38\|996613\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	996613-996644	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	91874-91905	10	0.688
NZ_CP007559_1	1.10\|987177\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987177-987208	32	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	4151-4182	11	0.656
NZ_CP007559_1	1.10\|987177\|32\|NZ_CP007559\|PILER-CR,CRISPRCasFinder,CRT	987177-987208	32	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	777802-777833	11	0.656

1. spacer 2.24|997215|33|NZ_CP007559|PILER-CR matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.97

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
*****************.***************

2. spacer 2.24|997215|33|NZ_CP007559|PILER-CR matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.97

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
*****************.***************

3. spacer 2.24|997215|33|NZ_CP007559|PILER-CR matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.97

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
*****************.***************

4. spacer 2.46|997204|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

5. spacer 2.46|997204|32|NZ_CP007559|CRISPRCasFinder,CRT matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

6. spacer 2.46|997204|32|NZ_CP007559|CRISPRCasFinder,CRT matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

7. spacer 2.42|996857|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.844

--ccggacgacccgatggggatcctgccgttgct	CRISPR spacer
tcccggccg--ccgatggcgatcctgccggtgct	Protospacer
  **** **  ******* ********** ****

8. spacer 2.42|996857|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.844

--ccggacgacccgatggggatcctgccgttgct	CRISPR spacer
tcccggccg--ccgatggcgatcctgccggtgct	Protospacer
  **** **  ******* ********** ****

9. spacer 1.18|987665|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
tgaaaatcttctttcatagaaacgtatgtatt	Protospacer
*.**************** ** **** * .**

10. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
ataataaaaaagtatttgagtcaactgatata-	Protospacer
. ******** * *************  ****

11. spacer 1.3|986750|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

cagtgcggcagcgcgcaatcgagacacgccat	CRISPR spacer
cggtgcgacagcgagcaatcgagacgggctct	Protospacer
*.*****.***** ***********. **. *

12. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

13. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

14. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

agcacaatcattattagatgaactt--tcatcaa	CRISPR spacer
aacacaagaattattagatgaacttggtgatg--	Protospacer
*.*****  ****************  * **

15. spacer 2.4|996002|33|NZ_CP007559|PILER-CR matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 7, identity: 0.788

gggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
tataataaaaaagtatttgagtcaactgatata-	Protospacer
 . ******** * *************  ****

16. spacer 2.14|996612|33|NZ_CP007559|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.788

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
ggcgatgtatgccgcgacgattgaatccacgct	Protospacer
*********************.**.  *. .**

17. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
tgtataaaaatgaatttgaggtaactccctac	Protospacer
 * ***************** .*****. **

18. spacer 2.38|996613|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gcgatgtatgccgcgacgattgaatccacgct	Protospacer
********************.**.  *. .**

19. spacer 2.38|996613|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
accattcatgccgcgacgaacaagagcgaaca	Protospacer
.* ** .************ *.*********

20. spacer 1.9|987116|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to KR053200 (Gordonia phage GTE6, complete genome) position: , mismatch: 8, identity: 0.75

tgaagaacggccagcccgtcgaggtatcaatc	CRISPR spacer
tgaagatcgaccagcccgtcgagccggtgatc	Protospacer
****** **.************* .. ..***

21. spacer 1.13|987360|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

caataggacagccattcgagcgcccagagttt	CRISPR spacer
tcacaggacagctattcgagcgcccagtccgt	Protospacer
. *.********.**************  . *

22. spacer 2.3|995941|33|NZ_CP007559|PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcgc-ggggctggtattcgatacagacccggcta	CRISPR spacer
-cgctcgggctggtattcgattccgacccgcgcc	Protospacer
 ***  *************** * ******  .

23. spacer 2.3|995941|33|NZ_CP007559|PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcgc-ggggctggtattcgatacagacccggcta	CRISPR spacer
-cgctcgggctggtattcgattccgacccgcgcc	Protospacer
 ***  *************** * ******  .

24. spacer 2.4|996002|33|NZ_CP007559|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.758

gggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttgtataaaaatgaatttgaggtaactccctac	Protospacer
  * ***************** .*****. **

25. spacer 2.14|996612|33|NZ_CP007559|PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 8, identity: 0.758

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
caccattcatgccgcgacgaacaagagcgaaca	Protospacer
 .* ** .************ *.*********

26. spacer 2.38|996613|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

27. spacer 2.38|996613|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

28. spacer 1.15|987482|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 9, identity: 0.719

aactaacgtctatagctaaatgtagagaaaac	CRISPR spacer
taaaaggttctatagctaaaagtggagaaaat	Protospacer
 *  *.  ************ **.*******.

