CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011312	Corynebacterium kutscheri strain DSM 20755 chromosome, complete genome	5 crisprs	csa3,DinG,DEDDh,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	0	3	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011312_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011312_1

901149-901665

TypeI-E

I-E

Consensus_repeat	Method
GGAACATCCCCGCTCGCGCGGGGACAAC	CRISPRCasFinder
GGAACATCCCCGCTCGCGCGGGGACAAC	CRT
GGAACATCCCCGCTCGCGCGGGGACAAC	PILER-CR

8 spacers

cas2,cas6e,cas5,cas7,cse2gr11

The CRISPR arrays of NZ_CP011312_1

>merge|NZ_CP011312|1|901149-901665|CRISPRCasFinder,CRT,PILER-CR
GGAACATCCCTGCTCGCGAGGGGACAACGAGATTGACGACGGGGAGTTGGTCATCTTGGTCGGAACATCCCCGCTCGCGCGGGGACAACACCTAGTGGCCGCCGCTAAAGAAAACGGCAATAGGAACATCCCCGCTCGCGCGGGGACAACTACACCAACAGCCTCAAAAGCATCAGCGATACCGGAACATCCCCGCTCGCGCGGGGACAACAGTTTTAGGGTGTGGGGTAAAAAACAGTCTTGGGGAACATCCCCGCTCGCGCGGGGACAACCAAACAACGGGTTTACGACGCTGGTGTTAATGAGGAACATCCCCGTTCGCGCGGGGACAACCGACTGGGAGACTGTGGGTATCCTGTCGGAGGGGGAACATCCCCGCTCGCGCGGGGACAACAGGCGCATCACAGATCAAGATGTCGCCGACGCCGGAACATCCCCGCTCGCGCGGGGACAACCTTGCGTTCTTCATGAGCATAATTTAACTCAAGGGGAACATCCCCGCTCGCGCGGGGACAAC

>NZ_CP011312|1|1|901149-901665|CRISPRCasFinder
GGAACATCCCTGCTCGCGAGGGGACAAC	GAGATTGACGACGGGGAGTTGGTCATCTTGGTC
GGAACATCCCCGCTCGCGCGGGGACAAC	ACCTAGTGGCCGCCGCTAAAGAAAACGGCAATA
GGAACATCCCCGCTCGCGCGGGGACAAC	TACACCAACAGCCTCAAAAGCATCAGCGATACC
GGAACATCCCCGCTCGCGCGGGGACAAC	AGTTTTAGGGTGTGGGGTAAAAAACAGTCTTGG
GGAACATCCCCGCTCGCGCGGGGACAAC	CAAACAACGGGTTTACGACGCTGGTGTTAATGA
GGAACATCCCCGTTCGCGCGGGGACAAC	CGACTGGGAGACTGTGGGTATCCTGTCGGAGGG
GGAACATCCCCGCTCGCGCGGGGACAAC	AGGCGCATCACAGATCAAGATGTCGCCGACGCC
GGAACATCCCCGCTCGCGCGGGGACAAC	CTTGCGTTCTTCATGAGCATAATTTAACTCAAGG
GGAACATCCCCGCTCGCGCGGGGACAAC

>NZ_CP011312|1|1|901149-901665|CRT
GGAACATCCCTGCTCGCGAGGGGACAAC	GAGATTGACGACGGGGAGTTGGTCATCTTGGTC
GGAACATCCCCGCTCGCGCGGGGACAAC	ACCTAGTGGCCGCCGCTAAAGAAAACGGCAATA
GGAACATCCCCGCTCGCGCGGGGACAAC	TACACCAACAGCCTCAAAAGCATCAGCGATACC
GGAACATCCCCGCTCGCGCGGGGACAAC	AGTTTTAGGGTGTGGGGTAAAAAACAGTCTTGG
GGAACATCCCCGCTCGCGCGGGGACAAC	CAAACAACGGGTTTACGACGCTGGTGTTAATGA
GGAACATCCCCGTTCGCGCGGGGACAAC	CGACTGGGAGACTGTGGGTATCCTGTCGGAGGG
GGAACATCCCCGCTCGCGCGGGGACAAC	AGGCGCATCACAGATCAAGATGTCGCCGACGCC
GGAACATCCCCGCTCGCGCGGGGACAAC	CTTGCGTTCTTCATGAGCATAATTTAACTCAAGG
GGAACATCCCCGCTCGCGCGGGGACAAC

>NZ_CP011312|1|1|901210-901665|PILER-CR
GGAACATCCCCGCTCGCGCGGGGACAAC	ACCTAGTGGCCGCCGCTAAAGAAAACGGCAATA
GGAACATCCCCGCTCGCGCGGGGACAAC	TACACCAACAGCCTCAAAAGCATCAGCGATACC
GGAACATCCCCGCTCGCGCGGGGACAAC	AGTTTTAGGGTGTGGGGTAAAAAACAGTCTTGG
GGAACATCCCCGCTCGCGCGGGGACAAC	CAAACAACGGGTTTACGACGCTGGTGTTAATGA
GGAACATCCCCGTTCGCGCGGGGACAAC	CGACTGGGAGACTGTGGGTATCCTGTCGGAGGG
GGAACATCCCCGCTCGCGCGGGGACAAC	AGGCGCATCACAGATCAAGATGTCGCCGACGCC
GGAACATCCCCGCTCGCGCGGGGACAAC	CTTGCGTTCTTCATGAGCATAATTTAACTCAAGG
GGAACATCCCCGCTCGCGCGGGGACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011312.1\|WP_046439176.1\|907989_908691_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP011312.1\|WP_158407825.1\|904651_904891_+\|EndoU-domain-containing-protein	unknown	unknown	gnl\|CDD\|373068
NZ_CP011312.1\|WP_046441179.1\|894225_895266_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|227119
NZ_CP011312.1\|WP_046439153.1\|889488_891081_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|237436
NZ_CP011312.1\|WP_046439155.1\|891230_892247_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|179579
NZ_CP011312.1\|WP_046439164.1\|898761_900252_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP011312.1\|WP_046439156.1\|892298_893084_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP011312.1\|WP_046439162.1\|897573_898698_-\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|224091
NZ_CP011312.1\|WP_046439165.1\|900391_900979_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_052735865.1\|901903_902926_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|226040
NZ_CP011312.1\|WP_046439179.1\|909869_910502_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP011312.1\|WP_052735981.1\|908687_909821_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP011312.1\|WP_046439158.1\|895271_896384_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|182464
NZ_CP011312.1\|WP_046441177.1\|893086_894037_-\|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_CP011312.1\|WP_046439172.1\|906007_906352_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP011312.1\|WP_046439171.1\|905394_905583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_046439169.1\|904874_905126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_046439160.1\|896675_897473_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP011312.1\|WP_126363835.1\|903870_904569_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_046439174.1\|907330_907990_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050

Protein	Function_ID	Function_description	E-value
NZ_CP011312.1\|WP_046439176.1\|907989_908691_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.94489e-54
NZ_CP011312.1\|WP_158407825.1\|904651_904891_+\|EndoU-domain-containing-protein	gnl\|CDD\|373068	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease. This is a bacterial virion of EndoU nuclease. It is found at C-terminal region of polymorphic toxin proteins.	0.000537486
NZ_CP011312.1\|WP_046441179.1\|894225_895266_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|227119	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism].	7.12878e-74
NZ_CP011312.1\|WP_046439153.1\|889488_891081_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|237436	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional.	0
NZ_CP011312.1\|WP_046439155.1\|891230_892247_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|179579	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP011312.1\|WP_046439164.1\|898761_900252_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP011312.1\|WP_046439156.1\|892298_893084_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.19571e-124
NZ_CP011312.1\|WP_046439162.1\|897573_898698_-\|chorismate-binding-protein	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	2.39549e-114
NZ_CP011312.1\|WP_052735865.1\|901903_902926_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	4.41586e-35
NZ_CP011312.1\|WP_046439179.1\|909869_910502_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	3.65636e-29
NZ_CP011312.1\|WP_052735981.1\|908687_909821_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.38518e-143
NZ_CP011312.1\|WP_046439158.1\|895271_896384_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	6.18909e-85
NZ_CP011312.1\|WP_046441177.1\|893086_894037_-\|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.47726e-61
NZ_CP011312.1\|WP_046439172.1\|906007_906352_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	6.73784e-36
NZ_CP011312.1\|WP_046439160.1\|896675_897473_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	4.87409e-87
NZ_CP011312.1\|WP_046439174.1\|907330_907990_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	6.44302e-65