29. spacer 1.18|987665|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

30. spacer 1.18|987665|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

31. spacer 1.18|987665|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

32. spacer 2.14|996612|33|NZ_CP007559|PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.727

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tgaaccttatgccacgacgatcgagaacgaaca	Protospacer
 * . . ******.************.*****

33. spacer 2.14|996612|33|NZ_CP007559|PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.727

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tgaaccttatgccacgacgatcgagaacgaaca	Protospacer
 * . . ******.************.*****

34. spacer 2.18|996856|33|NZ_CP007559|PILER-CR matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

gccggacgacccgatggggatcctgccgttgct	CRISPR spacer
gccggacgccccggtggggatcctcgggatcgg	Protospacer
******** ****.**********   * *

35. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

36. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

37. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

38. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

39. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

40. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

41. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

42. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

43. spacer 2.28|996003|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

44. spacer 2.30|996125|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

gactcggcctgttttttgattttgacaatcag	CRISPR spacer
ccgtcggcctgttctttcattttgacttacac	Protospacer
   **********.*** ********   **

45. spacer 2.36|996491|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccaataaccgaaatatccacggtggaaatttc	CRISPR spacer
ctttttacaggaatatccacggtggaaatagt	Protospacer
*.  * ** *.******************  .

46. spacer 2.42|996857|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

ccggacgacccgatggggatcctgccgttgct	CRISPR spacer
ccggacgccccggtggggatcctcgggatcgg	Protospacer
******* ****.**********   * *

47. spacer 2.43|997021|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MK765565 (Tortoise microvirus 15 isolate 15_SP_71, complete genome) position: , mismatch: 9, identity: 0.719

ggggcttgttaatatttctctcactgactacg	CRISPR spacer
agaacgtgttaatatttcactcgctgacttta	Protospacer
.*..* ************ ***.****** ..

48. spacer 2.43|997021|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MK765613 (Tortoise microvirus 61 isolate 61_SP_107, complete genome) position: , mismatch: 9, identity: 0.719

ggggcttgttaatatttctctcactgactacg	CRISPR spacer
agaacgtgttaatatttcactcgctgacttta	Protospacer
.*..* ************ ***.****** ..

49. spacer 2.46|997204|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taagttac---gccagtgcgggcgtgttgctcatc	CRISPR spacer
---actgcgcggcgagtgcgggcgcgttgctcatg	Protospacer
   ..*.*   ** **********.*********

50. spacer 1.7|986994|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

aaaataacaacattatcagtgtgaaaagtctc	CRISPR spacer
gcaataacaaccttatcagtgtcaactttaat	Protospacer
. ********* ********** **   *  .

51. spacer 1.14|987421|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

52. spacer 1.14|987421|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

53. spacer 1.19|987726|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

54. spacer 1.19|987726|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

55. spacer 1.19|987726|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

56. spacer 1.19|987726|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

57. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
tcttatggcattattagatgaattttcaacaa	Protospacer
  .   . **************.***** ***

58. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

59. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

60. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

61. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

62. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

63. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

64. spacer 1.20|987787|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

65. spacer 2.27|995942|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

66. spacer 2.27|995942|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

67. spacer 2.29|996064|32|NZ_CP007559|CRISPRCasFinder,CRT matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

ccgaatatggtgataatgttgcaccttcgctc	CRISPR spacer
ctacttatggtgataatgtttcaccgtcttgg	Protospacer
*..  *************** **** ** .

68. spacer 2.31|996186|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.688

ccaataaccgacgagggcaaacgccgtgcgcg	CRISPR spacer
atcagcgccgacgagggcacccgccgtgcggt	Protospacer
 . *  .************  *********

69. spacer 2.31|996186|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

ccaataaccgacgagggcaaacgccgtgcgcg	CRISPR spacer
atcagcgccgacgagggcacccgccgtgcggt	Protospacer
 . *  .************  *********

70. spacer 2.38|996613|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 10, identity: 0.688

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tttgtccatgccgcgacgatcgataccgaaaa	Protospacer
 . .* .**************** * ****

71. spacer 1.10|987177|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 11, identity: 0.656

cgttgtcgttgctggacagaactccggggacg	CRISPR spacer
tcaggtcgaggctggacagaactccggatctc	Protospacer
.   ****  *****************.  .

72. spacer 1.10|987177|32|NZ_CP007559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 11, identity: 0.656

cgttgtcgttgctggacagaactccggggacg	CRISPR spacer
tcaggtcgaggctggacagaactccggatctc	Protospacer
.   ****  *****************.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1689790 : 1698961

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569168.1\|1689790_1690738_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
WP_000824854.1\|1690721_1691453_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1691433_1691541_-	protein YohO	NA	NA	NA	NA
WP_001240417.1\|1691600_1692332_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|1692554_1694240_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1694236_1694956_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1695002_1695470_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|1695526_1696057_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1696228_1696687_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195330.1\|1696927_1698961_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_2

1767052 : 1777559

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111847.1\|1767052_1768456_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981471.1\|1768633_1769527_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697840.1\|1769903_1770989_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_001023659.1\|1770988_1771888_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000857530.1\|1771935_1772814_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_000973714.1\|1772814_1773366_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
WP_000018224.1\|1773371_1774346_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|1774361_1775135_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565902.1\|1775139_1776219_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_000126351.1\|1776245_1777559_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1

DBSCAN-SWA_3

1870692 : 1881309

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001219016.1\|1870692_1871166_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	1.6e-38	76.6
WP_001669246.1\|1871812_1872103_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.2e-08	49.1
WP_000598920.1\|1872474_1873272_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_001537372.1\|1873752_1873914_+	hypothetical protein	NA	NA	NA	NA
WP_000394197.1\|1874040_1874460_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457662.1\|1874462_1875731_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.2e-227	92.2
WP_000208509.1\|1876186_1876399_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131109.1\|1876409_1876598_+	hypothetical protein	NA	NA	NA	NA
WP_001080675.1\|1876857_1878069_-	porin	Q1MVN1	Enterobacteria_phage	1.3e-108	56.0
WP_000107435.1\|1878718_1879030_+	hypothetical protein	NA	NA	NA	NA
WP_000377047.1\|1879109_1879805_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	7.3e-08	27.1
WP_001157308.1\|1879878_1881309_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_4

2609182 : 2683598

Salmonella_phage(68.0%)

capsid,tRNA,holin,portal,head,tail,protease,plate,integrase,terminase

attL 2629821:2629837|attR 2683117:2683133

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162264798.1\|2609182_2609701_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_000272239.1\|2609697_2609805_-	hypothetical protein	NA	NA	NA	NA
WP_000460698.1\|2610010_2610457_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_000579793.1\|2610436_2611231_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000205341.1\|2611331_2612516_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_001222527.1\|2612634_2612982_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_000487129.1\|2612967_2613279_-	hypothetical protein	NA	NA	NA	NA
WP_000673492.1\|2613347_2613599_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001589065.1\|2613794_2613893_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_000512149.1\|2614031_2614280_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_001669273.1\|2614593_2615235_-	hypothetical protein	NA	NA	NA	NA
WP_000513733.1\|2615464_2615647_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_001248993.1\|2615649_2616012_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000457190.1\|2616184_2616823_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_000617979.1\|2617019_2617565_-	chorismate mutase	NA	NA	NA	NA
WP_000908466.1\|2617647_2617803_+	hypothetical protein	NA	NA	NA	NA
WP_000208086.1\|2617881_2618130_+	hypothetical protein	NA	NA	NA	NA
WP_000190263.1\|2618384_2619233_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001562706.1\|2619301_2619895_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000175807.1\|2620039_2620828_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
WP_001537483.1\|2620936_2621584_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_001183699.1\|2621780_2622107_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_000456065.1\|2622300_2623434_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_000947460.1\|2623515_2624106_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_000950203.1\|2624099_2624897_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_000966649.1\|2624890_2625703_-	ABC transporter permease	NA	NA	NA	NA
WP_001669523.1\|2625692_2626667_-	ABC transporter permease	NA	NA	NA	NA
WP_000946082.1\|2626666_2628301_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000182479.1\|2628981_2629296_+	hypothetical protein	NA	NA	NA	NA
WP_000929980.1\|2629444_2629975_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
2629821:2629837	attL	NA	NA	NA	NA
WP_000761747.1\|2630057_2631101_-	exo-alpha-sialidase	NA	NA	NA	NA
WP_001218118.1\|2631439_2631907_-	Hsp20 family protein	NA	NA	NA	NA
WP_000927825.1\|2632104_2632332_-	hypothetical protein	NA	NA	NA	NA
WP_000758947.1\|2632531_2632657_-	lipoprotein	NA	NA	NA	NA
WP_000977725.1\|2633034_2633379_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_000789471.1\|2634600_2635158_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	1.0e-15	33.0
WP_012664625.1\|2635969_2636233_+	virulence protein PagD	NA	NA	NA	NA
WP_001537306.1\|2636364_2636577_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_001520581.1\|2636990_2637512_+	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_000497451.1\|2637702_2637942_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_001033398.1\|2638431_2639220_+	hypothetical protein	NA	NA	NA	NA
WP_000917256.1\|2640211_2641336_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_077918985.1\|2641783_2641996_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-20	92.6
WP_046376790.1\|2642249_2642921_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.6e-81	61.3
WP_046376791.1\|2643308_2644439_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	1.0e-35	33.1