>NZ_CP011312.1|WP_046439165.1|900391_900979_-|hypothetical-protein
MSVKEFDAGYFYAAELKRFAREIGISVGNRRKFEVEDLIRSFLETGVVPTSQPTLPRNKGEERDRLVLDEQVRNYVDDKETKEFLLDAVRSSSPGIKKKSGQWYWLNDWRRKQQERHAVFTYQDVVDHLSQLMHQEGRLPQVPSARMNNFITDLRADPVNREMTRDEVQQEWRWLKKQPGPKTYAEYKRRKRQQD
>NZ_CP011312.1|WP_046439164.1|898761_900252_+|glutamate--tRNA-ligase
MVAMTEVRVRFCPSPTGTPHVGMVRTALFNWAHARHTGGKLVFRIEDTDAARDSEESYQAIIDSLTWLGMDWDEGVVVGGPHEPYRQSQRMDIYAEVLEKLKAAGFVYPAYSTAEEVEQRHKAAGRDPKLGYDNFDRELSQEQIAAFEAEGRQPVWRLRMPDKDWKWTDLVRGEIEFKNATQPDYVVARSNGAPLYTLVNPVDDALMGITHVLRGEDLLPSTPRQLALYEALIAIGVAKQTPEFGHLPFVMGEGNKKLSKRDPQSNLFNHRDNGIIPEGMLNYLALLGWSLSSEKDIFSMDELIENFQVENVLGNPARFDQKKLEAINADHIRLLDLDDFTTRLREYLSEYYDFPEDYPAEKFALAAELVQTRIKTLSEAWGLLSFLVTEDEDLLFDEKSAKKNLKETAIEPLEVGIAALEAVDDFSTANIEAALSKALIEDLGLKPRVAYGALRVGISGQAVSPPLFESMELLGKESTLKRLRSAREKTPFSTTE
>NZ_CP011312.1|WP_046439162.1|897573_898698_-|chorismate-binding-protein
MSSSPPASAPDFLLSRGHGSVRTQGAQQHLDNIDDAVDLLRAKKVDMVVGALAFRRDHKAALTVPVSIIREDGPLEPHAYYRHGSGAILRAQLAKLIPDIEEHHIRVQAAIDTISRSELKKVVLARAIDIDFSPPVDPRLVAARLIDLSFTKDGFIADLSPAGEDFLGHTLVGSSPEVLIKKQGSTISAYPLAGSAARSMIPREDKLRGEELRRSSKDLVEHQFVVEHLRRLLIPLCSTLTIPDYPELTCTNEMWHLATPVVGTLKDPHYTALELARLIHPTPAICGTPTDAAEELIALAEGDRRFYAGAVGWCDNTGDGEYMVAIRCAEINAEGTHARAWAGGGIVAESDAHAEVAETSAKLRTIAKALGLKI
>NZ_CP011312.1|WP_046439160.1|896675_897473_+|fumarylacetoacetate-hydrolase-family-protein
MRFGRIATPDGLSFCVVEGKQGQEVCRAIAGTPFEEPVFTGKEYKLSEVRVLAPMLPSKIVAVGRNYADHVAEVFQKSAEHLPPTLFLKPPTAVVGPEAAIKIPPFATNVEFEGELAVVIGRPCKNVKAADWKSVVLGFTIINDVSSRDLQFSDGQWARAKGIDTFAPLGPWIQTDIDSIDTSNLPIKAHLTHDGVTETKQDSNSNQMIKTVGECIEMITQSMTLLPGDVICTGSPAGTAEMVPGDYIEIEIPGIGKLGNPVEAG
>NZ_CP011312.1|WP_046439158.1|895271_896384_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MISSAERGHAPATTRRRGTSGRRKALGLLALMLSLTLLCICSMVLGAKATNLATINQAWPYALDILFGHTNVPQLITNGMESDLADTAGIIASLRIPRTILSILIGIALGLAGAVIQGLTRNPLADPGMLGVSSGAALFVAAGIFLFGLNTITAHLWLAFLGAGLASLLVFGISSTSVGKGDTLGLVLAGAALSASFSAITSGIVYIDPNALDTLRFWQAGSVTGRGFDIIIPALVPILIGAILALLSGPTLNVLGLGAETAQALGTNVVRANFMGLITITLLAGAATAAAGPIGFIGLMVPHIARSITGPDYRWILPYSALTGAVTLLAADIIGRLVMRPGELQAGIVIALLGAPVFIWLVRNRKMVSL
>NZ_CP011312.1|WP_046441179.1|894225_895266_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MKNLSLGSISFLVHRRTSLFTAFILIACFVVWLISLLTGDFPMSFNQIIAVLSGGGTPLERTVIIQWRLARALVAVTIGAALGISGAITQRIARNGLASPDILGISRGATCAAVALMVFNGGASSAITTYVGIPLAAVIGGLFTAAVIWLLSVRSGLDMFRLVLVGIGVNAALQAVITYMLAATDLNTAAAAKVWMIGTINGRTFEHLWPTLIALIIALIVLIRISIHLPILELGTDASLGLGVPLKRVNTLLLIISVALAAITVSAVGPVGFVAFVAPQIAARLAQVGAPPITLSAAMGGFLLISSDLLARSLFPWEVPVGIVTSALGGPFLIWLLLRQSKIHSR
>NZ_CP011312.1|WP_046441177.1|893086_894037_-|iron-siderophore-ABC-transporter-substrate-binding-protein
MRKNIHQIFTHTTTRRGFLGLALAGGAAALAACSNSGSSTNSSSTSSSAAKSSTTAANEQRIVVLNTGQLDNMLTLGILPVGAAKAKGGQVINEYLRDAFGSDFDLDSITDCGVRANPELETIASLNPTLICANDRTDEAILNQLKTIAPVVTGSGGGENWKKDFVTIAEAVGKKSEAEALIASYEDECSTFGNSLTTVPTVSFLRTKDDAFQVYGVNSMAGTVAADCKLNRPSSQQFTDTAGVNISAEQLSEADADWLFYGIQDGATDPTTTSTWSTLNAVNNNQAVEVDYESWYTNASYLSATIIRDSLKEHLA
>NZ_CP011312.1|WP_046439156.1|892298_893084_-|ABC-transporter-ATP-binding-protein
MLESARLRATNISVGYDSTVINKDVTVDIPNGKVTTIIGANGCGKSTLLRGLSRLLPLQAGSVTLDGQELSSYKHKELARKISMLPQSPTAPPGLTVADLVARGRHPHQTWLQQWSPSHSEAVDKALELTGISDFAERSADSLSGGQRQRVWISMVLAQDTDIVFLDEPTTYLDLAHSIEVLDLVRTLNKTQGKTIVMVLHDLNLAARYSDELIIMQKGQLAAHGSPKDILNETALFDAFGLRSRIIEDPCAGGPLIVPEA
>NZ_CP011312.1|WP_046439155.1|891230_892247_+|3-isopropylmalate-dehydrogenase
MKLAVIGGDGIGPEVTAEALKVLCSVRDDIEITDYDLGARRYLKNGELLTEADLASLKEHDAILLGAIGAPDQVPPGILERGLLLKMRFALDHHINLRPAKLYPSTQSPLTNPGDIDFVVVREGTEGLYCGNGGVLRKGTAQEIASEVSQNTRYGVERVVRDAFTRAQHRRKHLTLVHKTNVLVNAGSLWHRTVEEVSQEYPEVTVEYNHIDAATIYLVTDPGRYDVIVTDNLFGDILTDLAGAITGGIGLAASGNIDATGTYPSMFEPVHGSAPDIAGKGIADPTAAILSAAMLLHHLGDTAHAQRIEAAVLEEISTRSGCVSTTAIGDRVVDLLKK
>NZ_CP011312.1|WP_046439153.1|889488_891081_+|phosphoglycerate-dehydrogenase
MSPHDRPVVLIADKLAQSTVDALGDAVEVQWVDGSNRVELLGAVPEADALLVRSATTVDAEVLAAAAKLKIIGRAGVGLDNVDIAAATARGVMVVNAPTSNIHSACEHAISLLLATARQIPAADASLRERQWKRSHFLGVEIFGKTIGIVGFGHIGQLFAQRLAAFETEIIAFDPYANPARAGQLGVELVELEELMARADFVTIHLPKTKETTHMFNAELLAQAKPGQIIINAARGGLVDEQALAEAIISGRIRGAGFDVFETEPCTDSPLFNLPEVVVTPHLGASTLEAQDRAGTDVASSVLKALAGEFVADAVNVSGGRVGEEVARWLDLVRKLGLVAGRLLGAAPVALEVEARGELSTEDIESLGLSALRGLFSGFVEESVTFVNAPRIAEERGVELTVSSTSESVTHRSVVEVKVIGSEGETISVVGALTGLERVEKVVRINGRGVDLRATGRNLFFEYTDVPGALGVVGSELGNANINIEAAALTQAIKGDHAILILRVEREVSSELVEKIAARLGATAIQVDLG
>NZ_CP011312.1|WP_052735865.1|901903_902926_+|prolyl-oligopeptidase-family-serine-peptidase
MNIFFPLRCFIHALNAAVLSIVLILSVIPVVSAQEVADSILEESEENYVQDNSVSVLLEGAGDVAEAEIIEAPVEDAVTVLDVPELPVVAGQTMSIETLTADAMSRRYLLSVPVNYDSGIAVPVLFAFGGWNNSPEVFRDYSRLNEIAGEEAIIVYPEGVGHAWAGAPYALTSQEQDINFVRQIIDEVAHHYTVDRERIYATGMSNGGGMAALLGCHVPELFAGIAMVSGAYYTPVNQNCSSISIPSLFIHGTDDDVVHYEGGQRHEAYYFPVAEMLASYAERNACTNTPPRTTFVGVGVERQEFENCAAETQHIKALGQAHIWNTEPNAAWEVWSFLAR
>NZ_CP011312.1|WP_126363835.1|903870_904569_+|hypothetical-protein
MLYIWSEHPRSRGDNYLFLTRSLDDTLKGLEYPEVADPVGFVQAQKAFRRAMWVKDLDSLAEREKAKRKLQGVLNRLVVQPARDTVGLGVLQAGTAYARVAEPGACAFCLMLAARGEVYSDSTVFGDTGRYHDNCRCLAIEVKNKSQLPRLNRDLADLWEETRQGHGGTLEFKDWRHTITAMREQYGGDTDWPKLKYARIPTYRYGGKSVVFEGEEITPFEENAGACATWVA
>NZ_CP011312.1|WP_158407825.1|904651_904891_+|EndoU-domain-containing-protein
MSKFPKAWTDQKIVDAVRDTLENPSFYFAKDTRRAVWREIDGVLIEVSYDILPGGKVVFNTAHPAKTIKKKAKRNANRS
>NZ_CP011312.1|WP_046439169.1|904874_905126_+|hypothetical-protein
MLTDLEIYRRVDAMIPVEVDRDDAEHELLHCEYEDAIADLLTEAFLSGKLPQNAIDFVSSEYKHGTVAITLEYIAAQMKQSAA
>NZ_CP011312.1|WP_046439171.1|905394_905583_-|hypothetical-protein
MLGSHTRARGFDGFALFASLKLSDTLQRFIKLGLAFLLLLFKLRCKRLNLFELCAITSGFAA
>NZ_CP011312.1|WP_046439172.1|906007_906352_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MITIVLTACPAGLRGQLNRWLFEISAGVFVGHVSTRIRDRLWSIIVSELKNGRAIMAFSTSKNETGFEIKVHRHDWEIIDSDGIPLVLRPTRSNPESPLRKGWSKASQRRRKRK
>NZ_CP011312.1|WP_046439174.1|907330_907990_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTFLSAIDLNPYRRKTALFASNPRTLHAAVMNCFSPDLHAKEKRILWRLDQSTDRISLLVLSENRPCFEHIQEQAGWSNQPSSKIRDYNPLLEGLQPGQQYRFRLAANPTRIVTQSDGKKIRAAHVTVKHQKQWLRDKITAHGFSIYNGNTTDDETEMLLVTRRDRLRFNREKARVTLNRVQFDGVLTVESPELLRNAMLNGIGRGKGYGMGLLTLSAS
>NZ_CP011312.1|WP_046439176.1|907989_908691_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSVLLLKLAGPLQSWGDHSRFMHRDTRREPTKSGVIGLLAAAQGRLRTDTITDLAELRFGVRTDQIGTVISDFQTEIDWRNREAEPLTHRDYLADAIFVAAVEGSTSVITELAEAVKSPKFPLFLGRRACPPSGQLLIGIKENSLVECLENEKWHASCWYKKKQPKKVQLRLSYDAHGDDPISEMVSDVPKSFDLKNREYGVRAVTHRFTSDIDNPKGWEMKDHNPFTLLGDA
>NZ_CP011312.1|WP_052735981.1|908687_909821_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MFIDIHILQTIPPSNVNRDDTGAPKTSIYGGVRRARVSSQAWKKATRESFKEYLDATELGERTFYAVDRIAKSIIESRPDLADKAVSLAEEIFKVAKIKISPEKKKNNDETASPKSVTSYLLFLSRIQISNLAQLAIQAHDTGESFNRKTINKIIQSDNSIDIALFGRMITDSPDLNVDAACQVSHAFSVHPAEIEFDYFTASDDNKENDTSGAGMIGTVEFVAPTHYRYATINTEGLISNLDSVEAAARATEAFLRSFILSMPTGKMNTFANRTRPELVLVQIRQDQPVNLAESFEKAITTTTGRMAKATIELASSAKNADETYGSAAKESFYLATNNADTPETRAELDAIGTHVTFDDLISLVGKAVRSRAENNA
>NZ_CP011312.1|WP_046439179.1|909869_910502_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTSSISNKIASHVYSKIGPLQTNYLADYSSAKAELAELRRSANNPKASFKIWSLVFDNLDEELIGKGDRFNRAERALLTTFQLYAIHQQSSNKPMHVTAKTTGAEQSFPQGLGTAVRRIANPNDSDDWEQAILRRFSSVVNASTFEGTKHHLRGLIQIFRAKDIPLNYGLLAKDLYRLQFPEAVQSVHLRWARELYQRSPETSKTAEVSA

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Crispr_ID: NZ_CP011312_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011312_2

903370-903443

TypeI-E

Consensus_repeat	Method
ATCCCCGCTCGCGCGGGGACAAC	CRISPRCasFinder

1 spacers

cas2,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_CP011312_2

>merge|NZ_CP011312|2|903370-903443|CRISPRCasFinder
ATCCCCGCTCGCGCGGGGACAACGAAGACCTAGTACATTAGATACAGGAACATCCCAGCTCGCGCGGGGACAAC

>NZ_CP011312|2|2|903370-903443|CRISPRCasFinder
ATCCCCGCTCGCGCGGGGACAAC	GAAGACCTAGTACATTAGATACAGGAAC
ATCCCAGCTCGCGCGGGGACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011312.1\|WP_046439176.1\|907989_908691_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP011312.1\|WP_158407825.1\|904651_904891_+\|EndoU-domain-containing-protein	unknown	unknown	gnl\|CDD\|373068
NZ_CP011312.1\|WP_046441179.1\|894225_895266_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|227119
NZ_CP011312.1\|WP_046439155.1\|891230_892247_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|179579
NZ_CP011312.1\|WP_046439164.1\|898761_900252_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP011312.1\|WP_046439156.1\|892298_893084_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP011312.1\|WP_046439162.1\|897573_898698_-\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|224091
NZ_CP011312.1\|WP_046439165.1\|900391_900979_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_052735865.1\|901903_902926_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|226040
NZ_CP011312.1\|WP_046439179.1\|909869_910502_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP011312.1\|WP_052735981.1\|908687_909821_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP011312.1\|WP_046439158.1\|895271_896384_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|182464
NZ_CP011312.1\|WP_052735868.1\|910482_912132_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP011312.1\|WP_046441177.1\|893086_894037_-\|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_CP011312.1\|WP_046439172.1\|906007_906352_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP011312.1\|WP_046439171.1\|905394_905583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_046439169.1\|904874_905126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_046439160.1\|896675_897473_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP011312.1\|WP_126363835.1\|903870_904569_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_046439174.1\|907330_907990_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050

Protein	Function_ID	Function_description	E-value
NZ_CP011312.1\|WP_046439176.1\|907989_908691_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.94489e-54
NZ_CP011312.1\|WP_158407825.1\|904651_904891_+\|EndoU-domain-containing-protein	gnl\|CDD\|373068	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease. This is a bacterial virion of EndoU nuclease. It is found at C-terminal region of polymorphic toxin proteins.	0.000537486
NZ_CP011312.1\|WP_046441179.1\|894225_895266_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|227119	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism].	7.12878e-74
NZ_CP011312.1\|WP_046439155.1\|891230_892247_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|179579	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP011312.1\|WP_046439164.1\|898761_900252_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP011312.1\|WP_046439156.1\|892298_893084_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.19571e-124
NZ_CP011312.1\|WP_046439162.1\|897573_898698_-\|chorismate-binding-protein	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	2.39549e-114
NZ_CP011312.1\|WP_052735865.1\|901903_902926_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	4.41586e-35
NZ_CP011312.1\|WP_046439179.1\|909869_910502_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	3.65636e-29
NZ_CP011312.1\|WP_052735981.1\|908687_909821_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.38518e-143
NZ_CP011312.1\|WP_046439158.1\|895271_896384_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	6.18909e-85
NZ_CP011312.1\|WP_052735868.1\|910482_912132_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	4.81542e-108
NZ_CP011312.1\|WP_046441177.1\|893086_894037_-\|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.47726e-61
NZ_CP011312.1\|WP_046439172.1\|906007_906352_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	6.73784e-36
NZ_CP011312.1\|WP_046439160.1\|896675_897473_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	4.87409e-87
NZ_CP011312.1\|WP_046439174.1\|907330_907990_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	6.44302e-65