WP_046376792.1\|2644492_2645023_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	9.0e-75	79.0
WP_001207832.1\|2646367_2646955_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_046376793.1\|2646957_2648037_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	5.0e-205	99.7
WP_000605051.1\|2648029_2648443_-	hypothetical protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
WP_001273652.1\|2648447_2648981_-\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	5.5e-96	98.3
WP_046376794.1\|2648980_2650039_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	1.5e-201	99.4
WP_023250594.1\|2650035_2651376_-\|tail	tail/DNA circulation protein	A0A192Y5U9	Salmonella_phage	1.6e-248	98.7
WP_046376795.1\|2651409_2653338_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.1
WP_000588852.1\|2653422_2653749_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_046376796.1\|2653745_2654102_-\|tail	tail protein	A0A192Y8K0	Salmonella_phage	3.8e-61	99.2
WP_001007996.1\|2654101_2655598_-\|tail	tail sheath protein	A0A192Y7L1	Salmonella_phage	2.1e-278	100.0
WP_065305452.1\|2655587_2655752_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.1e-23	98.1
WP_046376797.1\|2655755_2656316_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	6.8e-105	98.9
WP_001135697.1\|2656312_2656825_-	hypothetical protein	Q8HAC8	Salmonella_phage	4.6e-92	100.0
WP_000702410.1\|2656796_2657201_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	3.2e-72	100.0
WP_000927378.1\|2657197_2657521_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
WP_000601353.1\|2657523_2657724_-	hypothetical protein	Q8HAD1	Salmonella_phage	1.4e-28	100.0
WP_023231285.1\|2657774_2658980_-\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	1.2e-223	99.8
WP_001193639.1\|2658994_2659645_-\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	1.5e-119	100.0
WP_000466254.1\|2659622_2660864_-\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.0e-242	99.8
WP_000605609.1\|2660863_2661046_-	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_000088185.1\|2661057_2662791_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	99.8
WP_000929191.1\|2662787_2663282_-\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	4.6e-89	100.0
WP_023227968.1\|2663405_2663756_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	8.9e-63	95.7
WP_046376798.1\|2663808_2664003_-	hypothetical protein	NA	NA	NA	NA
WP_024148265.1\|2664533_2664926_-	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	1.3e-51	84.6
WP_023219694.1\|2664915_2665386_-	glycoside hydrolase family protein	S5FV07	Shigella_phage	8.5e-85	96.8
WP_023219695.1\|2665389_2665725_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	7.7e-56	95.5
WP_001037093.1\|2666058_2666577_+	hypothetical protein	NA	NA	NA	NA
WP_001163088.1\|2666582_2667467_+	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_023219696.1\|2667488_2667836_-	antitermination protein from phage origin	A0A0P0ZCW0	Stx2-converting_phage	1.2e-56	90.0
WP_024147466.1\|2667853_2668843_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.1e-188	96.0
WP_046376800.1\|2668850_2669711_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	7.8e-161	99.0
WP_023219699.1\|2669727_2670117_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.4e-61	85.3
WP_046376801.1\|2670113_2670767_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	2.7e-113	88.5
WP_023252186.1\|2670766_2671249_-	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	4.6e-86	98.1
WP_046376802.1\|2671250_2672225_-	GntR family transcriptional regulator	U5P0A0	Shigella_phage	2.8e-122	82.1
WP_000620702.1\|2672221_2672446_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_046376803.1\|2672442_2673585_-	peptidase	A0A1C9IHV9	Salmonella_phage	8.7e-184	88.2
WP_000509731.1\|2673581_2674136_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_001191666.1\|2674164_2674389_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_001020640.1\|2674486_2675182_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	4.6e-127	99.6
WP_000997190.1\|2675994_2676366_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
WP_046376804.1\|2676423_2677251_+	YfdQ family protein	Q8HAA2	Salmonella_phage	1.6e-150	98.2
WP_000008351.1\|2677387_2677927_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_000089141.1\|2678069_2678306_+	excisionase	NA	NA	NA	NA
WP_046376805.1\|2678295_2679438_+\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	3.1e-173	80.0
WP_000444509.1\|2679551_2680802_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
WP_046376806.1\|2680973_2681639_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000825956.1\|2681635_2681965_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_000476065.1\|2681976_2682438_+	NUDIX hydrolase	NA	NA	NA	NA
WP_000004540.1\|2682491_2683598_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2683117:2683133	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2828403 : 2928774

Enterobacteria_phage(32.08%)

capsid,lysis,transposase,tRNA,holin,portal,head,tail,protease,integrase,terminase

attL 2852494:2852513|attR 2925847:2925866

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938182.1\|2828403_2829084_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	9.8e-82	71.0
WP_000374046.1\|2829702_2830362_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|2830448_2830778_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|2830774_2831056_-	acylphosphatase	NA	NA	NA	NA
WP_000548080.1\|2831104_2831884_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000859429.1\|2831909_2832458_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140482.1\|2832672_2833884_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|2833941_2834259_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|2834303_2834717_-	CoA-binding protein	NA	NA	NA	NA
WP_000847732.1\|2834890_2835553_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|2835647_2836106_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420513.1\|2836141_2838196_-	DNA helicase IV	A7KV33	Bacillus_phage	1.1e-19	27.6
WP_001261222.1\|2838319_2838766_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950876.1\|2838784_2840938_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_046376809.1\|2840924_2841530_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|2841746_2842256_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001670727.1\|2842612_2843665_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|2843735_2844188_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156448.1\|2844373_2846134_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|2846202_2846721_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|2846820_2846988_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|2847243_2847807_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433416.1\|2847803_2849444_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|2849448_2850702_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|2850716_2852624_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
2852494:2852513	attL	NA	NA	NA	NA
WP_001086485.1\|2852636_2854745_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224072.1\|2854843_2855953_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001220671.1\|2855949_2856492_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291723.1\|2856657_2857668_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193772.1\|2857875_2860488_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
WP_000497440.1\|2860914_2861121_+	DinI-like family protein	S4TNM0	Salmonella_phage	1.8e-31	100.0
WP_001536069.1\|2861596_2862397_+	hypothetical protein	NA	NA	NA	NA
WP_010835411.1\|2862964_2864455_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	1.6e-254	98.6
WP_000143168.1\|2865284_2865866_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.3e-94	88.9
WP_024792694.1\|2865865_2868067_-\|tail	tail protein	E5G6P0	Salmonella_phage	6.5e-159	76.1
WP_000178849.1\|2868120_2868363_-	hypothetical protein	NA	NA	NA	NA
WP_000514902.1\|2868401_2871764_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.5
WP_001750110.1\|2871825_2872473_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.6e-89	78.1
WP_000662738.1\|2872370_2873108_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.8e-128	84.2
WP_001152686.1\|2873114_2873813_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.6e-103	75.9
WP_000447370.1\|2873822_2874152_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
WP_000372075.1\|2874154_2877250_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	4.8e-277	61.7
WP_010989052.1\|2877221_2877560_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|2877556_2877952_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_000971954.1\|2878002_2878749_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000033885.1\|2878756_2879158_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000677089.1\|2879154_2879733_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000817265.1\|2879841_2880972_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	4.0e-213	98.1
WP_000083292.1\|2881004_2881388_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.2e-28	55.6
WP_000201486.1\|2881398_2881758_-	DNA packaging protein	NA	NA	NA	NA
WP_000522566.1\|2881815_2882844_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|2882898_2883246_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_001189495.1\|2883258_2884755_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	3.3e-98	52.9
WP_046376810.1\|2884744_2886325_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.1e-187	62.6
WP_000201416.1\|2886321_2886525_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	2.1e-16	70.8
WP_000623086.1\|2886508_2888440_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.0e-257	65.4
WP_001102153.1\|2888411_2888957_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669693.1\|2889242_2889644_+	hypothetical protein	NA	NA	NA	NA
WP_001533543.1\|2889879_2890332_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000984587.1\|2890349_2890802_-	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	98.0
WP_001574216.1\|2890785_2891115_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001110788.1\|2891390_2892077_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM2	Phage_Gifsy-1	5.1e-131	98.7
WP_000798706.1\|2892437_2892887_+	lipoprotein	NA	NA	NA	NA
WP_001534733.1\|2893022_2893148_-	hypothetical protein	NA	NA	NA	NA
WP_001047630.1\|2893546_2894344_-	antitermination protein	A0A0M4S661	Salmonella_phage	4.0e-151	99.6
WP_001617856.1\|2894333_2894480_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_000784707.1\|2894476_2894704_-	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	6.6e-19	76.8
WP_000940758.1\|2894700_2895300_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	6.1e-96	82.9
WP_024135617.1\|2895363_2895669_-	hypothetical protein	NA	NA	NA	NA
WP_100148602.1\|2895888_2896269_-	T3SS effector NleG family protein	B6DZB9	Enterobacteria_phage	7.5e-23	51.5
WP_000089413.1\|2896809_2897205_-	DUF977 family protein	A0A088CBK9	Shigella_phage	2.0e-18	39.3
WP_000788952.1\|2897222_2897975_-	ATP-binding protein	A0A088CBP4	Shigella_phage	1.7e-103	77.0
WP_046376811.1\|2897981_2898851_-	hypothetical protein	A0A088CD36	Shigella_phage	1.2e-31	58.5
WP_001669257.1\|2898895_2899390_-	hypothetical protein	NA	NA	NA	NA
WP_001033909.1\|2899376_2899631_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
WP_001224472.1\|2899727_2900153_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	1.2e-13	56.3
WP_024135615.1\|2900596_2900776_-	hypothetical protein	NA	NA	NA	NA
WP_046376812.1\|2901206_2901491_+	hypothetical protein	K7PGY4	Enterobacteria_phage	3.0e-08	53.2
WP_023205995.1\|2901512_2901863_+	hypothetical protein	S4TSN6	Salmonella_phage	3.2e-60	96.6
WP_023204245.1\|2901989_2904917_+	gifsy-1 prophage RecE	S4TNL0	Salmonella_phage	0.0e+00	99.1
WP_001539618.1\|2904879_2906037_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|2906079_2906319_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|2906359_2906608_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262306.1\|2906652_2907945_+\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000191406.1\|2908139_2909342_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_000893197.1\|2909422_2910856_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000544853.1\|2911101_2912316_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000762343.1\|2912632_2913094_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000117870.1\|2913294_2914695_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000977709.1\|2915301_2916393_+	porin OmpF	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
WP_000462653.1\|2916577_2917768_+	aspartate transaminase	NA	NA	NA	NA
WP_001109471.1\|2917829_2918477_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000357052.1\|2918504_2919053_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_000925875.1\|2919312_2921160_-	L,D-transpeptidase	NA	NA	NA	NA
WP_000572746.1\|2921504_2925971_-	chromosome partition protein MukB	NA	NA	NA	NA
2925847:2925866	attR	NA	NA	NA	NA
WP_000060024.1\|2925970_2926675_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288828.1\|2926655_2927978_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001154027.1\|2927970_2928774_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_6

2979306 : 2986619

Ralstonia_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001669319.1\|2979306_2979684_+	hypothetical protein	A0A077KET4	Ralstonia_phage	2.6e-20	41.0
WP_001117983.1\|2979845_2980043_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|2980255_2982532_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|2982562_2982883_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|2983206_2983428_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125893.1\|2983557_2985504_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_001201751.1\|2985500_2986619_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_7