>NZ_CP011312.1|WP_052735865.1|901903_902926_+|prolyl-oligopeptidase-family-serine-peptidase
MNIFFPLRCFIHALNAAVLSIVLILSVIPVVSAQEVADSILEESEENYVQDNSVSVLLEGAGDVAEAEIIEAPVEDAVTVLDVPELPVVAGQTMSIETLTADAMSRRYLLSVPVNYDSGIAVPVLFAFGGWNNSPEVFRDYSRLNEIAGEEAIIVYPEGVGHAWAGAPYALTSQEQDINFVRQIIDEVAHHYTVDRERIYATGMSNGGGMAALLGCHVPELFAGIAMVSGAYYTPVNQNCSSISIPSLFIHGTDDDVVHYEGGQRHEAYYFPVAEMLASYAERNACTNTPPRTTFVGVGVERQEFENCAAETQHIKALGQAHIWNTEPNAAWEVWSFLAR
>NZ_CP011312.1|WP_046439165.1|900391_900979_-|hypothetical-protein
MSVKEFDAGYFYAAELKRFAREIGISVGNRRKFEVEDLIRSFLETGVVPTSQPTLPRNKGEERDRLVLDEQVRNYVDDKETKEFLLDAVRSSSPGIKKKSGQWYWLNDWRRKQQERHAVFTYQDVVDHLSQLMHQEGRLPQVPSARMNNFITDLRADPVNREMTRDEVQQEWRWLKKQPGPKTYAEYKRRKRQQD
>NZ_CP011312.1|WP_046439164.1|898761_900252_+|glutamate--tRNA-ligase
MVAMTEVRVRFCPSPTGTPHVGMVRTALFNWAHARHTGGKLVFRIEDTDAARDSEESYQAIIDSLTWLGMDWDEGVVVGGPHEPYRQSQRMDIYAEVLEKLKAAGFVYPAYSTAEEVEQRHKAAGRDPKLGYDNFDRELSQEQIAAFEAEGRQPVWRLRMPDKDWKWTDLVRGEIEFKNATQPDYVVARSNGAPLYTLVNPVDDALMGITHVLRGEDLLPSTPRQLALYEALIAIGVAKQTPEFGHLPFVMGEGNKKLSKRDPQSNLFNHRDNGIIPEGMLNYLALLGWSLSSEKDIFSMDELIENFQVENVLGNPARFDQKKLEAINADHIRLLDLDDFTTRLREYLSEYYDFPEDYPAEKFALAAELVQTRIKTLSEAWGLLSFLVTEDEDLLFDEKSAKKNLKETAIEPLEVGIAALEAVDDFSTANIEAALSKALIEDLGLKPRVAYGALRVGISGQAVSPPLFESMELLGKESTLKRLRSAREKTPFSTTE
>NZ_CP011312.1|WP_046439162.1|897573_898698_-|chorismate-binding-protein
MSSSPPASAPDFLLSRGHGSVRTQGAQQHLDNIDDAVDLLRAKKVDMVVGALAFRRDHKAALTVPVSIIREDGPLEPHAYYRHGSGAILRAQLAKLIPDIEEHHIRVQAAIDTISRSELKKVVLARAIDIDFSPPVDPRLVAARLIDLSFTKDGFIADLSPAGEDFLGHTLVGSSPEVLIKKQGSTISAYPLAGSAARSMIPREDKLRGEELRRSSKDLVEHQFVVEHLRRLLIPLCSTLTIPDYPELTCTNEMWHLATPVVGTLKDPHYTALELARLIHPTPAICGTPTDAAEELIALAEGDRRFYAGAVGWCDNTGDGEYMVAIRCAEINAEGTHARAWAGGGIVAESDAHAEVAETSAKLRTIAKALGLKI
>NZ_CP011312.1|WP_046439160.1|896675_897473_+|fumarylacetoacetate-hydrolase-family-protein
MRFGRIATPDGLSFCVVEGKQGQEVCRAIAGTPFEEPVFTGKEYKLSEVRVLAPMLPSKIVAVGRNYADHVAEVFQKSAEHLPPTLFLKPPTAVVGPEAAIKIPPFATNVEFEGELAVVIGRPCKNVKAADWKSVVLGFTIINDVSSRDLQFSDGQWARAKGIDTFAPLGPWIQTDIDSIDTSNLPIKAHLTHDGVTETKQDSNSNQMIKTVGECIEMITQSMTLLPGDVICTGSPAGTAEMVPGDYIEIEIPGIGKLGNPVEAG
>NZ_CP011312.1|WP_046439158.1|895271_896384_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MISSAERGHAPATTRRRGTSGRRKALGLLALMLSLTLLCICSMVLGAKATNLATINQAWPYALDILFGHTNVPQLITNGMESDLADTAGIIASLRIPRTILSILIGIALGLAGAVIQGLTRNPLADPGMLGVSSGAALFVAAGIFLFGLNTITAHLWLAFLGAGLASLLVFGISSTSVGKGDTLGLVLAGAALSASFSAITSGIVYIDPNALDTLRFWQAGSVTGRGFDIIIPALVPILIGAILALLSGPTLNVLGLGAETAQALGTNVVRANFMGLITITLLAGAATAAAGPIGFIGLMVPHIARSITGPDYRWILPYSALTGAVTLLAADIIGRLVMRPGELQAGIVIALLGAPVFIWLVRNRKMVSL
>NZ_CP011312.1|WP_046441179.1|894225_895266_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MKNLSLGSISFLVHRRTSLFTAFILIACFVVWLISLLTGDFPMSFNQIIAVLSGGGTPLERTVIIQWRLARALVAVTIGAALGISGAITQRIARNGLASPDILGISRGATCAAVALMVFNGGASSAITTYVGIPLAAVIGGLFTAAVIWLLSVRSGLDMFRLVLVGIGVNAALQAVITYMLAATDLNTAAAAKVWMIGTINGRTFEHLWPTLIALIIALIVLIRISIHLPILELGTDASLGLGVPLKRVNTLLLIISVALAAITVSAVGPVGFVAFVAPQIAARLAQVGAPPITLSAAMGGFLLISSDLLARSLFPWEVPVGIVTSALGGPFLIWLLLRQSKIHSR
>NZ_CP011312.1|WP_046441177.1|893086_894037_-|iron-siderophore-ABC-transporter-substrate-binding-protein
MRKNIHQIFTHTTTRRGFLGLALAGGAAALAACSNSGSSTNSSSTSSSAAKSSTTAANEQRIVVLNTGQLDNMLTLGILPVGAAKAKGGQVINEYLRDAFGSDFDLDSITDCGVRANPELETIASLNPTLICANDRTDEAILNQLKTIAPVVTGSGGGENWKKDFVTIAEAVGKKSEAEALIASYEDECSTFGNSLTTVPTVSFLRTKDDAFQVYGVNSMAGTVAADCKLNRPSSQQFTDTAGVNISAEQLSEADADWLFYGIQDGATDPTTTSTWSTLNAVNNNQAVEVDYESWYTNASYLSATIIRDSLKEHLA
>NZ_CP011312.1|WP_046439156.1|892298_893084_-|ABC-transporter-ATP-binding-protein
MLESARLRATNISVGYDSTVINKDVTVDIPNGKVTTIIGANGCGKSTLLRGLSRLLPLQAGSVTLDGQELSSYKHKELARKISMLPQSPTAPPGLTVADLVARGRHPHQTWLQQWSPSHSEAVDKALELTGISDFAERSADSLSGGQRQRVWISMVLAQDTDIVFLDEPTTYLDLAHSIEVLDLVRTLNKTQGKTIVMVLHDLNLAARYSDELIIMQKGQLAAHGSPKDILNETALFDAFGLRSRIIEDPCAGGPLIVPEA
>NZ_CP011312.1|WP_046439155.1|891230_892247_+|3-isopropylmalate-dehydrogenase
MKLAVIGGDGIGPEVTAEALKVLCSVRDDIEITDYDLGARRYLKNGELLTEADLASLKEHDAILLGAIGAPDQVPPGILERGLLLKMRFALDHHINLRPAKLYPSTQSPLTNPGDIDFVVVREGTEGLYCGNGGVLRKGTAQEIASEVSQNTRYGVERVVRDAFTRAQHRRKHLTLVHKTNVLVNAGSLWHRTVEEVSQEYPEVTVEYNHIDAATIYLVTDPGRYDVIVTDNLFGDILTDLAGAITGGIGLAASGNIDATGTYPSMFEPVHGSAPDIAGKGIADPTAAILSAAMLLHHLGDTAHAQRIEAAVLEEISTRSGCVSTTAIGDRVVDLLKK
>NZ_CP011312.1|WP_126363835.1|903870_904569_+|hypothetical-protein
MLYIWSEHPRSRGDNYLFLTRSLDDTLKGLEYPEVADPVGFVQAQKAFRRAMWVKDLDSLAEREKAKRKLQGVLNRLVVQPARDTVGLGVLQAGTAYARVAEPGACAFCLMLAARGEVYSDSTVFGDTGRYHDNCRCLAIEVKNKSQLPRLNRDLADLWEETRQGHGGTLEFKDWRHTITAMREQYGGDTDWPKLKYARIPTYRYGGKSVVFEGEEITPFEENAGACATWVA
>NZ_CP011312.1|WP_158407825.1|904651_904891_+|EndoU-domain-containing-protein
MSKFPKAWTDQKIVDAVRDTLENPSFYFAKDTRRAVWREIDGVLIEVSYDILPGGKVVFNTAHPAKTIKKKAKRNANRS
>NZ_CP011312.1|WP_046439169.1|904874_905126_+|hypothetical-protein
MLTDLEIYRRVDAMIPVEVDRDDAEHELLHCEYEDAIADLLTEAFLSGKLPQNAIDFVSSEYKHGTVAITLEYIAAQMKQSAA
>NZ_CP011312.1|WP_046439171.1|905394_905583_-|hypothetical-protein
MLGSHTRARGFDGFALFASLKLSDTLQRFIKLGLAFLLLLFKLRCKRLNLFELCAITSGFAA
>NZ_CP011312.1|WP_046439172.1|906007_906352_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MITIVLTACPAGLRGQLNRWLFEISAGVFVGHVSTRIRDRLWSIIVSELKNGRAIMAFSTSKNETGFEIKVHRHDWEIIDSDGIPLVLRPTRSNPESPLRKGWSKASQRRRKRK
>NZ_CP011312.1|WP_046439174.1|907330_907990_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTFLSAIDLNPYRRKTALFASNPRTLHAAVMNCFSPDLHAKEKRILWRLDQSTDRISLLVLSENRPCFEHIQEQAGWSNQPSSKIRDYNPLLEGLQPGQQYRFRLAANPTRIVTQSDGKKIRAAHVTVKHQKQWLRDKITAHGFSIYNGNTTDDETEMLLVTRRDRLRFNREKARVTLNRVQFDGVLTVESPELLRNAMLNGIGRGKGYGMGLLTLSAS
>NZ_CP011312.1|WP_046439176.1|907989_908691_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSVLLLKLAGPLQSWGDHSRFMHRDTRREPTKSGVIGLLAAAQGRLRTDTITDLAELRFGVRTDQIGTVISDFQTEIDWRNREAEPLTHRDYLADAIFVAAVEGSTSVITELAEAVKSPKFPLFLGRRACPPSGQLLIGIKENSLVECLENEKWHASCWYKKKQPKKVQLRLSYDAHGDDPISEMVSDVPKSFDLKNREYGVRAVTHRFTSDIDNPKGWEMKDHNPFTLLGDA
>NZ_CP011312.1|WP_052735981.1|908687_909821_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MFIDIHILQTIPPSNVNRDDTGAPKTSIYGGVRRARVSSQAWKKATRESFKEYLDATELGERTFYAVDRIAKSIIESRPDLADKAVSLAEEIFKVAKIKISPEKKKNNDETASPKSVTSYLLFLSRIQISNLAQLAIQAHDTGESFNRKTINKIIQSDNSIDIALFGRMITDSPDLNVDAACQVSHAFSVHPAEIEFDYFTASDDNKENDTSGAGMIGTVEFVAPTHYRYATINTEGLISNLDSVEAAARATEAFLRSFILSMPTGKMNTFANRTRPELVLVQIRQDQPVNLAESFEKAITTTTGRMAKATIELASSAKNADETYGSAAKESFYLATNNADTPETRAELDAIGTHVTFDDLISLVGKAVRSRAENNA
>NZ_CP011312.1|WP_046439179.1|909869_910502_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTSSISNKIASHVYSKIGPLQTNYLADYSSAKAELAELRRSANNPKASFKIWSLVFDNLDEELIGKGDRFNRAERALLTTFQLYAIHQQSSNKPMHVTAKTTGAEQSFPQGLGTAVRRIANPNDSDDWEQAILRRFSSVVNASTFEGTKHHLRGLIQIFRAKDIPLNYGLLAKDLYRLQFPEAVQSVHLRWARELYQRSPETSKTAEVSA
>NZ_CP011312.1|WP_052735868.1|910482_912132_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MESHFNLLDEKWIKVIDINGIEAEISIHELLSNSSHYQAFANELPTINFAILRLLLAILEAALLEEYEDDELVEEWKNIWETGSLPIDIIDDYLTTYRHRFYLIDETYPFLQVPTLATAKNEWKKLDLIVIDSPGEGSLFTRRTANVLDLAEAARWLVHANSFDFSGIKSGAVGDDRVKGGKGYPQGIGWCGWLGGTTIIGRNLFETLMLNFVAEGDFSSLDKPIWEEEPLTAAARPYAQPHGQKGLFTWPQRRIRLKIEENKATGVLVCNGDPIDYTNQLAHENMTAWRYSEPQSKKAKKPVYMPRALQSEKMLWQGLSTLLPSDNAELVDKTGILKFKPAKNVEWVGRLIERGVLPYDYRIQLDVVTIEYGTQNASVEKVLHDSLRMSAALASIDQQELQSWVQDAVSYADKTALAVTNLAADLIIAEGYSGDKIAKKRKQTYAKMLAAIDPQFRNWLSQLSIDSDGVTLLQEWIMYLRRLGNQTAQQLLQTTSSKAWSGRKHNDHIVNVGTAASRFSFSLAKILPTTNPLQSSNNQKGDSHDIINK

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Crispr_ID: NZ_CP011312_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011312_3

905753-905963

TypeI-E

I-E

Consensus_repeat	Method
GGAACATCCCCGCTCGCGCGGGGACAAC	PILER-CR
GGAACATCCCCGCTCGCGCGGGGACAAC	CRISPRCasFinder
GGAACATCCCCGCTCGCGCGGGGACAAC	CRT

3 spacers

cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP011312_3

>merge|NZ_CP011312|3|905753-905963|PILER-CR,CRISPRCasFinder,CRT
GGAACATCCCCGCTCGCGCGGGGACAACCGGTCAGTATCGACAGGCTTGAAGGGCGCGCTCGGAACATCCCCGCTCGCGCGGGGACAACTTTTTTCTCTTGTGATGGTTTTTCGATGATGCTGGAACATCCCCGCTCGCGCGGGGACAACAACACCCCCTAGGAAAACACCTAGGGGGTTCGGGGAACATCCCCGCTCGCGCGGGGACAAC

>NZ_CP011312|3|2|905753-905963|PILER-CR
GGAACATCCCCGCTCGCGCGGGGACAAC	CGGTCAGTATCGACAGGCTTGAAGGGCGCGCTC
GGAACATCCCCGCTCGCGCGGGGACAAC	TTTTTTCTCTTGTGATGGTTTTTCGATGATGCT
GGAACATCCCCGCTCGCGCGGGGACAAC	AACACCCCCTAGGAAAACACCTAGGGGGTTCGG
GGAACATCCCCGCTCGCGCGGGGACAAC

>NZ_CP011312|3|3|905753-905963|CRISPRCasFinder
GGAACATCCCCGCTCGCGCGGGGACAAC	CGGTCAGTATCGACAGGCTTGAAGGGCGCGCTC
GGAACATCCCCGCTCGCGCGGGGACAAC	TTTTTTCTCTTGTGATGGTTTTTCGATGATGCT
GGAACATCCCCGCTCGCGCGGGGACAAC	AACACCCCCTAGGAAAACACCTAGGGGGTTCGG
GGAACATCCCCGCTCGCGCGGGGACAAC

>NZ_CP011312|3|2|905753-905963|CRT
GGAACATCCCCGCTCGCGCGGGGACAAC	CGGTCAGTATCGACAGGCTTGAAGGGCGCGCTC
GGAACATCCCCGCTCGCGCGGGGACAAC	TTTTTTCTCTTGTGATGGTTTTTCGATGATGCT
GGAACATCCCCGCTCGCGCGGGGACAAC	AACACCCCCTAGGAAAACACCTAGGGGGTTCGG
GGAACATCCCCGCTCGCGCGGGGACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011312.1\|WP_046439176.1\|907989_908691_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP011312.1\|WP_158407825.1\|904651_904891_+\|EndoU-domain-containing-protein	unknown	unknown	gnl\|CDD\|373068
NZ_CP011312.1\|WP_052735869.1\|915615_916161_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP011312.1\|WP_046439180.1\|912225_915087_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP011312.1\|WP_046439162.1\|897573_898698_-\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|224091
NZ_CP011312.1\|WP_046439164.1\|898761_900252_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP011312.1\|WP_052735868.1\|910482_912132_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP011312.1\|WP_046439179.1\|909869_910502_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP011312.1\|WP_046439165.1\|900391_900979_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_052735865.1\|901903_902926_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|226040
NZ_CP011312.1\|WP_052735981.1\|908687_909821_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP011312.1\|WP_046439181.1\|917015_919208_-\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP011312.1\|WP_046439158.1\|895271_896384_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|182464
NZ_CP011312.1\|WP_046439174.1\|907330_907990_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP011312.1\|WP_046439172.1\|906007_906352_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP011312.1\|WP_046439171.1\|905394_905583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_046439169.1\|904874_905126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_083966411.1\|916117_916522_+\|TipAS-antibiotic-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|377906
NZ_CP011312.1\|WP_046439160.1\|896675_897473_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP011312.1\|WP_126363835.1\|903870_904569_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011312.1\|WP_046439176.1\|907989_908691_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.94489e-54
NZ_CP011312.1\|WP_052735869.1\|915615_916161_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	1.94311e-32
NZ_CP011312.1\|WP_046439180.1\|912225_915087_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.18742e-75
NZ_CP011312.1\|WP_046439162.1\|897573_898698_-\|chorismate-binding-protein	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	2.39549e-114
NZ_CP011312.1\|WP_046439164.1\|898761_900252_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP011312.1\|WP_052735868.1\|910482_912132_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	4.81542e-108
NZ_CP011312.1\|WP_046439179.1\|909869_910502_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	3.65636e-29
NZ_CP011312.1\|WP_158407825.1\|904651_904891_+\|EndoU-domain-containing-protein	gnl\|CDD\|373068	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease. This is a bacterial virion of EndoU nuclease. It is found at C-terminal region of polymorphic toxin proteins.	0.000537486
NZ_CP011312.1\|WP_052735865.1\|901903_902926_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	4.41586e-35
NZ_CP011312.1\|WP_052735981.1\|908687_909821_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.38518e-143
NZ_CP011312.1\|WP_046439181.1\|917015_919208_-\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	2.08958e-77
NZ_CP011312.1\|WP_046439158.1\|895271_896384_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	6.18909e-85
NZ_CP011312.1\|WP_046439174.1\|907330_907990_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	6.44302e-65
NZ_CP011312.1\|WP_046439172.1\|906007_906352_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	6.73784e-36
NZ_CP011312.1\|WP_083966411.1\|916117_916522_+\|TipAS-antibiotic-recognition-domain-containing-protein	gnl\|CDD\|377906	pfam07739, TipAS, TipAS antibiotic-recognition domain. This domain is found at the C-terminus of some MerR family transcription factors. The domain has an alpha-helical globin-like fold. The family includes Mta a central regulator of multidrug resistance in Bacillus subtilis.	3.71414e-30
NZ_CP011312.1\|WP_046439160.1\|896675_897473_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	4.87409e-87

>NZ_CP011312.1|WP_046439171.1|905394_905583_-|hypothetical-protein
MLGSHTRARGFDGFALFASLKLSDTLQRFIKLGLAFLLLLFKLRCKRLNLFELCAITSGFAA
>NZ_CP011312.1|WP_046439169.1|904874_905126_+|hypothetical-protein
MLTDLEIYRRVDAMIPVEVDRDDAEHELLHCEYEDAIADLLTEAFLSGKLPQNAIDFVSSEYKHGTVAITLEYIAAQMKQSAA
>NZ_CP011312.1|WP_158407825.1|904651_904891_+|EndoU-domain-containing-protein
MSKFPKAWTDQKIVDAVRDTLENPSFYFAKDTRRAVWREIDGVLIEVSYDILPGGKVVFNTAHPAKTIKKKAKRNANRS
>NZ_CP011312.1|WP_126363835.1|903870_904569_+|hypothetical-protein
MLYIWSEHPRSRGDNYLFLTRSLDDTLKGLEYPEVADPVGFVQAQKAFRRAMWVKDLDSLAEREKAKRKLQGVLNRLVVQPARDTVGLGVLQAGTAYARVAEPGACAFCLMLAARGEVYSDSTVFGDTGRYHDNCRCLAIEVKNKSQLPRLNRDLADLWEETRQGHGGTLEFKDWRHTITAMREQYGGDTDWPKLKYARIPTYRYGGKSVVFEGEEITPFEENAGACATWVA
>NZ_CP011312.1|WP_052735865.1|901903_902926_+|prolyl-oligopeptidase-family-serine-peptidase
MNIFFPLRCFIHALNAAVLSIVLILSVIPVVSAQEVADSILEESEENYVQDNSVSVLLEGAGDVAEAEIIEAPVEDAVTVLDVPELPVVAGQTMSIETLTADAMSRRYLLSVPVNYDSGIAVPVLFAFGGWNNSPEVFRDYSRLNEIAGEEAIIVYPEGVGHAWAGAPYALTSQEQDINFVRQIIDEVAHHYTVDRERIYATGMSNGGGMAALLGCHVPELFAGIAMVSGAYYTPVNQNCSSISIPSLFIHGTDDDVVHYEGGQRHEAYYFPVAEMLASYAERNACTNTPPRTTFVGVGVERQEFENCAAETQHIKALGQAHIWNTEPNAAWEVWSFLAR
>NZ_CP011312.1|WP_046439165.1|900391_900979_-|hypothetical-protein
MSVKEFDAGYFYAAELKRFAREIGISVGNRRKFEVEDLIRSFLETGVVPTSQPTLPRNKGEERDRLVLDEQVRNYVDDKETKEFLLDAVRSSSPGIKKKSGQWYWLNDWRRKQQERHAVFTYQDVVDHLSQLMHQEGRLPQVPSARMNNFITDLRADPVNREMTRDEVQQEWRWLKKQPGPKTYAEYKRRKRQQD
>NZ_CP011312.1|WP_046439164.1|898761_900252_+|glutamate--tRNA-ligase
MVAMTEVRVRFCPSPTGTPHVGMVRTALFNWAHARHTGGKLVFRIEDTDAARDSEESYQAIIDSLTWLGMDWDEGVVVGGPHEPYRQSQRMDIYAEVLEKLKAAGFVYPAYSTAEEVEQRHKAAGRDPKLGYDNFDRELSQEQIAAFEAEGRQPVWRLRMPDKDWKWTDLVRGEIEFKNATQPDYVVARSNGAPLYTLVNPVDDALMGITHVLRGEDLLPSTPRQLALYEALIAIGVAKQTPEFGHLPFVMGEGNKKLSKRDPQSNLFNHRDNGIIPEGMLNYLALLGWSLSSEKDIFSMDELIENFQVENVLGNPARFDQKKLEAINADHIRLLDLDDFTTRLREYLSEYYDFPEDYPAEKFALAAELVQTRIKTLSEAWGLLSFLVTEDEDLLFDEKSAKKNLKETAIEPLEVGIAALEAVDDFSTANIEAALSKALIEDLGLKPRVAYGALRVGISGQAVSPPLFESMELLGKESTLKRLRSAREKTPFSTTE
>NZ_CP011312.1|WP_046439162.1|897573_898698_-|chorismate-binding-protein
MSSSPPASAPDFLLSRGHGSVRTQGAQQHLDNIDDAVDLLRAKKVDMVVGALAFRRDHKAALTVPVSIIREDGPLEPHAYYRHGSGAILRAQLAKLIPDIEEHHIRVQAAIDTISRSELKKVVLARAIDIDFSPPVDPRLVAARLIDLSFTKDGFIADLSPAGEDFLGHTLVGSSPEVLIKKQGSTISAYPLAGSAARSMIPREDKLRGEELRRSSKDLVEHQFVVEHLRRLLIPLCSTLTIPDYPELTCTNEMWHLATPVVGTLKDPHYTALELARLIHPTPAICGTPTDAAEELIALAEGDRRFYAGAVGWCDNTGDGEYMVAIRCAEINAEGTHARAWAGGGIVAESDAHAEVAETSAKLRTIAKALGLKI
>NZ_CP011312.1|WP_046439160.1|896675_897473_+|fumarylacetoacetate-hydrolase-family-protein
MRFGRIATPDGLSFCVVEGKQGQEVCRAIAGTPFEEPVFTGKEYKLSEVRVLAPMLPSKIVAVGRNYADHVAEVFQKSAEHLPPTLFLKPPTAVVGPEAAIKIPPFATNVEFEGELAVVIGRPCKNVKAADWKSVVLGFTIINDVSSRDLQFSDGQWARAKGIDTFAPLGPWIQTDIDSIDTSNLPIKAHLTHDGVTETKQDSNSNQMIKTVGECIEMITQSMTLLPGDVICTGSPAGTAEMVPGDYIEIEIPGIGKLGNPVEAG
>NZ_CP011312.1|WP_046439158.1|895271_896384_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MISSAERGHAPATTRRRGTSGRRKALGLLALMLSLTLLCICSMVLGAKATNLATINQAWPYALDILFGHTNVPQLITNGMESDLADTAGIIASLRIPRTILSILIGIALGLAGAVIQGLTRNPLADPGMLGVSSGAALFVAAGIFLFGLNTITAHLWLAFLGAGLASLLVFGISSTSVGKGDTLGLVLAGAALSASFSAITSGIVYIDPNALDTLRFWQAGSVTGRGFDIIIPALVPILIGAILALLSGPTLNVLGLGAETAQALGTNVVRANFMGLITITLLAGAATAAAGPIGFIGLMVPHIARSITGPDYRWILPYSALTGAVTLLAADIIGRLVMRPGELQAGIVIALLGAPVFIWLVRNRKMVSL
>NZ_CP011312.1|WP_046439172.1|906007_906352_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MITIVLTACPAGLRGQLNRWLFEISAGVFVGHVSTRIRDRLWSIIVSELKNGRAIMAFSTSKNETGFEIKVHRHDWEIIDSDGIPLVLRPTRSNPESPLRKGWSKASQRRRKRK
>NZ_CP011312.1|WP_046439174.1|907330_907990_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTFLSAIDLNPYRRKTALFASNPRTLHAAVMNCFSPDLHAKEKRILWRLDQSTDRISLLVLSENRPCFEHIQEQAGWSNQPSSKIRDYNPLLEGLQPGQQYRFRLAANPTRIVTQSDGKKIRAAHVTVKHQKQWLRDKITAHGFSIYNGNTTDDETEMLLVTRRDRLRFNREKARVTLNRVQFDGVLTVESPELLRNAMLNGIGRGKGYGMGLLTLSAS
>NZ_CP011312.1|WP_046439176.1|907989_908691_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSVLLLKLAGPLQSWGDHSRFMHRDTRREPTKSGVIGLLAAAQGRLRTDTITDLAELRFGVRTDQIGTVISDFQTEIDWRNREAEPLTHRDYLADAIFVAAVEGSTSVITELAEAVKSPKFPLFLGRRACPPSGQLLIGIKENSLVECLENEKWHASCWYKKKQPKKVQLRLSYDAHGDDPISEMVSDVPKSFDLKNREYGVRAVTHRFTSDIDNPKGWEMKDHNPFTLLGDA
>NZ_CP011312.1|WP_052735981.1|908687_909821_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MFIDIHILQTIPPSNVNRDDTGAPKTSIYGGVRRARVSSQAWKKATRESFKEYLDATELGERTFYAVDRIAKSIIESRPDLADKAVSLAEEIFKVAKIKISPEKKKNNDETASPKSVTSYLLFLSRIQISNLAQLAIQAHDTGESFNRKTINKIIQSDNSIDIALFGRMITDSPDLNVDAACQVSHAFSVHPAEIEFDYFTASDDNKENDTSGAGMIGTVEFVAPTHYRYATINTEGLISNLDSVEAAARATEAFLRSFILSMPTGKMNTFANRTRPELVLVQIRQDQPVNLAESFEKAITTTTGRMAKATIELASSAKNADETYGSAAKESFYLATNNADTPETRAELDAIGTHVTFDDLISLVGKAVRSRAENNA
>NZ_CP011312.1|WP_046439179.1|909869_910502_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTSSISNKIASHVYSKIGPLQTNYLADYSSAKAELAELRRSANNPKASFKIWSLVFDNLDEELIGKGDRFNRAERALLTTFQLYAIHQQSSNKPMHVTAKTTGAEQSFPQGLGTAVRRIANPNDSDDWEQAILRRFSSVVNASTFEGTKHHLRGLIQIFRAKDIPLNYGLLAKDLYRLQFPEAVQSVHLRWARELYQRSPETSKTAEVSA
>NZ_CP011312.1|WP_052735868.1|910482_912132_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MESHFNLLDEKWIKVIDINGIEAEISIHELLSNSSHYQAFANELPTINFAILRLLLAILEAALLEEYEDDELVEEWKNIWETGSLPIDIIDDYLTTYRHRFYLIDETYPFLQVPTLATAKNEWKKLDLIVIDSPGEGSLFTRRTANVLDLAEAARWLVHANSFDFSGIKSGAVGDDRVKGGKGYPQGIGWCGWLGGTTIIGRNLFETLMLNFVAEGDFSSLDKPIWEEEPLTAAARPYAQPHGQKGLFTWPQRRIRLKIEENKATGVLVCNGDPIDYTNQLAHENMTAWRYSEPQSKKAKKPVYMPRALQSEKMLWQGLSTLLPSDNAELVDKTGILKFKPAKNVEWVGRLIERGVLPYDYRIQLDVVTIEYGTQNASVEKVLHDSLRMSAALASIDQQELQSWVQDAVSYADKTALAVTNLAADLIIAEGYSGDKIAKKRKQTYAKMLAAIDPQFRNWLSQLSIDSDGVTLLQEWIMYLRRLGNQTAQQLLQTTSSKAWSGRKHNDHIVNVGTAASRFSFSLAKILPTTNPLQSSNNQKGDSHDIINK
>NZ_CP011312.1|WP_046439180.1|912225_915087_-|CRISPR-associated-helicase/endonuclease-Cas3
MPDTLRINLQEPPSNLDALIWAKSQNNGEQSLPLWAHLDDAACVADLLWDNFLSHHTRNILADDCGSIERARKLAIFLAGGHDIGKASPHFTMQVGELKRRLEDAGAIFHHLDKSSLRPHSLVSAQSLHYWLSQQGKTNVALPLALIVGGHHGVYPASIISSEAKGLGKTEASLWHEIRQRLWNRAAATAGIKPEDFDFLAQGSFRAESQLILTGFIIVSDWIASNTDLFPLEVETNTDNRLRRARHAIQKLQLPKPWRPNPPDSINELFRTRFDFPDTATPRPVQESAAEIASSLESPGLMIIEAPTGEGKTEAALAAAEIFADRFQLGGLAFALPTCATSDAMFPRLLSWLDTTISPDQQASAILSHGKAEFNEDYKNIFPRRYNNFSPLYDESSGSTSSSVTAHWWLRGRKTSVLADFTIGTIDQILFAALASKHVMLRYLGLSGKVIIFDEIHSSDHYMSVYLNRILEWLGAMNCPVIALSATLAPRKRAQLIQSYRRGVMKRAGERYNKKLEQQDEKTSLAACGYPLITTVTTKGITFTAPEQSSRSSTTKVEFIGDDTDDVCNIINKVFAQGNGCIAVVRNTINRAQKTFQALKETLDGVEVILLHSKFIGPDRRATEKMLTTRLGKNASQRPHKLVVVATQVIEQSLDVDFDLMLSDIAPIDLIIQRIGRLHRHESNQTFRQPALANPLLFITGTDLKAATPNQLPQVTPALDKDSAHVYGESSLLRCIATLFLYARTDSLRICSPDDIAALVSTADEPHFSAPRGWEEKWNKAENAEKEKIIGKKNRARGFLVPSLTASSDLLSWANQRGNASEEPQQGYAQVRDSEENIEVILVQHINGTIRTLPWLKNYPSEQVDFATGIDSEVARATAQCSVQLPTFLANNSHADKIISELEKNGIESWQNSHWLKGQLPLILDENLCATVSNFTFIYDPETGLHYKQQKKD
>NZ_CP011312.1|WP_052735869.1|915615_916161_+|MerR-family-transcriptional-regulator
MSNCDQTLRTVGEVAQLLGLSVRTLHYWEQRGLVVPSYRSIADYRLYSTADIERLQLVMIYKATGMSISAIIDVLSQDSMRITHLRKQRTLLIEKQAEVQQMLNAIDVLLTDAQRSVTRDYEKPTGHREYEEQNLSEENFMSMSEEHSQGEQSQLSVEEIAQILGEANFAAYQEEAEKKLG
>NZ_CP011312.1|WP_083966411.1|916117_916522_+|TipAS-antibiotic-recognition-domain-containing-protein
MSQPTKRKPKKNWGDTQDWEISQRTISQRSAADWQDAQQQQDKLDQDLSAAYLADVAPGSETADALVERHREWLSSYFPVTHSKQVLIARGYVADPRFRAHYDNYAQGLATWLKDSIDARAVKCGVDPETAEWA
>NZ_CP011312.1|WP_046439181.1|917015_919208_-|YhgE/Pip-domain-containing-protein
MKNIWLIFRNDLFAIKNNVMTAVTIFGLIIIPLIFISFNVLASWNPFDNTDRLKIAVASNDAGHHSDVISMRINLGDQVLSQLSRNHDINWIITSENQAIEGTRSGEYYAAIVLPKTFSDDLLTFYLEGTQPSTLELYTNQKKNALSTTLTSRGANAVTQTIDDNFNKVVTNIGLGVISSLDRYFTDNNASQALETIHTRITTTQQRILAGSQTAYAAAGLIDSTIPLIDGADSILHTASTQTTSSPENTETNGGQGAQAVTSLADTLSQTTQSLTTALDRTSTSYQAISDQLDPLLNTSTVLSTSGSQTYRELANGVDTQIHNFQGLKVNLNNHIRTILPTTTAPGYDLVIAQLDAVINQSTMLRDSLRNTAHALETGQESADESRRNARQAIESAIAAVRNISQTYQNTLQPQLLALGESVDTLAQDIAIVRNDIQGVRSALSSNDNSPHTMLNSASTAVKRLAFNLEQQAQKFSELANTIEEASQSGDLSKLKDIANRDPETLAAQIASPVAVNRQPVFSVVSFGAGMAPLYTALALWVGALLTAVLMRSKAQSLYPDLSGTQTFFGRLLTFLLVGLAQATLVVLGLIVFIQIDAVHPLLLLLAGWVTSTVFMTIIYSLVITFGNAGKAIGVLLLVIQVSGAGGAYPLQLLPSWFQNISPWLPATHAINAFRSAIAGIYHGDIYKQLAILLLFIIPALLLGLIIRRLTEDNIKKLSTAMESTKVMAA