4073732 : 4082680

Enterobacteria_phage(83.33%)

integrase

attL 4070957:4070973|attR 4082850:4082866

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4070957:4070973	attL	NA	NA	NA	NA
WP_000783715.1\|4073732_4076066_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	85.3
WP_000743145.1\|4076080_4076401_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216597.1\|4076397_4076625_-	hypothetical protein	NA	NA	NA	NA
WP_000979749.1\|4076621_4077173_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.2e-29	64.5
WP_000556587.1\|4077169_4077436_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_162295697.1\|4077540_4077669_+	hypothetical protein	NA	NA	NA	NA
WP_001082772.1\|4077910_4078720_+	hypothetical protein	NA	NA	NA	NA
WP_000468231.1\|4078723_4078963_+	hypothetical protein	Q7M294	Enterobacteria_phage	2.4e-19	59.3
WP_000214429.1\|4078978_4079545_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.9e-61	65.9
WP_000775190.1\|4079983_4080925_+	hypothetical protein	NA	NA	NA	NA
WP_000772664.1\|4081411_4082680_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.7e-75	40.7
4082850:4082866	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4337040 : 4368467

Edwardsiella_phage(25.0%)

capsid,lysis,tRNA,tail,integrase,terminase

attL 4332775:4332790|attR 4361664:4361679

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4332775:4332790	attL	NA	NA	NA	NA
WP_046376831.1\|4337040_4338078_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_046376832.1\|4338168_4339251_+\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	2.2e-152	70.8
WP_046376833.1\|4339375_4340932_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_046376834.1\|4341002_4341857_-	protein YibB	NA	NA	NA	NA
WP_046376835.1\|4342007_4342583_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	9.7e-91	86.4
WP_046376836.1\|4342582_4344034_-\|tail	tail fiber protein	E5G6P0	Salmonella_phage	1.5e-42	70.7
WP_001181748.1\|4344023_4344626_-	DUF2612 domain-containing protein	A0A2R3UAM9	Myoviridae_environmental_samples	4.3e-33	38.9
WP_001293657.1\|4344627_4345869_-	hypothetical protein	A0A077KGW9	Edwardsiella_phage	1.2e-101	49.9
WP_046376837.1\|4345865_4346222_-	hypothetical protein	A0A077KCA1	Edwardsiella_phage	9.5e-20	49.1
WP_046376838.1\|4346234_4346912_-	oxidoreductase	A0A077KAY0	Edwardsiella_phage	5.6e-29	34.1
WP_046376839.1\|4346892_4347762_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	2.4e-32	33.1
WP_046376840.1\|4347758_4348061_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	4.1e-24	48.0
WP_046376842.1\|4348833_4351056_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.0e-50	59.2
WP_046376843.1\|4351039_4351222_-	hypothetical protein	NA	NA	NA	NA
WP_046376844.1\|4351263_4351668_-	hypothetical protein	H9C0W7	Aeromonas_phage	2.4e-19	45.7
WP_046376845.1\|4351667_4352114_-	hypothetical protein	Q2NPD1	Xanthomonas_phage	3.7e-21	40.4
WP_046376846.1\|4352114_4353599_-	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	1.5e-95	40.8
WP_046376847.1\|4353579_4354125_-	hypothetical protein	NA	NA	NA	NA
WP_046376848.1\|4354109_4354475_-	hypothetical protein	A0A077KAW7	Edwardsiella_phage	2.3e-21	40.5
WP_046376849.1\|4354471_4355056_-	hypothetical protein	H9C0W2	Aeromonas_phage	9.4e-17	30.6
WP_046376850.1\|4355049_4355505_-	DUF4054 domain-containing protein	H9C0W0	Aeromonas_phage	7.3e-17	46.0
WP_046376851.1\|4355511_4355859_-	hypothetical protein	H9C0V9	Aeromonas_phage	3.9e-10	40.2
WP_046376852.1\|4355862_4356891_-	hypothetical protein	A0A219YBB0	Aeromonas_phage	3.3e-81	48.4
WP_046376853.1\|4356890_4357373_-	hypothetical protein	A0A2R3UAX9	Myoviridae_environmental_samples	5.4e-26	47.2
WP_046376854.1\|4357374_4358721_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	2.9e-69	37.9
WP_046376855.1\|4358717_4359407_-\|capsid	minor capsid protein	H9C0V1	Aeromonas_phage	1.3e-57	49.1
WP_046376856.1\|4359447_4360968_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	5.3e-104	43.7
WP_046376891.1\|4360967_4362587_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	8.4e-257	78.8
4361664:4361679	attR	NA	NA	NA	NA
WP_046376857.1\|4362592_4363165_-\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	5.0e-55	62.5
WP_046376858.1\|4363187_4363685_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.3e-46	76.4
WP_046376859.1\|4363785_4364325_-	lysozyme	K7PLY1	Enterobacteria_phage	4.2e-80	75.1
WP_046376860.1\|4364302_4364608_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_112041632.1\|4364871_4364931_+	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
WP_046376861.1\|4364991_4365177_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_046376892.1\|4365473_4365899_-	antitermination protein Q	B6SCY2	Bacteriophage	7.3e-19	41.5
WP_102017351.1\|4366433_4368467_-	replication protein	B6SCY1	Bacteriophage	2.1e-148	62.5