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Crispr_ID: NZ_CP011312_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011312_4

1877364-1877940

Orphan

Consensus_repeat	Method
GTTGTCCCCGCTCGCGCGGGGATGTTCC	PILER-CR
GTTGTCCCCGCTCGCGCGGGGATGTTCC	CRISPRCasFinder
GTTGTCCCCGCTCGCGCGGGGATGTTCC	CRT

9 spacers

The CRISPR arrays of NZ_CP011312_4

>merge|NZ_CP011312|4|1877364-1877940|PILER-CR,CRISPRCasFinder,CRT
GTTGTCCCCGCTCGCGCGGGGATGTTCCGGTGAGATGCTTAGCGCCCTAGAGACAGTGATTGTTGTCCCCGCTCGCGCGGGGATGTTCCCGGAGTCAACATTGGCGCGAATCGGCTTTTTGCGTTGTCCCCGCTCGCGCGGGGATGTTCCTTCGCTTACTCCCACCATGGCACTGATCCTGCTGTTGTCCCCGCTCGCGCGGGGATGTTCCTTCTAGATTCAATAGTGTCCTTCCTGATGTGTGGTTGTCCCCGCTCGCGCGGGGATGTTCCGCCCGTCTTCTGTGTGTCGCTCGACCCGGTGAGGTTGTCCCCGCTCGCGCGGGGATGTTCCGGATTAGCCAATGACTATTGCAAGCCGTGAGCTGTTGTCCCCGCTCGCGCGGGGATGTTCCGTATGTACCCGCTGAAACATCAATTTCTTCCCAGTTGTCCCCGCTCGCGCGGGGATGTTCCTCCGCCATGACGTTTGACGCAACTACAGGTGTCGTTGTCCCCGCTCGCGCGGGGATGTTCCCGTGAAAAGCTTTTGTGTTTGGTGGGTGCTTTTGTTGTCCCCGCTCGCGCGGGGATGTTCC

>NZ_CP011312|4|3|1877364-1877940|PILER-CR
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GGTGAGATGCTTAGCGCCCTAGAGACAGTGATT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	CGGAGTCAACATTGGCGCGAATCGGCTTTTTGC
GTTGTCCCCGCTCGCGCGGGGATGTTCC	TTCGCTTACTCCCACCATGGCACTGATCCTGCT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	TTCTAGATTCAATAGTGTCCTTCCTGATGTGTG
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GCCCGTCTTCTGTGTGTCGCTCGACCCGGTGAG
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GGATTAGCCAATGACTATTGCAAGCCGTGAGCT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GTATGTACCCGCTGAAACATCAATTTCTTCCCA
GTTGTCCCCGCTCGCGCGGGGATGTTCC	TCCGCCATGACGTTTGACGCAACTACAGGTGTC
GTTGTCCCCGCTCGCGCGGGGATGTTCC	CGTGAAAAGCTTTTGTGTTTGGTGGGTGCTTTT
GTTGTCCCCGCTCGCGCGGGGATGTTCC

>NZ_CP011312|4|4|1877364-1877940|CRISPRCasFinder
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GGTGAGATGCTTAGCGCCCTAGAGACAGTGATT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	CGGAGTCAACATTGGCGCGAATCGGCTTTTTGC
GTTGTCCCCGCTCGCGCGGGGATGTTCC	TTCGCTTACTCCCACCATGGCACTGATCCTGCT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	TTCTAGATTCAATAGTGTCCTTCCTGATGTGTG
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GCCCGTCTTCTGTGTGTCGCTCGACCCGGTGAG
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GGATTAGCCAATGACTATTGCAAGCCGTGAGCT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GTATGTACCCGCTGAAACATCAATTTCTTCCCA
GTTGTCCCCGCTCGCGCGGGGATGTTCC	TCCGCCATGACGTTTGACGCAACTACAGGTGTC
GTTGTCCCCGCTCGCGCGGGGATGTTCC	CGTGAAAAGCTTTTGTGTTTGGTGGGTGCTTTT
GTTGTCCCCGCTCGCGCGGGGATGTTCC

>NZ_CP011312|4|3|1877364-1877940|CRT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GGTGAGATGCTTAGCGCCCTAGAGACAGTGATT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	CGGAGTCAACATTGGCGCGAATCGGCTTTTTGC
GTTGTCCCCGCTCGCGCGGGGATGTTCC	TTCGCTTACTCCCACCATGGCACTGATCCTGCT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	TTCTAGATTCAATAGTGTCCTTCCTGATGTGTG
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GCCCGTCTTCTGTGTGTCGCTCGACCCGGTGAG
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GGATTAGCCAATGACTATTGCAAGCCGTGAGCT
GTTGTCCCCGCTCGCGCGGGGATGTTCC	GTATGTACCCGCTGAAACATCAATTTCTTCCCA
GTTGTCCCCGCTCGCGCGGGGATGTTCC	TCCGCCATGACGTTTGACGCAACTACAGGTGTC
GTTGTCCCCGCTCGCGCGGGGATGTTCC	CGTGAAAAGCTTTTGTGTTTGGTGGGTGCTTTT
GTTGTCCCCGCTCGCGCGGGGATGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011312.1\|WP_158407832.1\|1883721_1884465_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319899
NZ_CP011312.1\|WP_046440379.1\|1858865_1859681_+\|glutaminyl-peptide-cyclotransferase	unknown	unknown	gnl\|CDD\|368283
NZ_CP011312.1\|WP_046440411.1\|1887006_1888167_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157
NZ_CP011312.1\|WP_046440386.1\|1862523_1864710_+\|helicase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|379300
NZ_CP011312.1\|WP_046440389.1\|1866510_1867146_+\|DUF3239-domain-containing-protein	unknown	unknown	gnl\|CDD\|378679
NZ_CP011312.1\|WP_046440410.1\|1885441_1887010_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP011312.1\|WP_046440388.1\|1864809_1866501_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP011312.1\|WP_046440375.1\|1856430_1857882_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP011312.1\|WP_046440384.1\|1861492_1862092_+\|DUF3235-domain-containing-protein	unknown	unknown	gnl\|CDD\|369056
NZ_CP011312.1\|WP_046440405.1\|1882642_1883725_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224919
NZ_CP011312.1\|WP_046440382.1\|1860489_1860876_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP011312.1\|WP_083966455.1\|1879160_1880228_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_CP011312.1\|WP_046440376.1\|1858118_1858856_-\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
NZ_CP011312.1\|WP_046440413.1\|1888163_1891289_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP011312.1\|WP_046440403.1\|1881314_1882325_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_CP011312.1\|WP_046440401.1\|1880220_1881216_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226965
NZ_CP011312.1\|WP_046440381.1\|1859744_1860338_+\|DUF2771-domain-containing-protein	unknown	unknown	gnl\|CDD\|378520
NZ_CP011312.1\|WP_046441420.1\|1862268_1862457_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_046440400.1\|1878408_1879164_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_CP011312.1\|WP_046440398.1\|1878109_1878409_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011312.1\|WP_158407832.1\|1883721_1884465_-\|VOC-family-protein	gnl\|CDD\|319899	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to bleomycin resistance proteins, glyoxalase I, and type I extradiol dioxygenases.	1.90976e-26
NZ_CP011312.1\|WP_046440379.1\|1858865_1859681_+\|glutaminyl-peptide-cyclotransferase	gnl\|CDD\|368283	pfam05096, Glu_cyclase_2, Glutamine cyclotransferase. This family of enzymes EC:2.3.2.5 catalyze the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.	3.67766e-94
NZ_CP011312.1\|WP_046440411.1\|1887006_1888167_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.06164e-101
NZ_CP011312.1\|WP_046440386.1\|1862523_1864710_+\|helicase-associated-domain-containing-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	1.58104e-28
NZ_CP011312.1\|WP_046440389.1\|1866510_1867146_+\|DUF3239-domain-containing-protein	gnl\|CDD\|378679	pfam11580, DUF3239, Protein of unknown function (DUF3239). This bacterial family of proteins may be membrane proteins however this cannot be confirmed. Currently there is no known function.	2.22903e-52
NZ_CP011312.1\|WP_046440410.1\|1885441_1887010_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0
NZ_CP011312.1\|WP_046440388.1\|1864809_1866501_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	5.6094e-110
NZ_CP011312.1\|WP_046440375.1\|1856430_1857882_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	6.74522e-117
NZ_CP011312.1\|WP_046440400.1\|1878408_1879164_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	1.37128e-144
NZ_CP011312.1\|WP_046440405.1\|1882642_1883725_+\|hypothetical-protein	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	1.56286e-79
NZ_CP011312.1\|WP_046440382.1\|1860489_1860876_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.56327e-19
NZ_CP011312.1\|WP_046440401.1\|1880220_1881216_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	2.3179e-125
NZ_CP011312.1\|WP_046440376.1\|1858118_1858856_-\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	3.06511e-71
NZ_CP011312.1\|WP_046440413.1\|1888163_1891289_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP011312.1\|WP_046440403.1\|1881314_1882325_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	3.78375e-82
NZ_CP011312.1\|WP_083966455.1\|1879160_1880228_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	5.58209e-105
NZ_CP011312.1\|WP_046440384.1\|1861492_1862092_+\|DUF3235-domain-containing-protein	gnl\|CDD\|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	1.06453e-38
NZ_CP011312.1\|WP_046440381.1\|1859744_1860338_+\|DUF2771-domain-containing-protein	gnl\|CDD\|378520	pfam10969, DUF2771, Protein of unknown function (DUF2771). This bacterial family of proteins has no known function.	6.27142e-54