DBSCAN-SWA_9

4373278 : 4383920

Bacteriophage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046376868.1\|4373278_4374562_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	3.3e-107	48.8
WP_046376869.1\|4374585_4375134_+	DUF2815 family protein	Q775A5	Bordetella_phage	9.3e-67	68.1
WP_046376870.1\|4375183_4375819_+	hypothetical protein	H6WRY3	Salmonella_phage	1.5e-97	89.3
WP_046376871.1\|4375808_4376030_+	hypothetical protein	NA	NA	NA	NA
WP_046376873.1\|4376748_4377420_-	hypothetical protein	NA	NA	NA	NA
WP_052742818.1\|4377759_4378587_+	hypothetical protein	A0A0P0J0J7	Acinetobacter_phage	6.6e-24	55.0
WP_077918992.1\|4378739_4380713_+	DNA polymerase	B6SCX5	Bacteriophage	1.9e-21	65.4
WP_157934875.1\|4380736_4380877_-	hypothetical protein	NA	NA	NA	NA
WP_046376875.1\|4380946_4381165_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_046376876.1\|4381161_4381431_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	1.3e-26	65.2
WP_046376877.1\|4381427_4381658_+	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	2.7e-07	40.0
WP_046376878.1\|4381654_4382272_+	HNH endonuclease	A0A1S5SAI9	Streptococcus_phage	2.9e-08	29.4
WP_046376879.1\|4382274_4383672_+	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	1.6e-211	74.2
WP_046376880.1\|4383668_4383920_+	pyocin activator protein PrtN, phage related protein	K7PGU0	Enterobacteria_phage	3.3e-19	56.4

DBSCAN-SWA_10

4409690 : 4428004

Burkholderia_phage(45.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000615248.1\|4409690_4410038_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226440.1\|4410614_4410902_+	membrane protein	Q6QIC8	Burkholderia_phage	5.1e-16	48.1
WP_001270438.1\|4410904_4411510_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	6.5e-61	60.4
WP_000777266.1\|4411522_4411837_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449433.1\|4411996_4412452_+	hypothetical protein	NA	NA	NA	NA
WP_000875314.1\|4412448_4412646_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000729852.1\|4412635_4414063_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000907494.1\|4414062_4414587_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003642.1\|4414638_4414956_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|4414915_4415044_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_046376881.1\|4415140_4417495_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.2e-64	30.4
WP_000271423.1\|4417494_4418448_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001269716.1\|4418447_4418657_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000818154.1\|4418644_4419688_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_000679393.1\|4419697_4420420_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000593182.1\|4420747_4421110_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703633.1\|4421106_4422036_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	1.4e-150	84.1
WP_000632051.1\|4422035_4423583_+	hypothetical protein	B9UDL6	Salmonella_phage	8.5e-49	29.9
WP_001093501.1\|4423746_4424106_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000951725.1\|4424096_4425212_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	6.9e-101	52.2
WP_000359503.1\|4425204_4425837_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_000368192.1\|4425839_4427300_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.2e-76	38.8
WP_000493812.1\|4427302_4428004_+	DUF4376 domain-containing protein	X2KPE1	Enterobacteria_phage	2.1e-23	38.6

DBSCAN-SWA_11

4546634 : 4612415

Salmonella_phage(40.91%)