>NZ_CP011312.1|WP_046440389.1|1866510_1867146_+|DUF3239-domain-containing-protein
MANFHFVVDKAHAQRNNELLKDTKRLQLSAAIFSFILLAIGAGFYSWLGAMVGVIIFACFTIVALISFILIPVFPRLVGSAQSLYDSYELVPAIITEINPRDMSIMALVDADSTGTNPQPALAVRTISNLAGHSRTVGEKVPSVAVTGNRSAANKQTWDQISPVPIAWGTPEAAIIKAATDAIDPAQWEKLEKHLAHYDEVRKTPFDLLLL
>NZ_CP011312.1|WP_046440388.1|1864809_1866501_+|DEAD/DEAH-box-helicase
MGPLIVQSDKTVLLETDHEQAAAARAALAPFAELERAPEHVHTYRITPLALWNARAAGYDAENVIDALERFSRFPVAQSLLIDIAEIMSRYGRVRLHMHPAYGLVIESEEPAILAELQRHKKIVPMLGQVIDENYIVVHPSERGRLKQELLKVGWPAEDLAGYVDGEAHPIALSTEHEQWQLRDYQELAAESFWAGGSGVVVLPCGAGKTMVGAAAMAKAQVTTLILVTNTVAGRQWRDELLKRTSLTPEEIGEYSGEKKEIRPVTIATYQVVTRKTKGEYRALELFNSRDWGLIIYDEVHLLPAPVFRMTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRFDAAWKDLEAQGFIATAECVEVRTTMTDTERMLYATAESNDRYRIAACAHTKIRAMEKILQHHHGQPTLIIGAYVDQLEEIGSHLGIEVIDGKSSTKKRESAFNRFRRGEITTLVVSKVANFSIDLPEATVAIQVSGTFGSRQEEAQRLGRLLRPKADGCAAYFYTLVSRDSIDADYAAHRQRFLAEQGYGYRICSAEDLTTFLPIVTGYPGQSDAEKA
>NZ_CP011312.1|WP_046440386.1|1862523_1864710_+|helicase-associated-domain-containing-protein
MTSFSPTAAFSTWLETTDTQQLARIIHTRRDVLYPIPPTTSAFMGRLEIGYSQNEASLSLNAPALIVLEALRVLGGGIHPIDHPELYALTSSLLGSQHTSAGLGRLYDAALAFPIDDSSALAPHAAEVSAFGRFHVDFPGLPTAADISASFSTLTKPQLFLLRNILRQGGSTIMRENYHDLIKNGILIQLDARTVRLSEVTRALLRQETPRVINYVELERRKASDITTQATGQGLEVVRLMRMMLSFLRITPLPLLKNNALGVRPLAHLAKELRSNELTTLRLIGIALAAGLIERGALRPTPEPEDLSSYLGVTELSETWEQADLAQQWYLLAIAWLNQATFAAWLVGTPGTTNKPLRALEDETFIGSLPAAKANLLCLFSTSEQPLIIEDFASVAAIDSPLRAARLHPQIRDHILHEARFLGLLVDNQGTIFARDICHQIEALATTMTQHTPAITEQLIIQPDMTIVAPGPLSWEMHKFLSSIADIESYGVASIYRLNNESVRRGLDHGHSSEEMINFLRRYHGDLPQAIEFLITDAATEHGTIRGGLATSYIRANNPLLIDAIMNSAISSSLSLRRIAPEILISSLPLGTLITTLGEHGFHIAAENNTGELIDILGAGYQVSAPVKTHPPLITQEVIARMVHTLRPTSNASLEPQISSTTEKIKAAIATNQQIQVVLKADSTTINDSSTQLLVSPIMIHAGVLTAIDTAGVRRSIALDKIEQVTTS
>NZ_CP011312.1|WP_046441420.1|1862268_1862457_-|hypothetical-protein
MANVEKKGYVDPGWPEHVPGDGHVVTELIAKIAGANSPYGDIEFPVPAEELGYVHPYTRINK
>NZ_CP011312.1|WP_046440384.1|1861492_1862092_+|DUF3235-domain-containing-protein
MARHARKSASMFKKIAASTVAVGTATTLLAPIANAAPDSDWDRLAQCEAGGNWSINTGNGYHGGLQFSPSTWNAYGGQQYATYAYQATREQQIAVAEKVLAGQGWRAWPSCSSKLGLNSAPTPRDIVVNAPAPVQEIVLSAEQNSSNASDAIYDALKGRLATFGMSVPAEVESFYQTNREDFNTFYNANKETIDGILAA
>NZ_CP011312.1|WP_046440382.1|1860489_1860876_-|cold-shock-protein
MPIGKVKWYNAERGFGFVSNPDGEDCYVSQKVLPPGVEELYPGQRIEFDFVSGRKGPQALRVQLVDKPKQRKVQHKFPPEELASMIADLATTLESSVQPVLAQGRYPDRKEATQIAKILRVVADELDV
>NZ_CP011312.1|WP_046440381.1|1859744_1860338_+|DUF2771-domain-containing-protein
MPSSTTKKKNLLQILILLIAVVVIVVASVVFQNWWNNRPGLEPADITIRATVGDQVVEVSPYTIAELGMEVKEYEITSLSVGENDTVKLDLPEEIYDHDWMLLSIYDDPAANDEKYYRAHEQTTVEIAGSANPTSDINTRPRLAIIEVTSVLIGHDAHGAEAPYTVTWSIGTKYAESITFDDSGSEDSQSADSAATN
>NZ_CP011312.1|WP_046440379.1|1858865_1859681_+|glutaminyl-peptide-cyclotransferase
MIFRRTPTKIIVLSACTALSLSACSFLTVLPGVSPTVEKLQPVVEKRYPASEFWFTQGIEVVDNQLLISTGQYNESRIFYTQLGGLEEKHRHWLEPQYFGEGATKIGDVVWQLTWKSGVAFKRDAATLTEIEKVSYPGQGWGLCSFANELIMSDGTNELRVLGPDTFVEKRRIIVTDQSATATTVDKLNELECVEKDGRRQVYANIFLTTDIIRIDANSGEVTAVIDASSLENNAAADANNVLNGIAYLPEEDRFLITGKRWPDMYKVRFE
>NZ_CP011312.1|WP_046440376.1|1858118_1858856_-|DUF3027-domain-containing-protein
MPDVYQRWGSGDNRRVHTLNRRRDRDEKPHLLLGRVAVKVARRALVELDEGEVGRHMGASLDNDHVATHRFQAMVAGYDGWEWNAVLACAKGTRYITVNEVALVPGRFALQAPQWVPYADRVLPGDLGPKDQLPPRDDDPRLTESEGKKILSDFGVQDTINRWQAGIFGASSAYAQNATFHCESCAFFLPLAHHDNVGACGNQYAFDAKVVTADYGCGAHSQTPPAEPLSTPGAVPFDDELPVVL
>NZ_CP011312.1|WP_046440375.1|1856430_1857882_-|NCS2-family-permease
MTNTSATANKGFMDRYFKISERGSTIGTEIRAGVVTFFAMAYIIILNPLILGTGADINGKVLGIPQVAAATALAAGVMTIAFGLIARYPFGIAAGLGINTLVAVTMVSTEGLTWEEAMGLVVLDGVIIVLLAVSGFRTMVFSAIPQDIIAAMGVGIGMFIAMIGLVDSGFVRRIPDAANTTVPVGLGTNGSIASWPTFVFVIGLLICGVLVIRKVRGGLFIGILATTIIAMIVEALTGASSSATNPTGGWSLAVPAVPDSFGGIPDLSIVGDISLVGAFSRVGALSATLLLFTLVLANFFDAMGTITALGKQAGLADEKGIVPDLKKALVVEGAGAIVGGVASASSNTVYVDSSAGIADGARTGLANVVTGVLFLLAMFLTPLYEVVPIEAAAPVLVIVGAMMITQVREINFTKFEIALPAFLTIVVMPFTYSIANGIGVGFITYVIMAAAAGKAKNVHWVMWLVAGLFVLFFAVDPLLNAVS
>NZ_CP011312.1|WP_046440398.1|1878109_1878409_-|hypothetical-protein
MRSAIYYLLALVAGACASKINAPWQVFITPLLMALMLVTFAELPIRLEKQSFHYRVMVGNFLVVPLIVAALLWSFRALFDAPAPVLLAAGVVLLSAWIM
>NZ_CP011312.1|WP_046440400.1|1878408_1879164_-|ATP-binding-cassette-domain-containing-protein
MITLEKVAKNYNGEVQIGPVSLEIPAGGITALVGPNGAGKSTLLTMIGRLLDLDEGVINVAGFDVSSTKSADLAKVLSILRQENHFITRLTVRQLVGFGRFPYSKGRLTAKDEEIISRYIDFLNLKELENRYLDQLSGGQRQRAYVAMVLCQETDYVMLDEPLNNLDIAHSVEMMKHLAHAAAEFGRTIIVVLHDINFAARYAQHICAVKDGQIVAFGLVEEIMKDEILSDIFNTDITVIDGPGGLLACYH
>NZ_CP011312.1|WP_083966455.1|1879160_1880228_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MDKAVVTETPALAGFKKEASKNIRRSGAFINARAKLTYWVLFTVITTLALLFAFGLLAYGNPVPFGTPQFWLIAQRRMNAVIAMAVVALCQSLATVAFQTVTNNRIITPSIMGFESLYRALHTSTIFFFGVVGLNNARTLEMFIVQLVLMVGMCLVLYSWLLTGKNSNMHAMLLVGIVIGAGLGSVATFMQRLLTPSEFDVLTARLFGSVNNADPSYYPVAIPLCLTAGILILLSARKLNVLALGKEAAGNLGLNHKRLSIYILVLVSILMATSTALVGPMTFLGFLVVTLTYQLAGTFDHRYLFPMSISLGFLVLTSAYFIMNHVFYAQGVVSIIIEFVGGSAFLIVLLRRGRL
>NZ_CP011312.1|WP_046440401.1|1880220_1881216_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MIDTSTRESTSTHITRGKLFDVKLIIGIAVVIGLLILSLMTGEYDILNHADGWDIFGIVRIPRTIALVLSGAAMAMSGLVMQLITQNRFVEPTTTGTTEWAGLGLLFCMVVFPSTSVLGRMVCAVLFAFIGTMVFFLFLRKVSLRSSLVVPIIGIMLGAVVSAVSTFFALKTDTLQSLGIWFQGSFTSVYKGQYEVLWIVLFVVLMVFFYADRLTIAGLGEDIATNVGVNYQRMVIIGTGLIAVATGVVTVVVGSLPFLGLIVPNLVSMFRGDDLRSNLPWVCLSGIALVTVCDLLARTLISPFEIPVSVILGMVGAIVFVTLIVRQAKNG
>NZ_CP011312.1|WP_046440403.1|1881314_1882325_-|ABC-transporter-substrate-binding-protein
MNTKLPKVVALIVATSLTLTACSNSSNSSSSSSESAATSSAAANGTVTVEDNFGTVEIATPVNRVASTDNRTFEVLEQWGIDLVAAPLPLIPSTISYKTDESIVDLGSHREPNLEALVAAEPDLIISGQRFSQHYEAMKTLNPNVPIVDFEPRDGESLDEELKRQVTELGKIFNKESEADQLIADFDAALKRAKQAYNGNDTVMAVNVSGGEIGYIAPSVGRTFGPVFDLLGLKPALEIENASSNHRGDDISVEAIAESNPQWIFVLDRDGAINADKEGYTPALDVIKNNAALANLAVVSDGKIIVAPQDTYTNESIITYTEILNSIADAFEAQKS
>NZ_CP011312.1|WP_046440405.1|1882642_1883725_+|hypothetical-protein
MHQPDHIPTTSHIRPHFGNDYHRTAHPRVLEELVATTKETFSGYGLDHRCEQTADLIRHLCHAPQAGVHFMTGGTQVNTTAIAATLRPWQAVISADSGHINVHETGSVEHAGHKILTLAHTLGKITATQISDLVTDYRTSGVSEHASEPKMVYLSQPTEYDTLYSLAELKEIREVCNTFDLFLLIDGARLGYALGSPANDISLAELAQLADMFTIGGTKCGAAFDEAIVFPKPGTDTYFRNNMKQNSGLLAKGWLLGAQFQALMSDNLYVEINAHANKQAQRIAQAFHDAGISLLFPSPTNQQFALLTEQQEQQLSAEFICQFFGTHGNFRVTRFCTSWATEDADIEKLIAAIKRLAPAN
>NZ_CP011312.1|WP_158407832.1|1883721_1884465_-|VOC-family-protein
MPAITPTAWLNRTADEAADFYVHAFGLVGVDAEIAKTFTYPDPNDHYLAEFAGKTRVKLVRIEDFTLGLINASDEHTTTPAFNLYVSLDKTKAQRLWDILSENGVILVEFSEYTPGIDHGWLTDKFGISWQITTHPDLPTIAPAIHFNGQARQAGDYYLEIFGGTRNEILVEGDELILSSIIIDGQTLVLMDSAVDAIHSAGMSLHLRARGEQQETFHRALSYNPEKDMYGWMEDKFGITWQISDEG
>NZ_CP011312.1|WP_046440410.1|1885441_1887010_+|type-I-restriction-modification-system-subunit-M
MTPTDKEGQRAELHKTIWRIANDLRGSVDGWDFKAYVLGMLFYRFISENLTAYINKGEHNAGDEDFDYALLSDENAEYGRAVTVEEKGFYVLPSELFQNVRKRASRDENLNETLERAFKNIEGSAVGTDAEDDLKGLFDDLDVNSSKLGPTVAKRNEKLVKLLDAIGDLPLGNFENNSIDLFGDAYEYLMQMYASQAGKSGGEYYTPQEVSELLARITVHGKTQVNKVYDPAVGSGSLLLKFAKVLGKDNVRQGFYGQEINLTTYNLARINMFLHDVNYEKFDIAHGDTLTDPHHWDDEPFEAIVSNPPYSIKWEGDANPLLINDSRFAPAGVLAPKSKADLAFTMHILSWLAVNGTAAIVEFPGVLYRGGAERKIRKYLIDNNYVDTVIQLPPDLFFGTTIATCIIVLKKSKTDNAVLFIDASAEFSRVGNKNKLLPDNQKQILKHFATREDVEYIAKLVPNEDIAANDYNIAVSSYVEQEDTREVINITELNTEIARIVARQAELRTSIDVIVADLEGTK
>NZ_CP011312.1|WP_046440411.1|1887006_1888167_+|restriction-endonuclease-subunit-S
MSRIDELITELCPDGVEFKALGDIAQIVRGNGMPKAVLTDKGVGAIHYGQIYTHYGVWATETLSFVSAETAVKLAKVAPGDIIITNTSENIDDVGKALAWLGVETIVTGGHATVIKHDQEPKYLAYWFASKDFSVQKRKLATGTKVIDVSAKQLAIVRIPVPPLEVQREIVRILDEFTQLEAELEAELEAELEARKKQYEYYRNQLLTFPETGGEFKMLGKVLQIKNGKDHKLLGDGSIPVYGSGGIMRYVNTAAAEGPSVLIPRKGSLGNIFYVEGPFWIVDTIFRTEIDLSQVEPKFVYYLLLTMRLNEMNQAAGVPSQTQAVLNSLRIPVPPLEIQKKIVAILDRFETLIEDISVGLPAEISARRKQYEYYRDKLLTFKEATA
>NZ_CP011312.1|WP_046440413.1|1888163_1891289_+|type-I-restriction-endonuclease-subunit-R
MNEATPRKYDPIAVSSESTVVAEYIPDAKKDGAYQSEAALEREMIRLLESQAYEYLPLTSEAQLVSNLRAQLEALNHITFSDTEWRDFFENVIAGKNDGIIEKTVRIQEDHVQLLKRDDGSTKNITLLDKQNIHNNRLQVINQYEVDRADPTDKGNSGGRYANRYDVTVLVNGLPMVHVELKRRGVDIREAFNQIDRYQRDSFWADSGLFEYVQLFVISNGTLTKYYSNTTRSQCLKESQKSGTGKKTSNSFEFTSWWADAQNKPIQDLTSFIKTFFTKHTLLSILTKYCVLTADRMLLVMRPYQIIATERILQRIDTATNYERLGTVDAGGYVWHTTGSGKTLTSFKTAQLSSALPSVDKVLFVVDRKDLDYQTIREYDRFQKGAANSNTSTAVLKRQLEDPGTRIIITTIQKLSTFIKANKKHAVYDQHVVIIFDECHRSQFGDMHTDIIQSFQRYNIFGFTGTPIFTANSGSGGNPQLKTTEQAFGEKLHTYTIVDAITDKNVLPFRIDYVSTIKVGTVIDKQVSAIDAEKALLDPKRIDDIVRYTLEHFDQKTKRSSSYEHSVVMNVTEATRTRRQAEALRERKRVRGFNAIFATASIDAARRYYNAFQTQQEQLPPDKRLKIGLIYSYGANEAADDGILDDEAFDTGSLSLDARGFLEDAIQDYNDLFGTSYDTSADRFQNYYKDLSQRLKNRELDLVIVVNMFLTGFDATTLNTLFVDKNLRAHGLIQAYSRTNRILNSVKTYGNIVAFRDLEEETTAALELFGNKDSCGVVLLKPYSDYYDEYAEKVTELLKSFPLGEQIVGESAQKDFIQLFGAILRLENILTSFDDFAGHEMLTERQGQDYRSLYLDLYAEFRKEKTAEKELINDDVVFEIELIKQVEINVDYILMLVAKHREQFGDGQNKEIRSEISRAIDASPTLRSKKDLIEAFVDAVSADGAIDDEWQAFIAAKREEELALIIEEENLCADATREFIKIAFRDGVLRTTGTEITKMLPPVSRFAASGGHSEKKQRVIQKFNAFFKRFFELTTKGETDA