capsid,lysis,portal,head,tail,protease,plate,integrase,terminase

attL 4576490:4576536|attR 4607469:4607515

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208240.1\|4546634_4547165_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293360.1\|4547174_4548506_+	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	2.4e-44	28.3
WP_000139637.1\|4548572_4549502_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872918.1\|4549594_4550080_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_000051370.1\|4550301_4550541_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084285.1\|4550939_4551785_+	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.0e-15	28.6
WP_000136809.1\|4551805_4553314_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250617.1\|4553425_4554436_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000796293.1\|4554532_4555279_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_000155229.1\|4555384_4555813_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802242.1\|4555913_4556510_+	YiiQ family protein	NA	NA	NA	NA
WP_001216339.1\|4556622_4557390_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_001088053.1\|4557481_4558246_-	epimerase	NA	NA	NA	NA
WP_001543603.1\|4558255_4558546_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_000774146.1\|4558628_4559504_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_000090737.1\|4559532_4560555_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000981826.1\|4560583_4561585_-	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000911133.1\|4561581_4562625_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_001167248.1\|4562618_4564154_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	6.3e-20	30.0
WP_001283049.1\|4564409_4565369_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_000113085.1\|4565455_4567048_+	autoinducer-2 kinase	NA	NA	NA	NA
WP_001173080.1\|4567061_4567412_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000621104.1\|4567501_4567633_-	hypothetical protein	NA	NA	NA	NA
WP_001519915.1\|4567910_4568633_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000557881.1\|4568695_4569736_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_000646510.1\|4569745_4570705_-	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000777320.1\|4570715_4572050_-	MFS transporter	NA	NA	NA	NA
WP_000750762.1\|4572312_4573068_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_000758711.1\|4573168_4574158_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000591793.1\|4574361_4575324_-	6-phosphofructokinase	NA	NA	NA	NA
WP_001077320.1\|4575508_4576411_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4576490:4576536	attL	NA	NA	NA	NA
WP_000933379.1\|4576697_4577114_+	hypothetical protein	S4TTB4	Salmonella_phage	1.8e-33	52.3
WP_000468311.1\|4577148_4577367_-	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	4.7e-38	100.0
WP_000627818.1\|4577444_4578614_-	phage late control D family protein	S4TRX8	Salmonella_phage	1.4e-205	95.6
WP_000978869.1\|4578610_4579096_-\|tail	phage tail protein	S4TUC3	Salmonella_phage	5.9e-81	94.4
WP_000069524.1\|4579107_4581549_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	93.1
WP_085984508.1\|4581541_4581697_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_001029727.1\|4581693_4582029_-\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
WP_001207676.1\|4582091_4582610_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.4e-93	99.4
WP_001279030.1\|4582625_4583813_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	2.0e-223	100.0
WP_000874698.1\|4583947_4584517_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.0e-92	86.8
WP_000104695.1\|4584516_4586259_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.5e-267	97.1
WP_001000070.1\|4586269_4586800_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	1.9e-104	100.0
WP_000246674.1\|4586792_4587701_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.7e-158	98.7
WP_000127150.1\|4587707_4588055_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	2.1e-56	98.3
WP_001093789.1\|4588051_4588693_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	2.4e-98	85.0
WP_046376897.1\|4588769_4590113_-	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_000997680.1\|4590150_4590618_-	phage virion morphogenesis protein	O80313	Escherichia_phage	9.8e-49	67.8
WP_000277800.1\|4590610_4591078_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	2.2e-56	69.0
WP_000849743.1\|4591185_4591599_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	8.4e-36	59.9
WP_000534554.1\|4591595_4592105_-	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
WP_000524754.1\|4592088_4592310_-	hypothetical protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
WP_001100637.1\|4592300_4592504_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
WP_000177982.1\|4592503_4593004_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
WP_000224816.1\|4593101_4593860_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	2.7e-80	67.1
WP_001224307.1\|4593863_4595024_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	2.8e-129	62.5
WP_001074705.1\|4595055_4595919_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	4.5e-100	64.8
WP_000214048.1\|4596083_4597853_+\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	3.2e-286	81.0
WP_000039235.1\|4597852_4598890_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	7.7e-163	78.7
WP_000551923.1\|4599410_4599602_-	hypothetical protein	S4TRZ0	Salmonella_phage	1.1e-27	100.0
WP_000042036.1\|4599600_4600032_+	hypothetical protein	S4TUD6	Salmonella_phage	1.1e-75	100.0
WP_000680929.1\|4600165_4601206_+	Fic family protein	S4TP71	Salmonella_phage	6.3e-197	100.0
WP_000037667.1\|4601202_4601400_-	hypothetical protein	NA	NA	NA	NA
WP_000257582.1\|4601578_4603855_-	replication endonuclease	S4TTC1	Salmonella_phage	0.0e+00	88.0
WP_000027647.1\|4603844_4604120_-	DUF5405 family protein	M1TAP2	Escherichia_phage	7.0e-31	72.5
WP_001113578.1\|4604116_4604341_-	hypothetical protein	A0A0F7LDG9	Escherichia_phage	2.0e-23	75.7
WP_000557712.1\|4604642_4604867_-	DUF2732 family protein	Q7Y4C2	Escherichia_virus	3.4e-23	78.4
WP_001670778.1\|4604930_4605431_-	hypothetical protein	M1SV55	Escherichia_phage	1.8e-85	91.0
WP_001583792.1\|4605600_4605873_-	hypothetical protein	Q1JS36	Enterobacteria_phage	1.0e-42	87.8
WP_001099751.1\|4606009_4606303_+	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	1.6e-36	75.3
WP_000985251.1\|4606372_4607353_+\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	1.5e-179	96.0
WP_001233463.1\|4607537_4608038_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4607469:4607515	attR	NA	NA	NA	NA
WP_001033731.1\|4608188_4608887_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580402.1\|4608883_4610257_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
WP_000338672.1\|4610304_4610508_-	hypothetical protein	NA	NA	NA	NA
WP_000133442.1\|4610628_4611024_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_011233226.1\|4611035_4611788_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000122632.1\|4611794_4612415_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

Anti-CRISPR protein detection

Acr_ID: NZ_CP007559.2|WP_000509731.1|2673581_2674136_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP007559.2|WP_000509731.1|2673581_2674136_-|hypothetical-protein

2673581_2674136_-

184 aa aa

2609182-2683598

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP007559_2	Orphan	2.24\|997215\|33\|NZ_CP007559\|PILER-CR	997215-997247	33	2671134-2671102	0
NZ_CP007559_2	Orphan	2.46\|997204\|32\|NZ_CP007559\|CRISPRCasFinder,CRT	997204-997235	32	2671133-2671102	0

1. spacer 2.24|997215|33|NZ_CP007559|PILER-CR matches to NZ_CP007559 position: 2671134-2671102, mismatch: 0

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcgggcgtgttgctcatc	Protospacer
*********************************

2. spacer 2.46|997204|32|NZ_CP007559|CRISPRCasFinder,CRT matches to NZ_CP007559 position: 2671133-2671102, mismatch: 0

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcgggcgtgttgctcatc	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007559

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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