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Crispr_ID: NZ_CP011312_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011312_5

2051969-2052039

Orphan

Consensus_repeat	Method
CCAGAACCATGACATACCTGGCA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP011312_5

>merge|NZ_CP011312|5|2051969-2052039|CRISPRCasFinder
CCAGAACCATGACATACCTGGCATGTGCTCGTTGCGCCACTCTTACTGCCAGAACCATGACATACCTGGCA

>NZ_CP011312|5|5|2051969-2052039|CRISPRCasFinder
CCAGAACCATGACATACCTGGCA	TGTGCTCGTTGCGCCACTCTTACTG
CCAGAACCATGACATACCTGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011312.1\|WP_052735944.1\|2058954_2060949_+\|HtaA-domain-containing-protein	unknown	unknown	gnl\|CDD\|367875
NZ_CP011312.1\|WP_083966464.1\|2052834_2053473_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237632
NZ_CP011312.1\|WP_046440609.1\|2048945_2050466_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143434
NZ_CP011312.1\|WP_046441479.1\|2065134_2066979_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP011312.1\|WP_052735946.1\|2062110_2064669_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380076
NZ_CP011312.1\|WP_046440615.1\|2053435_2055265_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP011312.1\|WP_052735943.1\|2057208_2058444_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|223700
NZ_CP011312.1\|WP_046440601.1\|2043994_2045104_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99784
NZ_CP011312.1\|WP_046440624.1\|2069463_2069985_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273553
NZ_CP011312.1\|WP_052735945.1\|2060978_2062019_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_052735942.1\|2046373_2047594_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP011312.1\|WP_046440603.1\|2045167_2045986_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143605
NZ_CP011312.1\|WP_046440607.1\|2047693_2048728_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP011312.1\|WP_046440623.1\|2067361_2068963_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP011312.1\|WP_126316645.1\|2046108_2046360_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011312.1\|WP_046441469.1\|2043151_2043976_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225052
NZ_CP011312.1\|WP_046440610.1\|2050939_2051341_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NZ_CP011312.1\|WP_083966463.1\|2040853_2041222_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP011312.1\|WP_046441467.1\|2041218_2043123_+\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|225127
NZ_CP011312.1\|WP_046440617.1\|2055768_2057112_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701

Protein	Function_ID	Function_description	E-value
NZ_CP011312.1\|WP_052735944.1\|2058954_2060949_+\|HtaA-domain-containing-protein	gnl\|CDD\|367875	pfam04213, HtaA, Htaa. This domain is found in HtaA, a secreted protein implicated in iron acquisition and transport.	2.70217e-36
NZ_CP011312.1\|WP_083966464.1\|2052834_2053473_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237632	PRK14164, PRK14164, heat shock protein GrpE; Provisional.	4.58422e-73
NZ_CP011312.1\|WP_046440609.1\|2048945_2050466_-\|aldehyde-dehydrogenase	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP011312.1\|WP_046441479.1\|2065134_2066979_-\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.62989e-61
NZ_CP011312.1\|WP_052735946.1\|2062110_2064669_-\|hypothetical-protein	gnl\|CDD\|380076	pfam17961, Big_8, Bacterial Ig domain. This entry represents a bacterial Ig-fold domain that is found in a wide range of bacterial cell surface adherence proteins.	1.49266e-07
NZ_CP011312.1\|WP_046440615.1\|2053435_2055265_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP011312.1\|WP_052735943.1\|2057208_2058444_-\|esterase-family-protein	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	1.68829e-43
NZ_CP011312.1\|WP_046440601.1\|2043994_2045104_+\|hypothetical-protein	gnl\|CDD\|99784	cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.	7.41748e-58
NZ_CP011312.1\|WP_046440624.1\|2069463_2069985_+\|hypothetical-protein	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	5.14639e-05
NZ_CP011312.1\|WP_052735942.1\|2046373_2047594_+\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	3.83139e-11
NZ_CP011312.1\|WP_046440603.1\|2045167_2045986_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143605	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.20426e-99
NZ_CP011312.1\|WP_046440607.1\|2047693_2048728_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.68462e-176
NZ_CP011312.1\|WP_046440623.1\|2067361_2068963_-\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	3.17177e-52
NZ_CP011312.1\|WP_046441469.1\|2043151_2043976_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|225052	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion].	2.03993e-15
NZ_CP011312.1\|WP_046440610.1\|2050939_2051341_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.71577e-38
NZ_CP011312.1\|WP_083966463.1\|2040853_2041222_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.06094e-18
NZ_CP011312.1\|WP_046441467.1\|2041218_2043123_+\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_CP011312.1\|WP_046440617.1\|2055768_2057112_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.08042e-65

>NZ_CP011312.1|WP_046440610.1|2050939_2051341_-|helix-turn-helix-transcriptional-regulator
MAEKKESESREVFVISVAAELAGMHAQTLRTYDRMGLVTPERTRGGGRRYSRTDVELLRAVQKLSQEDGVNLAGIKAIIELKKENERLCEENKKLREENYSLSRRRSRGEVVHVPRSTAVVMWDPRRGRKNRG
>NZ_CP011312.1|WP_046440609.1|2048945_2050466_-|aldehyde-dehydrogenase
MTVYAPPGTEGSIVQFRARYENYIGGQWVAPIDGRYMDNITPITGEVFCQVPQSSAADIELALDAAHKAKDAWGKTSPAERARILHHIGDRIEENLEKIAVAETWENGKAVRETLAADIPLAADHFRYFSGAIRAQESRTSQIDENTVAYHFYEPIGVVGQIIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPASILLLMDLIGDLLPPGVVNVVNGLGHEVGSALSTSHRIGKIAFTGSTEVGKIINRAAADTIIPVTLELGGKSPSIFFADIMDYDDAFQEKCVEGMAMFALNQGEVCTCPSRALVHESIADEFLAMGVERVKKIKLGNPLDTSVMMGAQASQEQMDKISSYLKLGPEEGAEVLTGGKINKIEGFDNGFYIEPTIFKGTNDMRIFQEEIFGPVMSVATFKDFDEAIKIANDTNYGLGAGVWTRHQNTAYKAGRAIQAGRVWVNQWHSYPAHAAFGGYKESGIGRETHLMMLDHYQQTKNLLVSYDEHPTGLF
>NZ_CP011312.1|WP_046440607.1|2047693_2048728_-|alcohol-dehydrogenase-AdhP
MSDFPERFSGAVVEKFGEKLVINEVELPVPGPNEALVKVIASGVCHTDLHAAEGDWPVQPKPPFIPGHEGVGEVVQLGPGEHSVALGDMVGNVWLWSACGECEHCRTGWETFCDKAEYGGYTVDGSFGQYMLVDTRYCARIPAGADPVEVAPVLCAGVTVYKGLKVTDCRLGQFMVISGVGGLGHIAVQYAVAMGMRVIAVDIADDKLELAKKHGAEFTINAKKVDPAQAVMEFTGTGAHGVLVTAVHPQAFGQAINMARKGGTIVFNGLPPGEFPASIFDIVFKGLTIRGSLVGTRQDLEEALDFYARGLIKPTVKECELDDINQVFDDMRHGLIDGRMAIRY
>NZ_CP011312.1|WP_052735942.1|2046373_2047594_+|hypothetical-protein
MSISTLFPLYSDELYQQSTHFAQASRYIYEQITAHQTLYAYNLNPHHGQAINALKGRLYTLHRTWDTTASSYQRTATILHLAAGAQKELEVQARWLINTATQYGAVYENNSFHNVQDQWDIATPANAVLQFLRQASLLLDKTSAHTLLKENDLPTDIDPVAFRLKDLDLLDSDSIHDLNMIVAENEIRELLHKYPNARLLETGDGHTVVSFGDIDTATNIVTLVAGVNSHNNVASYLQRTDLIHNHTASSSSATVLWLGYRAPKNISKAFSGAPAQAAAKDLQEFQHILTQRNPTARRVLIGHSYGSTVVGYAGLTNTQNSIADAVILAGSPGVPARPNASEVYSVLANQDYIGLTGANSVAIHGVDPHASTFDSEKLRFDGGHSSYFDNQKFLDLIKRVRSSDTQ
>NZ_CP011312.1|WP_126316645.1|2046108_2046360_+|hypothetical-protein
MNMILYPTALQALQVTAEAPTVSTVLSPSMLSTASQQIAQRWHHIFSDCLTEEKATLNDVHHFARSVCDSDTRLAHSLSSLKP
>NZ_CP011312.1|WP_046440603.1|2045167_2045986_-|carbon-nitrogen-hydrolase-family-protein
MKVCLAQVRTTADKNKNYEILKNKIWTAVKQQARLIVFPEASMQAFGTGRLDIQAEPSDGNFVQQLHACAREHNIGVIFGMFSPADSVNRDGKTVNRVTNTLAVLLPDGRQFFYDKIHTYDSFNYRESDTVKPGKELVTFEYEDINFGLATCYDVRFPGQFRSLAHKGAEVIVLPASWAGGAGKYQQWQTLTSARALDSTCFIIAVDQAASGEEDTSAPTGIGYSALIDPTGVRLREAGAGEENLFVEIDPTVVEKTRKTLTVLLASDHYAS
>NZ_CP011312.1|WP_046440601.1|2043994_2045104_+|hypothetical-protein
MFNHARVIAEISSRREEFFAMVASHFYADVPLARLSFRLQPSLVDTLIAGLSHPLNITAWAHDLAHRGVDRSFYVPLSAALQHAVCHICSALPLVDVLAVEHRIDQIMKQLLAVNVDTLSAPIPAEVVEIERRSSRITVVRLIAEAPLSYKPGEYLQVTTDYFTGIWRCLYPSVPANEHGQVEFHLFHTNLTTPIGLLASARIGEKWLLANGYGKLSLSGNDLVMISHNTGLAPLRCIIIDYLMRTNAPRVHLFVGADSPGELYELQSLWGIAASAPWLSVTPVVGTILDPWWVRPTQACVAPRGLHLTQLGDPADVVASYGTWEDRDILISGSKQRVDYSSRTLIRAGTPIKNISSLHFNHIPAWMTD
>NZ_CP011312.1|WP_046441469.1|2043151_2043976_+|LLM-class-flavin-dependent-oxidoreductase
MRYENPLYLAEELAALDLLADQRLAIGVSRGSPEPSLRSYETFGYIPQPGDEQGASMAREKFLQLISAIRGEGLGTAAPLEEQYPQIYQPGSTLPIMPHSPGLDRRIWWGAASEKSAIQAAYDGVNLMSSTLVFGSGKPLNVLQAEHIHAYRDAWKEAGHKWNPRVSVSRSIFPVTNERERELFSGGQTHDEVGIIDNNEATFGRVYVDTPDKLVEQLLADEAVQAADTLLLTIPNQVGVKINVDILRNFAEHVAPALGWEPAQNGLASGYPIG
>NZ_CP011312.1|WP_046441467.1|2041218_2043123_+|cadmium-translocating-P-type-ATPase
MSAACGCDEPTTSPADEAEEAERPWWRDPGLVVPILSGVAFGTGLALEWSGLHIAALVAFWAGLLLGAYTFVPGAIRNLVVKRKLGIALLMTISAVGAVILGYIEEAAALAFLYSIAEALEDKAMDRARGGLRALLKLVPETATVLRDGISASVPAREIAVGDVLLVRPGERVATDGLVRSGRSSLDTSAITGESIPVEVAPGEAVSAGAINSAGVLEVEATATGTDNSLTTIVELVEQAQAEKGDRARIADRIARPLVPGVMVLAVLVGVLGSLLGDPETWITRALVVLVAASPCALAIAVPVTVVSAIGAATKFGVVIKSGAAFERLGGIRHLAVDKTGTLTRNRPEVTAIVAAHGFDDAQVLAWAAAVEQHSTHPLAAAIAAAGRGTPAAQDVAEEAGHGIGGLVDGRRVAVGSPRWIDAGPLKARVEDLEAEGQTCVLVTVDGFLAGAIGVRDELRPEIPEVVRTLRDQGVEVSMLTGDNSRTAAALAKLAGIGDVHAELRPEDKARIVAGFSETSPTAMIGDGINDAPALAGATVGIAMGATGSDAAIESADVAFTGHDLGLIPQALRHARRGGRIINQNIVLSLAIITVLLPLAITGVLGLAAVVLVHEVAEVVVIANGLRAARARKQ
>NZ_CP011312.1|WP_083966463.1|2040853_2041222_+|winged-helix-turn-helix-transcriptional-regulator
MLTIASRLDIMNRLGRAMADPTRSRILMSLLDSPSHPAVLSRELGLTRSNVSNHLTCLRDCGIVVAEPEGRQTRYEIADPHLAAALTALVDVTLAVDESAPCIDPACSVPGCCAASSSGDAS
>NZ_CP011312.1|WP_083966464.1|2052834_2053473_-|nucleotide-exchange-factor-GrpE
MLKSSTRTRRRSKLSTDDFAHDPEDISPQADQTDGEDLAAELDPELVAEMKEALGELGETELIEEVTDTEETESSVEVQLAERTEDLQRLSAEYANYRRRTERERLNAIETAKAQVLSQLLPILDDLDLADQHGDLEEGPLKAFRDKFVSTLETQGVHSFGEVGDSFDPERYEAVQDLSEGEEKLVGTVLRKGYVFGERLIRNAMVIISDPS
>NZ_CP011312.1|WP_046440615.1|2053435_2055265_-|molecular-chaperone-DnaK
MSRAVGIDLGTTNSVVAVLEGGEPVVIANSEGSRTTPSVVAFAKNGEVLVGQSAKNQAVTNIDRTIRSVKRHVGTDWNIGIDEKNYTPQEISARTLMKLKRDAESYLGEDVTDAVITVPAYFSDAQRQATKEAGQIAGLNVLRIVNEPTAAALAYGLEKGEKEQTILVFDLGGGTFDVSLLEIGDGVVEVRATAGDNELGGDDWDQRIVDWLVEKFKSAQGVDLSKDKMAMQRLREAAEKAKIELSSSQSASINLPYITVDADKNPLFLDETLSRTEFQRITQDLLDRTKAPFNQVVKDAGIPISDIDHVVLVGGSTRMPAVSDLVKELTGGREPNKGVNPDEVVAVGAALQAGVLRGEVKDVLLLDVTPLSLGIETKGGVMTKLIERNTTIPTKRSETFTTAEDNQPSVQIQVFQGEREIASANKLLGSFELGGIAPAPRGVPQIEVTFDIDANGIVSVSAKDKGTGKENTIKIQDGSGLSQEEIDRMVKDAEAHAEEDKKRREEQETRNSAENMAYQTRKFLEDNGEKISESTKTQVTEAADAVDEALKGEDLEAIKQAVEKLSTVSQEMGKEIYEAEAANAAAGEAGEADPNVVDAEIVDEDEEKK
>NZ_CP011312.1|WP_046440617.1|2055768_2057112_+|AI-2E-family-transporter
MDTNNPNSLPHDDLSDRIDESLGLSDPIALEANLDPTTVNTNNPTIDRSIILGADGRWLSSWALRLIILSGAGYLLWRALGTIWAGVLPLLLALMVATVLYPPVQRLRSYKFPPALAALTTIIGAFAIVGTVFVAIAPSISSQSRALATQATDGITQIQKWIQGPPLNIDSEQINEVSDRIVSYIQQQSSNIASGVFTGVSTASSILVTLILVLVLTFFFLKDGDRFLPMVRRYAGNNAGWHISELCIRIWNTLGGFLRTQAIVSAVDAVLIGIGLIILKVPLALALAVITFFGGFIPIIGAFTAGALAVIIALVSNGLTNAILVLLLVLIVQQIEGNLLQPVLQSKAMNLHAAVILLSVTLGSTLFGIIGAFLAVPIAATIAVVLRYHSELVSLRAGEITIDDIEIATAKETKNTTSGAEAFSAVYSHLAKLAGRRKNTQEPSDEK
>NZ_CP011312.1|WP_052735943.1|2057208_2058444_-|esterase-family-protein
MTFRAWARSMVSILGTTAMVMASAAYLPAGAIPAVDEAYETFVGVDEPSAMVVQQLSTTLSAEGITLGAPSLFGSSDRTQPAVTPELAGAPSQRWVEMPHAELDMNPQVLDRLVEFAQVDGKRVRQINAYSPSMDRTIPLVWIRPEDTSKPHPVAYFLNGIDGGTGDGHWLGKTDIVNFYANKNVHVIVPMQGAVSYYADWLEPNPFYGGKKEMWETFLVHELVEPLEKAIGGNGMRSLAGNSMGAAAVYNIAAHHPGFYNSIGAFSGCAESNSLWGRMVMSATLSAHGIAPQTVFGPVDSAYARYNDALLNAEKYRQQPNIWIGTASGLPSQNDLEWMRTGEISSNPVEVLSGGSIEMATNYCTHRMKAKLEALNIPATYDVHNTGIHEWSLWAQQLDSYWQVQRKGFGL
>NZ_CP011312.1|WP_052735944.1|2058954_2060949_+|HtaA-domain-containing-protein
MSTVARRILIPLISLALLPIAPVHANPAEGNLFWGIRASFNNYTGGPSAFLDGATATANGFKFPLESQSYDASQERMEAQFSGGVHYRKYCTDPTKPLEGFCHLDLKFSNPKVVIDDDGSYIEAMVSSRQYLSGETYAPKNPVKIVQLHTASARFSKKDGTINWSNIATSLTEEGLKMFSNFYNLNEGLDPVALTYTGEGERPSNDASALRVAEKTWDSPRDYDHLNRPFFIGNRILMSTAEFGFTLLDKKLNHIAQQEAPVSKLNIVALDPENGYLYYAAAEDGTSTVENRTAIWRVSVNDTGFGTPEIFKKTSKTIYALGVEPTTQKVFSVSLAGSSENDDTYFTVYDGNNTREVKLPAVNTLPGLSAATSGNPYVRLYDFYNELVEMAQMNDGTFLYAPGTEISTGENSRSTKGFMFSIDLNATADSELFKLMPGSTYSYTKKLTTINTDGTTIVRSIPHGGAQTLTYANRNVTAVNSITDTEATKDWAGAAFLDGEMIQLNGKTGTLNWMDPATFKVHRSIVLPNGRETSNRAHDDFLIAKNGTIYVQTLDESRKDHLEHLSYIRLHNPIPQPESDEELEKLKDLARREQERLERERLERERQHNKPSSEGSTNSSSSNTGSSEKGWFNLRTVLPVLFAVLGGLSFIAVAVNNHLRHFFR
>NZ_CP011312.1|WP_052735945.1|2060978_2062019_+|hypothetical-protein
MKKISHLLALPLSASLILSGTAIATTAVGTAYPAIAQAQTSDSMVHGYRINKAADSAKYEPELNALVSVARVRHVIHSASGKEKFDKYYTATEQQRFAHAEAEKACFMAKARVSLSILKMEGNDDARALDLAKVGIDLEESKKALPVLLERKTQLYKEALEAPGPSTSHEALNVTSKIASEGYSRLKDFIDEQSGANPPTNHEVNAYSIVNWVVTEKYLTDSLTHHKTSDEDKKLERIAAAKDSFDKNKVEEAGEKNLTMLTTRFGEIAKPEEKNPHTTTTSPSTSSSSSQAPDPKNPDNSETPEPSEPSNSWLVYLFGALGLAGLLATIWHFVSPMLGHIALPWR
>NZ_CP011312.1|WP_052735946.1|2062110_2064669_-|hypothetical-protein
MDNVGSATVLAAREQRWRSSFIAVLVVIGMIFALIPFAPPTQAAERAADYITEAQISREQSKESPLYAGSAVYFAFKWDASEYYSTEKAPQAGDTMTVSLPSWAKFADAIVDMKDDEGNILATCVQTPTIIVCTFTDFVEGKIDLHGDYKTAVYLQETQTITPTQFPVGSADVIVDITSIATPDVIDKGIIKHVTPQPKFEILSGKASKHGHFFGVRSKSDGQNVLRWSIVVPGTGGNMVVTDTFTNNQQRAKHFDRENIRESVEVRYRDREAEGNQGGYWNLDTDIPAGTAKLLDHSLYTTTWTEVDGQARLEVSIPDTNKDYVYDVIVFTTIAADGVKNGDKVSNTAYIDGKLVNSVVTARNTVNAYGEGREGFGNIYIYKTVVGMDKAPADYVAKIKAELTYLDSKTETRIIEVKPGTTIEQAGKILDLPAGTEVTLSEADATDIPGYTKVGVEFGEGKDGTTTGSADVKISEDKTSISVIVRDAGNTDVGVSNIYLPVKAQIGLTKVIQGEAKTLVADDHEFDVQASWTDEAGVPQERTLKIVQDEVTLLEELPLGTVVTLKELLPTGTTPLVWATPRYSTDRAGVNLKDNGDGTATVVVSETPDNKVALVSVENSASRQEGQIGLTKVVGGLAAGSSQGSSQNPREFDIQASWVDTAGAKQERTLKITEGKTTLLEKLPVGTVVTLKEIMPENTAITSWSTPGYSSDNTTLKLTDNGDGTATVVIPATDDKPVVVTVNNTANIPWWWLLLPLAPLFIPPILSGSSDGSSGSSQGSSATTTVVPPTSSTPITSVPPKTTVPSEKPTTQQSLQKRLAETGASVLGMLGFAVALLLAGLGFVVLSRKRNK
>NZ_CP011312.1|WP_046441479.1|2065134_2066979_-|acetyltransferase
MPAHGQPNKRIRRVAEIDGMRGLAVLSVVIYHFWPQIAPGGFLGVDVFFVLSGFLITSLLIRERVATGGIGLKNFWVRRARRILPVAVTVLLVGTCLTAAIGGDMAVGLKLQFFSTLLFVNNWAQIASSHSYFADTDVQIFAHYWSLSVEEQFYVFWPLIVVAICLFAHRLWPQTLLIFAVVAAVLSAVAMAVLYVPETDPTRVYYGTDTHAFGLLIGAALALTITSRDPYARDSFPITTSLRYLSIPFGIVVLTGLLAAFFLIEDTSAVAYRGGIVVSSLLTAVTLYCVLCEVGPLNWLFRMPVMRWLGDHSFSLYLWHWPVIVFIRSLLSGVHPLVQGILATIISLALSMLSYRYIENPFRRQGYQKMAQKPVVWLIFLALLSGSLIGLRHVPAQTQLEADLTALRERFNMGMPELIKSHGQETSAESSLSVEPTPTVEPRVFPVGEEITALGDSVMLASIAALHERFPGIYVNAEVSRQYATAVELLQELSAQNALRQFVVLGFGTNGHASAEQIEEIFRIIGPDRTVILVLPYGDRPWIPQARQELIDAATQHPNVYLAPWCAAAGMQPFLLREDAIHPSDEGTVAYAESVAMAIQQWVENEKAMVPICI
>NZ_CP011312.1|WP_046440623.1|2067361_2068963_-|inorganic-phosphate-transporter
MSDTVAVAPLANDSKTDKWWHLTFGGLLAVTLISFTLWSFDYVGEGANKAILITNIFFGIFMAFNIGGNDVANSFGTSVGAKTLTIKQALIIAAIFEVSGAVLAGGEVTETVKSGIVDLAAIDLVPLQFAFIMMASLLGAAVWLLFATRAGMPVSTTHSIVGGIVGAALTLGFTEDLGGWEMVQWSEIGQIASSWVLSPVLGGVTAWVLYSAIKRYILDFNDKAAHELSEIKEARTQLHRDFKSSFERMSPEQQVAYTNAMTRDAALIAERDFDPADLESDYYRSLHEINSRRDNLNTHRALESWVPLLAAIGAAIIGAMMLFKGLKNLNLHLTTLGNYLILGMIAALVWMAVFIFSRTLKQQELSRATFVIFSWMQVFTASAFAFSHGSNDIANAIGPFSAVIDVLRTDSIDGKASVPTFAMVTCGVALISGLWFIGRYVIQTVGSGLTKMHPASGFAAELAAATVVMAASLLGLPVSSTHILIGAVLGVGMVNKAANWSLMKPIGLAWVITLPAAATVSSIAVYVLNALWG
>NZ_CP011312.1|WP_046440624.1|2069463_2069985_+|hypothetical-protein
MSQSRRIAIIGAGAAGLYTADLITRCGMFDLLDLFDESPAPASIATYSRTAIHPLKNTPTRLRVIGNVPFEFIDSSTTASINLATWLEKHYDAVIIADYTTELAAHQALQSAFNNSALNTSTTQNTNAESVEKLKSMGIPVTVWHNLVHLPTGRTLAQWQQTIIQARGIPVCF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011312_1	1.3\|901299\|33\|NZ_CP011312\|CRISPRCasFinder,CRT,PILER-CR	901299-901331	33	MT362618	Microcystis phage MaeS, complete genome	34860-34892	7	0.788
NZ_CP011312_1	1.3\|901299\|33\|NZ_CP011312\|CRISPRCasFinder,CRT,PILER-CR	901299-901331	33	NC_041877	Pseudomonas phage SM1, complete genome	26934-26966	7	0.788
NZ_CP011312_1	1.3\|901299\|33\|NZ_CP011312\|CRISPRCasFinder,CRT,PILER-CR	901299-901331	33	JQ067090	UNVERIFIED: Pseudomonas phage PaMx31, partial genome	50932-50964	7	0.788
NZ_CP011312_1	1.3\|901299\|33\|NZ_CP011312\|CRISPRCasFinder,CRT,PILER-CR	901299-901331	33	NZ_AP014659	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence	111189-111221	8	0.758
NZ_CP011312_1	1.3\|901299\|33\|NZ_CP011312\|CRISPRCasFinder,CRT,PILER-CR	901299-901331	33	NZ_CP049701	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence	39005-39037	8	0.758
NZ_CP011312_1	1.7\|901543\|33\|NZ_CP011312\|CRISPRCasFinder,CRT,PILER-CR	901543-901575	33	NZ_CP022191	Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence	491172-491204	10	0.697
NZ_CP011312_3	3.1\|905781\|33\|NZ_CP011312\|PILER-CR,CRISPRCasFinder,CRT	905781-905813	33	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	704029-704061	11	0.667

1. spacer 1.3|901299|33|NZ_CP011312|CRISPRCasFinder,CRT,PILER-CR matches to MT362618 (Microcystis phage MaeS, complete genome) position: , mismatch: 7, identity: 0.788

tacaccaacagcctcaaaagcatcagcgatacc	CRISPR spacer
ttcacctacagcatcaaaagcatcagcattaaa	Protospacer
* **** ***** **************. **

2. spacer 1.3|901299|33|NZ_CP011312|CRISPRCasFinder,CRT,PILER-CR matches to NC_041877 (Pseudomonas phage SM1, complete genome) position: , mismatch: 7, identity: 0.788

tacaccaacagcctcaaaagcatcagcgatacc-	CRISPR spacer
cacaccagcagcatcaaaagcatcaa-gattcaa	Protospacer
.******.**** ************. *** *

3. spacer 1.3|901299|33|NZ_CP011312|CRISPRCasFinder,CRT,PILER-CR matches to JQ067090 (UNVERIFIED: Pseudomonas phage PaMx31, partial genome) position: , mismatch: 7, identity: 0.788

tacaccaacagcctcaaaagcatcagcgatacc-	CRISPR spacer
cacaccagcagcatcaaaagcatcaa-gattcaa	Protospacer
.******.**** ************. *** *

4. spacer 1.3|901299|33|NZ_CP011312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014659 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence) position: , mismatch: 8, identity: 0.758

tacaccaacagcctcaaaagcatcagcgatacc	CRISPR spacer
cacaccaacagcctctacagcatcagcgcgcgg	Protospacer
.************** * **********

5. spacer 1.3|901299|33|NZ_CP011312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049701 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence) position: , mismatch: 8, identity: 0.758

tacaccaacagcctcaaaagcatcagcgatacc	CRISPR spacer
cacaccaacagcctctacagcatcagcgcgcgg	Protospacer
.************** * **********

6. spacer 1.7|901543|33|NZ_CP011312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022191 (Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

aggcgcatcacagatcaagatgtcgccgacgcc	CRISPR spacer
gtcggcatcaccgatcacgatgtcgccggggtt	Protospacer
.   ******* ***** **********. *..

7. spacer 3.1|905781|33|NZ_CP011312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 11, identity: 0.667

cggtcagtatcgacaggcttgaagggcgcgctc	CRISPR spacer
tcgtcagtatcgacaggttggaagggaaaaggg	Protospacer
. ***************.* ****** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

947202 : 954198

Corynebacterium_phage(50.0%)

integrase

attL 949712:949725|attR 952671:952684

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046441202.1\|947202_949851_-	DNA polymerase I	F8WQ35	Bacillus_phage	2.5e-48	33.9
949712:949725	attL	NA	NA	NA	NA
WP_046439212.1\|950141_951257_-\|integrase	tyrosine-type recombinase/integrase	A0A1W6JQG4	Corynebacterium_phage	6.1e-73	39.2
WP_052735874.1\|951980_952433_-	hypothetical protein	A0A0K0N6E3	Gordonia_phage	6.2e-16	40.8
WP_052735875.1\|952625_953033_+	hypothetical protein	A0A2R2ZGJ4	Clostridioides_phage	2.4e-27	53.2
952671:952684	attR	NA	NA	NA	NA
WP_083966413.1\|953049_953322_+	DUF2800 domain-containing protein	A0A1W6JQ97	Corynebacterium_phage	1.2e-11	59.0
WP_083966414.1\|953352_954198_+	DUF2800 domain-containing protein	A0A1W6JQ97	Corynebacterium_phage	1.8e-101	63.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011312

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection